Neuroconductor Packages

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Package NameVersionPackage TitleMaintainer(s)GitHub URLLast updated
afnir0.4.4Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages') John Muschelli muschellij2/afnir 2017-10-08
ANTsR0.6.1ANTs in R: Quantification Tools for Biomedical Images Brian B. Avants stnava/ANTsR 2017-10-05
ANTsRCore0.5.0Core Software Infrastructure for ANTsR Brian B. Avants stnava/ANTsRCore.git 2018-04-20
brainKCCA0.0.0.9001Region-level Connectivity Network Construction via Kernel Canonical Correlation Analysis Jian Kang xuboyue/brainKCCA_v4 2018-03-23
brainR1.5.2Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging John Muschelli muschellij2/brainR 2017-11-29
cifti0.4.5Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files John Muschelli muschellij2/cifti 2018-04-18
dcemriS40.57.1A Package for Image Analysis of DCE-MRI (S4 Implementation) Brandon Whitcher bjw34032/dcemriS4 2017-10-08
dcm2niir0.6.1Conversion of 'DICOM' to 'NIfTI' Imaging Files Through R John Muschelli muschellij2/dcm2niir 2017-12-04
dcmsort0.2.4Sort DICOM Images John Muschelli muschellij2/dcmsort 2018-04-21
DensParcorr1.0Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks Yikai Wang johnzonwyk/DensParcorr 2017-10-09
divest0.4.1Get Images Out of DICOM Format Quickly Jon Clayden jonclayden/divest 2017-10-06
dti1.2.6.2Analysis of Diffusion Weighted Imaging (DWI) Data Karsten Tabelow WIAS-BERLIN/dti 2017-10-20
EveTemplate0.99.14JHU-MNI-ss (Eve) template Jean-Philippe Fortin Jfortin1/EveTemplate 2017-10-06
extrantsr3.5.2Extra Functions to Build on the ANTsR Package John Muschelli muschellij2/extrantsr.git 2017-10-09
fmri1.7.4Analysis of fMRI Experiments Karsten Tabelow WIAS-BERLIN/fmri.git 2017-10-20
fmriqa0.2.0Functional MRI Quality Assurance Routines Martin Wilson martin3141/fmriqa 2017-12-20
freesurfer1.6Wrapper Functions for 'Freesurfer' John Muschelli muschellij2/freesurfer 2017-10-09
fslr2.18.2Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB') John Muschelli muschellij2/fslr 2018-04-18
ggBrain0.1ggplot Brain Images Aaron Fisher aaronjfisher/ggBrain 2017-10-09
ggneuro0.4.1Plotting Functions for Neuroimaging Data in 'ggplot2' John Muschelli muschellij2/ggneuro.git 2017-10-12
gifti0.7.5Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information John Muschelli muschellij2/gifti.git 2018-04-21
I2C20.2.2Image Intraclass Correlation Coefficient Haochang Shou muschellij2/I2C2.git 2017-10-06
ichseg0.11.0Intracerebral Hemorrhage Segmentation of X-Ray Computed Tomography (CT) Images John Muschelli muschellij2/ichseg.git 2018-04-21
ITKR0.4.12.4ITK in R Brian B. Avants stnava/ITKR 2017-10-04
itksnapr2.1Package of ITK-SNAP John Muschelli muschellij2/itksnapr 2017-10-08
kirby21.asl1.5.1Example ASL Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.asl.git 2017-10-05
kirby21.base1.6.0Example Data from the Multi-Modal MRI 'Reproducibility' Resource John Muschelli muschellij2/kirby21.base 2018-04-18
kirby21.det21.5.1Example DET2 Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.det2 2017-10-05
kirby21.dti1.5.1Example DTI Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.dti 2017-10-05
kirby21.flair1.5.1Example FLAIR Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.flair 2017-10-05
kirby21.fmri1.6.0Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource John Muschelli muschellij2/kirby21.fmri 2018-04-18
kirby21.mt1.5.1MT Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.mt 2017-10-05
kirby21.smri1.5Example Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.smri 2017-10-05
kirby21.t11.6.0Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource John Muschelli muschellij2/kirby21.t1 2018-04-18
