All Neuroconductor Packages

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Package Version Title Maintainer GitHub Last Updated
aal0.1.1Automated Anatomical Labeling ('AAL') Atlas John Muschelli muschellij2/aal 2019-08-06
afnir0.4.6Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages') John Muschelli muschellij2/afnir 2019-08-06
ANTsR0.5.1ANTs in R: Quantification Tools for Biomedical Images Brian B. Avants stnava/ANTsR 2019-08-18
ANTsRCore0.7.0Core Software Infrastructure for 'ANTsR' Brian B. Avants ANTsX/ANTsRCore 2019-08-11
bftools0.2.0BioFormats Tools John Muschelli muschellij2/bftools 2018-11-08
brainKCCA0.1.0Region-level Connectivity Network Construction via Kernel Canonical Correlation Analysis Jian Kang kangjian2016/brainKCCA 2019-08-06
brainR1.5.2.1Helper Functions to 'misc3d' and 'rgl' Packages for Brain Imaging John Muschelli muschellij2/brainR 2019-08-05
cap1.0Covariate Assisted Principal (CAP) Regression for Covariance Matrix Outcomes Yi Zhao zhaoyi1026/cap 2018-10-01
cfma1.0Causal Functional Mediation Analysis Yi Zhao zhaoyi1026/cfma 2018-09-27
cifti0.4.6.0Toolbox for Connectivity Informatics Technology Initiative ('CIFTI') Files John Muschelli muschellij2/cifti 2019-08-05
dcemriS40.57.1A Package for Image Analysis of DCE-MRI (S4 Implementation) Brandon Whitcher bjw34032/dcemriS4 2019-08-05
dcm2niir0.6.7.1Conversion of 'DICOM' to 'NIfTI' Imaging Files Through R John Muschelli muschellij2/dcm2niir.git 2019-07-16
dcmsort0.3.0Sort DICOM Images John Muschelli muschellij2/dcmsort 2019-08-11
dcmtk0.6.8Wrapper for 'DICOM' Toolkit ('DCMTK') John Muschelli muschellij2/dcmtk 2019-04-25
DensParcorr1.0Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks Yikai Wang johnzonwyk/DensParcorr 2018-09-27
divest0.8.1Get Images Out of DICOM Format Quickly Jon Clayden jonclayden/divest 2019-08-11
dti1.4.1Analysis of Diffusion Weighted Imaging (DWI) Data Karsten Tabelow WIAS-BERLIN/dti 2019-08-11
eegUtils0.4.0A collection of utilities for EEG analysis Matt Craddock craddm/eegUtils 2019-04-28
EveTemplate0.99.15JHU-MNI-ss (Eve) template Jean-Philippe Fortin Jfortin1/EveTemplate 2019-08-05
extrantsr3.9.10Extra Functions to Build on the 'ANTsR' Package John Muschelli muschellij2/extrantsr.git 2019-08-11
flexconn0.5.3.1FLEXCONN Model John Muschelli muschellij2/flexconn.git 2019-08-06
fmri1.9.1Analysis of fMRI Experiments Karsten Tabelow WIAS-BERLIN/fmri.git 2019-06-23
fmriqa0.4.0Functional MRI Quality Assurance Routines Martin Wilson martin3141/fmriqa 2019-08-05
freesurfer1.6.5Wrapper Functions for 'Freesurfer' John Muschelli muschellij2/freesurfer 2019-08-06
fslr2.24.1Wrapper Functions for 'FSL' ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB') John Muschelli muschellij2/fslr 2019-08-18
gganatogram1.1.1Create Anatograms of Various Species Jesper Maag jespermaag/gganatogram.git 2019-02-12
ggBrain0.1ggplot Brain Images Aaron Fisher aaronjfisher/ggBrain.git 2018-09-27
ggneuro0.5.0Plotting Functions for Neuroimaging Data in 'ggplot2' John Muschelli muschellij2/ggneuro.git 2019-08-06
ggseg1.5.2Plotting tool for brain atlases Athanasia Mo Mowinckel LCBC-UiO/ggseg 2019-08-11
ggsegExtra1.5Extra datasets for the ggseg-plotting tool Athanasia Mo Mowinckel LCBC-UiO/ggsegExtra 2019-08-11
gifti0.7.5.9001Reads in 'Neuroimaging' 'GIFTI' Files with Geometry Information John Muschelli muschellij2/gifti 2019-06-13
I2C20.2.4Image Intraclass Correlation Coefficient Haochang Shou muschellij2/I2C2.git 2019-08-18
