2021-05-16T23:04:07.8260460Z ##[section]Starting: Request a runner to run this job 2021-05-16T23:04:08.1883285Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-16T23:04:08.2788217Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-16T23:04:08.3540854Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-16T23:04:08.4168210Z ##[section]Finishing: Request a runner to run this job 2021-05-16T23:04:16.3562564Z Current runner version: '2.278.0' 2021-05-16T23:04:16.3587498Z ##[group]Operating System 2021-05-16T23:04:16.3588373Z Ubuntu 2021-05-16T23:04:16.3588768Z 20.04.2 2021-05-16T23:04:16.3589193Z LTS 2021-05-16T23:04:16.3589633Z ##[endgroup] 2021-05-16T23:04:16.3590187Z ##[group]Virtual Environment 2021-05-16T23:04:16.3590752Z Environment: ubuntu-20.04 2021-05-16T23:04:16.3591305Z Version: 20210510.0 2021-05-16T23:04:16.3592207Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-16T23:04:16.3593602Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-16T23:04:16.3594839Z ##[endgroup] 2021-05-16T23:04:16.3596566Z ##[group]GITHUB_TOKEN Permissions 2021-05-16T23:04:16.3597662Z Actions: write 2021-05-16T23:04:16.3598189Z Checks: write 2021-05-16T23:04:16.3598651Z Contents: write 2021-05-16T23:04:16.3599181Z Deployments: write 2021-05-16T23:04:16.3599767Z Issues: write 2021-05-16T23:04:16.3600269Z Metadata: read 2021-05-16T23:04:16.3600739Z Packages: write 2021-05-16T23:04:16.3601289Z PullRequests: write 2021-05-16T23:04:16.3601852Z RepositoryProjects: write 2021-05-16T23:04:16.3602541Z SecurityEvents: write 2021-05-16T23:04:16.3602968Z Statuses: write 2021-05-16T23:04:16.3603489Z ##[endgroup] 2021-05-16T23:04:16.3605836Z Prepare workflow directory 2021-05-16T23:04:16.4590009Z Prepare all required actions 2021-05-16T23:04:16.4598997Z Getting action download info 2021-05-16T23:04:16.8326908Z Download action repository 'actions/checkout@v2' 2021-05-16T23:04:18.5004224Z Download action repository 'r-lib/actions@master' 2021-05-16T23:04:19.0206668Z Download action repository 'adigherman/actions@master' 2021-05-16T23:04:19.9893309Z Download action repository 'msys2/setup-msys2@v2' 2021-05-16T23:04:20.1502673Z Download action repository 'actions/cache@v1' 2021-05-16T23:04:20.3051243Z Download action repository 'actions/upload-artifact@master' 2021-05-16T23:04:20.4554991Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-16T23:04:20.7487432Z ##[group]Run actions/checkout@v2 2021-05-16T23:04:20.7488037Z with: 2021-05-16T23:04:20.7488524Z repository: neuroconductor/afnir 2021-05-16T23:04:20.7489498Z token: *** 2021-05-16T23:04:20.7489898Z ssh-strict: true 2021-05-16T23:04:20.7490413Z persist-credentials: true 2021-05-16T23:04:20.7490912Z clean: true 2021-05-16T23:04:20.7491304Z fetch-depth: 1 2021-05-16T23:04:20.7491705Z lfs: false 2021-05-16T23:04:20.7492096Z submodules: false 2021-05-16T23:04:20.7492490Z env: 2021-05-16T23:04:20.7492935Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:04:20.7493431Z TIC_DEPLOY_KEY: 2021-05-16T23:04:20.7494281Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:04:20.7495515Z GITHUB_PAT: *** 2021-05-16T23:04:20.7495938Z COVERALLS_TOKEN: 2021-05-16T23:04:20.7496426Z continue-on-error: true 2021-05-16T23:04:20.7496924Z VDIFFR_RUN_TESTS: 2021-05-16T23:04:20.7497323Z ##[endgroup] 2021-05-16T23:04:20.9751340Z Syncing repository: neuroconductor/afnir 2021-05-16T23:04:20.9752309Z ##[group]Getting Git version info 2021-05-16T23:04:20.9753438Z Working directory is '/home/runner/work/afnir/afnir' 2021-05-16T23:04:20.9771166Z [command]/usr/bin/git version 2021-05-16T23:04:20.9877114Z git version 2.31.1 2021-05-16T23:04:20.9898142Z ##[endgroup] 2021-05-16T23:04:20.9908543Z Deleting the contents of '/home/runner/work/afnir/afnir' 2021-05-16T23:04:20.9911717Z ##[group]Initializing the repository 2021-05-16T23:04:20.9912507Z [command]/usr/bin/git init /home/runner/work/afnir/afnir 2021-05-16T23:04:21.0019964Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-16T23:04:21.0021310Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-16T23:04:21.0022426Z hint: of your new repositories, which will suppress this warning, call: 2021-05-16T23:04:21.0023544Z hint: 2021-05-16T23:04:21.0024511Z hint: git config --global init.defaultBranch 2021-05-16T23:04:21.0025446Z hint: 2021-05-16T23:04:21.0026347Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-16T23:04:21.0027685Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-16T23:04:21.0028469Z hint: 2021-05-16T23:04:21.0029158Z hint: git branch -m 2021-05-16T23:04:21.0029948Z Initialized empty Git repository in /home/runner/work/afnir/afnir/.git/ 2021-05-16T23:04:21.0031030Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/afnir 2021-05-16T23:04:21.0067463Z ##[endgroup] 2021-05-16T23:04:21.0068065Z ##[group]Disabling automatic garbage collection 2021-05-16T23:04:21.0077159Z [command]/usr/bin/git config --local gc.auto 0 2021-05-16T23:04:21.0112506Z ##[endgroup] 2021-05-16T23:04:21.0122082Z ##[group]Setting up auth 2021-05-16T23:04:21.0132647Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-16T23:04:21.0174050Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-16T23:04:21.0545346Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-16T23:04:21.0618396Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-16T23:04:21.0867650Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-16T23:04:21.0921083Z ##[endgroup] 2021-05-16T23:04:21.0922108Z ##[group]Fetching the repository 2021-05-16T23:04:21.0930964Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +7fe9ee3bd7ff79de2cc83d261d5e09fdc178043e:refs/tags/0.4.6.s 2021-05-16T23:04:21.3401652Z remote: Enumerating objects: 85, done. 2021-05-16T23:04:21.3405842Z remote: Counting objects: 1% (1/85) 2021-05-16T23:04:21.3408517Z remote: Counting objects: 2% (2/85) 2021-05-16T23:04:21.3428687Z remote: Counting objects: 3% (3/85) 2021-05-16T23:04:21.3431385Z remote: Counting objects: 4% (4/85) 2021-05-16T23:04:21.3432866Z remote: Counting objects: 5% (5/85) 2021-05-16T23:04:21.3434523Z remote: Counting objects: 7% (6/85) 2021-05-16T23:04:21.3437225Z remote: Counting objects: 8% (7/85) 2021-05-16T23:04:21.3439287Z remote: Counting objects: 9% (8/85) 2021-05-16T23:04:21.3440604Z remote: Counting objects: 10% (9/85) 2021-05-16T23:04:21.3441988Z remote: Counting objects: 11% (10/85) 2021-05-16T23:04:21.3443256Z remote: Counting objects: 12% (11/85) 2021-05-16T23:04:21.3444810Z remote: Counting objects: 14% (12/85) 2021-05-16T23:04:21.3446032Z remote: Counting objects: 15% (13/85) 2021-05-16T23:04:21.3447268Z remote: Counting objects: 16% (14/85) 2021-05-16T23:04:21.3448434Z remote: Counting objects: 17% (15/85) 2021-05-16T23:04:21.3449607Z remote: Counting objects: 18% (16/85) 2021-05-16T23:04:21.3450748Z remote: Counting objects: 20% (17/85) 2021-05-16T23:04:21.3451887Z remote: Counting objects: 21% (18/85) 2021-05-16T23:04:21.3453012Z remote: Counting objects: 22% (19/85) 2021-05-16T23:04:21.3454154Z remote: Counting objects: 23% (20/85) 2021-05-16T23:04:21.3455313Z remote: Counting objects: 24% (21/85) 2021-05-16T23:04:21.3456493Z remote: Counting objects: 25% (22/85) 2021-05-16T23:04:21.3457653Z remote: Counting objects: 27% (23/85) 2021-05-16T23:04:21.3458717Z remote: Counting objects: 28% (24/85) 2021-05-16T23:04:21.3459795Z remote: Counting objects: 29% (25/85) 2021-05-16T23:04:21.3460888Z remote: Counting objects: 30% (26/85) 2021-05-16T23:04:21.3461986Z remote: Counting objects: 31% (27/85) 2021-05-16T23:04:21.3463435Z remote: Counting objects: 32% (28/85) 2021-05-16T23:04:21.3464774Z remote: Counting objects: 34% (29/85) 2021-05-16T23:04:21.3465798Z remote: Counting objects: 35% (30/85) 2021-05-16T23:04:21.3466809Z remote: Counting objects: 36% (31/85) 2021-05-16T23:04:21.3467838Z remote: Counting objects: 37% (32/85) 2021-05-16T23:04:21.3468839Z remote: Counting objects: 38% (33/85) 2021-05-16T23:04:21.3469854Z remote: Counting objects: 40% (34/85) 2021-05-16T23:04:21.3470861Z remote: Counting objects: 41% (35/85) 2021-05-16T23:04:21.3471883Z remote: Counting objects: 42% (36/85) 2021-05-16T23:04:21.3472887Z remote: Counting objects: 43% (37/85) 2021-05-16T23:04:21.3478163Z remote: Counting objects: 44% (38/85) 2021-05-16T23:04:21.3479826Z remote: Counting objects: 45% (39/85) 2021-05-16T23:04:21.3480884Z remote: Counting objects: 47% (40/85) 2021-05-16T23:04:21.3481936Z remote: Counting objects: 48% (41/85) 2021-05-16T23:04:21.3482953Z remote: Counting objects: 49% (42/85) 2021-05-16T23:04:21.3483977Z remote: Counting objects: 50% (43/85) 2021-05-16T23:04:21.3484985Z remote: Counting objects: 51% (44/85) 2021-05-16T23:04:21.3486002Z remote: Counting objects: 52% (45/85) 2021-05-16T23:04:21.3487023Z remote: Counting objects: 54% (46/85) 2021-05-16T23:04:21.3487608Z remote: Counting objects: 55% (47/85) 2021-05-16T23:04:21.3488184Z remote: Counting objects: 56% (48/85) 2021-05-16T23:04:21.3488756Z remote: Counting objects: 57% (49/85) 2021-05-16T23:04:21.3489341Z remote: Counting objects: 58% (50/85) 2021-05-16T23:04:21.3489909Z remote: Counting objects: 60% (51/85) 2021-05-16T23:04:21.3490492Z remote: Counting objects: 61% (52/85) 2021-05-16T23:04:21.3491129Z remote: Counting objects: 62% (53/85) 2021-05-16T23:04:21.3491601Z remote: Counting objects: 63% (54/85) 2021-05-16T23:04:21.3492189Z remote: Counting objects: 64% (55/85) 2021-05-16T23:04:21.3492667Z remote: Counting objects: 65% (56/85) 2021-05-16T23:04:21.3493138Z remote: Counting objects: 67% (57/85) 2021-05-16T23:04:21.3493818Z remote: Counting objects: 68% (58/85) 2021-05-16T23:04:21.3494357Z remote: Counting objects: 69% (59/85) 2021-05-16T23:04:21.3494884Z remote: Counting objects: 70% (60/85) 2021-05-16T23:04:21.3495429Z remote: Counting objects: 71% (61/85) 2021-05-16T23:04:21.3495953Z remote: Counting objects: 72% (62/85) 2021-05-16T23:04:21.3496489Z remote: Counting objects: 74% (63/85) 2021-05-16T23:04:21.3497017Z remote: Counting objects: 75% (64/85) 2021-05-16T23:04:21.3497556Z remote: Counting objects: 76% (65/85) 2021-05-16T23:04:21.3498094Z remote: Counting objects: 77% (66/85) 2021-05-16T23:04:21.3498799Z remote: Counting objects: 78% (67/85) 2021-05-16T23:04:21.3499391Z remote: Counting objects: 80% (68/85) 2021-05-16T23:04:21.3499958Z remote: Counting objects: 81% (69/85) 2021-05-16T23:04:21.3500535Z remote: Counting objects: 82% (70/85) 2021-05-16T23:04:21.3501104Z remote: Counting objects: 83% (71/85) 2021-05-16T23:04:21.3501682Z remote: Counting objects: 84% (72/85) 2021-05-16T23:04:21.3502252Z remote: Counting objects: 85% (73/85) 2021-05-16T23:04:21.3502831Z remote: Counting objects: 87% (74/85) 2021-05-16T23:04:21.3503403Z remote: Counting objects: 88% (75/85) 2021-05-16T23:04:21.3503980Z remote: Counting objects: 89% (76/85) 2021-05-16T23:04:21.3504591Z remote: Counting objects: 90% (77/85) 2021-05-16T23:04:21.3505162Z remote: Counting objects: 91% (78/85) 2021-05-16T23:04:21.3505743Z remote: Counting objects: 92% (79/85) 2021-05-16T23:04:21.3506302Z remote: Counting objects: 94% (80/85) 2021-05-16T23:04:21.3506875Z remote: Counting objects: 95% (81/85) 2021-05-16T23:04:21.3507525Z remote: Counting objects: 96% (82/85) 2021-05-16T23:04:21.3508110Z remote: Counting objects: 97% (83/85) 2021-05-16T23:04:21.3508670Z remote: Counting objects: 98% (84/85) 2021-05-16T23:04:21.3509254Z remote: Counting objects: 100% (85/85) 2021-05-16T23:04:21.3509862Z remote: Counting objects: 100% (85/85), done. 2021-05-16T23:04:21.3510491Z remote: Compressing objects: 1% (1/82) 2021-05-16T23:04:21.3511135Z remote: Compressing objects: 2% (2/82) 2021-05-16T23:04:21.3511865Z remote: Compressing objects: 3% (3/82) 2021-05-16T23:04:21.3512452Z remote: Compressing objects: 4% (4/82) 2021-05-16T23:04:21.3513228Z remote: Compressing objects: 6% (5/82) 2021-05-16T23:04:21.3513969Z remote: Compressing objects: 7% (6/82) 2021-05-16T23:04:21.3514834Z remote: Compressing objects: 8% (7/82) 2021-05-16T23:04:21.3515459Z remote: Compressing objects: 9% (8/82) 2021-05-16T23:04:21.3516103Z remote: Compressing objects: 10% (9/82) 2021-05-16T23:04:21.3516723Z remote: Compressing objects: 12% (10/82) 2021-05-16T23:04:21.3517358Z remote: Compressing objects: 13% (11/82) 2021-05-16T23:04:21.3517988Z remote: Compressing objects: 14% (12/82) 2021-05-16T23:04:21.3518621Z remote: Compressing objects: 15% (13/82) 2021-05-16T23:04:21.3519249Z remote: Compressing objects: 17% (14/82) 2021-05-16T23:04:21.3519872Z remote: Compressing objects: 18% (15/82) 2021-05-16T23:04:21.3520508Z remote: Compressing objects: 19% (16/82) 2021-05-16T23:04:21.3521129Z remote: Compressing objects: 20% (17/82) 2021-05-16T23:04:21.3521757Z remote: Compressing objects: 21% (18/82) 2021-05-16T23:04:21.3522382Z remote: Compressing objects: 23% (19/82) 2021-05-16T23:04:21.3523018Z remote: Compressing objects: 24% (20/82) 2021-05-16T23:04:21.3523634Z remote: Compressing objects: 25% (21/82) 2021-05-16T23:04:21.3524355Z remote: Compressing objects: 26% (22/82) 2021-05-16T23:04:21.3524998Z remote: Compressing objects: 28% (23/82) 2021-05-16T23:04:21.3525623Z remote: Compressing objects: 29% (24/82) 2021-05-16T23:04:21.3526333Z remote: Compressing objects: 30% (25/82) 2021-05-16T23:04:21.3526912Z remote: Compressing objects: 31% (26/82) 2021-05-16T23:04:21.3527555Z remote: Compressing objects: 32% (27/82) 2021-05-16T23:04:21.3545470Z remote: Compressing objects: 34% (28/82) 2021-05-16T23:04:21.3546099Z remote: Compressing objects: 35% (29/82) 2021-05-16T23:04:21.3546971Z remote: Compressing objects: 36% (30/82) 2021-05-16T23:04:21.3547565Z remote: Compressing objects: 37% (31/82) 2021-05-16T23:04:21.3548153Z remote: Compressing objects: 39% (32/82) 2021-05-16T23:04:21.3548733Z remote: Compressing objects: 40% (33/82) 2021-05-16T23:04:21.3549325Z remote: Compressing objects: 41% (34/82) 2021-05-16T23:04:21.3550008Z remote: Compressing objects: 42% (35/82) 2021-05-16T23:04:21.3550600Z remote: Compressing objects: 43% (36/82) 2021-05-16T23:04:21.3551172Z remote: Compressing objects: 45% (37/82) 2021-05-16T23:04:21.3551763Z remote: Compressing objects: 46% (38/82) 2021-05-16T23:04:21.3552337Z remote: Compressing objects: 47% (39/82) 2021-05-16T23:04:21.3552926Z remote: Compressing objects: 48% (40/82) 2021-05-16T23:04:21.3553514Z remote: Compressing objects: 50% (41/82) 2021-05-16T23:04:21.3554264Z remote: Compressing objects: 51% (42/82) 2021-05-16T23:04:21.3554858Z remote: Compressing objects: 52% (43/82) 2021-05-16T23:04:21.3555645Z remote: Compressing objects: 53% (44/82) 2021-05-16T23:04:21.3556234Z remote: Compressing objects: 54% (45/82) 2021-05-16T23:04:21.3556810Z remote: Compressing objects: 56% (46/82) 2021-05-16T23:04:21.3557396Z remote: Compressing objects: 57% (47/82) 2021-05-16T23:04:21.3558130Z remote: Compressing objects: 58% (48/82) 2021-05-16T23:04:21.3558705Z remote: Compressing objects: 59% (49/82) 2021-05-16T23:04:21.3559290Z remote: Compressing objects: 60% (50/82) 2021-05-16T23:04:21.3559865Z remote: Compressing objects: 62% (51/82) 2021-05-16T23:04:21.3560452Z remote: Compressing objects: 63% (52/82) 2021-05-16T23:04:21.3561027Z remote: Compressing objects: 64% (53/82) 2021-05-16T23:04:21.3561616Z remote: Compressing objects: 65% (54/82) 2021-05-16T23:04:21.3562192Z remote: Compressing objects: 67% (55/82) 2021-05-16T23:04:21.3562780Z remote: Compressing objects: 68% (56/82) 2021-05-16T23:04:21.3563368Z remote: Compressing objects: 69% (57/82) 2021-05-16T23:04:21.3563945Z remote: Compressing objects: 70% (58/82) 2021-05-16T23:04:21.3564532Z remote: Compressing objects: 71% (59/82) 2021-05-16T23:04:21.3565103Z remote: Compressing objects: 73% (60/82) 2021-05-16T23:04:21.3565699Z remote: Compressing objects: 74% (61/82) 2021-05-16T23:04:21.3566279Z remote: Compressing objects: 75% (62/82) 2021-05-16T23:04:21.3566870Z remote: Compressing objects: 76% (63/82) 2021-05-16T23:04:21.3567446Z remote: Compressing objects: 78% (64/82) 2021-05-16T23:04:21.3568034Z remote: Compressing objects: 79% (65/82) 2021-05-16T23:04:21.3568625Z remote: Compressing objects: 80% (66/82) 2021-05-16T23:04:21.3569200Z remote: Compressing objects: 81% (67/82) 2021-05-16T23:04:21.3569786Z remote: Compressing objects: 82% (68/82) 2021-05-16T23:04:21.3570483Z remote: Compressing objects: 84% (69/82) 2021-05-16T23:04:21.3570999Z remote: Compressing objects: 85% (70/82) 2021-05-16T23:04:21.3571499Z remote: Compressing objects: 86% (71/82) 2021-05-16T23:04:21.3572011Z remote: Compressing objects: 87% (72/82) 2021-05-16T23:04:21.3572515Z remote: Compressing objects: 89% (73/82) 2021-05-16T23:04:21.3573091Z remote: Compressing objects: 90% (74/82) 2021-05-16T23:04:21.3573609Z remote: Compressing objects: 91% (75/82) 2021-05-16T23:04:21.3574112Z remote: Compressing objects: 92% (76/82) 2021-05-16T23:04:21.3574629Z remote: Compressing objects: 93% (77/82) 2021-05-16T23:04:21.3575133Z remote: Compressing objects: 95% (78/82) 2021-05-16T23:04:21.3575834Z remote: Compressing objects: 96% (79/82) 2021-05-16T23:04:21.3576411Z remote: Compressing objects: 97% (80/82) 2021-05-16T23:04:21.3577000Z remote: Compressing objects: 98% (81/82) 2021-05-16T23:04:21.3577572Z remote: Compressing objects: 100% (82/82) 2021-05-16T23:04:21.3578189Z remote: Compressing objects: 100% (82/82), done. 2021-05-16T23:04:21.3579593Z remote: Total 85 (delta 10), reused 36 (delta 0), pack-reused 0 2021-05-16T23:04:21.9983029Z From https://github.com/neuroconductor/afnir 2021-05-16T23:04:22.0050414Z * [new ref] 7fe9ee3bd7ff79de2cc83d261d5e09fdc178043e -> 0.4.6.s 2021-05-16T23:04:22.0051906Z ##[endgroup] 2021-05-16T23:04:22.0052924Z ##[group]Determining the checkout info 2021-05-16T23:04:22.0053664Z ##[endgroup] 2021-05-16T23:04:22.0054321Z ##[group]Checking out the ref 2021-05-16T23:04:22.0055831Z [command]/usr/bin/git checkout --progress --force refs/tags/0.4.6.s 2021-05-16T23:04:22.0056911Z Note: switching to 'refs/tags/0.4.6.s'. 2021-05-16T23:04:22.0057426Z 2021-05-16T23:04:22.0058445Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-16T23:04:22.0059375Z changes and commit them, and you can discard any commits you make in this 2021-05-16T23:04:22.0060250Z state without impacting any branches by switching back to a branch. 2021-05-16T23:04:22.0060747Z 2021-05-16T23:04:22.0061320Z If you want to create a new branch to retain commits you create, you may 2021-05-16T23:04:22.0062343Z do so (now or later) by using -c with the switch command. Example: 2021-05-16T23:04:22.0063130Z 2021-05-16T23:04:22.0063782Z git switch -c 2021-05-16T23:04:22.0064147Z 2021-05-16T23:04:22.0064647Z Or undo this operation with: 2021-05-16T23:04:22.0065068Z 2021-05-16T23:04:22.0065578Z git switch - 2021-05-16T23:04:22.0065939Z 2021-05-16T23:04:22.0066602Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-16T23:04:22.0067154Z 2021-05-16T23:04:22.0067693Z HEAD is now at 7fe9ee3 Version id 72 stable 2021-05-16T23:04:22.0068300Z ##[endgroup] 2021-05-16T23:04:22.0069050Z [command]/usr/bin/git log -1 --format='%H' 2021-05-16T23:04:22.0070084Z '7fe9ee3bd7ff79de2cc83d261d5e09fdc178043e' 2021-05-16T23:04:22.0190745Z ##[group]Run r-lib/actions/setup-r@master 2021-05-16T23:04:22.0191280Z with: 2021-05-16T23:04:22.0191689Z r-version: devel 2021-05-16T23:04:22.0192116Z Ncpus: 1 2021-05-16T23:04:22.0192568Z crayon.enabled: NULL 2021-05-16T23:04:22.0194091Z remove-openmp-macos: true 2021-05-16T23:04:22.0194718Z http-user-agent: default 2021-05-16T23:04:22.0195258Z install-r: true 2021-05-16T23:04:22.0195897Z windows-path-include-mingw: true 2021-05-16T23:04:22.0196504Z env: 2021-05-16T23:04:22.0196986Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:04:22.0197512Z TIC_DEPLOY_KEY: 2021-05-16T23:04:22.0198424Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:04:22.0200132Z GITHUB_PAT: *** 2021-05-16T23:04:22.0200588Z COVERALLS_TOKEN: 2021-05-16T23:04:22.0201118Z continue-on-error: true 2021-05-16T23:04:22.0201649Z VDIFFR_RUN_TESTS: 2021-05-16T23:04:22.0202077Z ##[endgroup] 2021-05-16T23:04:24.4346351Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-16T23:04:26.5610390Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-16T23:04:26.5612639Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-16T23:04:26.5614547Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-16T23:04:26.5998441Z Get:4 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-16T23:04:26.6030877Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-16T23:04:26.6104613Z Get:6 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-16T23:04:26.6867365Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-16T23:04:26.8445069Z Get:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-16T23:04:26.8865181Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-16T23:04:26.9189137Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [222 kB] 2021-05-16T23:04:26.9201150Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-16T23:04:26.9225997Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-16T23:04:26.9231756Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-16T23:04:26.9243806Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [774 kB] 2021-05-16T23:04:26.9331369Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [166 kB] 2021-05-16T23:04:26.9352100Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.4 kB] 2021-05-16T23:04:27.0864878Z Hit:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-16T23:04:27.1247466Z Get:18 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.2 kB] 2021-05-16T23:04:27.3222518Z Get:19 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [655 kB] 2021-05-16T23:04:27.4276731Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [131 kB] 2021-05-16T23:04:27.4298349Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-16T23:04:27.4300699Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-16T23:04:27.4324716Z Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-16T23:04:27.4334504Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [565 kB] 2021-05-16T23:04:27.4491235Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.0 kB] 2021-05-16T23:04:36.0204111Z Fetched 4463 kB in 1s (3823 kB/s) 2021-05-16T23:04:36.8090291Z Reading package lists... 2021-05-16T23:04:36.8307388Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-16T23:04:38.7814155Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-16T23:04:38.8539659Z Reading package lists... 2021-05-16T23:04:38.9969325Z Building dependency tree... 2021-05-16T23:04:38.9982648Z Reading state information... 2021-05-16T23:04:39.1615453Z The following additional packages will be installed: 2021-05-16T23:04:39.1618208Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-16T23:04:39.1621055Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-16T23:04:39.1624182Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-16T23:04:39.1627312Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-16T23:04:39.1630408Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-16T23:04:39.1633030Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-16T23:04:39.1636385Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-16T23:04:39.1639476Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-16T23:04:39.1642362Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-16T23:04:39.1645045Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-16T23:04:39.1649508Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-16T23:04:39.1652506Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-16T23:04:39.1655939Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-16T23:04:39.1659929Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-16T23:04:39.1663355Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-16T23:04:39.1667535Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-16T23:04:39.1672276Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-16T23:04:39.1677272Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-16T23:04:39.1683116Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-16T23:04:39.1687117Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-16T23:04:39.1690529Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-16T23:04:39.1693144Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-16T23:04:39.1696097Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-16T23:04:39.1699189Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-16T23:04:39.1702087Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-16T23:04:39.1703822Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-16T23:04:39.1705344Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-16T23:04:39.1706938Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-16T23:04:39.1708452Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-16T23:04:39.1710036Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-16T23:04:39.1711524Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-16T23:04:39.1713485Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-16T23:04:39.1715389Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-16T23:04:39.1716855Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-16T23:04:39.1718336Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-16T23:04:39.1719831Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-16T23:04:39.1721277Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-16T23:04:39.1722536Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-16T23:04:39.1723286Z Suggested packages: 2021-05-16T23:04:39.1724195Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-16T23:04:39.1725467Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-16T23:04:39.1726844Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-16T23:04:39.1728179Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-16T23:04:39.1729521Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-16T23:04:39.1730721Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-16T23:04:39.1731988Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-16T23:04:39.1733383Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-16T23:04:39.1735336Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-16T23:04:39.1736891Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-16T23:04:39.6946994Z The following NEW packages will be installed: 2021-05-16T23:04:39.6951143Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-16T23:04:39.6952659Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-16T23:04:39.6954708Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-16T23:04:39.6958251Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-16T23:04:39.6959890Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-16T23:04:39.6961506Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-16T23:04:39.6963126Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-16T23:04:39.6966201Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-16T23:04:39.6968084Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-16T23:04:39.6970427Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-16T23:04:39.6973736Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-16T23:04:39.6982859Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-16T23:04:39.6984746Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-16T23:04:39.6990082Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-16T23:04:39.6991897Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-16T23:04:39.6993439Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-16T23:04:39.6995335Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-16T23:04:39.6997269Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-16T23:04:39.6999345Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-16T23:04:39.7001137Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-16T23:04:39.7002703Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-16T23:04:39.7004324Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-16T23:04:39.7006076Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-16T23:04:39.7008412Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-16T23:04:39.7010279Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-16T23:04:39.7011915Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-16T23:04:39.7013717Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-16T23:04:39.7060468Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-16T23:04:39.7062540Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-16T23:04:39.7064899Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-16T23:04:39.7066891Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-16T23:04:39.7070185Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-16T23:04:39.7072463Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-16T23:04:39.7074245Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-16T23:04:39.7075907Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-16T23:04:39.7077508Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-16T23:04:39.7079054Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-16T23:04:39.7080836Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-16T23:04:39.7286679Z 0 upgraded, 130 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:04:39.7287727Z Need to get 8648 kB of archives. 