All Neuroconductor Packages

View Dependency Graph  Browse releases  Browse archives
Package Stable Version Title Maintainer GitHub Last Updated
aal0.1.1Automated Anatomical Labeling ('AAL') AtlasJohn Muschelli muschellij2/aal 2019-12-02
afnir0.4.6Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages')John Muschelli muschellij2/afnir 2020-10-15
alvin0.3.0'ALVIN' Ventricle AtlasJohn Muschelli muschellij2/alvin 2020-01-05
ANTsR0.5.7.4ANTs in R: Quantification Tools for Biomedical ImagesBrian B. Avants stnava/ANTsR 2020-10-09
ANTsRCore0.7.4.6Core Software Infrastructure for 'ANTsR'Brian B. Avants ANTsX/ANTsRCore 2020-05-20
aws2.4.1Adaptive Weights SmoothingJoerg Polzehl WIAS-BERLIN/aws 2020-10-15
bftools0.2.3.3BioFormats ToolsJohn Muschelli muschellij2/bftools 2020-10-15
brainKCCA0.1.0Region-Level Connectivity Network Construction via Kernel Canonical Correlation AnalysisJian Kang kangjian2016/brainKCCA 2020-10-15
brainR1.6.0Helper Functions to 'misc3d' and 'rgl' Packages for Brain ImagingJohn Muschelli muschellij2/brainR 2020-10-15
cap1.0Covariate Assisted Principal (CAP) Regression for Covariance Matrix OutcomesYi Zhao zhaoyi1026/cap 2020-10-15
cfma1.0Causal Functional Mediation AnalysisYi Zhao zhaoyi1026/cfma 2019-11-26
cifti0.4.7Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') FilesJohn Muschelli muschellij2/cifti 2020-10-15
clever0.2.1Calculate Leverage of Component ModelsAmanda Mejia mandymejia/clever 2020-10-16
dcemriS40.57.2A Package for Image Analysis of DCE-MRI (S4 Implementation)Brandon Whitcher bjw34032/dcemriS4 2020-10-15
dcm2niir0.6.9.1Conversion of 'DICOM' to 'NIfTI' Imaging Files Through RJohn Muschelli muschellij2/dcm2niir.git 2020-10-15
dcmsort0.3.0Sort DICOM ImagesJohn Muschelli muschellij2/dcmsort 2020-10-15
dcmtk0.6.8.1Wrapper for 'DICOM' Toolkit ('DCMTK')John Muschelli muschellij2/dcmtk 2020-10-15
DensParcorr1.0Dens-Based Method for Partial Correlation Estimation in Large Scale Brain NetworksYikai Wang johnzonwyk/DensParcorr 2020-10-15
divest0.9.0Get Images Out of DICOM Format QuicklyJon Clayden jonclayden/divest 2020-10-15
dti1.5.2Analysis of Diffusion Weighted Imaging (DWI) DataKarsten Tabelow WIAS-BERLIN/dti 2020-10-15
EEGSpectralAnalysis0.0.0.9001Compute and plot various spectral EEG analysesAdi Gherman adigherman/EEGSpectralAnalysis 2020-10-15
eegUtils0.3.0.9000A collection of utilities for EEG analysisMatt Craddock craddm/eegUtils 2019-12-02
EveTemplate1.0.0JHU-MNI-ss (Eve) templateJean-Philippe Fortin Jfortin1/EveTemplate 2020-10-15
extrantsr3.9.13Extra Functions to Build on the 'ANTsR' PackageJohn Muschelli muschellij2/extrantsr.git 2020-05-19
flexconn0.5.4.5FLEXCONN ModelJohn Muschelli muschellij2/flexconn.git 2020-04-01
fmri1.9.3Analysis of fMRI ExperimentsKarsten Tabelow WIAS-BERLIN/fmri.git 2020-10-15
fmriqa0.4.0Functional MRI Quality Assurance RoutinesMartin Wilson martin3141/fmriqa 2020-10-15
freesurfer1.6.7.1Wrapper Functions for 'Freesurfer'John Muschelli muschellij2/freesurfer 2020-10-15
freesurferformats0.1.13Read and Write 'FreeSurfer' Neuroimaging File FormatsTim Sch dfsp-spirit/freesurferformats 2020-10-15
