| aal | 0.1.1 | Automated Anatomical Labeling ('AAL') Atlas
| John Muschelli | muschellij2/aal | 2019-08-06 |
| afnir | 0.4.6 | Wrapper Functions for 'AFNI' (Analysis of Functional
'NeuroImages')
| John Muschelli | muschellij2/afnir | 2019-08-06 |
| ANTsR | 0.5.1 | ANTs in R: Quantification Tools for Biomedical Images
| Brian B. Avants | stnava/ANTsR | 2019-08-18 |
| ANTsRCore | 0.7.0 | Core Software Infrastructure for 'ANTsR'
| Brian B. Avants | ANTsX/ANTsRCore | 2019-08-11 |
| bftools | 0.2.0 | BioFormats Tools
| John Muschelli | muschellij2/bftools | 2018-11-08 |
| brainKCCA | 0.1.0 | Region-level Connectivity Network Construction via Kernel
Canonical Correlation Analysis
| Jian Kang | kangjian2016/brainKCCA | 2019-08-06 |
| brainR | 1.5.2.1 | Helper Functions to 'misc3d' and 'rgl' Packages for Brain
Imaging
| John Muschelli | muschellij2/brainR | 2019-08-05 |
| cap | 1.0 | Covariate Assisted Principal (CAP) Regression for Covariance
Matrix Outcomes
| Yi Zhao | zhaoyi1026/cap | 2018-10-01 |
| cfma | 1.0 | Causal Functional Mediation Analysis
| Yi Zhao | zhaoyi1026/cfma | 2018-09-27 |
| cifti | 0.4.6.0 | Toolbox for Connectivity Informatics Technology Initiative
('CIFTI') Files
| John Muschelli | muschellij2/cifti | 2019-08-05 |
| dcemriS4 | 0.57.1 | A Package for Image Analysis of DCE-MRI (S4 Implementation)
| Brandon Whitcher | bjw34032/dcemriS4 | 2019-08-05 |
| dcm2niir | 0.6.7.1 | Conversion of 'DICOM' to 'NIfTI' Imaging Files Through R
| John Muschelli | muschellij2/dcm2niir.git | 2019-07-16 |
| dcmsort | 0.3.0 | Sort DICOM Images
| John Muschelli | muschellij2/dcmsort | 2019-08-11 |
| dcmtk | 0.6.8 | Wrapper for 'DICOM' Toolkit ('DCMTK')
| John Muschelli | muschellij2/dcmtk | 2019-04-25 |
| DensParcorr | 1.0 | Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks
| Yikai Wang | johnzonwyk/DensParcorr | 2018-09-27 |
| divest | 0.8.1 | Get Images Out of DICOM Format Quickly
| Jon Clayden | jonclayden/divest | 2019-08-11 |
| dti | 1.4.1 | Analysis of Diffusion Weighted Imaging (DWI) Data
| Karsten Tabelow | WIAS-BERLIN/dti | 2019-08-11 |
| eegUtils | 0.4.0 | A collection of utilities for EEG analysis
| Matt Craddock | craddm/eegUtils | 2019-04-28 |
| EveTemplate | 0.99.15 | JHU-MNI-ss (Eve) template
| Jean-Philippe Fortin | Jfortin1/EveTemplate | 2019-08-05 |
| extrantsr | 3.9.10 | Extra Functions to Build on the 'ANTsR' Package
| John Muschelli | muschellij2/extrantsr.git | 2019-08-11 |
| flexconn | 0.5.3.1 | FLEXCONN Model
| John Muschelli | muschellij2/flexconn.git | 2019-08-06 |
| fmri | 1.9.1 | Analysis of fMRI Experiments
| Karsten Tabelow | WIAS-BERLIN/fmri.git | 2019-06-23 |
| fmriqa | 0.4.0 | Functional MRI Quality Assurance Routines
| Martin Wilson | martin3141/fmriqa | 2019-08-05 |
| freesurfer | 1.6.5 | Wrapper Functions for 'Freesurfer'
| John Muschelli | muschellij2/freesurfer | 2019-08-06 |
| fslr | 2.24.1 | Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB')
| John Muschelli | muschellij2/fslr | 2019-08-18 |
| gganatogram | 1.1.1 | Create Anatograms of Various Species