ichseg0.16.1Intracerebral Hemorrhage Segmentation of X-Ray Computed Tomography (CT) Images John Muschelli muschellij2/ichseg.git 2019-08-12
ITKR0.5.1ITK in R Brian B. Avants stnava/ITKR 2019-08-18
itksnapr2.1Package of ITK-SNAP John Muschelli muschellij2/itksnapr 2019-08-06
kirby21.asl1.7.0Example ASL Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.asl.git 2018-09-26
kirby21.base1.7.0Example Data from the Multi-Modal MRI 'Reproducibility' Resource John Muschelli muschellij2/kirby21.base 2018-09-25
kirby21.det21.7.0Example DET2 Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.det2 2018-09-26
kirby21.dti1.7.0Example DTI Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.dti.git 2018-09-27
kirby21.flair1.7.0Example FLAIR Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.flair 2018-09-26
kirby21.fmri1.7.0Example Functional Imaging Data from the Multi-Modal MRI 'Reproducibility' Resource John Muschelli muschellij2/kirby21.fmri 2018-09-26
kirby21.mricloud0.0.0.9000A dataset containing correlation data for 20 subjects from Kennedy Krieger Adi Gherman adigherman/kirby21.mricloud.git 2018-09-26
kirby21.mt1.7.0MT Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/ 2018-09-27
kirby21.smri1.5Example Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.smri.git 2018-09-27
kirby21.t11.7.0Example T1 Structural Data from the Multi-Modal MRI 'Reproducibility' Resource John Muschelli muschellij2/kirby21.t1 2018-09-26
kirby21.t21.7.0Example T2 Structural Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.t2 2018-09-26
kirby21.vaso1.7.0Example VASO Data from the Multi-Modal MRI Reproducibility Resource John Muschelli muschellij2/kirby21.vaso.git 2018-09-26
LESYMAP0.0.0.9221Lesion to Symptom Mapping in R Dorian Pustina dorianps/LESYMAP 2019-08-05
LINDA0.5.0Lesion Identification with Neighborhood Data Analysis Dorian Pustina dorianps/LINDA 2019-08-05
lungct0.7.5Processing of Lung Computed Tomography ('CT') Scans John Muschelli muschellij2/lungct 2019-08-12
malf.templates0.3.1Template Images for Multi-Atlas Label Fusion ('MALF') John Muschelli muschellij2/malf.templates 2018-09-27
medals0.3.0Performs Memory Efficient Decomposition for Analysis of Local neighborhood moments for Segmentation Jacob Maronge JMMaronge/medals 2019-08-12
mimosa0.5.8'MIMoSA': A Method for Inter-Modal Segmentation Analysis Alessandra Valcarcel avalcarcel9/mimosa 2019-08-12
mni0.2.0Human 'MNI' (Montreal Neurological Institute) Adult Templates John Muschelli muschellij2/mni 2019-04-25
MNITemplate0.99.6MNI152 template Jean-Philippe Fortin Jfortin1/MNITemplate 2019-08-05
MriCloudR0.9.2R wrapper for MriCloud API Brian Caffo bcaffo/MriCloudR.git 2019-06-09
MRIcloudT1volumetrics0.3.1MRIcloud Analysis of T1 Volumetric Output Brian Caffo bcaffo/MRIcloudT1volumetrics.git 2019-08-04
msmri0.3.1Open Multiple Sclerosis Magnetic Resonance Imaging Data John Muschelli muschellij2/msmri.git 2018-09-27
neurobase1.27.11'Neuroconductor' Base Package with Helper Functions for 'nifti' Objects John Muschelli muschellij2/neurobase 2019-08-18
neurocInstall0.11.2'Neuroconductor' Installer John Muschelli muschellij2/neurocInstall.git 2019-07-14
neurocStats0.1.0Package that Retrieves Neuroconductor Stats Adi Gherman adigherman/neurocStats 2019-07-19
neurohcp0.8.1Human 'Connectome' Project Interface John Muschelli muschellij2/neurohcp.git 2018-09-27
neurovault0.5.5'Neurovault' Database API Access John Muschelli muschellij2/neurovault 2018-09-28
nitrcbot1.2Download Image Files from the 'NeuroImaging Tools and Resources Collaboratory' Adi Gherman adigherman/nitrcbot.git 2018-11-13
