| aal | 0.1.1 | Automated Anatomical Labeling ('AAL') Atlas | John Muschelli | muschellij2/aal | 2019-12-02 |
| afnir | 0.4.6 | Wrapper Functions for 'AFNI' (Analysis of Functional
'NeuroImages') | John Muschelli | muschellij2/afnir | 2020-10-15 |
| alvin | 0.3.0 | 'ALVIN' Ventricle Atlas | John Muschelli | muschellij2/alvin | 2020-01-05 |
| ANTsR | 0.5.7.4 | ANTs in R: Quantification Tools for Biomedical Images | Brian B. Avants | stnava/ANTsR | 2020-10-09 |
| ANTsRCore | 0.7.4.6 | Core Software Infrastructure for 'ANTsR' | Brian B. Avants | ANTsX/ANTsRCore | 2020-05-20 |
| aws | 2.4.1 | Adaptive Weights Smoothing | Joerg Polzehl | WIAS-BERLIN/aws | 2020-10-15 |
| bftools | 0.2.3.3 | BioFormats Tools | John Muschelli | muschellij2/bftools | 2020-10-15 |
| brainKCCA | 0.1.0 | Region-Level Connectivity Network Construction via Kernel
Canonical Correlation Analysis | Jian Kang | kangjian2016/brainKCCA | 2020-10-15 |
| brainR | 1.6.0 | Helper Functions to 'misc3d' and 'rgl' Packages for Brain
Imaging | John Muschelli | muschellij2/brainR | 2020-10-15 |
| cap | 1.0 | Covariate Assisted Principal (CAP) Regression for Covariance
Matrix Outcomes | Yi Zhao | zhaoyi1026/cap | 2020-10-15 |
| cfma | 1.0 | Causal Functional Mediation Analysis | Yi Zhao | zhaoyi1026/cfma | 2019-11-26 |
| cifti | 0.4.7 | Toolbox for Connectivity Informatics Technology Initiative
('CIFTI') Files | John Muschelli | muschellij2/cifti | 2020-10-15 |
| clever | 0.2.1 | Calculate Leverage of Component Models | Amanda Mejia | mandymejia/clever | 2020-10-16 |
| dcemriS4 | 0.57.2 | A Package for Image Analysis of DCE-MRI (S4 Implementation) | Brandon Whitcher | bjw34032/dcemriS4 | 2020-10-15 |
| dcm2niir | 0.6.9.1 | Conversion of 'DICOM' to 'NIfTI' Imaging Files Through R | John Muschelli | muschellij2/dcm2niir.git | 2020-10-15 |
| dcmsort | 0.3.0 | Sort DICOM Images | John Muschelli | muschellij2/dcmsort | 2020-10-15 |
| dcmtk | 0.6.8.1 | Wrapper for 'DICOM' Toolkit ('DCMTK') | John Muschelli | muschellij2/dcmtk | 2020-10-15 |
| DensParcorr | 1.0 | Dens-Based Method for Partial Correlation Estimation in Large
Scale Brain Networks | Yikai Wang | johnzonwyk/DensParcorr | 2020-10-15 |
| divest | 0.9.0 | Get Images Out of DICOM Format Quickly | Jon Clayden | jonclayden/divest | 2020-10-15 |
| dti | 1.5.2 | Analysis of Diffusion Weighted Imaging (DWI) Data | Karsten Tabelow | WIAS-BERLIN/dti | 2020-10-15 |
| EEGSpectralAnalysis | 0.0.0.9001 | Compute and plot various spectral EEG analyses | Adi Gherman | adigherman/EEGSpectralAnalysis | 2020-10-15 |
| eegUtils | 0.3.0.9000 | A collection of utilities for EEG analysis | Matt Craddock | craddm/eegUtils | 2019-12-02 |
| EveTemplate | 1.0.0 | JHU-MNI-ss (Eve) template | Jean-Philippe Fortin | Jfortin1/EveTemplate | 2020-10-15 |
| extrantsr | 3.9.13 | Extra Functions to Build on the 'ANTsR' Package | John Muschelli | muschellij2/extrantsr.git | 2020-05-19 |