| Jesper Maag | jespermaag/gganatogram.git | 2019-02-12 |
| ggBrain | 0.1 | ggplot Brain Images
| Aaron Fisher | aaronjfisher/ggBrain.git | 2018-09-27 |
| ggneuro | 0.5.0 | Plotting Functions for Neuroimaging Data in 'ggplot2'
| John Muschelli | muschellij2/ggneuro.git | 2019-08-06 |
| ggseg | 1.5.2 | Plotting tool for brain atlases
| Athanasia Mo Mowinckel | LCBC-UiO/ggseg | 2019-08-11 |
| ggsegExtra | 1.5 | Extra datasets for the ggseg-plotting tool
| Athanasia Mo Mowinckel | LCBC-UiO/ggsegExtra | 2019-08-11 |
| gifti | 0.7.5.9001 | Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information
| John Muschelli | muschellij2/gifti | 2019-06-13 |
| I2C2 | 0.2.4 | Image Intraclass Correlation Coefficient
| Haochang Shou | muschellij2/I2C2.git | 2019-08-18 |
| ichseg | 0.16.1 | Intracerebral Hemorrhage Segmentation of X-Ray Computed
Tomography (CT) Images
| John Muschelli | muschellij2/ichseg.git | 2019-08-12 |
| ITKR | 0.5.1 | ITK in R
| Brian B. Avants | stnava/ITKR | 2019-08-18 |
| itksnapr | 2.1 | Package of ITK-SNAP
| John Muschelli | muschellij2/itksnapr | 2019-08-06 |
| kirby21.asl | 1.7.0 | Example ASL Data from the Multi-Modal MRI Reproducibility
Resource
| John Muschelli | muschellij2/kirby21.asl.git | 2018-09-26 |
| kirby21.base | 1.7.0 | Example Data from the Multi-Modal MRI 'Reproducibility' Resource
| John Muschelli | muschellij2/kirby21.base | 2018-09-25 |
| kirby21.det2 | 1.7.0 | Example DET2 Structural Data from the Multi-Modal MRI
Reproducibility Resource
| John Muschelli | muschellij2/kirby21.det2 | 2018-09-26 |
| kirby21.dti | 1.7.0 | Example DTI Data from the Multi-Modal MRI Reproducibility
Resource
| John Muschelli | muschellij2/kirby21.dti.git | 2018-09-27 |
| kirby21.flair | 1.7.0 | Example FLAIR Structural Data from the Multi-Modal MRI
Reproducibility Resource
| John Muschelli | muschellij2/kirby21.flair | 2018-09-26 |
| kirby21.fmri | 1.7.0 | Example Functional Imaging Data from the Multi-Modal MRI
'Reproducibility' Resource
| John Muschelli | muschellij2/kirby21.fmri | 2018-09-26 |
| kirby21.mricloud | 0.0.0.9000 | A dataset containing correlation data for 20 subjects from
Kennedy Krieger
| Adi Gherman | adigherman/kirby21.mricloud.git | 2018-09-26 |
| kirby21.mt | 1.7.0 | MT Structural Data from the Multi-Modal MRI Reproducibility
Resource
| John Muschelli | muschellij2/kirby21.mt.git | 2018-09-27 |
| kirby21.smri | 1.5 | Example Structural Data from the Multi-Modal MRI Reproducibility
Resource
| John Muschelli | muschellij2/kirby21.smri.git | 2018-09-27 |
| kirby21.t1 | 1.7.0 | Example T1 Structural Data from the Multi-Modal MRI
'Reproducibility' Resource
| John Muschelli | muschellij2/kirby21.t1 | 2018-09-26 |
| kirby21.t2 | 1.7.0 | Example T2 Structural Data from the Multi-Modal MRI
Reproducibility Resource
| John Muschelli | muschellij2/kirby21.t2 | 2018-09-26 |
| kirby21.vaso | 1.7.0 | Example VASO Data from the Multi-Modal MRI Reproducibility
Resource
| John Muschelli | muschellij2/kirby21.vaso.git | 2018-09-26 |
| LESYMAP | 0.0.0.9221 | Lesion to Symptom Mapping in R