2021-05-16T23:04:39.7288567Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-16T23:04:39.7290474Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-16T23:04:39.7318416Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-16T23:04:39.7324783Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-16T23:04:39.7332282Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-16T23:04:39.7338055Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-16T23:04:39.7359840Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-16T23:04:39.7367547Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-16T23:04:39.7373661Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-16T23:04:39.7382795Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-16T23:04:39.7396467Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-16T23:04:39.7399928Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-16T23:04:39.7402165Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-16T23:04:39.7419244Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-16T23:04:39.7421576Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-16T23:04:39.7423407Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-16T23:04:39.7425837Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-16T23:04:39.7438256Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-16T23:04:39.7451553Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-16T23:04:39.7462355Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-16T23:04:39.7553221Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-16T23:04:39.7576769Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-16T23:04:39.7596611Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-16T23:04:39.7607339Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-16T23:04:39.7623828Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-16T23:04:39.7640149Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-16T23:04:39.7714829Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-16T23:04:39.7724022Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-16T23:04:39.7739113Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-16T23:04:39.7752673Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-16T23:04:39.7762849Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-16T23:04:39.7770408Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-16T23:04:39.7775514Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-16T23:04:39.7784979Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-16T23:04:39.7796063Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-16T23:04:39.7803572Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-16T23:04:39.7810979Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-16T23:04:39.7820253Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-16T23:04:39.7827705Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-16T23:04:39.7838142Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-16T23:04:39.7844632Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-16T23:04:39.7852176Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-16T23:04:39.7860663Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-16T23:04:39.7869424Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-16T23:04:39.7879005Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-16T23:04:39.7887059Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-16T23:04:39.7897712Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-16T23:04:39.7914438Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-16T23:04:39.7921810Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-16T23:04:39.7929103Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-16T23:04:39.7940537Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-16T23:04:39.7948154Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-16T23:04:39.7984101Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-16T23:04:39.7992898Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-16T23:04:39.8000825Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-16T23:04:39.8009487Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-16T23:04:39.8017852Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-16T23:04:39.8024494Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-16T23:04:39.8029278Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-16T23:04:39.8040694Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-16T23:04:39.8048025Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-16T23:04:39.8080863Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-16T23:04:39.8094338Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-16T23:04:39.8105592Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-16T23:04:39.8114787Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-16T23:04:39.8122819Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-16T23:04:39.8132412Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-16T23:04:39.8139481Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-16T23:04:39.8150807Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-16T23:04:39.8166316Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-16T23:04:39.8178677Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-16T23:04:39.8211962Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-16T23:04:39.8216590Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-16T23:04:39.8220489Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-16T23:04:39.8223355Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-16T23:04:39.8225421Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-16T23:04:39.8231135Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-16T23:04:39.8274191Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-16T23:04:39.8288641Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-16T23:04:39.8353156Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-16T23:04:39.8355407Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-16T23:04:39.8357208Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-16T23:04:39.8359211Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-16T23:04:39.8363524Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-16T23:04:39.8365484Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-16T23:04:39.8374345Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-16T23:04:39.8380306Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-16T23:04:39.8387714Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-16T23:04:39.8398568Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-16T23:04:39.8414436Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-16T23:04:39.8423620Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-16T23:04:39.8427490Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-16T23:04:39.8434308Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-16T23:04:39.8442300Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-16T23:04:39.8454428Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-16T23:04:39.8522184Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-16T23:04:39.8534227Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-16T23:04:39.8544921Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-16T23:04:39.8558242Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-16T23:04:39.8570545Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-16T23:04:39.8580736Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-16T23:04:39.8590551Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-16T23:04:39.8655768Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-16T23:04:39.8680489Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-16T23:04:39.8688080Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-16T23:04:39.8699943Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-16T23:04:39.8708701Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-16T23:04:39.8822490Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-16T23:04:39.8824720Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-16T23:04:39.8829600Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-16T23:04:39.8831515Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-16T23:04:39.8852608Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-16T23:04:39.8854774Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-16T23:04:39.8856799Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-16T23:04:39.8858676Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-16T23:04:39.8860610Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-16T23:04:39.8862378Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-16T23:04:39.8864131Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-16T23:04:39.8866014Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-16T23:04:39.8868569Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-16T23:04:39.8875523Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-16T23:04:39.8882000Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-16T23:04:39.8890006Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-16T23:04:39.8894784Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-16T23:04:39.8918412Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-16T23:04:39.8923576Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-16T23:04:39.8959089Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-16T23:04:39.9109542Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-16T23:04:39.9129714Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-16T23:04:39.9132227Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-16T23:04:39.9200762Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-16T23:04:40.6768234Z Fetched 8648 kB in 0s (42.0 MB/s) 2021-05-16T23:04:40.7438766Z Selecting previously unselected package dctrl-tools. 2021-05-16T23:04:40.7946035Z (Reading database ... 2021-05-16T23:04:40.7947455Z (Reading database ... 5% 2021-05-16T23:04:40.7948656Z (Reading database ... 10% 2021-05-16T23:04:40.7949829Z (Reading database ... 15% 2021-05-16T23:04:40.7950818Z (Reading database ... 20% 2021-05-16T23:04:40.7951830Z (Reading database ... 25% 2021-05-16T23:04:40.7952819Z (Reading database ... 30% 2021-05-16T23:04:40.7953988Z (Reading database ... 35% 2021-05-16T23:04:40.7955001Z (Reading database ... 40% 2021-05-16T23:04:40.7956002Z (Reading database ... 45% 2021-05-16T23:04:40.7957003Z (Reading database ... 50% 2021-05-16T23:04:41.1698030Z (Reading database ... 55% 2021-05-16T23:04:41.7809086Z (Reading database ... 60% 2021-05-16T23:04:42.2166563Z (Reading database ... 65% 2021-05-16T23:04:42.8182789Z (Reading database ... 70% 2021-05-16T23:04:43.4717504Z (Reading database ... 75% 2021-05-16T23:04:44.1922594Z (Reading database ... 80% 2021-05-16T23:04:44.9947420Z (Reading database ... 85% 2021-05-16T23:04:45.8765329Z (Reading database ... 90% 2021-05-16T23:04:46.6319383Z (Reading database ... 95% 2021-05-16T23:04:46.6320339Z (Reading database ... 100% 2021-05-16T23:04:46.6321499Z (Reading database ... 254809 files and directories currently installed.) 2021-05-16T23:04:46.6455581Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-16T23:04:46.6654390Z Unpacking dctrl-tools (2.24-3) ... 2021-05-16T23:04:46.7093964Z Selecting previously unselected package libfile-which-perl. 2021-05-16T23:04:46.7360613Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-16T23:04:46.7372643Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-16T23:04:46.7676567Z Selecting previously unselected package libfile-homedir-perl. 2021-05-16T23:04:46.7904606Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb ... 2021-05-16T23:04:46.7917240Z Unpacking libfile-homedir-perl (1.004-1) ... 2021-05-16T23:04:46.8277027Z Selecting previously unselected package libio-pty-perl. 2021-05-16T23:04:46.8491532Z Preparing to unpack .../003-libio-pty-perl_1%3a1.12-1_amd64.deb ... 2021-05-16T23:04:46.8502324Z Unpacking libio-pty-perl (1:1.12-1) ... 2021-05-16T23:04:46.8835824Z Selecting previously unselected package libipc-run-perl. 2021-05-16T23:04:46.9053041Z Preparing to unpack .../004-libipc-run-perl_20180523.0-2_all.deb ... 2021-05-16T23:04:46.9064263Z Unpacking libipc-run-perl (20180523.0-2) ... 2021-05-16T23:04:46.9435943Z Selecting previously unselected package libclass-method-modifiers-perl. 2021-05-16T23:04:46.9626659Z Preparing to unpack .../005-libclass-method-modifiers-perl_2.13-1_all.deb ... 2021-05-16T23:04:46.9640930Z Unpacking libclass-method-modifiers-perl (2.13-1) ... 2021-05-16T23:04:46.9916041Z Selecting previously unselected package libb-hooks-op-check-perl. 2021-05-16T23:04:47.0103279Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ... 2021-05-16T23:04:47.0114347Z Unpacking libb-hooks-op-check-perl (0.22-1build2) ... 2021-05-16T23:04:47.0396158Z Selecting previously unselected package libdynaloader-functions-perl. 2021-05-16T23:04:47.0580399Z Preparing to unpack .../007-libdynaloader-functions-perl_0.003-1_all.deb ... 2021-05-16T23:04:47.0590906Z Unpacking libdynaloader-functions-perl (0.003-1) ... 2021-05-16T23:04:47.0876231Z Selecting previously unselected package libdevel-callchecker-perl. 2021-05-16T23:04:47.1094328Z Preparing to unpack .../008-libdevel-callchecker-perl_0.008-1ubuntu1_amd64.deb ... 2021-05-16T23:04:47.1107113Z Unpacking libdevel-callchecker-perl (0.008-1ubuntu1) ... 2021-05-16T23:04:47.1384313Z Selecting previously unselected package libparams-classify-perl. 2021-05-16T23:04:47.1661432Z Preparing to unpack .../009-libparams-classify-perl_0.015-1build2_amd64.deb ... 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2021-05-16T23:05:19.1954983Z [command]sudo apt-get install -y texinfo 2021-05-16T23:05:19.5394901Z Reading package lists... 2021-05-16T23:05:19.7013292Z Building dependency tree... 2021-05-16T23:05:19.7029960Z Reading state information... 2021-05-16T23:05:19.9195544Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-16T23:05:19.9198284Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:05:20.1219816Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-16T23:05:20.1658514Z --2021-05-16 23:05:20-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-16T23:05:20.1904330Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-16T23:05:20.1974927Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-16T23:05:20.4420949Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-16T23:05:20.4422976Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-16T23:05:20.4424898Z --2021-05-16 23:05:20-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-16T23:05:20.4973336Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-16T23:05:20.5576806Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-16T23:05:20.7753302Z HTTP request sent, awaiting response... 302 Found 2021-05-16T23:05:20.7765286Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1549/grr7rkdr54m0yum8/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=QJ2GZI3q0WZEnM41ehrx8u%2BM4cvswApZB%2FNpoDRw6eA%3D&st=2021-05-16T23%3A04%3A20Z&se=2021-05-16T23%3A10%3A20Z&sp=r [following] 2021-05-16T23:05:20.7772874Z --2021-05-16 23:05:20-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1549/grr7rkdr54m0yum8/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=QJ2GZI3q0WZEnM41ehrx8u%2BM4cvswApZB%2FNpoDRw6eA%3D&st=2021-05-16T23%3A04%3A20Z&se=2021-05-16T23%3A10%3A20Z&sp=r 2021-05-16T23:05:20.8053566Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-16T23:05:20.8671858Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-16T23:05:21.1068466Z HTTP request sent, awaiting response... 200 OK 2021-05-16T23:05:21.1070858Z Length: 67310420 (64M) [application/octet-stream] 2021-05-16T23:05:21.1073721Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-16T23:05:21.6578345Z 2021-05-16T23:05:23.1990528Z 0K ........ ........ ........ ........ 49% 16.0M 2s 2021-05-16T23:05:24.3842015Z 32768K ........ ........ ........ ........ 99% 26.4M 0s 2021-05-16T23:05:24.3844636Z 65536K 100% 3.04M=3.3s 2021-05-16T23:05:24.3845634Z 2021-05-16T23:05:24.3851111Z 2021-05-16 23:05:24 (19.6 MB/s) - ‘TinyTeX.tar.gz’ saved [67310420/67310420] 2021-05-16T23:05:24.3852437Z 2021-05-16T23:05:27.4975358Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-16T23:05:27.4976848Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-16T23:05:27.7851199Z ##[group]Run tlmgr update --self 2021-05-16T23:05:27.7851687Z tlmgr update --self 2021-05-16T23:05:27.7852390Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-16T23:05:27.7853074Z tlmgr update --all 2021-05-16T23:05:27.7892385Z shell: /usr/bin/bash -e {0} 2021-05-16T23:05:27.7892709Z env: 2021-05-16T23:05:27.7893057Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:05:27.7893441Z TIC_DEPLOY_KEY: 2021-05-16T23:05:27.7894077Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:05:27.7895546Z GITHUB_PAT: *** 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--no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/xk7L8svAs8/w4xvz2AkW0. 2021-05-16T23:05:37.6926647Z OK: optex.fmt/luatex 2021-05-16T23:05:37.6927927Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-16T23:05:37.6929461Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-16T23:05:38.9792842Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-16T23:05:38.9795971Z tlmgr: no updates available 2021-05-16T23:05:39.0843085Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-16T23:05:39.0843616Z with: 2021-05-16T23:05:39.0844143Z pandoc-version: 2.7.3 2021-05-16T23:05:39.0844495Z env: 2021-05-16T23:05:39.0844895Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:05:39.0845312Z TIC_DEPLOY_KEY: 2021-05-16T23:05:39.0846049Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:05:39.0847643Z GITHUB_PAT: *** 2021-05-16T23:05:39.0847995Z COVERALLS_TOKEN: 2021-05-16T23:05:39.0848437Z continue-on-error: true 2021-05-16T23:05:39.0848855Z VDIFFR_RUN_TESTS: 2021-05-16T23:05:39.0849299Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:05:39.0849694Z TZ: UTC 2021-05-16T23:05:39.0850050Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:05:39.0850414Z NOT_CRAN: true 2021-05-16T23:05:39.0850754Z ##[endgroup] 2021-05-16T23:05:39.4633434Z [command]sudo apt-get install -y gdebi-core 2021-05-16T23:05:39.5273656Z Reading package lists... 2021-05-16T23:05:39.6645544Z Building dependency tree... 2021-05-16T23:05:39.6660072Z Reading state information... 2021-05-16T23:05:39.8807128Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-16T23:05:39.8808492Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:05:39.8832218Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-16T23:05:40.0029880Z 2021-05-16T23:05:40.0174294Z 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2021-05-16T23:05:40.4972450Z 2021-05-16T23:05:40.4972930Z Reading state information... 87% 2021-05-16T23:05:40.5004006Z 2021-05-16T23:05:40.5004486Z Reading state information... 89% 2021-05-16T23:05:40.5035541Z 2021-05-16T23:05:40.5036017Z Reading state information... 91% 2021-05-16T23:05:40.5074665Z 2021-05-16T23:05:40.5075157Z Reading state information... 93% 2021-05-16T23:05:40.5107463Z 2021-05-16T23:05:40.5108026Z Reading state information... 95% 2021-05-16T23:05:40.5143697Z 2021-05-16T23:05:40.5144202Z Reading state information... 97% 2021-05-16T23:05:40.5182860Z 2021-05-16T23:05:40.5183385Z Reading state information... 99% 2021-05-16T23:05:40.7753170Z Selecting previously unselected package pandoc. 2021-05-16T23:05:40.8886485Z (Reading database ... 261973 files and directories currently installed.) 2021-05-16T23:05:40.9008943Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-16T23:05:40.9025972Z Unpacking pandoc (2.7.3-1) ... 2021-05-16T23:05:43.0325188Z Setting up pandoc (2.7.3-1) ... 2021-05-16T23:05:43.0358242Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:05:43.7981519Z 2021-05-16T23:05:43.7982347Z 2021-05-16T23:05:43.7982994Z Reading state information... Done 2021-05-16T23:05:43.8312668Z ##[group]Run git config user.name adigherman 2021-05-16T23:05:43.8313369Z git config user.name adigherman 2021-05-16T23:05:43.8315559Z git config user.email adig@jhu.edu 2021-05-16T23:05:43.8358866Z shell: /usr/bin/bash -e {0} 2021-05-16T23:05:43.8359325Z env: 2021-05-16T23:05:43.8359856Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:05:43.8360388Z TIC_DEPLOY_KEY: 2021-05-16T23:05:43.8361388Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:05:43.8363059Z GITHUB_PAT: *** 2021-05-16T23:05:43.8363498Z COVERALLS_TOKEN: 2021-05-16T23:05:43.8364044Z continue-on-error: true 2021-05-16T23:05:43.8364556Z VDIFFR_RUN_TESTS: 2021-05-16T23:05:43.8365068Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:05:43.8365577Z TZ: UTC 2021-05-16T23:05:43.8366002Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:05:43.8366435Z NOT_CRAN: true 2021-05-16T23:05:43.8366856Z ##[endgroup] 2021-05-16T23:05:43.8644954Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-16T23:05:43.8645529Z env: 2021-05-16T23:05:43.8645936Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:05:43.8646367Z TIC_DEPLOY_KEY: 2021-05-16T23:05:43.8647093Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:05:43.8648617Z GITHUB_PAT: *** 2021-05-16T23:05:43.8648990Z COVERALLS_TOKEN: 2021-05-16T23:05:43.8649413Z continue-on-error: true 2021-05-16T23:05:43.8649947Z VDIFFR_RUN_TESTS: 2021-05-16T23:05:43.8650377Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:05:43.8651708Z TZ: UTC 2021-05-16T23:05:43.8652142Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:05:43.8652598Z NOT_CRAN: true 2021-05-16T23:05:43.8653003Z ##[endgroup] 2021-05-16T23:05:44.1757501Z Reading package lists... 2021-05-16T23:05:44.3200713Z Building dependency tree... 2021-05-16T23:05:44.3219099Z Reading state information... 2021-05-16T23:05:44.4613542Z The following additional packages will be installed: 2021-05-16T23:05:44.4616039Z cmake-data libjsoncpp1 librhash0 2021-05-16T23:05:44.4619405Z Suggested packages: 2021-05-16T23:05:44.4620773Z cmake-doc ninja-build 2021-05-16T23:05:44.5084771Z The following NEW packages will be installed: 2021-05-16T23:05:44.5093447Z cmake cmake-data libjsoncpp1 librhash0 2021-05-16T23:05:44.6123321Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:05:44.6124465Z Need to get 5470 kB of archives. 2021-05-16T23:05:44.6125592Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-16T23:05:44.6128632Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-16T23:05:44.6440108Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-16T23:05:44.6455092Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-16T23:05:44.6479242Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-16T23:05:45.1073079Z Fetched 5470 kB in 0s (27.4 MB/s) 2021-05-16T23:05:45.1424359Z Selecting previously unselected package cmake-data. 2021-05-16T23:05:45.1496408Z (Reading database ... 2021-05-16T23:05:45.1497381Z (Reading database ... 5% 2021-05-16T23:05:45.1498089Z (Reading database ... 10% 2021-05-16T23:05:45.1498758Z (Reading database ... 15% 2021-05-16T23:05:45.1499456Z (Reading database ... 20% 2021-05-16T23:05:45.1500112Z (Reading database ... 25% 2021-05-16T23:05:45.1500784Z (Reading database ... 30% 2021-05-16T23:05:45.1501497Z (Reading database ... 35% 2021-05-16T23:05:45.1502148Z (Reading database ... 40% 2021-05-16T23:05:45.1502808Z (Reading database ... 45% 2021-05-16T23:05:45.1503462Z (Reading database ... 50% 2021-05-16T23:05:45.1535560Z (Reading database ... 55% 2021-05-16T23:05:45.1567559Z (Reading database ... 60% 2021-05-16T23:05:45.1603005Z (Reading database ... 65% 2021-05-16T23:05:45.1717709Z (Reading database ... 70% 2021-05-16T23:05:45.1822117Z (Reading database ... 75% 2021-05-16T23:05:45.2072015Z (Reading database ... 80% 2021-05-16T23:05:45.2358919Z (Reading database ... 85% 2021-05-16T23:05:45.2472124Z (Reading database ... 90% 2021-05-16T23:05:45.2541090Z (Reading database ... 95% 2021-05-16T23:05:45.2541612Z (Reading database ... 100% 2021-05-16T23:05:45.2542340Z (Reading database ... 261980 files and directories currently installed.) 2021-05-16T23:05:45.2640311Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-16T23:05:45.2830381Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-16T23:05:45.8446598Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-16T23:05:45.8731751Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-16T23:05:45.8755425Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-16T23:05:45.9067603Z Selecting previously unselected package librhash0:amd64. 2021-05-16T23:05:45.9347609Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-16T23:05:45.9362580Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-16T23:05:45.9704376Z Selecting previously unselected package cmake. 2021-05-16T23:05:45.9980673Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-16T23:05:45.9992035Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-16T23:05:46.4701329Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-16T23:05:46.4808901Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-16T23:05:46.5271734Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-16T23:05:46.5300808Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-16T23:05:46.5337483Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:05:47.7045247Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:05:49.7269585Z Reading package lists... 2021-05-16T23:05:49.8730017Z Building dependency tree... 2021-05-16T23:05:49.8747668Z Reading state information... 2021-05-16T23:05:50.0226758Z Suggested packages: 2021-05-16T23:05:50.0228494Z libssh-doc 2021-05-16T23:05:50.0683890Z The following NEW packages will be installed: 2021-05-16T23:05:50.0687557Z libssh-dev 2021-05-16T23:05:50.0985292Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:05:50.0986170Z Need to get 219 kB of archives. 2021-05-16T23:05:50.0986995Z After this operation, 1127 kB of additional disk space will be used. 2021-05-16T23:05:50.0989032Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-16T23:05:50.4838639Z Fetched 219 kB in 0s (7621 kB/s) 2021-05-16T23:05:50.5156202Z Selecting previously unselected package libssh-dev:amd64. 2021-05-16T23:05:50.5209333Z (Reading database ... 2021-05-16T23:05:50.5210048Z (Reading database ... 5% 2021-05-16T23:05:50.5210915Z (Reading database ... 10% 2021-05-16T23:05:50.5211396Z (Reading database ... 15% 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and directories currently installed.) 2021-05-16T23:05:50.6413881Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-16T23:05:50.6431683Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-16T23:05:50.7194639Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-16T23:05:52.7552246Z Reading package lists... 2021-05-16T23:05:52.9417864Z Building dependency tree... 2021-05-16T23:05:52.9439350Z Reading state information... 2021-05-16T23:05:53.1533054Z The following NEW packages will be installed: 2021-05-16T23:05:53.1539158Z jags 2021-05-16T23:05:53.1739883Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:05:53.1741926Z Need to get 1562 kB of archives. 2021-05-16T23:05:53.1743236Z After this operation, 3615 kB of additional disk space will be used. 2021-05-16T23:05:53.1745293Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-16T23:05:53.5996664Z Fetched 1562 kB in 0s (39.7 MB/s) 2021-05-16T23:05:53.6298025Z Selecting previously unselected package jags. 2021-05-16T23:05:53.6363775Z (Reading database ... 2021-05-16T23:05:53.6364451Z (Reading database ... 5% 2021-05-16T23:05:53.6367174Z (Reading database ... 10% 2021-05-16T23:05:53.6367712Z (Reading database ... 15% 2021-05-16T23:05:53.6368223Z (Reading database ... 20% 2021-05-16T23:05:53.6368717Z (Reading database ... 25% 2021-05-16T23:05:53.6369230Z (Reading database ... 30% 2021-05-16T23:05:53.6369966Z (Reading database ... 35% 2021-05-16T23:05:53.6370551Z (Reading database ... 40% 2021-05-16T23:05:53.6371147Z (Reading database ... 45% 2021-05-16T23:05:53.6371892Z (Reading database ... 50% 2021-05-16T23:05:53.6407453Z (Reading database ... 55% 2021-05-16T23:05:53.6440367Z (Reading database ... 60% 2021-05-16T23:05:53.6474204Z (Reading database ... 65% 2021-05-16T23:05:53.6602478Z (Reading database ... 70% 2021-05-16T23:05:53.6705255Z (Reading database ... 75% 2021-05-16T23:05:53.7070791Z (Reading database ... 80% 2021-05-16T23:05:53.7394287Z (Reading database ... 85% 2021-05-16T23:05:53.7522968Z (Reading database ... 90% 2021-05-16T23:05:53.7597208Z (Reading database ... 95% 2021-05-16T23:05:53.7597893Z (Reading database ... 100% 2021-05-16T23:05:53.7598823Z (Reading database ... 264783 files and directories currently installed.) 2021-05-16T23:05:53.7708840Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-16T23:05:53.7742382Z Unpacking jags (4.3.0-3build1) ... 2021-05-16T23:05:53.9308419Z Setting up jags (4.3.0-3build1) ... 2021-05-16T23:05:53.9526620Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:05:54.7024590Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:05:56.6899661Z Reading package lists... 2021-05-16T23:05:56.8302359Z Building dependency tree... 2021-05-16T23:05:56.8318749Z Reading state information... 2021-05-16T23:05:56.9741565Z The following additional packages will be installed: 2021-05-16T23:05:56.9743955Z libnode64 libuv1-dev 2021-05-16T23:05:57.0150772Z The following NEW packages will be installed: 2021-05-16T23:05:57.0152949Z libnode-dev libnode64 libuv1-dev 2021-05-16T23:05:57.0327697Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:05:57.0328396Z Need to get 6239 kB of archives. 2021-05-16T23:05:57.0329272Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-16T23:05:57.0331044Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-16T23:05:57.0387677Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-16T23:05:57.1448781Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-16T23:05:57.5239007Z Fetched 6239 kB in 0s (47.8 MB/s) 2021-05-16T23:05:57.5550987Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-16T23:05:57.5615361Z (Reading database ... 2021-05-16T23:05:57.5615912Z (Reading database ... 5% 2021-05-16T23:05:57.5616376Z (Reading database ... 10% 2021-05-16T23:05:57.5616831Z (Reading database ... 15% 2021-05-16T23:05:57.5617314Z (Reading database ... 20% 2021-05-16T23:05:57.5617760Z (Reading database ... 25% 2021-05-16T23:05:57.5618219Z (Reading database ... 30% 2021-05-16T23:05:57.5618671Z (Reading database ... 35% 2021-05-16T23:05:57.5619111Z (Reading database ... 40% 2021-05-16T23:05:57.5619564Z (Reading database ... 45% 2021-05-16T23:05:57.5620006Z (Reading database ... 50% 2021-05-16T23:05:57.5648128Z (Reading database ... 55% 2021-05-16T23:05:57.5680676Z (Reading database ... 60% 2021-05-16T23:05:57.5719074Z (Reading database ... 65% 2021-05-16T23:05:57.5830439Z (Reading database ... 70% 2021-05-16T23:05:57.5933289Z (Reading database ... 75% 2021-05-16T23:05:57.6179994Z (Reading database ... 80% 2021-05-16T23:05:57.6462723Z (Reading database ... 85% 2021-05-16T23:05:57.6580304Z (Reading database ... 90% 2021-05-16T23:05:57.6655197Z (Reading database ... 95% 2021-05-16T23:05:57.6656142Z (Reading database ... 