fslr2.25.0Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')John Muschelli muschellij2/fslr 2020-09-24
gganatogram1.1.1Create Anatograms of Various SpeciesJesper Maag jespermaag/gganatogram.git 2020-10-15
ggBrain0.1ggplot Brain ImagesAaron Fisher aaronjfisher/ggBrain.git 2020-10-15
ggneuro0.5.0Plotting Functions for Neuroimaging Data in 'ggplot2'John Muschelli muschellij2/ggneuro.git 2019-12-02
ggseg1.5.5Plotting Tool for Brain AtlasesAthanasia Mo Mowinckel LCBC-UiO/ggseg 2020-10-15
ggseg3d1.6.0Plotting tool for brain atlasesAthanasia Mo Mowinckel LCBC-UiO/ggseg3d 2020-10-15
ggsegChen1.0.1Chen datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegChen 2020-10-15
ggsegDefaultExtra1.0Extra dk and aseg datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegDefaultExtra 2020-10-15
ggsegDesterieux1.0Desterieux datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegDesterieux 2020-10-15
ggsegExtra1.5Extra Utilities for the 'ggseg'-Plotting ToolAthanasia Mo Mowinckel LCBC-UiO/ggsegExtra 2019-05-21
ggsegGlasser1.0Glasser datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegGlasser 2020-10-15
ggsegHO1.0.1Harvard-Oxford datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegHO 2020-10-15
ggsegICBM1.0ICBM datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegICBM 2020-10-15
ggsegJHU1.0JHU datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegJHU 2020-10-15
ggsegSchaefer1.0Schaefer datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegSchaefer 2020-10-15
ggsegTracula1.0Tracula datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegTracula 2020-10-15
ggsegYeo20111.0Yeo 2011 datasets for the ggseg-plotting toolAthanasia Mo Mowinckel LCBC-UiO/ggsegYeo2011 2020-10-15
gifti0.7.6Reads in 'Neuroimaging' 'GIFTI' Files with Geometry InformationJohn Muschelli muschellij2/gifti 2020-10-15
I2C20.2.4Image Intraclass Correlation CoefficientHaochang Shou muschellij2/I2C2.git 2020-10-15
ichseg0.17.1Intracerebral Hemorrhage Segmentation of X-Ray Computed Tomography (CT) ImagesJohn Muschelli muschellij2/ichseg.git 2019-12-02
ITKR0.5.2ITK in RBrian B. Avants stnava/ITKR 2019-11-26
itksnapr2.1Package of ITK-SNAPJohn Muschelli muschellij2/itksnapr 2019-12-02
kirby21.asl1.7.0Example ASL Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.asl.git 2020-10-15
kirby21.base1.7.3Example Data from the Multi-Modal MRI 'Reproducibility' ResourceJohn Muschelli muschellij2/kirby21.base 2020-10-15
kirby21.det21.7.0Example DET2 Structural Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.det2 2020-10-15
kirby21.dti1.7.0Example DTI Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.dti.git 2020-10-15
kirby21.flair1.7.0Example FLAIR Structural Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.flair 2020-10-15
kirby21.fmri1.7.0Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' ResourceJohn Muschelli muschellij2/kirby21.fmri 2020-10-15
kirby21.mricloud1.0.0A dataset containing correlation data for 20 subjects from Kennedy KriegerAdi Gherman adigherman/kirby21.mricloud.git 2020-10-15
kirby21.mt1.7.0MT Structural Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.mt.git 2019-12-02