| Dorian Pustina | dorianps/LESYMAP | 2019-08-05 |
| LINDA | 0.5.0 | Lesion Identification with Neighborhood Data Analysis
| Dorian Pustina | dorianps/LINDA | 2019-08-05 |
| lungct | 0.7.5 | Processing of Lung Computed Tomography ('CT') Scans
| John Muschelli | muschellij2/lungct | 2019-08-12 |
| malf.templates | 0.3.1 | Template Images for Multi-Atlas Label Fusion ('MALF')
| John Muschelli | muschellij2/malf.templates | 2018-09-27 |
| medals | 0.3.0 | Performs Memory Efficient Decomposition for Analysis of Local
neighborhood moments for Segmentation
| Jacob Maronge | JMMaronge/medals | 2019-08-12 |
| mimosa | 0.5.8 | 'MIMoSA': A Method for Inter-Modal Segmentation Analysis
| Alessandra Valcarcel | avalcarcel9/mimosa | 2019-08-12 |
| mni | 0.2.0 | Human 'MNI' (Montreal Neurological Institute) Adult Templates
| John Muschelli | muschellij2/mni | 2019-04-25 |
| MNITemplate | 0.99.6 | MNI152 template
| Jean-Philippe Fortin | Jfortin1/MNITemplate | 2019-08-05 |
| MriCloudR | 0.9.2 | R wrapper for MriCloud API
| Brian Caffo | bcaffo/MriCloudR.git | 2019-06-09 |
| MRIcloudT1volumetrics | 0.3.1 | MRIcloud Analysis of T1 Volumetric Output
| Brian Caffo | bcaffo/MRIcloudT1volumetrics.git | 2019-08-04 |
| msmri | 0.3.1 | Open Multiple Sclerosis Magnetic Resonance Imaging Data
| John Muschelli | muschellij2/msmri.git | 2018-09-27 |
| neurobase | 1.27.11 | 'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects
| John Muschelli | muschellij2/neurobase | 2019-08-18 |
| neurocInstall | 0.11.2 | 'Neuroconductor' Installer
| John Muschelli | muschellij2/neurocInstall.git | 2019-07-14 |
| neurocStats | 0.1.0 | Package that Retrieves Neuroconductor Stats
| Adi Gherman | adigherman/neurocStats | 2019-07-19 |
| neurohcp | 0.8.1 | Human 'Connectome' Project Interface
| John Muschelli | muschellij2/neurohcp.git | 2018-09-27 |
| neurovault | 0.5.5 | 'Neurovault' Database API Access
| John Muschelli | muschellij2/neurovault | 2018-09-28 |
| nitrcbot | 1.2 | Download Image Files from the 'NeuroImaging Tools and Resources
Collaboratory'
| Adi Gherman | adigherman/nitrcbot.git | 2018-11-13 |
| nsrr | 0.1.3 | Interface to National Sleep Research Resource
| John Muschelli | muschellij2/nsrr | 2019-06-18 |
| oasis | 3.0.1 | Multiple Sclerosis Lesion Segmentation using Magnetic Resonance
Imaging (MRI)
| Elizabeth M. Sweeney | emsweene/oasis | 2019-08-11 |
| oro.asl | 0.1.1 | Rigorous - Aterial Spin Labelling
| Brandon Whitcher | bjw34032/oro.asl | 2018-10-02 |
| oro.dicom | 0.5.2.2 | Rigorous - DICOM Input / Output
| Brandon Whitcher | bjw34032/oro.dicom | 2019-08-11 |
| oro.nifti | 0.10.1 | Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output
| Brandon Whitcher | bjw34032/oro.nifti | 2019-08-05 |
| oro.pet | 0.2.5 | Rigorous - Positron Emission Tomography
| Brandon Whitcher | bjw34032/oro.pet | 2019-08-11 |
| pain21 | 0.1.0 | 21 Pain Studies
| Simon Vandekar | simonvandekar/pain21 | 2019-03-01 |
| papayar | 1.0 | View Medical Research Images using the Papaya JavaScript Library
| John Muschelli | muschellij2/papayar | 2019-08-06 |