100% 2021-05-16T23:05:57.6657472Z (Reading database ... 264923 files and directories currently installed.) 2021-05-16T23:05:57.6754022Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-16T23:05:57.6767716Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-16T23:05:57.7115555Z Selecting previously unselected package libnode64:amd64. 2021-05-16T23:05:57.7372892Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-16T23:05:57.7397000Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T23:05:58.3797395Z Selecting previously unselected package libnode-dev:amd64. 2021-05-16T23:05:58.4053184Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-16T23:05:58.4070780Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T23:05:58.5031575Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-16T23:05:58.5063173Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T23:05:58.5094511Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-16T23:05:58.5130326Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:00.5460703Z Reading package lists... 2021-05-16T23:06:00.6853092Z Building dependency tree... 2021-05-16T23:06:00.6869568Z Reading state information... 2021-05-16T23:06:00.8232370Z The following additional packages will be installed: 2021-05-16T23:06:00.8236324Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-16T23:06:00.8241798Z Suggested packages: 2021-05-16T23:06:00.8243471Z libfftw3-doc 2021-05-16T23:06:00.8652675Z The following NEW packages will be installed: 2021-05-16T23:06:00.8658663Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-16T23:06:00.8850446Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:00.8851549Z Need to get 3986 kB of archives. 2021-05-16T23:06:00.8853659Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-16T23:06:00.8856872Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-16T23:06:00.8917432Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-16T23:06:00.8990284Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-16T23:06:00.9045794Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-16T23:06:00.9051308Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-16T23:06:01.2774806Z Fetched 3986 kB in 0s (79.1 MB/s) 2021-05-16T23:06:01.3064239Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-16T23:06:01.3129929Z (Reading database ... 2021-05-16T23:06:01.3130779Z (Reading database ... 5% 2021-05-16T23:06:01.3131485Z (Reading database ... 10% 2021-05-16T23:06:01.3132206Z (Reading database ... 15% 2021-05-16T23:06:01.3132905Z (Reading database ... 20% 2021-05-16T23:06:01.3133594Z (Reading database ... 25% 2021-05-16T23:06:01.3134316Z (Reading database ... 30% 2021-05-16T23:06:01.3134998Z (Reading database ... 35% 2021-05-16T23:06:01.3135689Z (Reading database ... 40% 2021-05-16T23:06:01.3136384Z (Reading database ... 45% 2021-05-16T23:06:01.3137071Z (Reading database ... 50% 2021-05-16T23:06:01.3156207Z (Reading database ... 55% 2021-05-16T23:06:01.3190183Z (Reading database ... 60% 2021-05-16T23:06:01.3226429Z (Reading database ... 65% 2021-05-16T23:06:01.3334366Z (Reading database ... 70% 2021-05-16T23:06:01.3436641Z (Reading database ... 75% 2021-05-16T23:06:01.3710022Z (Reading database ... 80% 2021-05-16T23:06:01.4015224Z (Reading database ... 85% 2021-05-16T23:06:01.4131179Z (Reading database ... 90% 2021-05-16T23:06:01.4200417Z (Reading database ... 95% 2021-05-16T23:06:01.4204483Z (Reading database ... 100% 2021-05-16T23:06:01.4205668Z (Reading database ... 265059 files and directories currently installed.) 2021-05-16T23:06:01.4301429Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T23:06:01.4329210Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:01.4915720Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-16T23:06:01.5127925Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T23:06:01.5141497Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:01.6075959Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-16T23:06:01.6245763Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T23:06:01.6258976Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:01.7155497Z Selecting previously unselected package libfftw3-bin. 2021-05-16T23:06:01.7326503Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T23:06:01.7339675Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-16T23:06:01.7636382Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-16T23:06:01.7877182Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-16T23:06:01.7891850Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:02.0530741Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:02.0562140Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:02.0596346Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:02.0622136Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-16T23:06:02.0649914Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-16T23:06:02.0683136Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:02.8054914Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:04.7822224Z Reading package lists... 2021-05-16T23:06:04.9171294Z Building dependency tree... 2021-05-16T23:06:04.9189513Z Reading state information... 2021-05-16T23:06:05.0557689Z The following additional packages will be installed: 2021-05-16T23:06:05.0559863Z libdcmtk14 2021-05-16T23:06:05.1029475Z The following NEW packages will be installed: 2021-05-16T23:06:05.1034295Z dcmtk libdcmtk14 2021-05-16T23:06:05.1217912Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:05.1218892Z Need to get 5546 kB of archives. 2021-05-16T23:06:05.1220777Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-16T23:06:05.1222449Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-16T23:06:06.0283356Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-16T23:06:06.0284437Z Fetched 5546 kB in 0s (30.9 MB/s) 2021-05-16T23:06:06.0290125Z Selecting previously unselected package libdcmtk14. 2021-05-16T23:06:06.0291059Z (Reading database ... 2021-05-16T23:06:06.0291734Z (Reading database ... 5% 2021-05-16T23:06:06.0292294Z (Reading database ... 10% 2021-05-16T23:06:06.0292813Z (Reading database ... 15% 2021-05-16T23:06:06.0293309Z (Reading database ... 20% 2021-05-16T23:06:06.0293834Z (Reading database ... 25% 2021-05-16T23:06:06.0294328Z (Reading database ... 30% 2021-05-16T23:06:06.0294828Z (Reading database ... 35% 2021-05-16T23:06:06.0295567Z (Reading database ... 40% 2021-05-16T23:06:06.0296074Z (Reading database ... 45% 2021-05-16T23:06:06.0296566Z (Reading database ... 50% 2021-05-16T23:06:06.0297069Z (Reading database ... 55% 2021-05-16T23:06:06.0297559Z (Reading database ... 60% 2021-05-16T23:06:06.0298069Z (Reading database ... 65% 2021-05-16T23:06:06.0298586Z (Reading database ... 70% 2021-05-16T23:06:06.0300491Z (Reading database ... 75% 2021-05-16T23:06:06.0301468Z (Reading database ... 80% 2021-05-16T23:06:06.0302019Z (Reading database ... 85% 2021-05-16T23:06:06.0302566Z (Reading database ... 90% 2021-05-16T23:06:06.0303100Z (Reading database ... 95% 2021-05-16T23:06:06.0303646Z (Reading database ... 100% 2021-05-16T23:06:06.0304480Z (Reading database ... 265150 files and directories currently installed.) 2021-05-16T23:06:06.0306093Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-16T23:06:06.0307077Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-16T23:06:06.2915797Z Selecting previously unselected package dcmtk. 2021-05-16T23:06:06.3139466Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-16T23:06:06.3201297Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-16T23:06:06.4705751Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-16T23:06:06.4737917Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-16T23:06:06.6715615Z Adding `dcmtk' group to system ... 2021-05-16T23:06:06.7358997Z Adding `dcmtk' user to system ... 2021-05-16T23:06:06.8509423Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-16T23:06:07.0977915Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:08.6244845Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:10.5048678Z Reading package lists... 2021-05-16T23:06:10.6371574Z Building dependency tree... 2021-05-16T23:06:10.6389908Z Reading state information... 2021-05-16T23:06:10.8379674Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-16T23:06:10.8380933Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:10.8967810Z Reading package lists... 2021-05-16T23:06:11.0231013Z Building dependency tree... 2021-05-16T23:06:11.0251474Z Reading state information... 2021-05-16T23:06:11.2423693Z libpng-dev is already the newest version (1.6.37-2). 2021-05-16T23:06:11.2425075Z libpng-dev set to manually installed. 2021-05-16T23:06:11.2429999Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:11.2991940Z Reading package lists... 2021-05-16T23:06:11.4317676Z Building dependency tree... 2021-05-16T23:06:11.4335122Z Reading state information... 2021-05-16T23:06:11.5736528Z The following additional packages will be installed: 2021-05-16T23:06:11.5740468Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-16T23:06:11.5742935Z Suggested packages: 2021-05-16T23:06:11.5745434Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-16T23:06:11.5750885Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-16T23:06:11.5756012Z fonts-arphic-uming fonts-nanum 2021-05-16T23:06:11.6203273Z The following NEW packages will be installed: 2021-05-16T23:06:11.6211200Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-16T23:06:11.6217154Z libpoppler97 poppler-data 2021-05-16T23:06:11.6421539Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:11.6422378Z Need to get 2582 kB of archives. 2021-05-16T23:06:11.6423240Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-16T23:06:11.6425156Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-16T23:06:11.6630424Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-16T23:06:11.6659880Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-16T23:06:11.7221963Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-16T23:06:11.7230675Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-16T23:06:11.7237033Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-16T23:06:12.0939629Z Fetched 2582 kB in 0s (26.7 MB/s) 2021-05-16T23:06:12.1243280Z Selecting previously unselected package poppler-data. 2021-05-16T23:06:12.1312015Z (Reading database ... 2021-05-16T23:06:12.1312870Z (Reading database ... 5% 2021-05-16T23:06:12.1313508Z (Reading database ... 10% 2021-05-16T23:06:12.1314709Z (Reading database ... 15% 2021-05-16T23:06:12.1315303Z (Reading database ... 20% 2021-05-16T23:06:12.1316088Z (Reading database ... 25% 2021-05-16T23:06:12.1316699Z (Reading database ... 30% 2021-05-16T23:06:12.1317295Z (Reading database ... 35% 2021-05-16T23:06:12.1317895Z (Reading database ... 40% 2021-05-16T23:06:12.1318490Z (Reading database ... 45% 2021-05-16T23:06:12.1319087Z (Reading database ... 50% 2021-05-16T23:06:12.1347944Z (Reading database ... 55% 2021-05-16T23:06:12.1382690Z (Reading database ... 60% 2021-05-16T23:06:12.1419051Z (Reading database ... 65% 2021-05-16T23:06:12.1541855Z (Reading database ... 70% 2021-05-16T23:06:12.1645825Z (Reading database ... 75% 2021-05-16T23:06:12.1889728Z (Reading database ... 80% 2021-05-16T23:06:12.2173238Z (Reading database ... 85% 2021-05-16T23:06:12.2283225Z (Reading database ... 90% 2021-05-16T23:06:12.2350694Z (Reading database ... 95% 2021-05-16T23:06:12.2351561Z (Reading database ... 100% 2021-05-16T23:06:12.2352797Z (Reading database ... 265385 files and directories currently installed.) 2021-05-16T23:06:12.2449669Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-16T23:06:12.2463862Z Unpacking poppler-data (0.4.9-2) ... 2021-05-16T23:06:12.4956397Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-16T23:06:12.5172670Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-16T23:06:12.5196619Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-16T23:06:12.5635697Z Selecting previously unselected package libpoppler97:amd64. 2021-05-16T23:06:12.5819764Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T23:06:12.5830816Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.7076251Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-16T23:06:12.7279461Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T23:06:12.7300192Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.7595864Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-16T23:06:12.7827811Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T23:06:12.7840980Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.8076202Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-16T23:06:12.8305065Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-16T23:06:12.8314259Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.8849904Z Setting up poppler-data (0.4.9-2) ... 2021-05-16T23:06:12.8952098Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-16T23:06:12.8980023Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.9014743Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.9038708Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.9063149Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-16T23:06:12.9094747Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-16T23:06:13.0341196Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:14.9532670Z Reading package lists... 2021-05-16T23:06:15.0888505Z Building dependency tree... 2021-05-16T23:06:15.0908222Z Reading state information... 2021-05-16T23:06:15.2271175Z The following additional packages will be installed: 2021-05-16T23:06:15.2276208Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-16T23:06:15.2281013Z Suggested packages: 2021-05-16T23:06:15.2282346Z libhdf5-doc 2021-05-16T23:06:15.2674840Z The following NEW packages will be installed: 2021-05-16T23:06:15.2679936Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-16T23:06:15.2683887Z libsz2 2021-05-16T23:06:15.2878754Z 0 upgraded, 7 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:15.2879336Z Need to get 4074 kB of archives. 2021-05-16T23:06:15.2879911Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-16T23:06:15.2881826Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-16T23:06:15.2903125Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-16T23:06:15.2908244Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-16T23:06:15.2912532Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-16T23:06:15.3100558Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-16T23:06:15.3122505Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-16T23:06:15.3132297Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-16T23:06:15.7405292Z Fetched 4074 kB in 0s (51.1 MB/s) 2021-05-16T23:06:15.7702246Z Selecting previously unselected package hdf5-helpers. 2021-05-16T23:06:15.7770080Z (Reading database ... 2021-05-16T23:06:15.7770833Z (Reading database ... 5% 2021-05-16T23:06:15.7771461Z (Reading database ... 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2021-05-16T23:06:15.8784201Z (Reading database ... 265945 files and directories currently installed.) 2021-05-16T23:06:15.8877391Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T23:06:15.8897225Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:15.9174705Z Selecting previously unselected package libaec0:amd64. 2021-05-16T23:06:15.9420590Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-16T23:06:15.9448122Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-16T23:06:15.9715111Z Selecting previously unselected package libsz2:amd64. 2021-05-16T23:06:15.9918880Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-16T23:06:15.9932111Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-16T23:06:16.0235499Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-16T23:06:16.0458895Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T23:06:16.0470424Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.1847589Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-16T23:06:16.2100875Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T23:06:16.2112417Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.2515928Z Selecting previously unselected package libaec-dev:amd64. 2021-05-16T23:06:16.2676520Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-16T23:06:16.2688078Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-16T23:06:16.2935186Z Selecting previously unselected package libhdf5-dev. 2021-05-16T23:06:16.3178607Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-16T23:06:16.3189300Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.6170380Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.6203753Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-16T23:06:16.6234429Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-16T23:06:16.6270292Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-16T23:06:16.6298225Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.6328089Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.6357464Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-16T23:06:16.6430445Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-16T23:06:16.6458077Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:17.3833431Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:19.3456302Z Reading package lists... 2021-05-16T23:06:19.4875466Z Building dependency tree... 2021-05-16T23:06:19.4892784Z Reading state information... 2021-05-16T23:06:19.6303674Z The following additional packages will be installed: 2021-05-16T23:06:19.6307057Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-16T23:06:19.6746545Z The following NEW packages will be installed: 2021-05-16T23:06:19.6749272Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-16T23:06:19.6750315Z mesa-common-dev 2021-05-16T23:06:19.6956699Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:19.6957525Z Need to get 1761 kB of archives. 2021-05-16T23:06:19.6958265Z After this operation, 5442 kB of additional disk space will be used. 2021-05-16T23:06:19.6959871Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-16T23:06:19.6989043Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-16T23:06:19.6993745Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-16T23:06:19.7016667Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-16T23:06:19.7058864Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-16T23:06:19.7102396Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-16T23:06:20.0935021Z Fetched 1761 kB in 0s (33.3 MB/s) 2021-05-16T23:06:20.1218214Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-16T23:06:20.1277719Z (Reading database ... 2021-05-16T23:06:20.1278339Z (Reading database ... 5% 2021-05-16T23:06:20.1278877Z (Reading database ... 10% 2021-05-16T23:06:20.1279398Z (Reading database ... 15% 2021-05-16T23:06:20.1279921Z (Reading database ... 20% 2021-05-16T23:06:20.1280482Z (Reading database ... 25% 2021-05-16T23:06:20.1281017Z (Reading database ... 30% 2021-05-16T23:06:20.1281540Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-16T23:06:20.2738307Z Selecting previously unselected package libglx-dev:amd64. 2021-05-16T23:06:20.2978631Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-16T23:06:20.2989808Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T23:06:20.4076277Z Selecting previously unselected package libgl-dev:amd64. 2021-05-16T23:06:20.4249069Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-16T23:06:20.4259638Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T23:06:20.4675615Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-16T23:06:20.4873480Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-16T23:06:20.4896019Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-16T23:06:20.5295444Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-16T23:06:20.5511082Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-16T23:06:20.5520648Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-16T23:06:20.5955995Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-16T23:06:20.6213834Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-16T23:06:20.6226495Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T23:06:20.7867208Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-16T23:06:20.7898545Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T23:06:20.7927886Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-16T23:06:20.7957826Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T23:06:20.7990438Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-16T23:06:20.8018249Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T23:06:20.8054500Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:22.1002534Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:24.0296020Z Reading package lists... 2021-05-16T23:06:24.1852303Z Building dependency tree... 2021-05-16T23:06:24.1870455Z Reading state information... 2021-05-16T23:06:24.3402934Z The following additional packages will be installed: 2021-05-16T23:06:24.3405911Z libprotobuf-lite17 libprotoc17 2021-05-16T23:06:24.3857092Z The following NEW packages will be installed: 2021-05-16T23:06:24.3859136Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-16T23:06:24.3860272Z protobuf-compiler 2021-05-16T23:06:24.4052166Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:24.4052830Z Need to get 2754 kB of archives. 2021-05-16T23:06:24.4053503Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-16T23:06:24.4055109Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-16T23:06:24.4109276Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-16T23:06:24.4337847Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-16T23:06:24.4768213Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-16T23:06:24.4988699Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-16T23:06:24.9069248Z Fetched 2754 kB in 0s (25.3 MB/s) 2021-05-16T23:06:24.9412122Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-16T23:06:24.9486794Z (Reading database ... 2021-05-16T23:06:24.9488063Z (Reading database ... 5% 2021-05-16T23:06:24.9489193Z (Reading database ... 10% 2021-05-16T23:06:24.9490291Z (Reading database ... 15% 2021-05-16T23:06:24.9491402Z (Reading 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2021-05-16T23:06:25.0558478Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T23:06:25.0578816Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.0952505Z Selecting previously unselected package libprotoc17:amd64. 2021-05-16T23:06:25.1226957Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T23:06:25.1236523Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.2155562Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-16T23:06:25.2344397Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T23:06:25.2355399Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.3835870Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-16T23:06:25.4090799Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T23:06:25.4101808Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.5236016Z Selecting previously unselected package protobuf-compiler. 2021-05-16T23:06:25.5521428Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-16T23:06:25.5531957Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.6118119Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.6150759Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.6179798Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.6211088Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.6241151Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-16T23:06:25.6268300Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:26.3436524Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:28.4387664Z Reading package lists... 2021-05-16T23:06:28.5969920Z Building dependency tree... 2021-05-16T23:06:28.5990858Z Reading state information... 2021-05-16T23:06:28.7470231Z The following additional packages will be installed: 2021-05-16T23:06:28.7474340Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-16T23:06:28.7478542Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-16T23:06:28.7480703Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-16T23:06:28.7482555Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-16T23:06:28.7484433Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-16T23:06:28.7487023Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-16T23:06:28.7489782Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-16T23:06:28.7492000Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-16T23:06:28.7493555Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-16T23:06:28.7495100Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-16T23:06:28.7497038Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-16T23:06:28.7498543Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-16T23:06:28.7499998Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-16T23:06:28.7501411Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-16T23:06:28.7502310Z Suggested packages: 2021-05-16T23:06:28.7503587Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-16T23:06:28.7505724Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-16T23:06:28.7507728Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-16T23:06:28.7509288Z nvidia-legacy-304xx-vdpau-driver 2021-05-16T23:06:28.8223192Z The following NEW packages will be installed: 2021-05-16T23:06:28.8226789Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-16T23:06:28.8229771Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-16T23:06:28.8232293Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-16T23:06:28.8239871Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-16T23:06:28.8242447Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-16T23:06:28.8244983Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-16T23:06:28.8247555Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-16T23:06:28.8250108Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-16T23:06:28.8252528Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-16T23:06:28.8254923Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-16T23:06:28.8257468Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-16T23:06:28.8259798Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-16T23:06:28.8262054Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-16T23:06:28.8264308Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-16T23:06:28.8447465Z 0 upgraded, 76 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:28.8448457Z Need to get 47.1 MB of archives. 2021-05-16T23:06:28.8449270Z After this operation, 195 MB of additional disk space will be used. 2021-05-16T23:06:28.8451864Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-16T23:06:28.8593764Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-16T23:06:28.8602520Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-16T23:06:28.8607758Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-16T23:06:28.8613994Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-16T23:06:28.8618635Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-16T23:06:28.8624414Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-16T23:06:28.8650033Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-16T23:06:28.9283024Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-16T23:06:28.9286765Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-16T23:06:28.9305061Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-16T23:06:28.9324367Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-16T23:06:28.9359318Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-16T23:06:28.9364713Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-16T23:06:28.9369726Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-16T23:06:28.9375113Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-16T23:06:28.9383854Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-16T23:06:28.9385613Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-16T23:06:28.9387327Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-16T23:06:28.9393153Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-16T23:06:28.9408579Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-16T23:06:28.9453202Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-16T23:06:28.9542830Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-16T23:06:28.9563513Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-16T23:06:28.9568750Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-16T23:06:28.9599857Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-16T23:06:29.0122429Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-16T23:06:29.0129747Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-16T23:06:29.0137622Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-16T23:06:29.0145911Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-16T23:06:29.0161145Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-16T23:06:29.0202327Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-16T23:06:29.0204676Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-16T23:06:29.0206187Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-16T23:06:29.0246087Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-16T23:06:29.0270204Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-16T23:06:29.0373935Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-16T23:06:29.0380212Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-16T23:06:29.1455389Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-16T23:06:29.1462184Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-16T23:06:29.1470119Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-16T23:06:29.1472196Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-16T23:06:29.1478363Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-16T23:06:29.1485792Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-16T23:06:29.1493066Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-16T23:06:29.1575733Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-16T23:06:29.1586356Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-16T23:06:29.1606673Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-16T23:06:29.1612287Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-16T23:06:29.1734027Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-16T23:06:29.1755962Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-16T23:06:29.1763692Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-16T23:06:29.1769785Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-16T23:06:29.1802348Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-16T23:06:29.1804739Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-16T23:06:29.1806570Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-16T23:06:29.1815194Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-16T23:06:29.1832778Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-16T23:06:29.1839954Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-16T23:06:29.1883542Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-16T23:06:29.1888178Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-16T23:06:29.1900529Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-16T23:06:29.1917785Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-16T23:06:29.1951407Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-16T23:06:29.1989004Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-16T23:06:29.2000743Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-16T23:06:29.2007490Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-16T23:06:29.2163958Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-16T23:06:29.2169292Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-16T23:06:29.2310908Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-16T23:06:29.2315952Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-16T23:06:29.2323502Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-16T23:06:29.2594846Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-16T23:06:29.2897287Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-16T23:06:29.2977071Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-16T23:06:29.3075654Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-16T23:06:29.8943361Z Fetched 47.1 MB in 0s (101 MB/s) 2021-05-16T23:06:29.9281998Z Selecting previously unselected package libaom0:amd64. 