nsrr0.1.3Interface to National Sleep Research Resource John Muschelli muschellij2/nsrr 2019-06-18
oasis3.0.1Multiple Sclerosis Lesion Segmentation using Magnetic Resonance Imaging (MRI) Elizabeth M. Sweeney emsweene/oasis 2019-08-11
oro.asl0.1.1Rigorous - Aterial Spin Labelling Brandon Whitcher bjw34032/oro.asl 2018-10-02
oro.dicom0.5.2.2Rigorous - DICOM Input / Output Brandon Whitcher bjw34032/oro.dicom 2019-08-11
oro.nifti0.10.1Rigorous - 'NIfTI' + 'ANALYZE' + 'AFNI' : Input / Output Brandon Whitcher bjw34032/oro.nifti 2019-08-05
oro.pet0.2.5Rigorous - Positron Emission Tomography Brandon Whitcher bjw34032/ 2019-08-11
pain210.1.021 Pain Studies Simon Vandekar simonvandekar/pain21 2019-03-01
papayar1.0View Medical Research Images using the Papaya JavaScript Library John Muschelli muschellij2/papayar 2019-08-06
papayaWidget0.5.5Embed an 'Papaya' Image Viewer John Muschelli muschellij2/papayaWidget 2019-08-06
pbj0.1.5Parametric Bootstrap Joint Testing Procedures for Neuroimaging Simon Vandekar simonvandekar/pbj 2019-08-11
penn1150.1.1Template MRI Scan from 115 University of Pennsylvania Patients John Muschelli muschellij2/penn115 2019-08-06
radtools1.0.6Utilities for Convenient Extraction of Medical Image Metadata Pamela Russell pamelarussell/radtools 2019-08-11
RAVEL1.2.2Removal of Artificial Voxel Effect by Linear Regression Jean-Philippe Fortin Jfortin1/RAVEL 2019-08-07
RAVELData0.99.1Example dataset of input data for RAVEL Jean-Philippe Fortin Jfortin1/RAVELData 2019-04-25
rcamino0.6.3Port of the Camino Software John Muschelli muschellij2/rcamino 2019-08-06
RNifti0.11.1Fast R and C++ Access to NIfTI Images Jon Clayden jonclayden/RNifti.git 2019-08-04
RNiftyReg2.6.6Image Registration Using the 'NiftyReg' Library Jon Clayden jonclayden/RNiftyReg 2019-08-05
robex1.2.6Robust Brain Extraction ('ROBEX') John Muschelli muschellij2/robex 2019-08-06
ROpenCVLite0.3.410Install 'OpenCV' Simon Garnier swarm-lab/ROpenCVLite.git 2019-08-04
rtapas0.0.2TAPAS: A thresholding approach for probability map automatic segmentation automatic segmentation Alessandra Valcarcel avalcarcel9/rtapas 2019-08-06
Rvision0.3.6Basic Computer Vision Library Simon Garnier swarm-lab/Rvision 2019-08-05
Rxnat1.0.6Queries and Extracts Images from Extensible Neuroimaging Archive Toolkit Public/Private Datasets Adi Gherman adigherman/Rxnat.git 2019-06-30
smri.process0.8.1Processing of Structural Magnetic Resonance Imaging John Muschelli muschellij2/smri.process 2019-08-12
spant0.15.9000MR Spectroscopy Analysis Tools Martin Wilson martin3141/spant 2019-08-18
spm12r2.8.1Wrapper Functions for 'SPM' (Statistical Parametric Mapping) Version 12 from the 'Wellcome' Trust Centre for 'Neuroimaging' John Muschelli muschellij2/spm12r 2019-08-06
sri240.1.1SRI24 MRI Atlas for Normal Adult Brain Anatomy John Muschelli muschellij2/sri24 2018-09-28
stapler0.6.6Simultaneous Truth and Performance Level Estimation John Muschelli muschellij2/stapler 2019-08-05
sublime1.3Automatic Lesion Incidence Estimation and Detection using Multi-Modality Longitudinal Magnetic Resonance Images Elizabeth M. Sweeney emsweene/SuBLIME_package 2019-08-05
voxel1.3.5Mass-Univariate Voxelwise Analysis of Medical Imaging Data Angel Garcia de la Garza angelgar/voxel 2019-08-05
waveslim1.8.0Basic Wavelet Routines for One-, Two-, and Three-Dimensional Signal Processing Brandon Whitcher bjw34032/waveslim.git 2018-09-25
WhiteStripe2.3.1White Matter Normalization for Magnetic Resonance Images using WhiteStripe John Muschelli muschellij2/WhiteStripe 2019-08-05