Neuroconductor Tutorials

Guides

• Guides for Developers
  1. Preparing Your Package for Submission
  2. Changes to your Package
  3. Using Git Submodules
• NIfTI Basics
• Installing on the Windows Subsystem for Linux

FAQs

• Frequently Asked Questions (FAQ)

Package Installation Guides

• Installing devtools
• Installing ANTsR

Data Guides

• Downloading Human Connectome Project Data
• Downloading Functional Connectomes Projects
• Downloading XNAT Image Repository Data

Structural Imaging

1. Brain Extraction
2. Tissue-Class Segmentation
3. Rxnat Tissue-Class Segmentation Case Scenario
4. Labeling Brain Structures
5. Processing Within-Visit Structural MRI
6. Cortical Thickness Estimation (NOT DONE)
7. Resampling an Image
8. Brain Extraction for CT
9. Segmentation of Hemorrhagic Stroke in CT data

fMRI

1. Resting-State fMRI analysis using ANTsR
2. Resting-State fMRI analysis using fslr
3. Resting-State fMRI analysis using spm12r

DTI

1. DTI analysis with fslr
2. DTI analysis with Camino
3. DTI analysis with Camino with HCP data

Disease-specific Tutorials

1. Multiple Sclerosis Lesion Segmentation