| flexconn | 0.5.4.5 | FLEXCONN Model | John Muschelli | muschellij2/flexconn.git | 2020-04-01 |
| fmri | 1.9.3 | Analysis of fMRI Experiments | Karsten Tabelow | WIAS-BERLIN/fmri.git | 2020-10-15 |
| fmriqa | 0.4.0 | Functional MRI Quality Assurance Routines | Martin Wilson | martin3141/fmriqa | 2020-10-15 |
| freesurfer | 1.6.7.1 | Wrapper Functions for 'Freesurfer' | John Muschelli | muschellij2/freesurfer | 2020-10-15 |
| freesurferformats | 0.1.13 | Read and Write 'FreeSurfer' Neuroimaging File Formats | Tim Sch | dfsp-spirit/freesurferformats | 2020-10-15 |
| fslr | 2.25.0 | Wrapper Functions for 'FSL' ('FMRIB' Software Library) from
Functional MRI of the Brain ('FMRIB') | John Muschelli | muschellij2/fslr | 2020-09-24 |
| gganatogram | 1.1.1 | Create Anatograms of Various Species | Jesper Maag | jespermaag/gganatogram.git | 2020-10-15 |
| ggBrain | 0.1 | ggplot Brain Images | Aaron Fisher | aaronjfisher/ggBrain.git | 2020-10-15 |
| ggneuro | 0.5.0 | Plotting Functions for Neuroimaging Data in 'ggplot2' | John Muschelli | muschellij2/ggneuro.git | 2019-12-02 |
| ggseg | 1.5.5 | Plotting Tool for Brain Atlases | Athanasia Mo Mowinckel | LCBC-UiO/ggseg | 2020-10-15 |
| ggseg3d | 1.6.0 | Plotting tool for brain atlases | Athanasia Mo Mowinckel | LCBC-UiO/ggseg3d | 2020-10-15 |
| ggsegChen | 1.0.1 | Chen datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegChen | 2020-10-15 |
| ggsegDefaultExtra | 1.0 | Extra dk and aseg datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegDefaultExtra | 2020-10-15 |
| ggsegDesterieux | 1.0 | Desterieux datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegDesterieux | 2020-10-15 |
| ggsegExtra | 1.5 | Extra Utilities for the 'ggseg'-Plotting Tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegExtra | 2019-05-21 |
| ggsegGlasser | 1.0 | Glasser datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegGlasser | 2020-10-15 |
| ggsegHO | 1.0.1 | Harvard-Oxford datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegHO | 2020-10-15 |
| ggsegICBM | 1.0 | ICBM datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegICBM | 2020-10-15 |
| ggsegJHU | 1.0 | JHU datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegJHU | 2020-10-15 |
| ggsegSchaefer | 1.0 | Schaefer datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegSchaefer | 2020-10-15 |
| ggsegTracula | 1.0 | Tracula datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegTracula | 2020-10-15 |
| ggsegYeo2011 | 1.0 | Yeo 2011 datasets for the ggseg-plotting tool | Athanasia Mo Mowinckel | LCBC-UiO/ggsegYeo2011 | 2020-10-15 |
| gifti | 0.7.6 | Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information | John Muschelli | muschellij2/gifti | 2020-10-15 |
| I2C2 | 0.2.4 | Image Intraclass Correlation Coefficient | Haochang Shou | muschellij2/I2C2.git | 2020-10-15 |
| ichseg | 0.17.1 | Intracerebral Hemorrhage Segmentation of X-Ray Computed
Tomography (CT) Images | John Muschelli | muschellij2/ichseg.git | 2019-12-02 |
