Package afnir details
Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages')
Wrapper functions that interface with 'AFNI' (https://afni.nimh.nih.gov/afni), a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'AFNI' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'AFNI' command and returns an R object of class 'nifti' if desired.
Maintainer: John Muschelli < muschellij2 at gmail.com >
From within R, enter citation('afnir')
Cox RW (1996). "AFNI: software for analysis and visualization of
functional magnetic resonance neuroimages." _Computers and Biomedical
research_, *29*(3), 162-173.
A BibTeX entry for LaTeX users is
@Article{cox1996afni,
title = {AFNI: software for analysis and visualization of functional magnetic resonance neuroimages},
author = {Robert W Cox},
journal = {Computers and Biomedical research},
volume = {29},
number = {3},
pages = {162--173},
year = {1996},
publisher = {Elsevier},
}
If you have any problems with this package you can open a new issue or check the already existing ones here.
To install this package, start R and enter:
source("https://neuroconductor.org/neurocLite.R")
# Default Install
neuro_install('afnir')
# from GitHub
neuro_install('afnir', release = "stable", release_repo = "github")
neuro_install('afnir', release = "current", release_repo = "github")
More detailed installation instructions can be found here.
Initially submitted on | October 1 2018 4:44PM |
Last updated on | October 15 2020 2:50PM |
Package type | standard |
Source GitHub | https://github.com/muschellij2/afnir GitHub |
Neuroconductor GitHub | https://github.com/neuroconductor/afnir GitHub |
System requirements | AFNI |