kirby21.smri1.5Example Structural Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.smri.git 2020-10-15
kirby21.t11.7.3.2Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' ResourceJohn Muschelli muschellij2/kirby21.t1 2020-10-15
kirby21.t21.7.0Example T2 Structural Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.t2 2020-10-15
kirby21.vaso1.7.0Example VASO Data from the Multi-Modal MRI Reproducibility ResourceJohn Muschelli muschellij2/kirby21.vaso.git 2020-10-15
LESYMAP0.0.0.9221Lesion to Symptom Mapping in RDorian Pustina dorianps/LESYMAP 2019-12-02
LINDA0.5.1Lesion Identification with Neighborhood Data AnalysisDorian Pustina dorianps/LINDA 2019-12-02
lungct0.7.6.1Processing of Lung Computed Tomography ('CT') ScansJohn Muschelli muschellij2/lungct 2019-12-02
malf.templates1.2.0Template Images for Multi-Atlas Label Fusion ('MALF')John Muschelli muschellij2/malf.templates 2020-10-15
medals0.3.0Performs Memory Efficient Decomposition for Analysis of Local neighborhood moments for SegmentationJacob Maronge JMMaronge/medals 2019-12-02
mimosa0.5.8'MIMoSA': A Method for Inter-Modal Segmentation AnalysisAlessandra Valcarcel avalcarcel9/mimosa 2019-12-02
mmand1.6.0Mathematical Morphology in Any Number of DimensionsJon Clayden jonclayden/mmand 2020-10-15
mni0.2.0Human 'MNI' (Montreal Neurological Institute) Adult TemplatesJohn Muschelli muschellij2/mni 2020-10-15
MNITemplate1.0.0MNI MRI TemplateJean-Philippe Fortin Jfortin1/MNITemplate 2020-10-15
MriCloudR0.9.3R wrapper for MriCloud APIBrian Caffo bcaffo/MriCloudR.git 2020-10-15
MRIcloudT1volumetrics0.3.1MRIcloud Analysis of T1 Volumetric OutputBrian Caffo bcaffo/MRIcloudT1volumetrics.git 2020-10-15
msmri0.3.1Open Multiple Sclerosis Magnetic Resonance Imaging DataJohn Muschelli muschellij2/msmri.git 2020-10-15
neurobase1.30.1'Neuroconductor' Base Package with Helper Functions for 'nifti' ObjectsJohn Muschelli muschellij2/neurobase 2020-10-15
neurocInstall0.12.1'Neuroconductor' InstallerJohn Muschelli muschellij2/neurocInstall.git 2020-10-15
neurocStats0.1.2Package that Retrieves Neuroconductor StatsAdi Gherman adigherman/neurocStats 2019-11-26
neurohcp0.9.0Human 'Connectome' Project InterfaceJohn Muschelli muschellij2/neurohcp.git 2020-10-15
neurovault0.5.6'Neurovault' Database API AccessJohn Muschelli muschellij2/neurovault 2020-10-15
NiftiArray0.99.6.1HDF5 Delayed Array for Nifti ObjectsJohn Muschelli muschellij2/NiftiArray 2020-02-19
nitrcbot1.2Download Image Files from the 'NeuroImaging Tools and Resources Collaboratory'Adi Gherman adigherman/nitrcbot.git 2020-10-15
nsrr0.1.5Interface to National Sleep Research ResourceJohn Muschelli muschellij2/nsrr 2020-10-15
oasis3.0.1Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI)Elizabeth M. Sweeney emsweene/oasis 2020-10-15
oro.asl0.1.1Rigorous - Aterial Spin LabellingBrandon Whitcher bjw34032/oro.asl 2020-10-15
oro.dicom0.5.2.2Rigorous - DICOM Input / OutputBrandon Whitcher bjw34032/oro.dicom 2020-10-15
oro.nifti0.10.3Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / OutputBrandon Whitcher bjw34032/oro.nifti 2020-10-15