2021-05-16T23:06:29.9354853Z (Reading database ... 2021-05-16T23:06:29.9355707Z (Reading database ... 5% 2021-05-16T23:06:29.9356421Z (Reading database ... 10% 2021-05-16T23:06:29.9357123Z (Reading database ... 15% 2021-05-16T23:06:29.9357836Z (Reading database ... 20% 2021-05-16T23:06:29.9358518Z (Reading database ... 25% 2021-05-16T23:06:29.9359201Z (Reading database ... 30% 2021-05-16T23:06:29.9359873Z (Reading database ... 35% 2021-05-16T23:06:29.9360560Z (Reading database ... 40% 2021-05-16T23:06:29.9361245Z (Reading database ... 45% 2021-05-16T23:06:29.9361914Z (Reading database ... 50% 2021-05-16T23:06:29.9394358Z (Reading database ... 55% 2021-05-16T23:06:29.9427341Z (Reading database ... 60% 2021-05-16T23:06:29.9466346Z (Reading database ... 65% 2021-05-16T23:06:29.9580831Z (Reading database ... 70% 2021-05-16T23:06:29.9688144Z (Reading database ... 75% 2021-05-16T23:06:29.9928687Z (Reading database ... 80% 2021-05-16T23:06:30.0195331Z (Reading database ... 85% 2021-05-16T23:06:30.0330488Z (Reading database ... 90% 2021-05-16T23:06:30.0400381Z (Reading database ... 95% 2021-05-16T23:06:30.0401144Z (Reading database ... 100% 2021-05-16T23:06:30.0402269Z (Reading database ... 266807 files and directories currently installed.) 2021-05-16T23:06:30.0498583Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-16T23:06:30.0519732Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-16T23:06:30.1954901Z Selecting previously unselected package libva2:amd64. 2021-05-16T23:06:30.2203127Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-16T23:06:30.2213815Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-16T23:06:30.2492948Z Selecting previously unselected package libva-drm2:amd64. 2021-05-16T23:06:30.2755797Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-16T23:06:30.2767302Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-16T23:06:30.3004416Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-16T23:06:30.3279291Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-16T23:06:30.3289190Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-16T23:06:30.3551035Z Selecting previously unselected package libvdpau1:amd64. 2021-05-16T23:06:30.3839051Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-16T23:06:30.3854398Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-16T23:06:30.4195852Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-16T23:06:30.4413189Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-16T23:06:30.4424744Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-16T23:06:30.4691584Z Selecting previously unselected package libavutil56:amd64. 2021-05-16T23:06:30.4948906Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-16T23:06:30.4961054Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:30.5397811Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-16T23:06:30.5649521Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-16T23:06:30.5663332Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-16T23:06:31.2915193Z Selecting previously unselected package libgsm1:amd64. 2021-05-16T23:06:31.3111173Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-16T23:06:31.3123690Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-16T23:06:31.3435608Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-16T23:06:31.3688035Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-16T23:06:31.3705786Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-16T23:06:31.4115002Z Selecting previously unselected package libopus0:amd64. 2021-05-16T23:06:31.4341119Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-16T23:06:31.4352601Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-16T23:06:31.4768490Z Selecting previously unselected package libshine3:amd64. 2021-05-16T23:06:31.5032844Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-16T23:06:31.5043058Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-16T23:06:31.5341974Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-16T23:06:31.5581603Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-16T23:06:31.5593016Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-16T23:06:31.5842608Z Selecting previously unselected package libspeex1:amd64. 2021-05-16T23:06:31.6126241Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-16T23:06:31.6136054Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-16T23:06:31.6475206Z Selecting previously unselected package libsoxr0:amd64. 2021-05-16T23:06:31.6683720Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-16T23:06:31.6695616Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-16T23:06:31.7034297Z Selecting previously unselected package libswresample3:amd64. 2021-05-16T23:06:31.7305251Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-16T23:06:31.7317010Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:31.7675820Z Selecting previously unselected package libtheora0:amd64. 2021-05-16T23:06:31.7902349Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-16T23:06:31.7918114Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-16T23:06:31.8354132Z Selecting previously unselected package libtwolame0:amd64. 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2021-05-16T23:06:38.8027996Z Setting up libshine3:amd64 (3.1.1-2) ... 2021-05-16T23:06:38.8060073Z Setting up libcaca0:amd64 (0.99.beta19-2.1ubuntu1.20.04.1) ... 2021-05-16T23:06:38.8110129Z Setting up libtwolame0:amd64 (0.4.0-2) ... 2021-05-16T23:06:38.8159498Z Setting up libgsm1:amd64 (1.0.18-2) ... 2021-05-16T23:06:38.8190853Z Setting up libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... 2021-05-16T23:06:38.8216445Z Setting up libx265-179:amd64 (3.2.1-1build1) ... 2021-05-16T23:06:38.8248001Z Setting up libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-16T23:06:38.8276980Z Setting up libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-16T23:06:38.8304051Z Setting up libmysofa1:amd64 (1.0~dfsg0-1) ... 2021-05-16T23:06:38.8336688Z Setting up libdc1394-22:amd64 (2.2.5-2.1) ... 2021-05-16T23:06:38.8367358Z Setting up libcdio18:amd64 (2.0.0-2) ... 2021-05-16T23:06:38.8398636Z Setting up libxvidcore4:amd64 (2:1.3.7-1) ... 2021-05-16T23:06:38.8427667Z Setting up libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-16T23:06:38.8458012Z Setting up libflac8:amd64 (1.3.3-1build1) ... 2021-05-16T23:06:38.8490318Z Setting up libass9:amd64 (1:0.14.0-2) ... 2021-05-16T23:06:38.8533662Z Setting up libva2:amd64 (2.7.0-2) ... 2021-05-16T23:06:38.8572114Z Setting up libigdgmm11:amd64 (20.1.1+ds1-1) ... 2021-05-16T23:06:38.8601278Z Setting up libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-16T23:06:38.8640627Z Setting up libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-16T23:06:38.8685363Z Setting up intel-media-va-driver:amd64 (20.1.1+dfsg1-1) ... 2021-05-16T23:06:38.8780611Z Setting up libaacs0:amd64 (0.9.0-2) ... 2021-05-16T23:06:38.8801477Z Setting up libsndio7.0:amd64 (1.5.0-3) ... 2021-05-16T23:06:38.8834431Z Setting up libbdplus0:amd64 (0.1.2-3) ... 2021-05-16T23:06:38.8864588Z Setting up libvidstab1.1:amd64 (1.1.0-2) ... 2021-05-16T23:06:38.8903440Z Setting up libflite1:amd64 (2.1-release-3) ... 2021-05-16T23:06:38.8935365Z Setting up libva-drm2:amd64 (2.7.0-2) ... 2021-05-16T23:06:38.8967965Z Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-16T23:06:38.9003712Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-16T23:06:38.9038682Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-16T23:06:38.9081729Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-16T23:06:38.9113582Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-16T23:06:38.9161128Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-16T23:06:38.9222231Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-16T23:06:38.9322243Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T23:06:38.9353997Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-16T23:06:38.9399283Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-16T23:06:38.9434884Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-16T23:06:38.9475750Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-16T23:06:38.9518478Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-16T23:06:38.9555941Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-16T23:06:38.9584525Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-16T23:06:38.9611968Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-16T23:06:38.9646779Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-16T23:06:38.9693100Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-16T23:06:38.9724710Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-16T23:06:38.9757075Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T23:06:38.9785310Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-16T23:06:38.9817347Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-16T23:06:38.9847737Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-16T23:06:38.9920264Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-16T23:06:38.9949756Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:38.9986495Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-16T23:06:39.0019081Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0050152Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-16T23:06:39.0082666Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-16T23:06:39.0114834Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-16T23:06:39.0141699Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-16T23:06:39.0189008Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-16T23:06:39.0234827Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0268095Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-16T23:06:39.0306733Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-16T23:06:39.0337764Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-16T23:06:39.0467978Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0497667Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0526209Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0567650Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-16T23:06:39.0609862Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-16T23:06:39.0637086Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0671301Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0717380Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0745505Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-16T23:06:39.0845684Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:40.1920380Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:42.3541814Z Reading package lists... 2021-05-16T23:06:42.5219203Z Building dependency tree... 2021-05-16T23:06:42.5242064Z Reading state information... 2021-05-16T23:06:42.6820295Z The following additional packages will be installed: 2021-05-16T23:06:42.6824415Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-16T23:06:42.7317850Z The following NEW packages will be installed: 2021-05-16T23:06:42.7319486Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-16T23:06:42.7325583Z libmagick++-dev 2021-05-16T23:06:42.7509254Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:42.7510053Z Need to get 309 kB of archives. 2021-05-16T23:06:42.7511797Z After this operation, 2202 kB of additional disk space will be used. 2021-05-16T23:06:42.7514207Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-16T23:06:42.7535912Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-16T23:06:42.7574416Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-16T23:06:42.7618592Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-16T23:06:43.1914280Z Fetched 309 kB in 0s (12.7 MB/s) 2021-05-16T23:06:43.2275124Z Selecting previously unselected package libmagick++-6-headers. 2021-05-16T23:06:43.2392997Z (Reading database ... 2021-05-16T23:06:43.2394242Z (Reading database ... 5% 2021-05-16T23:06:43.2395007Z (Reading database ... 10% 2021-05-16T23:06:43.2395704Z (Reading database ... 15% 2021-05-16T23:06:43.2396363Z (Reading database ... 20% 2021-05-16T23:06:43.2397036Z (Reading database ... 25% 2021-05-16T23:06:43.2397711Z (Reading database ... 30% 2021-05-16T23:06:43.2398364Z (Reading database ... 35% 2021-05-16T23:06:43.2399027Z (Reading database ... 40% 2021-05-16T23:06:43.2399709Z (Reading database ... 45% 2021-05-16T23:06:43.2400377Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-16T23:06:43.4676189Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.5067679Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-16T23:06:43.5362554Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-16T23:06:43.5372718Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.6317014Z Selecting previously unselected package libmagick++-dev. 2021-05-16T23:06:43.6578269Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-16T23:06:43.6663052Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.7244725Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.7364427Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.7390221Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.7415038Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-16T23:06:43.7500910Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:45.9042006Z Reading package lists... 2021-05-16T23:06:46.0691103Z Building dependency tree... 2021-05-16T23:06:46.0724417Z Reading state information... 2021-05-16T23:06:46.2518548Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-16T23:06:46.2520765Z The following additional packages will be installed: 2021-05-16T23:06:46.2525290Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-16T23:06:46.2527365Z libijs-0.35 libjbig2dec0 2021-05-16T23:06:46.2528407Z Suggested packages: 2021-05-16T23:06:46.2530405Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-16T23:06:46.2532124Z ghostscript-x 2021-05-16T23:06:46.3038777Z The following NEW packages will be installed: 2021-05-16T23:06:46.3048017Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-16T23:06:46.3061782Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-16T23:06:46.3279374Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:46.3280161Z Need to get 11.2 MB of archives. 2021-05-16T23:06:46.3280969Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-16T23:06:46.3282885Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-16T23:06:46.3691700Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-16T23:06:46.3715617Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-16T23:06:46.4970471Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-16T23:06:46.5094670Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-16T23:06:46.5101817Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-16T23:06:46.5112420Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-16T23:06:46.5689798Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-16T23:06:46.9659015Z Fetched 11.2 MB in 0s (43.4 MB/s) 2021-05-16T23:06:46.9969754Z Selecting previously unselected package fonts-droid-fallback. 2021-05-16T23:06:47.0041024Z (Reading database ... 2021-05-16T23:06:47.0041564Z (Reading database ... 5% 2021-05-16T23:06:47.0042019Z (Reading 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... 100% 2021-05-16T23:06:47.1098835Z (Reading database ... 267393 files and directories currently installed.) 2021-05-16T23:06:47.1194423Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-16T23:06:47.1404300Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-16T23:06:47.3517064Z Selecting previously unselected package fonts-noto-mono. 2021-05-16T23:06:47.3718181Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-16T23:06:47.3733441Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-16T23:06:47.4075527Z Selecting previously unselected package fonts-urw-base35. 2021-05-16T23:06:47.4305580Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-16T23:06:47.4891706Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-16T23:06:47.8915927Z Selecting previously unselected package libgs9-common. 2021-05-16T23:06:47.9127976Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-16T23:06:47.9141263Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T23:06:48.0191457Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-16T23:06:48.0482226Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-16T23:06:48.0503736Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-16T23:06:48.0795553Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-16T23:06:48.1026531Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-16T23:06:48.1040273Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-16T23:06:48.1395101Z Selecting previously unselected package libgs9:amd64. 2021-05-16T23:06:48.1672802Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-16T23:06:48.1684154Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T23:06:49.0378692Z Selecting previously unselected package ghostscript. 2021-05-16T23:06:49.0381501Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-16T23:06:49.0386930Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T23:06:49.0388707Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-16T23:06:49.0389786Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-16T23:06:49.0390500Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-16T23:06:49.0391272Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-16T23:06:49.0392090Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-16T23:06:49.0392922Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T23:06:49.0393733Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T23:06:49.0394848Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-16T23:06:49.0395702Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-16T23:06:49.0396518Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:49.0399417Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:06:52.0934630Z Reading package lists... 2021-05-16T23:06:52.2648560Z Building dependency tree... 2021-05-16T23:06:52.2669256Z Reading state information... 2021-05-16T23:06:52.4252593Z The following additional packages will be installed: 2021-05-16T23:06:52.4255958Z libudunits2-0 libudunits2-data 2021-05-16T23:06:52.4792213Z The following NEW packages will be installed: 2021-05-16T23:06:52.4797539Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-16T23:06:52.5071227Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:52.5071950Z Need to get 429 kB of archives. 2021-05-16T23:06:52.5072627Z After this operation, 1026 kB of additional disk space will be used. 2021-05-16T23:06:52.5074931Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-16T23:06:52.5086352Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-16T23:06:52.5095159Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-16T23:06:52.9562803Z Fetched 429 kB in 0s (15.0 MB/s) 2021-05-16T23:06:52.9901557Z Selecting previously unselected package libudunits2-data. 2021-05-16T23:06:53.0002121Z (Reading database ... 2021-05-16T23:06:53.0002873Z (Reading database ... 5% 2021-05-16T23:06:53.0005148Z (Reading database ... 10% 2021-05-16T23:06:53.0005708Z (Reading database ... 15% 2021-05-16T23:06:53.0006259Z (Reading database ... 20% 2021-05-16T23:06:53.0006789Z (Reading database ... 25% 2021-05-16T23:06:53.0007334Z (Reading database ... 30% 2021-05-16T23:06:53.0008125Z (Reading database ... 35% 2021-05-16T23:06:53.0008769Z (Reading database ... 40% 2021-05-16T23:06:53.0009614Z (Reading database ... 45% 2021-05-16T23:06:53.0010255Z (Reading database ... 50% 2021-05-16T23:06:53.0043713Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-16T23:06:53.2396370Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-16T23:06:53.2621675Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-16T23:06:53.2633760Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-16T23:06:53.3446487Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-16T23:06:53.3478866Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-16T23:06:53.3516375Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-16T23:06:53.3549311Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-16T23:06:53.4737677Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:06:55.6303785Z Reading package lists... 2021-05-16T23:06:55.7972894Z Building dependency tree... 2021-05-16T23:06:55.7992151Z Reading state information... 2021-05-16T23:06:55.9889171Z The following NEW packages will be installed: 2021-05-16T23:06:55.9891738Z libjq-dev 2021-05-16T23:06:56.0087561Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:56.0089645Z Need to get 11.2 kB of archives. 2021-05-16T23:06:56.0090547Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-16T23:06:56.3904633Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-16T23:06:56.3905952Z Fetched 11.2 kB in 0s (714 kB/s) 2021-05-16T23:06:56.4197989Z Selecting previously unselected package libjq-dev:amd64. 2021-05-16T23:06:56.4268159Z (Reading database ... 2021-05-16T23:06:56.4269087Z (Reading database ... 5% 2021-05-16T23:06:56.4270010Z (Reading database ... 10% 2021-05-16T23:06:56.4270816Z (Reading database ... 15% 2021-05-16T23:06:56.4285988Z (Reading database ... 20% 2021-05-16T23:06:56.4286620Z (Reading database ... 25% 2021-05-16T23:06:56.4288065Z (Reading database ... 30% 2021-05-16T23:06:56.4288661Z (Reading database ... 35% 2021-05-16T23:06:56.4289242Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-16T23:06:58.4875846Z Reading package lists... 2021-05-16T23:06:58.6381887Z Building dependency tree... 2021-05-16T23:06:58.6403923Z Reading state information... 2021-05-16T23:06:58.8501008Z The following NEW packages will be installed: 2021-05-16T23:06:58.8506190Z libmng2 2021-05-16T23:06:58.8793599Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:06:58.8796194Z Need to get 168 kB of archives. 2021-05-16T23:06:58.8799246Z After this operation, 571 kB of additional disk space will be used. 2021-05-16T23:06:58.8803245Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-16T23:06:59.3170805Z Fetched 168 kB in 0s (6451 kB/s) 2021-05-16T23:06:59.3473408Z Selecting previously unselected package libmng2:amd64. 2021-05-16T23:06:59.3548611Z (Reading database ... 2021-05-16T23:06:59.3549191Z (Reading database ... 5% 2021-05-16T23:06:59.3549714Z (Reading database ... 10% 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2021-05-16T23:06:59.4662420Z (Reading database ... 267992 files and directories currently installed.) 2021-05-16T23:06:59.4768409Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-16T23:06:59.4790520Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-16T23:06:59.5552500Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-16T23:06:59.5595321Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:07:01.7357298Z Reading package lists... 2021-05-16T23:07:01.8917486Z Building dependency tree... 2021-05-16T23:07:01.8937895Z Reading state information... 2021-05-16T23:07:02.0971438Z E: Unable to locate package libmng1 2021-05-16T23:07:02.1648947Z Reading package lists... 2021-05-16T23:07:02.3216316Z Building dependency tree... 2021-05-16T23:07:02.3233738Z Reading state information... 2021-05-16T23:07:02.4519122Z E: Unable to locate package libapparmor-devel 2021-05-16T23:07:02.5200841Z Reading package lists... 2021-05-16T23:07:02.6831193Z Building dependency tree... 2021-05-16T23:07:02.6851255Z Reading state information... 2021-05-16T23:07:02.8420200Z The following additional packages will be installed: 2021-05-16T23:07:02.8422195Z libij-java 2021-05-16T23:07:02.8891546Z The following NEW packages will be installed: 2021-05-16T23:07:02.8899437Z imagej libij-java 2021-05-16T23:07:02.9089776Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:02.9090597Z Need to get 2328 kB of archives. 2021-05-16T23:07:02.9091433Z After this operation, 2498 kB of additional disk space will be used. 2021-05-16T23:07:02.9093932Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-16T23:07:02.9572839Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-16T23:07:03.4012981Z Fetched 2328 kB in 0s (37.0 MB/s) 2021-05-16T23:07:03.4344948Z Selecting previously unselected package libij-java. 2021-05-16T23:07:03.4424082Z (Reading 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lists... 2021-05-16T23:07:08.0601987Z Building dependency tree... 2021-05-16T23:07:08.0616584Z Reading state information... 2021-05-16T23:07:08.1959155Z Suggested packages: 2021-05-16T23:07:08.1961912Z bowtie2-examples 2021-05-16T23:07:08.2394825Z The following NEW packages will be installed: 2021-05-16T23:07:08.2401250Z bowtie2 2021-05-16T23:07:08.2790348Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:08.2791114Z Need to get 1324 kB of archives. 2021-05-16T23:07:08.2791924Z After this operation, 5630 kB of additional disk space will be used. 2021-05-16T23:07:08.2793975Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-16T23:07:08.6755563Z Fetched 1324 kB in 0s (24.8 MB/s) 2021-05-16T23:07:08.7075616Z Selecting previously unselected package bowtie2. 2021-05-16T23:07:08.7132675Z (Reading database ... 2021-05-16T23:07:08.7133360Z (Reading database ... 5% 2021-05-16T23:07:08.7133900Z 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package. 2021-05-16T23:07:12.1966067Z This may mean that the package is missing, has been obsoleted, or 2021-05-16T23:07:12.1967876Z is only available from another source 2021-05-16T23:07:12.1968943Z 2021-05-16T23:07:12.2863727Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-16T23:07:12.3465235Z Reading package lists... 2021-05-16T23:07:12.4883597Z Building dependency tree... 2021-05-16T23:07:12.4900541Z Reading state information... 2021-05-16T23:07:12.5094251Z Package libav-tools is not available, but is referred to by another package. 2021-05-16T23:07:13.0444618Z E: Package 'libav-tools' has no installation candidate 2021-05-16T23:07:13.0445351Z This may mean that the package is missing, has been obsoleted, or 2021-05-16T23:07:13.0451803Z is only available from another source 2021-05-16T23:07:13.0452439Z However the following packages replace it: 2021-05-16T23:07:13.0452929Z ffmpeg 2021-05-16T23:07:13.0453200Z 2021-05-16T23:07:13.0453560Z Reading package lists... 2021-05-16T23:07:13.0454076Z Building dependency tree... 2021-05-16T23:07:13.0454607Z Reading state information... 2021-05-16T23:07:13.0455231Z The following additional packages will be installed: 2021-05-16T23:07:13.0457433Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-16T23:07:13.0459176Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-16T23:07:13.0460321Z libssh2-1-dev 2021-05-16T23:07:13.0460973Z Suggested packages: 2021-05-16T23:07:13.0461887Z libgcrypt20-doc libmbedtls-doc 2021-05-16T23:07:13.0462786Z The following NEW packages will be installed: 2021-05-16T23:07:13.0464212Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-16T23:07:13.0465907Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-16T23:07:13.0467043Z libssh2-1-dev 2021-05-16T23:07:13.0468002Z 0 upgraded, 11 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:13.0468678Z Need to get 2667 kB of archives. 2021-05-16T23:07:13.0469462Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-16T23:07:13.0470837Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-16T23:07:13.0472507Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-16T23:07:13.0476618Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-16T23:07:13.0478315Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-16T23:07:13.0479906Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-16T23:07:13.0481469Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-16T23:07:13.0483017Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-16T23:07:13.0484826Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-16T23:07:13.0486822Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-16T23:07:13.0488651Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-16T23:07:13.0490461Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-16T23:07:13.3885981Z Fetched 2667 kB in 0s (60.6 MB/s) 2021-05-16T23:07:13.4170240Z Selecting previously unselected package libgpg-error-dev. 2021-05-16T23:07:13.4245769Z (Reading database ... 