| papayaWidget | 0.5.5 | Embed an 'Papaya' Image Viewer
| John Muschelli | muschellij2/papayaWidget | 2019-08-06 |
| pbj | 0.1.5 | Parametric Bootstrap Joint Testing Procedures for Neuroimaging
| Simon Vandekar | simonvandekar/pbj | 2019-08-11 |
| penn115 | 0.1.1 | Template MRI Scan from 115 University of Pennsylvania Patients
| John Muschelli | muschellij2/penn115 | 2019-08-06 |
| radtools | 1.0.6 | Utilities for Convenient Extraction of Medical Image Metadata
| Pamela Russell | pamelarussell/radtools | 2019-08-11 |
| RAVEL | 1.2.2 | Removal of Artificial Voxel Effect by Linear Regression
| Jean-Philippe Fortin | Jfortin1/RAVEL | 2019-08-07 |
| RAVELData | 0.99.1 | Example dataset of input data for RAVEL
| Jean-Philippe Fortin | Jfortin1/RAVELData | 2019-04-25 |
| rcamino | 0.6.3 | Port of the Camino Software
| John Muschelli | muschellij2/rcamino | 2019-08-06 |
| RNifti | 0.11.1 | Fast R and C++ Access to NIfTI Images
| Jon Clayden | jonclayden/RNifti.git | 2019-08-04 |
| RNiftyReg | 2.6.6 | Image Registration Using the 'NiftyReg' Library
| Jon Clayden | jonclayden/RNiftyReg | 2019-08-05 |
| robex | 1.2.6 | Robust Brain Extraction ('ROBEX')
| John Muschelli | muschellij2/robex | 2019-08-06 |
| ROpenCVLite | 0.3.410 | Install 'OpenCV'
| Simon Garnier | swarm-lab/ROpenCVLite.git | 2019-08-04 |
| rtapas | 0.0.2 | TAPAS: A thresholding approach for probability map automatic
segmentation automatic segmentation
| Alessandra Valcarcel | avalcarcel9/rtapas | 2019-08-06 |
| Rvision | 0.3.6 | Basic Computer Vision Library
| Simon Garnier | swarm-lab/Rvision | 2019-08-05 |
| Rxnat | 1.0.6 | Queries and Extracts Images from Extensible Neuroimaging Archive
Toolkit Public/Private Datasets
| Adi Gherman | adigherman/Rxnat.git | 2019-06-30 |
| smri.process | 0.8.1 | Processing of Structural Magnetic Resonance Imaging
| John Muschelli | muschellij2/smri.process | 2019-08-12 |
| spant | 0.15.9000 | MR Spectroscopy Analysis Tools
| Martin Wilson | martin3141/spant | 2019-08-18 |
| spm12r | 2.8.1 | Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging'
| John Muschelli | muschellij2/spm12r | 2019-08-06 |
| sri24 | 0.1.1 | SRI24 MRI Atlas for Normal Adult Brain Anatomy
| John Muschelli | muschellij2/sri24 | 2018-09-28 |
| stapler | 0.6.6 | Simultaneous Truth and Performance Level Estimation
| John Muschelli | muschellij2/stapler | 2019-08-05 |
| sublime | 1.3 | Automatic Lesion Incidence Estimation and Detection using
Multi-Modality Longitudinal Magnetic Resonance Images
| Elizabeth M. Sweeney | emsweene/SuBLIME_package | 2019-08-05 |
| voxel | 1.3.5 | Mass-Univariate Voxelwise Analysis of Medical Imaging Data
| Angel Garcia de la Garza | angelgar/voxel | 2019-08-05 |
| waveslim | 1.8.0 | Basic Wavelet Routines for One-, Two-, and Three-Dimensional
Signal Processing
| Brandon Whitcher | bjw34032/waveslim.git | 2018-09-25 |
| WhiteStripe | 2.3.1 | White Matter Normalization for Magnetic Resonance Images using
WhiteStripe
| John Muschelli | muschellij2/WhiteStripe | 2019-08-05 |
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