oro.pet0.2.5Rigorous - Positron Emission TomographyBrandon Whitcher bjw34032/oro.pet 2020-10-15
pain210.1.121 Pain StudiesSimon Vandekar simonvandekar/pain21 2020-10-15
papayar1.0View Medical Research Images using the Papaya JavaScript LibraryJohn Muschelli muschellij2/papayar 2019-12-02
papayaWidget0.7.1Embed an 'Papaya' Image ViewerJohn Muschelli muschellij2/papayaWidget 2020-03-16
pbj0.1.6Parametric Bootstrap Joint Testing Procedures for NeuroimagingSimon Vandekar simonvandekar/pbj 2019-12-02
penn1150.1.1Template MRI Scan from 115 University of Pennsylvania PatientsJohn Muschelli muschellij2/penn115 2020-10-15
qMRI1.2Methods for Quantitative Magnetic Resonance Imaging ('qMRI')Karsten Tabelow WIAS-BERLIN/qMRI 2020-10-15
radtools1.0.7.2Utilities for Convenient Extraction of Medical Image MetadataPamela Russell pamelarussell/radtools 2020-10-15
RAVEL1.2.2Removal of Artificial Voxel Effect by Linear RegressionJean-Philippe Fortin Jfortin1/RAVEL 2019-12-02
RAVELData0.99.1Example dataset of input data for RAVEL (4 scans)Jean-Philippe Fortin Jfortin1/RAVELData 2020-10-15
rcamino0.6.4Port of the Camino SoftwareJohn Muschelli muschellij2/rcamino 2020-10-15
RIA1.4.2Radiomics Image Analysis Toolbox for Medial ImagesMarton Kolossvary cran/RIA 2020-10-15
RNifti1.2.3Fast R and C++ Access to NIfTI ImagesJon Clayden jonclayden/RNifti.git 2020-10-15
RNiftyReg2.7.0Image Registration Using the 'NiftyReg' LibraryJon Clayden jonclayden/RNiftyReg 2020-10-15
robex1.2.6.1Robust Brain Extraction ('ROBEX')John Muschelli muschellij2/robex 2020-05-18
ROpenCVLite0.3.410Install 'OpenCV'Simon Garnier swarm-lab/ROpenCVLite.git 2019-12-02
rtapas0.2.0TAPAS: A thresholding approach for probability map automatic segmentation automatic segmentationAlessandra Valcarcel avalcarcel9/rtapas 2020-03-27
Rvision0.3.5Basic Computer Vision LibrarySimon Garnier swarm-lab/Rvision 2019-12-02
Rxnat1.0.14Queries and Extracts Images from Extensible Neuroimaging Archive Toolkit Public/Private DatasetsAdi Gherman adigherman/Rxnat.git 2020-10-15
smri.process0.8.4Processing of Structural Magnetic Resonance ImagingJohn Muschelli muschellij2/smri.process 2019-12-02
spant1.7.0MR Spectroscopy Analysis ToolsMartin Wilson martin3141/spant 2020-07-09
spm12r2.8.1Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'John Muschelli muschellij2/spm12r 2020-10-15
sri240.1.2SRI24 MRI Atlas for Normal Adult Brain AnatomyJohn Muschelli muschellij2/sri24 2020-10-15
stapler0.7.2Simultaneous Truth and Performance Level EstimationJohn Muschelli muschellij2/stapler 2020-10-15
sublime1.3Automatic Lesion Incidence Estimation and Detection using Multi-Modality Longitudinal Magnetic Resonance ImagesElizabeth M. Sweeney emsweene/SuBLIME_package 2020-10-15
voxel1.3.5Mass-Univariate Voxelwise Analysis of Medical Imaging DataAngel Garcia de la Garza angelgar/voxel 2020-10-15
waveslim1.8.0Basic Wavelet Routines for One-, Two-, and Three-Dimensional Signal ProcessingBrandon Whitcher bjw34032/waveslim.git 2020-10-15
WhiteStripe2.3.2White Matter Normalization for Magnetic Resonance Images using WhiteStripeJohn Muschelli muschellij2/WhiteStripe 2020-10-15