2021-05-16T23:07:13.4246677Z (Reading database ... 5% 2021-05-16T23:07:13.4247671Z (Reading database 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2021-05-16T23:07:13.5288297Z (Reading database ... 268047 files and directories currently installed.) 2021-05-16T23:07:13.5386896Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-16T23:07:13.5404726Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-16T23:07:13.5834997Z Selecting previously unselected package libgcrypt20-dev. 2021-05-16T23:07:13.6036686Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-16T23:07:13.6053915Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-16T23:07:13.6836264Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-16T23:07:13.7086526Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-16T23:07:13.7107633Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-16T23:07:13.7351639Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-16T23:07:13.7617674Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T23:07:13.7630161Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:13.8075354Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-16T23:07:13.8291736Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T23:07:13.8303718Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:13.8635775Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-16T23:07:13.8830604Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T23:07:13.8847323Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:13.9172834Z Selecting previously unselected package libgit2-28:amd64. 2021-05-16T23:07:13.9437233Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-16T23:07:13.9449065Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T23:07:14.0116018Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-16T23:07:14.0287253Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-16T23:07:14.0299783Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:14.1156791Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-16T23:07:14.1425837Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-16T23:07:14.1437878Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-16T23:07:14.1979239Z Selecting previously unselected package libhttp-parser-dev. 2021-05-16T23:07:14.2249786Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-16T23:07:14.2261546Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-16T23:07:14.2507491Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-16T23:07:14.2776855Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-16T23:07:14.2786965Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T23:07:14.4027786Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-16T23:07:14.4061203Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:14.4093293Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-16T23:07:14.4122594Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-16T23:07:14.4152146Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:14.4192460Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:14.4220970Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-16T23:07:14.4252716Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-16T23:07:14.4285837Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-16T23:07:14.4316901Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T23:07:14.4355069Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-16T23:07:14.4407611Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:07:19.2032094Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-16T23:07:19.3319820Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:07:21.3873782Z Reading package lists... 2021-05-16T23:07:21.5420808Z Building dependency tree... 2021-05-16T23:07:21.5441290Z Reading state information... 2021-05-16T23:07:21.7798757Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-16T23:07:21.7800257Z libtiff-dev set to manually installed. 2021-05-16T23:07:21.7801243Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:21.8408783Z Reading package lists... 2021-05-16T23:07:21.9909309Z Building dependency tree... 2021-05-16T23:07:21.9930434Z Reading state information... 2021-05-16T23:07:22.2157659Z unixodbc-dev is already the newest version (2.3.7). 2021-05-16T23:07:22.2159131Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:22.2809800Z Reading package lists... 2021-05-16T23:07:22.4255216Z Building dependency tree... 2021-05-16T23:07:22.4276273Z Reading state information... 2021-05-16T23:07:22.6228978Z The following NEW packages will be installed: 2021-05-16T23:07:22.6231447Z libsodium-dev 2021-05-16T23:07:22.6434184Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:22.6435862Z Need to get 169 kB of archives. 2021-05-16T23:07:22.6436977Z After this operation, 826 kB of additional disk space will be used. 2021-05-16T23:07:22.6439285Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-16T23:07:23.0713369Z Fetched 169 kB in 0s (8738 kB/s) 2021-05-16T23:07:23.1033731Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-16T23:07:23.1101190Z (Reading database ... 2021-05-16T23:07:23.1101981Z (Reading database ... 5% 2021-05-16T23:07:23.1102527Z (Reading database ... 10% 2021-05-16T23:07:23.1103040Z (Reading database ... 15% 2021-05-16T23:07:23.1103565Z (Reading database ... 20% 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2021-05-16T23:07:23.2211330Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-16T23:07:23.2225309Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-16T23:07:23.3049851Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-16T23:07:25.2836722Z Reading package lists... 2021-05-16T23:07:25.4204025Z Building dependency tree... 2021-05-16T23:07:25.4223878Z Reading state information... 2021-05-16T23:07:25.5534269Z The following additional packages will be installed: 2021-05-16T23:07:25.5538044Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-16T23:07:25.5970836Z The following NEW packages will be installed: 2021-05-16T23:07:25.5973560Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-16T23:07:25.5974973Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-16T23:07:25.6174675Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:25.6176340Z Need to get 10.4 MB of archives. 2021-05-16T23:07:25.6177718Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-16T23:07:25.6179694Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-16T23:07:25.6273009Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-16T23:07:25.6508936Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-16T23:07:25.6759189Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-16T23:07:25.6970423Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-16T23:07:25.7243672Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-16T23:07:25.7544593Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-16T23:07:25.8415613Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-16T23:07:26.2331403Z Fetched 10.4 MB in 0s (42.7 MB/s) 2021-05-16T23:07:26.2639551Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-16T23:07:26.2710677Z (Reading database ... 2021-05-16T23:07:26.2711197Z (Reading database ... 5% 2021-05-16T23:07:26.2711641Z (Reading database ... 10% 2021-05-16T23:07:26.2712096Z (Reading database ... 15% 2021-05-16T23:07:26.2712534Z (Reading database ... 20% 2021-05-16T23:07:26.2713004Z (Reading database ... 25% 2021-05-16T23:07:26.2713454Z (Reading database ... 30% 2021-05-16T23:07:26.2714169Z (Reading database ... 35% 2021-05-16T23:07:26.2714620Z (Reading database ... 40% 2021-05-16T23:07:26.2715059Z (Reading database ... 45% 2021-05-16T23:07:26.2715506Z (Reading database 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.../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-16T23:07:26.4932689Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-16T23:07:26.6029865Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-16T23:07:26.6230763Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-16T23:07:26.6241399Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-16T23:07:26.7835908Z Selecting previously unselected package libtesseract4:amd64. 2021-05-16T23:07:26.8096690Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-16T23:07:26.8114462Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-16T23:07:26.9436490Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-16T23:07:26.9690344Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-16T23:07:26.9712256Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-16T23:07:27.1396115Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-16T23:07:27.1597827Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-16T23:07:27.1613874Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-16T23:07:27.3396725Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-16T23:07:27.3624519Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-16T23:07:27.3640039Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-16T23:07:27.6836696Z Selecting previously unselected package tesseract-ocr. 2021-05-16T23:07:27.7052548Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-16T23:07:27.7062119Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-16T23:07:27.7881501Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-16T23:07:27.7917753Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-16T23:07:27.7947921Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-16T23:07:27.7973537Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-16T23:07:27.8000255Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-16T23:07:27.8029850Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-16T23:07:27.8059012Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-16T23:07:27.8091774Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-16T23:07:27.8120852Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:07:30.5930698Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:07:32.4983560Z Reading package lists... 2021-05-16T23:07:32.6509972Z Building dependency tree... 2021-05-16T23:07:32.6529717Z Reading state information... 2021-05-16T23:07:32.8598251Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-16T23:07:32.8599706Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:32.9201150Z Reading package lists... 2021-05-16T23:07:33.0571484Z Building dependency tree... 2021-05-16T23:07:33.0590018Z Reading state information... 2021-05-16T23:07:33.1950420Z The following additional packages will be installed: 2021-05-16T23:07:33.1955814Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-16T23:07:33.1958239Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-16T23:07:33.1960798Z Suggested packages: 2021-05-16T23:07:33.1962796Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-16T23:07:33.2429901Z The following NEW packages will be installed: 2021-05-16T23:07:33.2432280Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-16T23:07:33.2435615Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-16T23:07:33.2627108Z 0 upgraded, 10 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:33.2628116Z Need to get 1459 kB of archives. 2021-05-16T23:07:33.2628867Z After this operation, 7754 kB of additional disk space will be used. 2021-05-16T23:07:33.2630902Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-16T23:07:33.2656572Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-16T23:07:33.2662736Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-16T23:07:33.2668163Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-16T23:07:33.2673171Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-16T23:07:33.2679247Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-16T23:07:33.2706714Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-16T23:07:33.2762499Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-16T23:07:33.2780335Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-16T23:07:33.2787482Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-16T23:07:33.6877526Z Fetched 1459 kB in 0s (37.5 MB/s) 2021-05-16T23:07:33.7178548Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-16T23:07:33.7253709Z (Reading database ... 2021-05-16T23:07:33.7254545Z (Reading database ... 5% 2021-05-16T23:07:33.7255276Z (Reading database ... 10% 2021-05-16T23:07:33.7255975Z (Reading database ... 15% 2021-05-16T23:07:33.7256675Z (Reading database ... 20% 2021-05-16T23:07:33.7257368Z (Reading database ... 25% 2021-05-16T23:07:33.7258062Z (Reading database ... 30% 2021-05-16T23:07:33.7258750Z (Reading database ... 35% 2021-05-16T23:07:33.7259515Z (Reading database ... 40% 2021-05-16T23:07:33.7260114Z (Reading database ... 45% 2021-05-16T23:07:33.7260712Z (Reading database ... 50% 2021-05-16T23:07:33.7274649Z (Reading database ... 55% 2021-05-16T23:07:33.7310407Z (Reading database ... 60% 2021-05-16T23:07:33.7338057Z (Reading database ... 65% 2021-05-16T23:07:33.7449517Z (Reading database ... 70% 2021-05-16T23:07:33.7546778Z (Reading database ... 75% 2021-05-16T23:07:33.7570461Z (Reading database ... 80% 2021-05-16T23:07:33.8020392Z (Reading database ... 85% 2021-05-16T23:07:33.8157411Z (Reading database ... 90% 2021-05-16T23:07:33.8220797Z (Reading database ... 95% 2021-05-16T23:07:33.8221299Z (Reading database ... 100% 2021-05-16T23:07:33.8222050Z (Reading database ... 268845 files and directories currently installed.) 2021-05-16T23:07:33.8317841Z Preparing to unpack .../0-libgssrpc4_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T23:07:33.8347131Z Unpacking libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:33.8632302Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-16T23:07:33.8877594Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T23:07:33.8889412Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:33.9195974Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-16T23:07:33.9403320Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T23:07:33.9413405Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:33.9741725Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-16T23:07:33.9925295Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T23:07:33.9934369Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.0314969Z Selecting previously unselected package comerr-dev:amd64. 2021-05-16T23:07:34.0488680Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-16T23:07:34.0523920Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-16T23:07:34.0836176Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-16T23:07:34.1032940Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T23:07:34.1043861Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.1412389Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-16T23:07:34.1688409Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-16T23:07:34.1701374Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-16T23:07:34.2516281Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-16T23:07:34.2720897Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-16T23:07:34.2734668Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-16T23:07:34.3195806Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-16T23:07:34.3427881Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-16T23:07:34.3441158Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.3755220Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-16T23:07:34.3984781Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-16T23:07:34.3996621Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-16T23:07:34.5045978Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-16T23:07:34.5083385Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.5115538Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-16T23:07:34.5141578Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-16T23:07:34.5183974Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.5212942Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.5244028Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.5268079Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.5294004Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-16T23:07:34.5320143Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-16T23:07:34.5347081Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:07:34.5528526Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:07:37.4843935Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-16T23:07:39.5012998Z Reading package lists... 2021-05-16T23:07:39.6341449Z Building dependency tree... 2021-05-16T23:07:39.6356215Z Reading state information... 2021-05-16T23:07:39.7876996Z E: Unable to locate package udunits 2021-05-16T23:07:39.8461079Z Reading package lists... 2021-05-16T23:07:39.9814544Z Building dependency tree... 2021-05-16T23:07:39.9835507Z Reading state information... 2021-05-16T23:07:40.1199551Z The following additional packages will be installed: 2021-05-16T23:07:40.1203780Z libwebpdemux2 2021-05-16T23:07:40.1605845Z The following NEW packages will be installed: 2021-05-16T23:07:40.1607622Z libwebp-dev libwebpdemux2 2021-05-16T23:07:40.2666151Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:40.2667187Z Need to get 277 kB of archives. 2021-05-16T23:07:40.2668334Z After this operation, 965 kB of additional disk space will be used. 2021-05-16T23:07:40.2670369Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-16T23:07:40.2681222Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-16T23:07:40.6675300Z Fetched 277 kB in 0s (2582 kB/s) 2021-05-16T23:07:40.6987350Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-16T23:07:40.7056684Z (Reading database ... 2021-05-16T23:07:40.7057450Z (Reading database ... 5% 2021-05-16T23:07:40.7058061Z (Reading database ... 10% 2021-05-16T23:07:40.7058673Z (Reading database ... 15% 2021-05-16T23:07:40.7059440Z (Reading database ... 20% 2021-05-16T23:07:40.7060070Z (Reading database ... 25% 2021-05-16T23:07:40.7060660Z (Reading database ... 30% 2021-05-16T23:07:40.7061271Z (Reading database ... 35% 2021-05-16T23:07:40.7061872Z (Reading database ... 40% 2021-05-16T23:07:40.7062460Z (Reading database ... 45% 2021-05-16T23:07:40.7063061Z (Reading database ... 50% 2021-05-16T23:07:40.7096981Z (Reading database ... 55% 2021-05-16T23:07:40.7133884Z (Reading database ... 60% 2021-05-16T23:07:40.7158198Z (Reading database ... 65% 2021-05-16T23:07:40.7266044Z (Reading database ... 70% 2021-05-16T23:07:40.7371251Z (Reading database ... 75% 2021-05-16T23:07:40.7394812Z (Reading database ... 80% 2021-05-16T23:07:40.7843727Z (Reading database ... 85% 2021-05-16T23:07:40.7992108Z (Reading database ... 90% 2021-05-16T23:07:40.8058656Z (Reading database ... 95% 2021-05-16T23:07:40.8059315Z (Reading database ... 100% 2021-05-16T23:07:40.8060284Z (Reading database ... 269145 files and directories currently installed.) 2021-05-16T23:07:40.8150361Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-16T23:07:40.8173097Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-16T23:07:40.8435710Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-16T23:07:40.8630886Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-16T23:07:40.8642346Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-16T23:07:40.9431373Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-16T23:07:40.9470707Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-16T23:07:40.9507091Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:07:42.8421477Z Reading package lists... 2021-05-16T23:07:42.9938994Z Building dependency tree... 2021-05-16T23:07:42.9959241Z Reading state information... 2021-05-16T23:07:43.1463907Z The following additional packages will be installed: 2021-05-16T23:07:43.1467612Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-16T23:07:43.1470935Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-16T23:07:43.1473780Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-16T23:07:43.1479797Z Suggested packages: 2021-05-16T23:07:43.1481430Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-16T23:07:43.1482664Z Recommended packages: 2021-05-16T23:07:43.1483524Z cargo 2021-05-16T23:07:43.1933409Z The following NEW packages will be installed: 2021-05-16T23:07:43.1936474Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-16T23:07:43.1938008Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-16T23:07:43.1939330Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-16T23:07:43.2280961Z 0 upgraded, 13 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:07:43.2281753Z Need to get 108 MB of archives. 2021-05-16T23:07:43.2282548Z After this operation, 501 MB of additional disk space will be used. 2021-05-16T23:07:43.2284391Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-16T23:07:43.2330513Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-16T23:07:43.2340524Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-16T23:07:43.2357219Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-16T23:07:43.2445666Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-16T23:07:43.2505034Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-16T23:07:43.2512332Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-16T23:07:43.3900860Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-16T23:07:44.5303944Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-16T23:07:44.8693050Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-16T23:07:44.8895731Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-16T23:07:44.9213948Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-16T23:07:45.0276086Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-16T23:07:45.4315620Z Fetched 108 MB in 2s (59.0 MB/s) 2021-05-16T23:07:45.4661078Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-16T23:07:45.4737853Z (Reading database ... 2021-05-16T23:07:45.4738392Z (Reading database ... 5% 2021-05-16T23:07:45.4738836Z (Reading database ... 10% 2021-05-16T23:07:45.4739286Z (Reading database ... 15% 2021-05-16T23:07:45.4739721Z (Reading database ... 20% 2021-05-16T23:07:45.4740164Z (Reading database ... 25% 2021-05-16T23:07:45.4740594Z (Reading database ... 30% 2021-05-16T23:07:45.4741039Z (Reading database ... 35% 2021-05-16T23:07:45.4741482Z (Reading database ... 40% 2021-05-16T23:07:45.4741912Z (Reading database ... 45% 2021-05-16T23:07:45.4742359Z (Reading database ... 50% 2021-05-16T23:07:45.4778084Z (Reading database ... 55% 2021-05-16T23:07:45.4820208Z (Reading database ... 60% 2021-05-16T23:07:45.4851463Z (Reading database ... 65% 2021-05-16T23:07:45.4973338Z (Reading database ... 70% 2021-05-16T23:07:45.5098830Z (Reading database ... 75% 2021-05-16T23:07:45.5120274Z (Reading database ... 80% 2021-05-16T23:07:45.5594762Z (Reading database ... 85% 2021-05-16T23:07:45.5745312Z (Reading database ... 90% 2021-05-16T23:07:45.5813126Z (Reading database ... 95% 2021-05-16T23:07:45.5814145Z (Reading database ... 100% 2021-05-16T23:07:45.5815544Z (Reading database ... 269173 files and directories currently installed.) 2021-05-16T23:07:45.5907960Z Preparing to unpack .../00-libbabeltrace1_1.5.8-1build1_amd64.deb ... 2021-05-16T23:07:45.5932864Z Unpacking libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-16T23:07:45.6395693Z Selecting previously unselected package libipt2. 2021-05-16T23:07:45.6596295Z Preparing to unpack .../01-libipt2_2.0.1-1_amd64.deb ... 2021-05-16T23:07:45.6609503Z Unpacking libipt2 (2.0.1-1) ... 2021-05-16T23:07:45.6908869Z Selecting previously unselected package libsource-highlight-common. 2021-05-16T23:07:45.7116525Z Preparing to unpack .../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-16T23:07:45.7128155Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-16T23:07:45.7636160Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-16T23:07:45.7837130Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-16T23:07:45.7848621Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-16T23:07:45.8513198Z Selecting previously unselected package libsource-highlight4v5. 2021-05-16T23:07:45.8759142Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-16T23:07:45.8770504Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-16T23:07:45.9234976Z Selecting previously unselected package libxxhash0:amd64. 2021-05-16T23:07:45.9483150Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-16T23:07:45.9494677Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-16T23:07:45.9835854Z Selecting previously unselected package gdb. 2021-05-16T23:07:46.0010500Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-16T23:07:46.0022592Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-16T23:07:46.3365170Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-16T23:07:46.3641114Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T23:07:46.3651339Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T23:07:52.2996642Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-16T23:07:52.3176178Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-16T23:07:52.3188023Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T23:07:55.2035100Z Selecting previously unselected package rustc. 2021-05-16T23:07:55.2262526Z Preparing to unpack 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libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T23:07:56.9976979Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-16T23:07:57.0002419Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-16T23:07:57.0033350Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T23:07:57.0066162Z Setting up libipt2 (2.0.1-1) ... 2021-05-16T23:07:57.0093890Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-16T23:07:57.0120940Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-16T23:07:57.0144242Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T23:07:57.0174942Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-16T23:07:57.0211995Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-16T23:07:57.0239460Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-16T23:07:57.0266762Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-16T23:07:57.0306875Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-16T23:07:57.0338862Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:07:57.0581845Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:08:00.2277882Z Reading package lists... 2021-05-16T23:08:00.3598480Z Building dependency tree... 2021-05-16T23:08:00.3616055Z Reading state information... 