| ITKR | 0.5.2 | ITK in R | Brian B. Avants | stnava/ITKR | 2019-11-26 |
| itksnapr | 2.1 | Package of ITK-SNAP | John Muschelli | muschellij2/itksnapr | 2019-12-02 |
| kirby21.asl | 1.7.0 | Example ASL Data from the Multi-Modal MRI Reproducibility
Resource | John Muschelli | muschellij2/kirby21.asl.git | 2020-10-15 |
| kirby21.base | 1.7.3 | Example Data from the Multi-Modal MRI 'Reproducibility' Resource | John Muschelli | muschellij2/kirby21.base | 2020-10-15 |
| kirby21.det2 | 1.7.0 | Example DET2 Structural Data from the Multi-Modal MRI
Reproducibility Resource | John Muschelli | muschellij2/kirby21.det2 | 2020-10-15 |
| kirby21.dti | 1.7.0 | Example DTI Data from the Multi-Modal MRI Reproducibility
Resource | John Muschelli | muschellij2/kirby21.dti.git | 2020-10-15 |
| kirby21.flair | 1.7.0 | Example FLAIR Structural Data from the Multi-Modal MRI
Reproducibility Resource | John Muschelli | muschellij2/kirby21.flair | 2020-10-15 |
| kirby21.fmri | 1.7.0 | Example Functional Imaging Data from the Multi-Modal MRI
'Reproducibility' Resource | John Muschelli | muschellij2/kirby21.fmri | 2020-10-15 |
| kirby21.mricloud | 1.0.0 | A dataset containing correlation data for 20 subjects from
Kennedy Krieger | Adi Gherman | adigherman/kirby21.mricloud.git | 2020-10-15 |
| kirby21.mt | 1.7.0 | MT Structural Data from the Multi-Modal MRI Reproducibility
Resource | John Muschelli | muschellij2/kirby21.mt.git | 2019-12-02 |
| kirby21.smri | 1.5 | Example Structural Data from the Multi-Modal MRI Reproducibility
Resource | John Muschelli | muschellij2/kirby21.smri.git | 2020-10-15 |
| kirby21.t1 | 1.7.3.2 | Example T1 Structural Data from the Multi-Modal MRI
'Reproducibility' Resource | John Muschelli | muschellij2/kirby21.t1 | 2020-10-15 |
| kirby21.t2 | 1.7.0 | Example T2 Structural Data from the Multi-Modal MRI
Reproducibility Resource | John Muschelli | muschellij2/kirby21.t2 | 2020-10-15 |
| kirby21.vaso | 1.7.0 | Example VASO Data from the Multi-Modal MRI Reproducibility
Resource | John Muschelli | muschellij2/kirby21.vaso.git | 2020-10-15 |
| LESYMAP | 0.0.0.9221 | Lesion to Symptom Mapping in R | Dorian Pustina | dorianps/LESYMAP | 2019-12-02 |
| LINDA | 0.5.1 | Lesion Identification with Neighborhood Data Analysis | Dorian Pustina | dorianps/LINDA | 2019-12-02 |
| lungct | 0.7.6.1 | Processing of Lung Computed Tomography ('CT') Scans | John Muschelli | muschellij2/lungct | 2019-12-02 |
| malf.templates | 1.2.0 | Template Images for Multi-Atlas Label Fusion ('MALF') | John Muschelli | muschellij2/malf.templates | 2020-10-15 |
| medals | 0.3.0 | Performs Memory Efficient Decomposition for Analysis of Local
neighborhood moments for Segmentation | Jacob Maronge | JMMaronge/medals | 2019-12-02 |
| mimosa | 0.5.8 | 'MIMoSA': A Method for Inter-Modal Segmentation Analysis | Alessandra Valcarcel | avalcarcel9/mimosa | 2019-12-02 |
| mmand | 1.6.0 | Mathematical Morphology in Any Number of Dimensions | Jon Clayden | jonclayden/mmand | 2020-10-15 |