kirby21.t21.5.1Example T2 Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.t2 2017-10-05
kirby21.vaso1.5.1Example VASO Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.vaso 2017-10-05
lungct0.6.0.1Processing of Lung CT Scans John Muschelli muschellij2/lungct 2017-10-09
malf.templates0.3Template Images for Multi-Atlas Label Fusion ('MALF') John Muschelli muschellij2/malf.templates 2017-10-05
mimosa0.5.3'MIMoSA': A Method for Inter-Modal Segmentation Analysis Alessandra Valcarcel avalcarcel9/mimosa 2017-12-12
MNITemplate0.99.4MNI152 template Jean-Philippe Fortin Jfortin1/MNITemplate 2017-10-06
MRIcloudT1volumetrics0.1MRIcloud Analysis of T1 Volumetric Output Brian Caffo bcaffo/MRIcloudT1volumetrics 2017-10-06
neurobase1.22.0'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects John Muschelli muschellij2/neurobase 2017-10-06
neurocInstall0.10.3'Neuroconductor' Installer John Muschelli muschellij2/neurocInstall 2018-04-18
neurohcp0.7.4Human 'Connectome' Project Interface John Muschelli muschellij2/neurohcp 2018-04-11
neurovault0.5.5'Neurovault' Database API Access John Muschelli muschellij2/neurovault 2017-12-01
nitrcbot0.0.0.9001Download Image Files from the 'NeuroImaging Tools and Resources Collaboratory' Adi Gherman adigherman/nitrcbot.git 2018-03-07
oasis2.5.2Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI) Elizabeth M. Sweeney emsweene/oasis 2017-10-09
oro.asl0.1.1Rigorous - Aterial Spin Labelling Brandon Whitcher bjw34032/oro.asl 2017-10-08
oro.dicom0.5.2Rigorous - DICOM Input / Output Brandon Whitcher bjw34032/oro.dicom 2017-10-06
oro.nifti0.8.1Rigorous - NIfTI + ANALYZE + AFNI : Input / Output Brandon Whitcher bjw34032/oro.nifti 2017-10-06
oro.pet0.2.5Rigorous - Positron Emission Tomography Brandon Whitcher bjw34032/oro.pet 2017-10-08
papayar1.0View Medical Research Images using the Papaya JavaScript Library John Muschelli muschellij2/papayar 2017-10-08
papayaWidget0.5.4Rmarkdown papaya embedding John Muschelli muschellij2/papayaWidget 2018-03-08
RAVEL1.1.1Removal of Artificial Voxel Effect by Linear Regression Jean-Philippe Fortin Jfortin1/RAVEL 2017-10-12
rcamino0.6.2Port of the Camino Software John Muschelli muschellij2/rcamino 2018-04-21
RNifti0.7.1Fast R and C++ Access to NIfTI Images Jon Clayden jonclayden/RNifti.git 2017-10-06
RNiftyReg2.6.0Image Registration Using the 'NiftyReg' Library Jon Clayden jonclayden/RNiftyReg 2017-10-06
robex1.2.3Robust Brain Extraction ('ROBEX') John Muschelli muschellij2/robex 2017-10-11
ROpenCVLite0.1.34Install OpenCV Within R Simon Garnier swarm-lab/ROpenCVLite 2018-02-07
Rvision0.2.1Basic Computer Vision Library Simon Garnier swarm-lab/Rvision 2018-01-18
smri.process0.4.2Processing of Structural Magnetic Resonance IMaging John Muschelli muschellij2/smri.process 2017-11-08
spant0.6.0.9000MR Spectroscopy Analysis Tools Martin Wilson martin3141/spant 2017-10-20
spm12r2.7.3Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging' John Muschelli muschellij2/spm12r 2017-10-11
sri240.1.1SRI24 MRI Atlas for Normal Adult Brain Anatomy John Muschelli muschellij2/sri24 2018-02-19
stapler0.6.5Simultaneous Truth and Performance Level Estimation John Muschelli muschellij2/stapler 2018-01-04
sublime1.3Automatic Lesion Incidence Estimation and Detection using Multi-Modality Longitudinal Magnetic Resonance Images Elizabeth M. Sweeney emsweene/SuBLIME_package 2017-10-12
waveslim1.7.8Basic Wavelet Routines for One-, Two-, and Three-dimensional Signal Processing Brandon Whitcher bjw34032/waveslim 2017-10-25
WhiteStripe2.3.0White Matter Normalization for Magnetic Resonance Images using WhiteStripe John Muschelli muschellij2/WhiteStripe 2018-04-18