2021-05-16T23:08:00.5097108Z The following additional packages will be installed: 2021-05-16T23:08:00.5100612Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-16T23:08:00.5103755Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-16T23:08:00.5106728Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-16T23:08:00.5109616Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-16T23:08:00.5112534Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-16T23:08:00.5118219Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-16T23:08:00.5120595Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-16T23:08:00.5123275Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-16T23:08:00.5125970Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-16T23:08:00.5128550Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-16T23:08:00.5131550Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-16T23:08:00.5134316Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-16T23:08:00.5135904Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-16T23:08:00.5137138Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-16T23:08:00.5138321Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-16T23:08:00.5139529Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-16T23:08:00.5140589Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-16T23:08:00.5141883Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-16T23:08:00.5143189Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-16T23:08:00.5144234Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-16T23:08:00.5145267Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-16T23:08:00.5146365Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-16T23:08:00.5147384Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-16T23:08:00.5148364Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-16T23:08:00.5149350Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-16T23:08:00.5150550Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-16T23:08:00.5151737Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-16T23:08:00.5152970Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-16T23:08:00.5154370Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-16T23:08:00.5155375Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-16T23:08:00.5156327Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-16T23:08:00.5157239Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-16T23:08:00.5158239Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-16T23:08:00.5159265Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-16T23:08:00.5160365Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-16T23:08:00.5161477Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-16T23:08:00.5162502Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-16T23:08:00.5163510Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-16T23:08:00.5164467Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-16T23:08:00.5165518Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-16T23:08:00.5166588Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-16T23:08:00.5167551Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-16T23:08:00.5168539Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-16T23:08:00.5169682Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-16T23:08:00.5170889Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-16T23:08:00.5171912Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-16T23:08:00.5172933Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-16T23:08:00.5174041Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-16T23:08:00.5174973Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-16T23:08:00.5175524Z Suggested packages: 2021-05-16T23:08:00.5176571Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-16T23:08:00.5177874Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-16T23:08:00.5179314Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-16T23:08:00.5181219Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-16T23:08:00.5183376Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-16T23:08:00.5184795Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-16T23:08:00.5186309Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-16T23:08:00.5187968Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-16T23:08:00.5189402Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-16T23:08:00.5190848Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-16T23:08:00.5192481Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-16T23:08:00.5194260Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-16T23:08:00.5195308Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-16T23:08:00.5196086Z wpagui libengine-pkcs11-openssl 2021-05-16T23:08:00.5898493Z The following NEW packages will be installed: 2021-05-16T23:08:00.5900433Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-16T23:08:00.5902101Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-16T23:08:00.5903941Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-16T23:08:00.5906027Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-16T23:08:00.5907244Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-16T23:08:00.5908391Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-16T23:08:00.5909456Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-16T23:08:00.5910661Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-16T23:08:00.5911897Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-16T23:08:00.5913069Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-16T23:08:00.5914384Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-16T23:08:00.5915625Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-16T23:08:00.5917003Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-16T23:08:00.5918238Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-16T23:08:00.5919402Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-16T23:08:00.5920517Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-16T23:08:00.5921583Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-16T23:08:00.5922647Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-16T23:08:00.5923769Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-16T23:08:00.5924673Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-16T23:08:00.5925563Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-16T23:08:00.5926507Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-16T23:08:00.5927386Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-16T23:08:00.5928234Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-16T23:08:00.5929372Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-16T23:08:00.5930566Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-16T23:08:00.5931750Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-16T23:08:00.5932979Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-16T23:08:00.5934406Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-16T23:08:00.5935573Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-16T23:08:00.5936666Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-16T23:08:00.5937730Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-16T23:08:00.5938891Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-16T23:08:00.5940169Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-16T23:08:00.5941444Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-16T23:08:00.5942559Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-16T23:08:00.5943735Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-16T23:08:00.5945359Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-16T23:08:00.5946329Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-16T23:08:00.5947560Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-16T23:08:00.5948801Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-16T23:08:00.5950416Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-16T23:08:00.5951829Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-16T23:08:00.5953357Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-16T23:08:00.5955181Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-16T23:08:00.5956788Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-16T23:08:00.5958244Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-16T23:08:00.5959833Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-16T23:08:00.5961169Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-16T23:08:00.6145430Z 0 upgraded, 214 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:08:00.6146008Z Need to get 183 MB of archives. 2021-05-16T23:08:00.6146904Z After this operation, 776 MB of additional disk space will be used. 2021-05-16T23:08:00.6148406Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-16T23:08:00.6172551Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-16T23:08:00.6514743Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-16T23:08:00.6528312Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-16T23:08:00.6536865Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-16T23:08:00.6545412Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-16T23:08:00.6553663Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-16T23:08:00.6558926Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-16T23:08:00.6566701Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-16T23:08:00.6572130Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-16T23:08:00.6587567Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-16T23:08:00.6613424Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-16T23:08:00.6691049Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-16T23:08:00.6697250Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-16T23:08:00.6701603Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-16T23:08:00.6727534Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-16T23:08:00.6729326Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-16T23:08:00.6731283Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-16T23:08:00.6733080Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-16T23:08:00.6734610Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-16T23:08:00.6741547Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-16T23:08:00.6748357Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-16T23:08:00.6756326Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-16T23:08:00.7219341Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-16T23:08:00.7622659Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-16T23:08:00.7646543Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-16T23:08:00.7691058Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-16T23:08:00.7812409Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-16T23:08:00.7820689Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-16T23:08:00.7852928Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-16T23:08:00.7887619Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-16T23:08:00.8170302Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-16T23:08:00.8363949Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-16T23:08:00.8387797Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-16T23:08:00.8399298Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-16T23:08:00.8412634Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-16T23:08:01.0663366Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-16T23:08:01.0671523Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-16T23:08:01.0803361Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-16T23:08:01.0861953Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-16T23:08:01.0891226Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-16T23:08:01.0920399Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-16T23:08:01.0927777Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-16T23:08:01.0960214Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-16T23:08:01.0973603Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-16T23:08:01.1002640Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-16T23:08:01.1032715Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-16T23:08:01.1101864Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-16T23:08:01.1112657Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-16T23:08:01.1195003Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-16T23:08:01.1204348Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-16T23:08:01.1221418Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-16T23:08:01.1239448Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-16T23:08:01.1252630Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-16T23:08:01.1345084Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-16T23:08:01.1355616Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-16T23:08:01.2637030Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-16T23:08:01.2755348Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-16T23:08:01.2764271Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-16T23:08:01.2823738Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-16T23:08:01.2834301Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-16T23:08:01.2843213Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-16T23:08:01.2857970Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-16T23:08:01.2884414Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-16T23:08:01.2898265Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-16T23:08:01.2965987Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-16T23:08:01.2994172Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-16T23:08:01.3046727Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-16T23:08:01.3254328Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-16T23:08:01.3391783Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-16T23:08:01.4447233Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-16T23:08:01.4455627Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-16T23:08:01.4460420Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-16T23:08:01.4466574Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-16T23:08:01.4485654Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-16T23:08:01.4538412Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-16T23:08:01.4547539Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-16T23:08:01.5396579Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-16T23:08:01.5404946Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-16T23:08:01.5414347Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-16T23:08:01.5624697Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-16T23:08:01.5633233Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-16T23:08:01.5658861Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-16T23:08:01.5740425Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-16T23:08:01.6328437Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-16T23:08:01.6664264Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-16T23:08:01.6673587Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-16T23:08:01.6684277Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-16T23:08:01.6744096Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-16T23:08:01.6790534Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-16T23:08:01.6794504Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-16T23:08:01.6826231Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-16T23:08:01.6856317Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-16T23:08:01.6887943Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-16T23:08:01.6911498Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-16T23:08:01.6923351Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-16T23:08:01.7408758Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-16T23:08:01.7514203Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-16T23:08:01.7561027Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-16T23:08:01.7563122Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-16T23:08:01.7609135Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-16T23:08:01.7642224Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-16T23:08:01.7697106Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-16T23:08:01.7710319Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-16T23:08:01.7717858Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-16T23:08:01.7805213Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-16T23:08:01.7811358Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-16T23:08:02.2778834Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-16T23:08:02.2795484Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-16T23:08:02.2804675Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-16T23:08:02.2958877Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-16T23:08:02.3406615Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-16T23:08:02.3414321Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-16T23:08:02.3418141Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-16T23:08:02.3475457Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-16T23:08:02.3479192Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-16T23:08:02.4164915Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-16T23:08:02.4316919Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-16T23:08:02.4334711Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-16T23:08:02.4339939Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-16T23:08:02.4342241Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-16T23:08:02.4363535Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-16T23:08:02.4379159Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-16T23:08:02.4381410Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-16T23:08:02.4383671Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-16T23:08:02.4396924Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-16T23:08:02.4398571Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-16T23:08:02.4403693Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-16T23:08:02.4409389Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-16T23:08:02.4412241Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-16T23:08:02.4417441Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-16T23:08:02.4425910Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-16T23:08:02.4439791Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-16T23:08:02.4547878Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-16T23:08:02.4559013Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-16T23:08:02.4563812Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-16T23:08:02.4577823Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-16T23:08:02.4632202Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-16T23:08:02.4644764Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-16T23:08:02.4661176Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-16T23:08:02.4664607Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-16T23:08:02.4680096Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-16T23:08:02.4690276Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-16T23:08:02.4699224Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-16T23:08:02.4714610Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-16T23:08:02.4724377Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-16T23:08:02.4726764Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-16T23:08:02.4748896Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-16T23:08:02.4822082Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-16T23:08:02.5056751Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-16T23:08:02.5060234Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-16T23:08:02.5101940Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-16T23:08:02.5115180Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-16T23:08:02.5121852Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-16T23:08:02.5156910Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-16T23:08:02.5160804Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-16T23:08:02.5425590Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-16T23:08:02.5505163Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-16T23:08:02.5605167Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-16T23:08:02.5855088Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-16T23:08:02.5885664Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-16T23:08:02.5908189Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-16T23:08:02.5915811Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-16T23:08:02.5962284Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-16T23:08:02.5964348Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-16T23:08:02.5982619Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-16T23:08:02.5986189Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-16T23:08:02.6051823Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-16T23:08:02.6085518Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-16T23:08:02.6345123Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-16T23:08:02.6393702Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-16T23:08:02.6402040Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-16T23:08:02.6405700Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-16T23:08:02.6448270Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-16T23:08:02.6450071Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-16T23:08:02.6452063Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-16T23:08:02.6454007Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-16T23:08:02.6456068Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-16T23:08:02.6458109Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-16T23:08:02.6460098Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-16T23:08:02.6462120Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-16T23:08:02.6465204Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-16T23:08:02.6589334Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-16T23:08:02.6597684Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-16T23:08:02.7261836Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-16T23:08:02.7270092Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-16T23:08:02.7273760Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-16T23:08:02.7310358Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-16T23:08:02.7313769Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-16T23:08:02.7324872Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-16T23:08:02.7372897Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-16T23:08:02.7376435Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-16T23:08:02.7522949Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-16T23:08:02.7540382Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-16T23:08:02.7553004Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-16T23:08:02.7730932Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-16T23:08:02.7754917Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-16T23:08:02.7765700Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-16T23:08:02.7772248Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-16T23:08:02.7785807Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-16T23:08:02.7973530Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-16T23:08:02.8907668Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-16T23:08:02.8943256Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-16T23:08:02.9055544Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-16T23:08:03.3120803Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-16T23:08:03.4067054Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-16T23:08:03.4174689Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-16T23:08:03.4201401Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-16T23:08:03.4339463Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-16T23:08:03.4365241Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-16T23:08:03.4640009Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-16T23:08:03.4840403Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-16T23:08:03.4858182Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-16T23:08:03.4868008Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-16T23:08:04.5699159Z Fetched 183 MB in 3s (63.3 MB/s) 2021-05-16T23:08:04.6031089Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-16T23:08:04.6102438Z (Reading database ... 2021-05-16T23:08:04.6102968Z (Reading database ... 5% 2021-05-16T23:08:04.6103408Z (Reading database ... 10% 2021-05-16T23:08:04.6103862Z (Reading database ... 15% 2021-05-16T23:08:04.6104373Z (Reading database ... 20% 2021-05-16T23:08:04.6104764Z (Reading database ... 25% 2021-05-16T23:08:04.6105135Z (Reading database ... 30% 2021-05-16T23:08:04.6105523Z (Reading database ... 35% 2021-05-16T23:08:04.6105899Z (Reading database ... 40% 2021-05-16T23:08:04.6106367Z (Reading database ... 45% 2021-05-16T23:08:04.6106791Z (Reading database ... 50% 2021-05-16T23:08:04.6142871Z (Reading database ... 55% 2021-05-16T23:08:04.6183438Z (Reading database ... 60% 2021-05-16T23:08:04.6215307Z (Reading database ... 65% 2021-05-16T23:08:04.6320928Z (Reading database ... 70% 2021-05-16T23:08:04.6429895Z (Reading database ... 75% 2021-05-16T23:08:04.6456408Z (Reading database ... 80% 2021-05-16T23:08:04.6931049Z (Reading database ... 85% 2021-05-16T23:08:04.7082841Z (Reading database ... 90% 2021-05-16T23:08:04.7151224Z (Reading database ... 95% 2021-05-16T23:08:04.7152061Z (Reading database ... 100% 2021-05-16T23:08:04.7153321Z (Reading database ... 269928 files and directories currently installed.) 2021-05-16T23:08:04.7255049Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-16T23:08:04.7277387Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-16T23:08:04.7635158Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-16T23:08:04.7897534Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-16T23:08:04.7969760Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:04.9745484Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-16T23:08:05.0021070Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-16T23:08:05.0030596Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-16T23:08:05.0343415Z Selecting previously unselected package libegl1:amd64. 2021-05-16T23:08:05.0625680Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-16T23:08:05.0637317Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-16T23:08:05.0915998Z Selecting previously unselected package libevdev2:amd64. 2021-05-16T23:08:05.1176908Z Preparing to unpack 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2021-05-16T23:08:39.4971436Z Setting up libkmldom1:amd64 (1.3.0-8build1) ... 2021-05-16T23:08:39.5009645Z Setting up libspatialite7:amd64 (4.3.0a-6build1) ... 2021-05-16T23:08:39.5038451Z Setting up libgcr-ui-3-1:amd64 (3.36.0-2build1) ... 2021-05-16T23:08:39.5065270Z Setting up python3-matplotlib (3.1.2-1ubuntu4) ... 2021-05-16T23:08:40.3929003Z Setting up libkmlengine1:amd64 (1.3.0-8build1) ... 2021-05-16T23:08:40.3963101Z Setting up libqt5keychain1:amd64 (0.10.0-1build1) ... 2021-05-16T23:08:40.3991576Z Setting up libsqlite3-mod-spatialite:amd64 (4.3.0a-6build1) ... 2021-05-16T23:08:40.4018581Z Setting up qdoc-qt5 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:40.4048120Z Setting up libqt5positioning5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:40.4074263Z Setting up proj-bin (6.3.1-1) ... 2021-05-16T23:08:40.4101390Z Setting up libqca-qt5-2-plugins:amd64 (2.2.1-2build1) ... 2021-05-16T23:08:40.4128254Z Setting up libgstreamer-plugins-base1.0-0:amd64 (1.16.2-4) ... 2021-05-16T23:08:40.4153011Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-16T23:08:40.7977995Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-16T23:08:40.8004190Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:40.8032736Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-16T23:08:40.9663238Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-16T23:08:40.9703207Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-16T23:08:41.1249035Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:41.1276557Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-16T23:08:41.3058501Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-16T23:08:41.3085854Z Setting up gcr (3.36.0-2build1) ... 2021-05-16T23:08:41.3118736Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:41.3155186Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-16T23:08:41.4569062Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-16T23:08:41.4571790Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-16T23:08:41.9611386Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-16T23:08:42.2281329Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:42.2309159Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-16T23:08:42.2342610Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:42.2372260Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:08:42.2408481Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:42.2440861Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:42.2477385Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-16T23:08:42.4027395Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:42.4029413Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-16T23:08:42.4031057Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:42.4032550Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-16T23:08:42.4457366Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:42.4458523Z if direction is "increasing": 2021-05-16T23:08:42.4459748Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:42.4460668Z elif direction is "decreasing": 2021-05-16T23:08:42.4631804Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:42.4632997Z if direction is "increasing": 2021-05-16T23:08:42.4634584Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:42.4635591Z elif direction is "decreasing": 2021-05-16T23:08:43.3805167Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:43.3808452Z if props["offset_coordinates"] is "data": 2021-05-16T23:08:43.3811818Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-16T23:08:43.3814162Z if props["coordinates"] is not "data": 2021-05-16T23:08:44.5650484Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-16T23:08:44.5945374Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-16T23:08:44.5949411Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-16T23:08:44.5953097Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-16T23:08:45.6978322Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-16T23:08:45.7011832Z First installation detected... 2021-05-16T23:08:45.7012774Z Checking NSS setup... 2021-05-16T23:08:45.7066662Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-16T23:08:45.7105669Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:45.7136184Z Setting up python3-owslib (0.19.1-1) ... 2021-05-16T23:08:45.9773688Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-16T23:08:45.9812128Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-16T23:08:45.9839812Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-16T23:08:45.9874567Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-16T23:08:45.9909298Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-16T23:08:45.9942452Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-16T23:08:45.9971277Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-16T23:08:46.0004334Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-16T23:08:46.0031473Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-16T23:08:46.2086289Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-16T23:08:46.2120682Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-16T23:08:46.2145654Z Setting up grass-core (7.8.2-1build3) ... 2021-05-16T23:08:46.5401025Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:46.5404011Z if value is '': 2021-05-16T23:08:46.6282385Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:46.6283810Z if do_profiling is "True" or do_profiling is "1": 2021-05-16T23:08:46.6285383Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:46.6286783Z if do_profiling is "True" or do_profiling is "1": 2021-05-16T23:08:46.6288354Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-16T23:08:46.6289806Z if driver_string is not None and driver_string is not "": 2021-05-16T23:08:46.6736260Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:46.6738395Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-16T23:08:46.6740679Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-16T23:08:46.6742703Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-16T23:08:46.7354020Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-16T23:08:46.7378564Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.7461107Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-16T23:08:46.7491405Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.7520929Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.7695392Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:46.7721404Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.7747137Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.7779188Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:08:46.7813024Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.7840742Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-16T23:08:46.8704284Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:46.8736869Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.8766247Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:46.8796217Z Setting up modemmanager (1.12.8-1) ... 