| mni | 0.2.0 | Human 'MNI' (Montreal Neurological Institute) Adult Templates | John Muschelli | muschellij2/mni | 2020-10-15 |
| MNITemplate | 1.0.0 | MNI MRI Template | Jean-Philippe Fortin | Jfortin1/MNITemplate | 2020-10-15 |
| MriCloudR | 0.9.3 | R wrapper for MriCloud API | Brian Caffo | bcaffo/MriCloudR.git | 2020-10-15 |
| MRIcloudT1volumetrics | 0.3.1 | MRIcloud Analysis of T1 Volumetric Output | Brian Caffo | bcaffo/MRIcloudT1volumetrics.git | 2020-10-15 |
| msmri | 0.3.1 | Open Multiple Sclerosis Magnetic Resonance Imaging Data | John Muschelli | muschellij2/msmri.git | 2020-10-15 |
| neurobase | 1.30.1 | 'Neuroconductor' Base Package with Helper Functions for 'nifti'
Objects | John Muschelli | muschellij2/neurobase | 2020-10-15 |
| neurocInstall | 0.12.1 | 'Neuroconductor' Installer | John Muschelli | muschellij2/neurocInstall.git | 2020-10-15 |
| neurocStats | 0.1.2 | Package that Retrieves Neuroconductor Stats | Adi Gherman | adigherman/neurocStats | 2019-11-26 |
| neurohcp | 0.9.0 | Human 'Connectome' Project Interface | John Muschelli | muschellij2/neurohcp.git | 2020-10-15 |
| neurovault | 0.5.6 | 'Neurovault' Database API Access | John Muschelli | muschellij2/neurovault | 2020-10-15 |
| NiftiArray | 0.99.6.1 | HDF5 Delayed Array for Nifti Objects | John Muschelli | muschellij2/NiftiArray | 2020-02-19 |
| nitrcbot | 1.2 | Download Image Files from the 'NeuroImaging Tools and Resources
Collaboratory' | Adi Gherman | adigherman/nitrcbot.git | 2020-10-15 |
| nsrr | 0.1.5 | Interface to National Sleep Research Resource | John Muschelli | muschellij2/nsrr | 2020-10-15 |
| oasis | 3.0.1 | Multiple Sclerosis Lesion Segmentation using Magnetic Resonance
Imaging (MRI) | Elizabeth M. Sweeney | emsweene/oasis | 2020-10-15 |
| oro.asl | 0.1.1 | Rigorous - Aterial Spin Labelling | Brandon Whitcher | bjw34032/oro.asl | 2020-10-15 |
| oro.dicom | 0.5.2.2 | Rigorous - DICOM Input / Output | Brandon Whitcher | bjw34032/oro.dicom | 2020-10-15 |
| oro.nifti | 0.10.3 | Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output | Brandon Whitcher | bjw34032/oro.nifti | 2020-10-15 |
| oro.pet | 0.2.5 | Rigorous - Positron Emission Tomography | Brandon Whitcher | bjw34032/oro.pet | 2020-10-15 |
| pain21 | 0.1.1 | 21 Pain Studies | Simon Vandekar | simonvandekar/pain21 | 2020-10-15 |
| papayar | 1.0 | View Medical Research Images using the Papaya JavaScript Library | John Muschelli | muschellij2/papayar | 2019-12-02 |
| papayaWidget | 0.7.1 | Embed an 'Papaya' Image Viewer | John Muschelli | muschellij2/papayaWidget | 2020-03-16 |
| pbj | 0.1.6 | Parametric Bootstrap Joint Testing Procedures for Neuroimaging | Simon Vandekar | simonvandekar/pbj | 2019-12-02 |
| penn115 | 0.1.1 | Template MRI Scan from 115 University of Pennsylvania Patients | John Muschelli | muschellij2/penn115 | 2020-10-15 |