2021-05-16T23:08:47.0007571Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-16T23:08:47.0009947Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-16T23:08:47.4959899Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.4991799Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5016996Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-16T23:08:47.5043322Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5071710Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:47.5100194Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5130832Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-05-16T23:08:47.5162238Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-05-16T23:08:47.5191019Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-05-16T23:08:47.5218063Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5248312Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5274158Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:08:47.5302444Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:47.5338898Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:08:47.5371451Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:08:47.5396559Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5428759Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-16T23:08:47.5458021Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:08:47.5482996Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:47.5512539Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-16T23:08:47.7134389Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-16T23:08:47.7171786Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:47.7217094Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:08:47.7243643Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.5299026Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:09:21.5338626Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-16T23:09:21.5370718Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.5407424Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:09:21.5432971Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.5456965Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.5496375Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-16T23:09:21.5551838Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.7304618Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.7360877Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-16T23:09:21.7388396Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.7510675Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-16T23:09:21.7594501Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.9302087Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.9340047Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.9379371Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-16T23:09:21.9508357Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-16T23:09:21.9665974Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-16T23:09:22.9037571Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-16T23:09:22.9220336Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-16T23:09:22.9482636Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-16T23:09:22.9654343Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-16T23:09:23.0528024Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-16T23:09:23.0872118Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-16T23:09:23.3317342Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:09:34.5983628Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-16T23:09:34.6176262Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-16T23:09:36.4832053Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-16T23:09:36.4832664Z with: 2021-05-16T23:09:36.4833197Z github_slug: neuroconductor/afnir 2021-05-16T23:09:36.4833697Z env: 2021-05-16T23:09:36.4834416Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:09:36.4834934Z TIC_DEPLOY_KEY: 2021-05-16T23:09:36.4835854Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:09:36.4837708Z GITHUB_PAT: *** 2021-05-16T23:09:36.4838067Z COVERALLS_TOKEN: 2021-05-16T23:09:36.4838517Z continue-on-error: true 2021-05-16T23:09:36.4838939Z VDIFFR_RUN_TESTS: 2021-05-16T23:09:36.4839391Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:09:36.4839910Z TZ: UTC 2021-05-16T23:09:36.4840226Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:09:36.4840547Z NOT_CRAN: true 2021-05-16T23:09:36.4840853Z ##[endgroup] 2021-05-16T23:09:36.5137097Z repo slug is: neuroconductor/afnir 2021-05-16T23:09:36.5254700Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-16T23:09:36.5255307Z env: 2021-05-16T23:09:36.5255764Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:09:36.5256259Z TIC_DEPLOY_KEY: 2021-05-16T23:09:36.5257098Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:09:36.5258406Z GITHUB_PAT: *** 2021-05-16T23:09:36.5258813Z COVERALLS_TOKEN: 2021-05-16T23:09:36.5259261Z continue-on-error: true 2021-05-16T23:09:36.5259686Z VDIFFR_RUN_TESTS: 2021-05-16T23:09:36.5260135Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:09:36.5260549Z TZ: UTC 2021-05-16T23:09:36.5260896Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:09:36.5261282Z NOT_CRAN: true 2021-05-16T23:09:36.5261616Z ##[endgroup] 2021-05-16T23:09:36.7491416Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-16T23:09:36.7492014Z with: 2021-05-16T23:09:36.7492394Z repo_name: afnir 2021-05-16T23:09:36.7492807Z repo_version: 0.4.6 2021-05-16T23:09:36.7493217Z runner_os: Linux 2021-05-16T23:09:36.7493683Z R_version: 4.1 2021-05-16T23:09:36.7494115Z env: 2021-05-16T23:09:36.7494448Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:09:36.7494820Z TIC_DEPLOY_KEY: 2021-05-16T23:09:36.7495444Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:09:36.7496477Z GITHUB_PAT: *** 2021-05-16T23:09:36.7496801Z COVERALLS_TOKEN: 2021-05-16T23:09:36.7497169Z continue-on-error: true 2021-05-16T23:09:36.7497546Z VDIFFR_RUN_TESTS: 2021-05-16T23:09:36.7497924Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:09:36.7498279Z TZ: UTC 2021-05-16T23:09:36.7498577Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:09:36.7498903Z NOT_CRAN: true 2021-05-16T23:09:36.7499211Z ##[endgroup] 2021-05-16T23:09:36.7835944Z Package: afnir 2021-05-16T23:09:36.7840809Z Version: 0.4.6 2021-05-16T23:09:36.7842636Z OS: Linux 2021-05-16T23:09:36.7912262Z ##[group]Run install.packages('remotes') 2021-05-16T23:09:36.7913016Z install.packages('remotes') 2021-05-16T23:09:36.7914038Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-16T23:09:36.7915098Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-16T23:09:36.7921433Z shell: /usr/local/bin/Rscript {0} 2021-05-16T23:09:36.7921822Z env: 2021-05-16T23:09:36.7922224Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:09:36.7922661Z TIC_DEPLOY_KEY: 2021-05-16T23:09:36.7923390Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:09:36.7924598Z GITHUB_PAT: *** 2021-05-16T23:09:36.7924973Z COVERALLS_TOKEN: 2021-05-16T23:09:36.7925406Z continue-on-error: true 2021-05-16T23:09:36.7925844Z VDIFFR_RUN_TESTS: 2021-05-16T23:09:36.7926280Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:09:36.7926703Z TZ: UTC 2021-05-16T23:09:36.7927076Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:09:36.7927450Z NOT_CRAN: true 2021-05-16T23:09:36.7927801Z ##[endgroup] 2021-05-16T23:09:36.9532757Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:09:36.9535227Z (as ‘lib’ is unspecified) 2021-05-16T23:09:50.8030789Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-16T23:09:51.0925259Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-16T23:09:51.1041215Z ================================================== 2021-05-16T23:09:51.1042487Z downloaded 145 KB 2021-05-16T23:09:51.1043278Z 2021-05-16T23:09:51.3705261Z * installing *source* package ‘remotes’ ... 2021-05-16T23:09:51.3743882Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-16T23:09:51.3745687Z ** using staged installation 2021-05-16T23:09:51.3909641Z ** R 2021-05-16T23:09:51.4111971Z ** inst 2021-05-16T23:09:51.4123241Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:09:53.0765133Z ** help 2021-05-16T23:09:53.1651410Z *** installing help indices 2021-05-16T23:09:53.2206177Z ** building package indices 2021-05-16T23:09:53.4508883Z ** installing vignettes 2021-05-16T23:09:53.4572006Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:09:53.6332494Z ** testing if installed package can be loaded from final location 2021-05-16T23:09:53.8526264Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:09:53.8544790Z * DONE (remotes) 2021-05-16T23:09:53.8634885Z 2021-05-16T23:09:53.8635481Z The downloaded source packages are in 2021-05-16T23:09:53.8636859Z ‘/tmp/RtmpZ1IWCL/downloaded_packages’ 2021-05-16T23:10:11.9745474Z ##[group]Run actions/cache@v1 2021-05-16T23:10:11.9745936Z with: 2021-05-16T23:10:11.9746393Z path: /home/runner/work/_temp/Library 2021-05-16T23:10:11.9749602Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-9fcc7ffbaf80352633fd83abab54908fa5275bd962145d115caa235a35c8bcdf 2021-05-16T23:10:11.9753737Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-16T23:10:11.9755200Z env: 2021-05-16T23:10:11.9755667Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:10:11.9756146Z TIC_DEPLOY_KEY: 2021-05-16T23:10:11.9757000Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:10:11.9758850Z GITHUB_PAT: *** 2021-05-16T23:10:11.9759262Z COVERALLS_TOKEN: 2021-05-16T23:10:11.9759773Z continue-on-error: true 2021-05-16T23:10:11.9760257Z VDIFFR_RUN_TESTS: 2021-05-16T23:10:11.9760768Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:10:11.9761286Z TZ: UTC 2021-05-16T23:10:11.9761688Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:10:11.9762120Z NOT_CRAN: true 2021-05-16T23:10:11.9762503Z ##[endgroup] 2021-05-16T23:10:12.0192134Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-16T23:10:12.0253407Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-16T23:10:12.0254432Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-16T23:10:12.0255376Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-16T23:10:12.0256185Z sudo -s eval "$sysreqs" 2021-05-16T23:10:12.0308592Z shell: /usr/bin/bash -e {0} 2021-05-16T23:10:12.0308994Z env: 2021-05-16T23:10:12.0309465Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:10:12.0309963Z TIC_DEPLOY_KEY: 2021-05-16T23:10:12.0310796Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:10:12.0312190Z GITHUB_PAT: *** 2021-05-16T23:10:12.0312594Z COVERALLS_TOKEN: 2021-05-16T23:10:12.0313103Z continue-on-error: true 2021-05-16T23:10:12.0313585Z VDIFFR_RUN_TESTS: 2021-05-16T23:10:12.0314234Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:10:12.0314705Z TZ: UTC 2021-05-16T23:10:12.0315137Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:10:12.0315556Z NOT_CRAN: true 2021-05-16T23:10:12.0316053Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-16T23:10:12.0316543Z ##[endgroup] 2021-05-16T23:10:12.2183053Z Using github PAT from envvar GITHUB_PAT 2021-05-16T23:10:12.7519021Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-16T23:10:28.5370436Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-16T23:10:28.5372713Z crayon (NA -> 1.4.1) [CRAN] 2021-05-16T23:10:28.5374362Z R6 (NA -> 2.5.0) [CRAN] 2021-05-16T23:10:28.5375953Z desc (NA -> 1.3.0) [CRAN] 2021-05-16T23:10:28.5377641Z debugme (NA -> 1.1.0) [CRAN] 2021-05-16T23:10:28.5396349Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-16T23:10:28.5411536Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:10:28.5413117Z (as ‘lib’ is unspecified) 2021-05-16T23:10:42.1824288Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-16T23:10:42.4619947Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-16T23:10:42.4684948Z ================================================== 2021-05-16T23:10:42.4686496Z downloaded 60 KB 2021-05-16T23:10:42.4687450Z 2021-05-16T23:10:42.4722654Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-16T23:10:42.8232556Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-16T23:10:42.8237883Z ================================================== 2021-05-16T23:10:42.8243108Z downloaded 34 KB 2021-05-16T23:10:42.8243682Z 2021-05-16T23:10:42.8284429Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-16T23:10:43.1181317Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-16T23:10:43.1233995Z ================================================== 2021-05-16T23:10:43.1234463Z downloaded 62 KB 2021-05-16T23:10:43.1234733Z 2021-05-16T23:10:43.1267819Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-16T23:10:43.6684400Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-16T23:10:43.6854862Z ================================================== 2021-05-16T23:10:43.6855940Z downloaded 285 KB 2021-05-16T23:10:43.6890553Z 2021-05-16T23:10:43.6892570Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-16T23:10:43.9698046Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-16T23:10:43.9982299Z ================================================== 2021-05-16T23:10:43.9982787Z downloaded 973 KB 2021-05-16T23:10:43.9983053Z 2021-05-16T23:10:44.2282674Z * installing *source* package ‘rprojroot’ ... 2021-05-16T23:10:44.2301102Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-16T23:10:44.2303385Z ** using staged installation 2021-05-16T23:10:44.2422580Z ** R 2021-05-16T23:10:44.2464319Z ** inst 2021-05-16T23:10:44.2472388Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:10:44.7154962Z ** help 2021-05-16T23:10:44.7402347Z *** installing help indices 2021-05-16T23:10:44.7653643Z *** copying figures 2021-05-16T23:10:44.7658761Z ** building package indices 2021-05-16T23:10:44.9597376Z ** installing vignettes 2021-05-16T23:10:44.9645895Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:10:45.1246989Z ** testing if installed package can be loaded from final location 2021-05-16T23:10:45.3006074Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:10:45.3020630Z * DONE (rprojroot) 2021-05-16T23:10:45.5438992Z * installing *source* package ‘crayon’ ... 2021-05-16T23:10:45.5457203Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-16T23:10:45.5458968Z ** using staged installation 2021-05-16T23:10:45.5578791Z ** R 2021-05-16T23:10:45.5667958Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:10:46.3074663Z ** help 2021-05-16T23:10:46.3566702Z *** installing help indices 2021-05-16T23:10:46.3915586Z ** building package indices 2021-05-16T23:10:46.6152263Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:10:46.7957848Z ** testing if installed package can be loaded from final location 2021-05-16T23:10:46.9657382Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:10:46.9666438Z * DONE (crayon) 2021-05-16T23:10:47.1788724Z * installing *source* package ‘R6’ ... 2021-05-16T23:10:47.1804927Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-16T23:10:47.1806887Z ** using staged installation 2021-05-16T23:10:47.1924476Z ** R 2021-05-16T23:10:47.1984789Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:10:47.6354775Z ** help 2021-05-16T23:10:47.6545663Z *** installing help indices 2021-05-16T23:10:47.6751723Z *** copying figures 2021-05-16T23:10:47.6754300Z ** building package indices 2021-05-16T23:10:47.8701369Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:10:48.0515875Z ** testing if installed package can be loaded from final location 2021-05-16T23:10:48.2218868Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:10:48.2226059Z * DONE (R6) 2021-05-16T23:10:48.5174231Z * installing *source* package ‘desc’ ... 2021-05-16T23:10:48.5226288Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-16T23:10:48.5229918Z ** using staged installation 2021-05-16T23:10:48.5367802Z ** R 2021-05-16T23:10:48.5479610Z ** inst 2021-05-16T23:10:48.5492460Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:10:49.9732928Z ** help 2021-05-16T23:10:50.0955247Z *** installing help indices 2021-05-16T23:10:50.1795511Z ** building package indices 2021-05-16T23:10:50.4455516Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:10:50.6243889Z ** testing if installed package can be loaded from final location 2021-05-16T23:10:50.8310383Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:10:50.8334439Z * DONE (desc) 2021-05-16T23:10:51.0752213Z * installing *source* package ‘debugme’ ... 2021-05-16T23:10:51.0788348Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-16T23:10:51.0791452Z ** using staged installation 2021-05-16T23:10:51.0895561Z ** R 2021-05-16T23:10:51.0931666Z ** inst 2021-05-16T23:10:51.0950432Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:10:51.3876529Z ** help 2021-05-16T23:10:51.3983166Z *** installing help indices 2021-05-16T23:10:51.4199177Z ** building package indices 2021-05-16T23:10:51.6344877Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:10:51.8187344Z ** testing if installed package can be loaded from final location 2021-05-16T23:10:52.0082832Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:10:52.0088840Z * DONE (debugme) 2021-05-16T23:10:52.0162012Z 2021-05-16T23:10:52.0164447Z The downloaded source packages are in 2021-05-16T23:10:52.0166090Z ‘/tmp/RtmpIsnzmj/downloaded_packages’ 2021-05-16T23:10:52.0166986Z Running `R CMD build`... 2021-05-16T23:10:52.2528221Z * checking for file ‘/tmp/RtmpIsnzmj/remotes69ce1db58ea7/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-16T23:10:52.2529640Z * preparing ‘sysreqs’: 2021-05-16T23:10:52.2530625Z * checking DESCRIPTION meta-information ... OK 2021-05-16T23:10:52.2531869Z * checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:10:52.2532786Z * checking for empty or unneeded directories 2021-05-16T23:10:52.2533952Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T23:10:52.2534946Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-16T23:10:52.2536931Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:10:52.2538113Z (as ‘lib’ is unspecified) 2021-05-16T23:10:52.4517917Z * installing *source* package ‘sysreqs’ ... 2021-05-16T23:10:52.4520155Z ** using staged installation 2021-05-16T23:10:52.4655272Z ** R 2021-05-16T23:10:52.4690631Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:10:52.8314679Z ** help 2021-05-16T23:10:52.8515609Z *** installing help indices 2021-05-16T23:10:52.8683465Z ** building package indices 2021-05-16T23:10:53.6039820Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:10:53.6041082Z ** testing if installed package can be loaded from final location 2021-05-16T23:10:53.6041986Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:10:53.6042640Z * DONE (sysreqs) 2021-05-16T23:11:10.0288765Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-16T23:11:10.0294322Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-16T23:11:10.0296944Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-16T23:11:10.1319927Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-16T23:11:10.1404244Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-16T23:11:10.1943864Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-16T23:11:10.3179513Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-16T23:11:10.3515227Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-16T23:11:10.5093790Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-16T23:11:11.7480549Z Reading package lists... 2021-05-16T23:11:11.8250269Z Reading package lists... 2021-05-16T23:11:11.9678866Z Building dependency tree... 2021-05-16T23:11:11.9702108Z Reading state information... 2021-05-16T23:11:12.1094691Z libgit2-dev is already the newest version (0.28.4+dfsg.1-2). 2021-05-16T23:11:12.1097491Z libssh2-1-dev is already the newest version (1.8.0-2.1build1). 2021-05-16T23:11:12.1099739Z libssh2-1-dev set to manually installed. 2021-05-16T23:11:12.1102116Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-16T23:11:12.1104647Z zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu1.2). 2021-05-16T23:11:12.1107472Z Suggested packages: 2021-05-16T23:11:12.1109975Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-16T23:11:12.1536901Z The following NEW packages will be installed: 2021-05-16T23:11:12.1542740Z libcurl4-openssl-dev 2021-05-16T23:11:12.1744040Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-16T23:11:12.1745163Z Need to get 321 kB of archives. 2021-05-16T23:11:12.1746180Z After this operation, 1539 kB of additional disk space will be used. 2021-05-16T23:11:12.1749609Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-16T23:11:12.6030478Z Fetched 321 kB in 0s (15.3 MB/s) 2021-05-16T23:11:12.6342688Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-16T23:11:12.6420671Z (Reading database ... 2021-05-16T23:11:12.6421585Z (Reading database ... 5% 2021-05-16T23:11:12.6422615Z (Reading database ... 10% 2021-05-16T23:11:12.6423449Z (Reading database ... 15% 2021-05-16T23:11:12.6423937Z (Reading database ... 20% 2021-05-16T23:11:12.6424382Z (Reading database ... 25% 2021-05-16T23:11:12.6424832Z (Reading database ... 30% 2021-05-16T23:11:12.6425272Z (Reading database ... 35% 2021-05-16T23:11:12.6425713Z (Reading database ... 40% 2021-05-16T23:11:12.6426142Z (Reading database ... 45% 2021-05-16T23:11:12.6426613Z (Reading database ... 50% 2021-05-16T23:11:12.6469612Z (Reading database ... 55% 2021-05-16T23:11:12.6518922Z (Reading database ... 60% 2021-05-16T23:11:12.6562829Z (Reading database ... 65% 2021-05-16T23:11:12.6743865Z (Reading database ... 70% 2021-05-16T23:11:12.6772324Z (Reading database ... 75% 2021-05-16T23:11:12.7030983Z (Reading database ... 80% 2021-05-16T23:11:12.7146487Z (Reading database ... 85% 2021-05-16T23:11:12.7533365Z (Reading database ... 90% 2021-05-16T23:11:12.7621942Z (Reading database ... 95% 2021-05-16T23:11:12.7622972Z (Reading database ... 100% 2021-05-16T23:11:12.7624481Z (Reading database ... 285139 files and directories currently installed.) 2021-05-16T23:11:12.7749278Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-16T23:11:12.7762304Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-16T23:11:12.8727835Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-16T23:11:12.8769962Z Processing triggers for man-db (2.9.1-1) ... 2021-05-16T23:11:18.4027233Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-16T23:11:18.4028082Z remotes::install_github("ropensci/tic") 2021-05-16T23:11:18.4028820Z remotes::install_github("muschellij2/ghtravis") 2021-05-16T23:11:18.4029603Z remotes::install_github("muschellij2/aghast") 2021-05-16T23:11:18.4030259Z remotes::install_cran("covr") 2021-05-16T23:11:18.4039112Z shell: /usr/local/bin/Rscript {0} 2021-05-16T23:11:18.4039500Z env: 2021-05-16T23:11:18.4039935Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:11:18.4040385Z TIC_DEPLOY_KEY: 2021-05-16T23:11:18.4041134Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:11:18.4042617Z GITHUB_PAT: *** 2021-05-16T23:11:18.4042997Z COVERALLS_TOKEN: 2021-05-16T23:11:18.4043435Z continue-on-error: true 2021-05-16T23:11:18.4043897Z VDIFFR_RUN_TESTS: 2021-05-16T23:11:18.4044346Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:11:18.4044814Z TZ: UTC 2021-05-16T23:11:18.4045166Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:11:18.4045550Z NOT_CRAN: true 2021-05-16T23:11:18.4045888Z ##[endgroup] 2021-05-16T23:11:18.5971022Z Using github PAT from envvar GITHUB_PAT 2021-05-16T23:11:19.1572030Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-16T23:11:35.2654522Z rlang (NA -> 0.4.11) [CRAN] 2021-05-16T23:11:35.2657036Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-16T23:11:35.2660639Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-16T23:11:35.2662246Z sys (NA -> 3.4 ) [CRAN] 2021-05-16T23:11:35.2663747Z askpass (NA -> 1.1 ) [CRAN] 2021-05-16T23:11:35.2665267Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-16T23:11:35.2666726Z mime (NA -> 0.10 ) [CRAN] 2021-05-16T23:11:35.2668169Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-16T23:11:35.2669640Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-16T23:11:35.2671097Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-16T23:11:35.2672518Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-16T23:11:35.2674466Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-16T23:11:35.2676026Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-16T23:11:35.2677447Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-16T23:11:35.2678932Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-16T23:11:35.2680505Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-16T23:11:35.2682029Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-16T23:11:35.2683487Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-16T23:11:35.2687644Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-16T23:11:35.2691069Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-16T23:11:35.2694077Z whisker (NA -> 0.4 ) [CRAN] 2021-05-16T23:11:35.2695343Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-16T23:11:35.2696547Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-16T23:11:35.2697779Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-16T23:11:35.2698979Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-16T23:11:35.2700137Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-16T23:11:35.2701263Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-16T23:11:35.2702422Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-16T23:11:35.2703602Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-16T23:11:35.2704813Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-16T23:11:35.2706027Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-16T23:11:35.2707222Z git2r (NA -> 0.28.0) [CRAN] 2021-05-16T23:11:35.2715121Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:11:35.2716772Z (as ‘lib’ is unspecified) 2021-05-16T23:11:49.7896284Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-16T23:11:50.2499361Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-16T23:11:50.3021486Z ================================================== 2021-05-16T23:11:50.3023025Z downloaded 839 KB 2021-05-16T23:11:50.3024310Z 2021-05-16T23:11:50.3074048Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-16T23:11:50.5863261Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-16T23:11:50.6995373Z ================================================== 2021-05-16T23:11:50.6996933Z downloaded 258 KB 2021-05-16T23:11:50.6997894Z 2021-05-16T23:11:50.7044282Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-16T23:11:50.9941187Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-16T23:11:51.0164330Z ================================================== 2021-05-16T23:11:51.0165800Z downloaded 97 KB 2021-05-16T23:11:51.0167912Z 2021-05-16T23:11:51.0209384Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-16T23:11:51.1956984Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-16T23:11:51.1959813Z ================================================== 2021-05-16T23:11:51.1961090Z downloaded 19 KB 2021-05-16T23:11:51.1962013Z 2021-05-16T23:11:51.1986470Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-16T23:11:51.5885384Z Content type 'application/x-tar' length 5688 bytes 2021-05-16T23:11:51.5889715Z ================================================== 2021-05-16T23:11:51.5890732Z downloaded 5688 bytes 2021-05-16T23:11:51.5891380Z 2021-05-16T23:11:51.5947567Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-16T23:11:51.9460499Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-16T23:11:51.9789880Z ================================================== 2021-05-16T23:11:51.9790411Z downloaded 1.3 MB 2021-05-16T23:11:51.9790719Z 2021-05-16T23:11:51.9825750Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-16T23:11:52.3924991Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-16T23:11:52.3929152Z ================================================== 2021-05-16T23:11:52.3930058Z downloaded 12 KB 2021-05-16T23:11:52.3930627Z 2021-05-16T23:11:52.3974896Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-16T23:11:52.9405462Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-16T23:11:52.9659317Z ================================================== 2021-05-16T23:11:52.9660177Z downloaded 779 KB 2021-05-16T23:11:52.9660796Z 2021-05-16T23:11:52.9718368Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-16T23:11:53.3621871Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-16T23:11:53.3961925Z ================================================== 2021-05-16T23:11:53.3963792Z downloaded 412 KB 2021-05-16T23:11:53.3965339Z 2021-05-16T23:11:53.4003061Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-16T23:11:53.6929163Z Content type 'application/x-tar' length 3475 bytes 2021-05-16T23:11:53.6931274Z ================================================== 2021-05-16T23:11:53.6932570Z downloaded 3475 bytes 2021-05-16T23:11:53.6933485Z 2021-05-16T23:11:53.6979152Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-16T23:11:54.0938643Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-16T23:11:54.2039126Z ================================================== 2021-05-16T23:11:54.2040150Z downloaded 156 KB 2021-05-16T23:11:54.2040717Z 2021-05-16T23:11:54.2087867Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-16T23:11:54.6188889Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-16T23:11:54.6241423Z ================================================== 2021-05-16T23:11:54.6242923Z downloaded 60 KB 2021-05-16T23:11:54.6243879Z 2021-05-16T23:11:54.6276244Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-16T23:11:54.9085599Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-16T23:11:55.0189575Z ================================================== 2021-05-16T23:11:55.0191909Z downloaded 154 KB 2021-05-16T23:11:55.0192868Z 2021-05-16T23:11:55.0244754Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-16T23:11:55.3167252Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-16T23:11:55.3270274Z ================================================== 2021-05-16T23:11:55.3271142Z downloaded 110 KB 2021-05-16T23:11:55.3271773Z 2021-05-16T23:11:55.3312808Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-16T23:11:55.7223425Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-16T23:11:55.7273362Z ================================================== 