| qMRI | 1.2 | Methods for Quantitative Magnetic Resonance Imaging ('qMRI') | Karsten Tabelow | WIAS-BERLIN/qMRI | 2020-10-15 |
| radtools | 1.0.7.2 | Utilities for Convenient Extraction of Medical Image Metadata | Pamela Russell | pamelarussell/radtools | 2020-10-15 |
| RAVEL | 1.2.2 | Removal of Artificial Voxel Effect by Linear Regression | Jean-Philippe Fortin | Jfortin1/RAVEL | 2019-12-02 |
| RAVELData | 0.99.1 | Example dataset of input data for RAVEL (4 scans) | Jean-Philippe Fortin | Jfortin1/RAVELData | 2020-10-15 |
| rcamino | 0.6.4 | Port of the Camino Software | John Muschelli | muschellij2/rcamino | 2020-10-15 |
| RIA | 1.4.2 | Radiomics Image Analysis Toolbox for Medial Images | Marton Kolossvary | cran/RIA | 2020-10-15 |
| RNifti | 1.2.3 | Fast R and C++ Access to NIfTI Images | Jon Clayden | jonclayden/RNifti.git | 2020-10-15 |
| RNiftyReg | 2.7.0 | Image Registration Using the 'NiftyReg' Library | Jon Clayden | jonclayden/RNiftyReg | 2020-10-15 |
| robex | 1.2.6.1 | Robust Brain Extraction ('ROBEX') | John Muschelli | muschellij2/robex | 2020-05-18 |
| ROpenCVLite | 0.3.410 | Install 'OpenCV' | Simon Garnier | swarm-lab/ROpenCVLite.git | 2019-12-02 |
| rtapas | 0.2.0 | TAPAS: A thresholding approach for probability map automatic
segmentation automatic segmentation | Alessandra Valcarcel | avalcarcel9/rtapas | 2020-03-27 |
| Rvision | 0.3.5 | Basic Computer Vision Library | Simon Garnier | swarm-lab/Rvision | 2019-12-02 |
| Rxnat | 1.0.14 | Queries and Extracts Images from Extensible Neuroimaging Archive
Toolkit Public/Private Datasets | Adi Gherman | adigherman/Rxnat.git | 2020-10-15 |
| smri.process | 0.8.4 | Processing of Structural Magnetic Resonance Imaging | John Muschelli | muschellij2/smri.process | 2019-12-02 |
| spant | 1.7.0 | MR Spectroscopy Analysis Tools | Martin Wilson | martin3141/spant | 2020-07-09 |
| spm12r | 2.8.1 | Wrapper Functions for 'SPM' (Statistical Parametric Mapping)
Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging' | John Muschelli | muschellij2/spm12r | 2020-10-15 |
| sri24 | 0.1.2 | SRI24 MRI Atlas for Normal Adult Brain Anatomy | John Muschelli | muschellij2/sri24 | 2020-10-15 |
| stapler | 0.7.2 | Simultaneous Truth and Performance Level Estimation | John Muschelli | muschellij2/stapler | 2020-10-15 |
| sublime | 1.3 | Automatic Lesion Incidence Estimation and Detection using
Multi-Modality Longitudinal Magnetic Resonance Images | Elizabeth M. Sweeney | emsweene/SuBLIME_package | 2020-10-15 |
| voxel | 1.3.5 | Mass-Univariate Voxelwise Analysis of Medical Imaging Data | Angel Garcia de la Garza | angelgar/voxel | 2020-10-15 |
| waveslim | 1.8.0 | Basic Wavelet Routines for One-, Two-, and Three-Dimensional
Signal Processing | Brandon Whitcher | bjw34032/waveslim.git | 2020-10-15 |
| WhiteStripe | 2.3.2 | White Matter Normalization for Magnetic Resonance Images using
WhiteStripe | John Muschelli | muschellij2/WhiteStripe | 2020-10-15 |
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