2021-05-16T23:11:55.7275289Z downloaded 107 KB 2021-05-16T23:11:55.7275914Z 2021-05-16T23:11:55.7331265Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-16T23:11:56.0056886Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-16T23:11:56.0235552Z ================================================== 2021-05-16T23:11:56.0236659Z downloaded 225 KB 2021-05-16T23:11:56.0237326Z 2021-05-16T23:11:56.0274916Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-16T23:11:56.2989698Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-16T23:11:56.3040379Z ================================================== 2021-05-16T23:11:56.3041651Z downloaded 43 KB 2021-05-16T23:11:56.3042441Z 2021-05-16T23:11:56.3078767Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-16T23:11:56.7017819Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-16T23:11:56.7061713Z ================================================== 2021-05-16T23:11:56.7062396Z downloaded 90 KB 2021-05-16T23:11:56.7062794Z 2021-05-16T23:11:56.7093166Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-16T23:11:57.3661115Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-16T23:11:57.3709888Z ================================================== 2021-05-16T23:11:57.3712616Z downloaded 92 KB 2021-05-16T23:11:57.3713525Z 2021-05-16T23:11:57.3821521Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-16T23:11:57.8824921Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-16T23:11:57.8828535Z ================================================== 2021-05-16T23:11:57.8828980Z downloaded 28 KB 2021-05-16T23:11:57.8829269Z 2021-05-16T23:11:57.8893611Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-16T23:11:58.2793118Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-16T23:11:58.2795385Z ================================================== 2021-05-16T23:11:58.2796633Z downloaded 12 KB 2021-05-16T23:11:58.2797408Z 2021-05-16T23:11:58.2849638Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-16T23:11:58.5622298Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-16T23:11:58.5899483Z ================================================== 2021-05-16T23:11:58.5902097Z downloaded 364 KB 2021-05-16T23:11:58.5903002Z 2021-05-16T23:11:58.5938314Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-16T23:11:58.8697946Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-16T23:11:58.8761805Z ================================================== 2021-05-16T23:11:58.8762464Z downloaded 81 KB 2021-05-16T23:11:58.8764016Z 2021-05-16T23:11:58.8792216Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-16T23:11:59.1646404Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-16T23:11:59.1696174Z ================================================== 2021-05-16T23:11:59.1696693Z downloaded 44 KB 2021-05-16T23:11:59.1696995Z 2021-05-16T23:11:59.1735310Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-16T23:11:59.4544220Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-16T23:11:59.4599926Z ================================================== 2021-05-16T23:11:59.4600844Z downloaded 64 KB 2021-05-16T23:11:59.4601440Z 2021-05-16T23:11:59.4632309Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-16T23:11:59.7450275Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-16T23:11:59.7695551Z ================================================== 2021-05-16T23:11:59.7696367Z downloaded 781 KB 2021-05-16T23:11:59.7696925Z 2021-05-16T23:11:59.7736117Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-16T23:12:00.0545811Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-16T23:12:00.0549466Z ================================================== 2021-05-16T23:12:00.0551004Z downloaded 20 KB 2021-05-16T23:12:00.0551940Z 2021-05-16T23:12:00.0588963Z trying URL 'https://cloud.r-project.org/src/contrib/cachem_1.0.5.tar.gz' 2021-05-16T23:12:00.1984234Z Content type 'application/x-gzip' length 24974 bytes (24 KB) 2021-05-16T23:12:00.1992001Z ================================================== 2021-05-16T23:12:00.1992941Z downloaded 24 KB 2021-05-16T23:12:00.1993512Z 2021-05-16T23:12:00.2015230Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-16T23:12:00.4914371Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-16T23:12:00.5175981Z ================================================== 2021-05-16T23:12:00.5177511Z downloaded 297 KB 2021-05-16T23:12:00.5179472Z 2021-05-16T23:12:00.5229907Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-16T23:12:00.8107164Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-16T23:12:00.8123440Z ================================================== 2021-05-16T23:12:00.8124328Z downloaded 17 KB 2021-05-16T23:12:00.8124896Z 2021-05-16T23:12:00.8168925Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-16T23:12:01.1287950Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-16T23:12:01.1746465Z ================================================== 2021-05-16T23:12:01.1747023Z downloaded 1.2 MB 2021-05-16T23:12:01.1747325Z 2021-05-16T23:12:01.6648462Z * installing *source* package ‘rlang’ ... 2021-05-16T23:12:01.6784648Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:01.6786097Z ** using staged installation 2021-05-16T23:12:01.6957396Z ** libs 2021-05-16T23:12:01.7297457Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-16T23:12:02.2240664Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-16T23:12:02.6282190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-16T23:12:05.0062487Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-16T23:12:06.0395211Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T23:12:06.0824641Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:06.2571515Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-16T23:12:06.2596087Z ** R 2021-05-16T23:12:06.3033140Z ** inst 2021-05-16T23:12:06.3043107Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:09.5074988Z ** help 2021-05-16T23:12:10.1212190Z *** installing help indices 2021-05-16T23:12:10.3906751Z *** copying figures 2021-05-16T23:12:10.3911517Z ** building package indices 2021-05-16T23:12:10.8606558Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:11.1007946Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:11.2056440Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:11.4485690Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:11.4521110Z * DONE (rlang) 2021-05-16T23:12:11.6903639Z * installing *source* package ‘magrittr’ ... 2021-05-16T23:12:11.6928714Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:11.6930448Z ** using staged installation 2021-05-16T23:12:11.7046284Z ** libs 2021-05-16T23:12:11.7099742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-16T23:12:11.8239199Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:12:11.8723304Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:11.8955721Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-16T23:12:11.8957051Z ** R 2021-05-16T23:12:11.8989931Z ** inst 2021-05-16T23:12:11.9003820Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:12.1914931Z ** help 2021-05-16T23:12:12.2267605Z *** installing help indices 2021-05-16T23:12:12.2528675Z *** copying figures 2021-05-16T23:12:12.2531615Z ** building package indices 2021-05-16T23:12:12.4487759Z ** installing vignettes 2021-05-16T23:12:12.4549310Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:12.6190125Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:12.6352430Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:12.7940647Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:12.7947356Z * DONE (magrittr) 2021-05-16T23:12:13.0257615Z * installing *source* package ‘glue’ ... 2021-05-16T23:12:13.0278128Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:13.0279944Z ** using staged installation 2021-05-16T23:12:13.0432631Z ** libs 2021-05-16T23:12:13.0479123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-16T23:12:13.1788509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:13.2225896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-16T23:12:13.3033524Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:13.3257150Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-16T23:12:13.3269359Z ** R 2021-05-16T23:12:13.3319318Z ** inst 2021-05-16T23:12:13.3329244Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:13.7794841Z ** help 2021-05-16T23:12:13.8055341Z *** installing help indices 2021-05-16T23:12:13.8346308Z *** copying figures 2021-05-16T23:12:13.8350202Z ** building package indices 2021-05-16T23:12:14.0208592Z ** installing vignettes 2021-05-16T23:12:14.0263357Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:14.2365990Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:14.2546321Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:14.4559891Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:14.4566187Z * DONE (glue) 2021-05-16T23:12:14.6561981Z * installing *source* package ‘sys’ ... 2021-05-16T23:12:14.6572418Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:14.6573864Z ** using staged installation 2021-05-16T23:12:14.6740308Z ** libs 2021-05-16T23:12:14.6782875Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-16T23:12:14.9679308Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:15.0131331Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:15.0395610Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-16T23:12:15.0396775Z ** R 2021-05-16T23:12:15.0412031Z ** inst 2021-05-16T23:12:15.0420032Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:15.2963428Z ** help 2021-05-16T23:12:15.3148000Z *** installing help indices 2021-05-16T23:12:15.3335483Z ** building package indices 2021-05-16T23:12:15.5299490Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:15.6953506Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:15.7131540Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:15.8834660Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:15.8841077Z * DONE (sys) 2021-05-16T23:12:16.0811878Z * installing *source* package ‘mime’ ... 2021-05-16T23:12:16.0820600Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:16.0822464Z ** using staged installation 2021-05-16T23:12:16.0950373Z ** libs 2021-05-16T23:12:16.1005864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:16.1442071Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-16T23:12:16.1983758Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:16.2126144Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-16T23:12:16.2140351Z ** R 2021-05-16T23:12:16.2194619Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:16.5449435Z ** help 2021-05-16T23:12:16.5675956Z *** installing help indices 2021-05-16T23:12:16.5826638Z ** building package indices 2021-05-16T23:12:16.7702489Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:16.9392172Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:16.9583557Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:17.1293160Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:17.1306760Z * DONE (mime) 2021-05-16T23:12:17.4603902Z * installing *source* package ‘curl’ ... 2021-05-16T23:12:17.4683676Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:17.4687395Z ** using staged installation 2021-05-16T23:12:17.4828442Z Found pkg-config cflags and libs! 2021-05-16T23:12:17.5708805Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-16T23:12:17.5709891Z Using PKG_LIBS=-lcurl 2021-05-16T23:12:17.6209022Z ** libs 2021-05-16T23:12:17.6262019Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-16T23:12:17.6283836Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-16T23:12:17.6973216Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-16T23:12:17.8125852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-16T23:12:17.8986242Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-16T23:12:17.9478511Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-16T23:12:18.0502312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-16T23:12:18.1215702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-16T23:12:18.1793283Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-16T23:12:18.5270913Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-16T23:12:18.5655330Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:18.6215754Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-16T23:12:18.6874192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-16T23:12:18.8451462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-16T23:12:18.9053959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-16T23:12:18.9595151Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-16T23:12:19.0005204Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-16T23:12:19.0443244Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-16T23:12:19.1036335Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:12:19.2224107Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T23:12:19.2892233Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-16T23:12:19.3070153Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-16T23:12:19.3551655Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:19.3875787Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-16T23:12:19.3878248Z ** R 2021-05-16T23:12:19.4009006Z ** inst 2021-05-16T23:12:19.4039115Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:19.8845655Z ** help 2021-05-16T23:12:19.9313272Z *** installing help indices 2021-05-16T23:12:19.9631035Z ** building package indices 2021-05-16T23:12:20.1645287Z ** installing vignettes 2021-05-16T23:12:20.1719424Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:20.3545321Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:20.3710796Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:20.5531727Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:20.5539345Z * DONE (curl) 2021-05-16T23:12:20.8502705Z * installing *source* package ‘jsonlite’ ... 2021-05-16T23:12:20.8554220Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:20.8555292Z ** using staged installation 2021-05-16T23:12:20.8667378Z ** libs 2021-05-16T23:12:20.8716620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T23:12:20.9392281Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-16T23:12:20.9992758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-16T23:12:21.0695397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-16T23:12:21.1845736Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-16T23:12:21.2631845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-16T23:12:21.3127166Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-16T23:12:21.3657408Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-16T23:12:21.4252455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-16T23:12:21.4789004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-16T23:12:21.6056986Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-16T23:12:21.6774072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-16T23:12:21.7619962Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-16T23:12:21.8319827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-16T23:12:21.8927234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-16T23:12:21.9535587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-16T23:12:22.0129692Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-16T23:12:22.0591776Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-16T23:12:22.1214264Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-16T23:12:22.1694329Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-16T23:12:22.2155029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-16T23:12:22.2772318Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-16T23:12:22.3050674Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-16T23:12:22.3496485Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-16T23:12:22.4421040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-16T23:12:22.6834358Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-16T23:12:22.9347485Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-16T23:12:23.1113573Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-16T23:12:23.2459522Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-16T23:12:23.2631259Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:23.2948527Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-16T23:12:23.2967174Z ** R 2021-05-16T23:12:23.3144573Z ** inst 2021-05-16T23:12:23.3162222Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:24.2549895Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-16T23:12:24.2551851Z ** help 2021-05-16T23:12:24.2857072Z *** installing help indices 2021-05-16T23:12:24.3106861Z ** building package indices 2021-05-16T23:12:24.4926788Z ** installing vignettes 2021-05-16T23:12:24.4998628Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:24.6869516Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:24.7085270Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:24.9023736Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:24.9036155Z * DONE (jsonlite) 2021-05-16T23:12:25.1047262Z * installing *source* package ‘ini’ ... 2021-05-16T23:12:25.1054464Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:25.1056317Z ** using staged installation 2021-05-16T23:12:25.1158986Z ** R 2021-05-16T23:12:25.1184393Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:25.3554646Z ** help 2021-05-16T23:12:25.3652657Z *** installing help indices 2021-05-16T23:12:25.3867445Z ** building package indices 2021-05-16T23:12:25.5798118Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:25.7578884Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:25.9257922Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:25.9267187Z * DONE (ini) 2021-05-16T23:12:26.1627609Z * installing *source* package ‘gitcreds’ ... 2021-05-16T23:12:26.1646525Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:26.1648658Z ** using staged installation 2021-05-16T23:12:26.1748801Z ** R 2021-05-16T23:12:26.1808671Z ** inst 2021-05-16T23:12:26.1816681Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:26.6602777Z ** help 2021-05-16T23:12:26.6855681Z *** installing help indices 2021-05-16T23:12:26.7077943Z ** building package indices 2021-05-16T23:12:26.8994858Z ** installing vignettes 2021-05-16T23:12:26.9000850Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:27.0762799Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:27.2452050Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:27.2464951Z * DONE (gitcreds) 2021-05-16T23:12:27.4913660Z * installing *source* package ‘zip’ ... 2021-05-16T23:12:27.4940661Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:27.4942788Z ** using staged installation 2021-05-16T23:12:27.5032912Z ** libs 2021-05-16T23:12:27.5079418Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-16T23:12:30.2581925Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-16T23:12:32.8736385Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:32.9199291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-16T23:12:35.2338224Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-16T23:12:35.3235415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-16T23:12:35.4506936Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-16T23:12:35.5153147Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:35.5393765Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-16T23:12:35.5451193Z ** R 2021-05-16T23:12:35.5493833Z ** inst 2021-05-16T23:12:35.5503933Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:35.8667254Z ** help 2021-05-16T23:12:35.8886747Z *** installing help indices 2021-05-16T23:12:35.9134832Z ** building package indices 2021-05-16T23:12:36.1211373Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:36.3298510Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:36.3464073Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:36.5284665Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:36.5290953Z * DONE (zip) 2021-05-16T23:12:36.8055139Z * installing *source* package ‘rstudioapi’ ... 2021-05-16T23:12:36.8094264Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:36.8096363Z ** using staged installation 2021-05-16T23:12:36.8215163Z ** R 2021-05-16T23:12:36.8313353Z ** inst 2021-05-16T23:12:36.8330375Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:37.3338146Z ** help 2021-05-16T23:12:37.4988227Z *** installing help indices 2021-05-16T23:12:37.6098111Z *** copying figures 2021-05-16T23:12:37.6099285Z ** building package indices 2021-05-16T23:12:37.8783454Z ** installing vignettes 2021-05-16T23:12:37.8860217Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:38.0671685Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:38.2364082Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:38.2381168Z * DONE (rstudioapi) 2021-05-16T23:12:38.4595965Z * installing *source* package ‘fastmap’ ... 2021-05-16T23:12:38.4614384Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:38.4615347Z ** using staged installation 2021-05-16T23:12:38.4767948Z ** libs 2021-05-16T23:12:38.4824318Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-16T23:12:41.8653748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:41.9076653Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:41.9766341Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-16T23:12:41.9784702Z ** R 2021-05-16T23:12:41.9836071Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:42.3968696Z ** help 2021-05-16T23:12:42.4150541Z *** installing help indices 2021-05-16T23:12:42.4344784Z ** building package indices 2021-05-16T23:12:42.6140464Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:42.7985441Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:42.8193659Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:43.0062298Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:43.0072107Z * DONE (fastmap) 2021-05-16T23:12:43.2534353Z * installing *source* package ‘yaml’ ... 2021-05-16T23:12:43.2562129Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:43.2564142Z ** using staged installation 2021-05-16T23:12:43.2655497Z ** libs 2021-05-16T23:12:43.2711101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-16T23:12:43.6325909Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-16T23:12:43.7374411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-16T23:12:44.6065832Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-16T23:12:44.7673556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-16T23:12:44.8855331Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-16T23:12:45.2331037Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-16T23:12:45.5525970Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-16T23:12:45.6634853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-16T23:12:46.1007665Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-16T23:12:46.2109670Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-16T23:12:47.5518574Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-16T23:12:47.6205113Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:47.6556853Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-16T23:12:47.6558214Z ** R 2021-05-16T23:12:47.6589253Z ** inst 2021-05-16T23:12:47.6603416Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:47.9116030Z ** help 2021-05-16T23:12:47.9323144Z *** installing help indices 2021-05-16T23:12:47.9568865Z ** building package indices 2021-05-16T23:12:48.1668503Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:48.3601480Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:48.3795657Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:48.5650911Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:48.5658320Z * DONE (yaml) 2021-05-16T23:12:48.8257654Z * installing *source* package ‘withr’ ... 2021-05-16T23:12:48.8281970Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:48.8284089Z ** using staged installation 2021-05-16T23:12:48.8426972Z ** R 2021-05-16T23:12:48.8508347Z ** inst 2021-05-16T23:12:48.8516934Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:49.4690308Z ** help 2021-05-16T23:12:49.5495464Z *** installing help indices 2021-05-16T23:12:49.6061414Z *** copying figures 2021-05-16T23:12:49.6062506Z ** building package indices 2021-05-16T23:12:49.8340193Z ** installing vignettes 2021-05-16T23:12:49.8403946Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:50.0283015Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:50.2085686Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:50.2093793Z * DONE (withr) 2021-05-16T23:12:50.4399105Z * installing *source* package ‘whisker’ ... 2021-05-16T23:12:50.4420054Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:50.4422981Z ** using staged installation 2021-05-16T23:12:50.4522181Z ** R 2021-05-16T23:12:50.4568172Z ** inst 2021-05-16T23:12:50.4586595Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:50.8394780Z ** help 2021-05-16T23:12:50.8571225Z *** installing help indices 2021-05-16T23:12:50.8786734Z ** building package indices 2021-05-16T23:12:51.0737290Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:51.2516202Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:51.4346594Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:51.4356265Z * DONE (whisker) 2021-05-16T23:12:51.6599137Z * installing *source* package ‘rappdirs’ ... 2021-05-16T23:12:51.6610361Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:51.6614377Z ** using staged installation 2021-05-16T23:12:51.6861740Z ** libs 2021-05-16T23:12:51.6922086Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:12:51.7367940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-16T23:12:51.7821352Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:12:51.7972961Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-16T23:12:51.7984748Z ** R 2021-05-16T23:12:51.8026723Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:12:52.0952859Z ** help 2021-05-16T23:12:52.1181420Z *** installing help indices 2021-05-16T23:12:52.1385871Z ** building package indices 2021-05-16T23:12:52.3301213Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:12:52.5027431Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:12:52.5213499Z ** testing if installed package can be loaded from final location 2021-05-16T23:12:52.7009194Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:12:52.7015779Z * DONE (rappdirs) 2021-05-16T23:12:53.1867848Z * installing *source* package ‘fs’ ... 2021-05-16T23:12:53.2014863Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-16T23:12:53.2016137Z ** using staged installation 2021-05-16T23:12:53.2167365Z ** libs 2021-05-16T23:12:53.2238767Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-16T23:12:53.8505571Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-16T23:12:54.2645733Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-16T23:12:54.6717057Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-16T23:12:54.7579292Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-16T23:12:55.0719425Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-16T23:12:55.3743676Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-16T23:12:55.4736540Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-16T23:12:55.9041750Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-16T23:12:56.2058458Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-16T23:12:56.3064275Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-16T23:12:56.6430041Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-16T23:12:56.7858112Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-16T23:12:56.8327473Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-16T23:12:56.8839079Z (cd libuv-1.38.1 \ 2021-05-16T23:12:56.8841003Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-16T23:13:01.8886464Z make --directory=libuv-1.38.1 \ 2021-05-16T23:13:01.8887536Z HAVE_DTRACE=0 2021-05-16T23:13:01.8990477Z make[1]: Entering directory '/tmp/Rtmp2d1gA0/R.INSTALL79494e163906/fs/src/libuv-1.38.1' 2021-05-16T23:13:01.9093088Z CC src/libuv_la-fs-poll.lo 2021-05-16T23:13:02.5792590Z CC src/libuv_la-idna.lo 2021-05-16T23:13:03.3304324Z CC src/libuv_la-inet.lo 2021-05-16T23:13:04.0210954Z CC src/libuv_la-random.lo 2021-05-16T23:13:04.5348923Z CC src/libuv_la-strscpy.lo 2021-05-16T23:13:05.0987529Z CC src/libuv_la-threadpool.lo 2021-05-16T23:13:05.7969727Z CC src/libuv_la-timer.lo 2021-05-16T23:13:06.4553100Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-16T23:13:06.9685938Z CC src/libuv_la-uv-common.lo 2021-05-16T23:13:08.0943729Z CC src/libuv_la-version.lo 2021-05-16T23:13:08.6280015Z CC src/unix/libuv_la-async.lo 2021-05-16T23:13:09.2347260Z CC src/unix/libuv_la-core.lo 2021-05-16T23:13:10.4005010Z CC src/unix/libuv_la-dl.lo 2021-05-16T23:13:11.0184926Z CC src/unix/libuv_la-fs.lo 2021-05-16T23:13:12.7317995Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-16T23:13:13.3929876Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-16T23:13:14.0100150Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-16T23:13:14.6612172Z CC src/unix/libuv_la-loop.lo 2021-05-16T23:13:15.2810581Z CC src/unix/libuv_la-pipe.lo 2021-05-16T23:13:15.9684208Z CC src/unix/libuv_la-poll.lo 2021-05-16T23:13:16.5052945Z CC src/unix/libuv_la-process.lo 2021-05-16T23:13:17.2704826Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-16T23:13:17.7837266Z CC src/unix/libuv_la-signal.lo 2021-05-16T23:13:18.6964346Z CC src/unix/libuv_la-stream.lo 2021-05-16T23:13:19.7601991Z CC src/unix/libuv_la-tcp.lo 2021-05-16T23:13:20.4673285Z CC src/unix/libuv_la-thread.lo 2021-05-16T23:13:21.2573536Z CC src/unix/libuv_la-tty.lo 2021-05-16T23:13:21.9116056Z CC src/unix/libuv_la-udp.lo 2021-05-16T23:13:23.6505040Z CC src/unix/libuv_la-linux-core.lo 2021-05-16T23:13:24.1678606Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-16T23:13:25.0309015Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-16T23:13:25.5301927Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-16T23:13:26.0659710Z CC src/unix/libuv_la-proctitle.lo 2021-05-16T23:13:26.6220452Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-16T23:13:27.1302090Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-16T23:13:27.6660823Z CCLD libuv.la 2021-05-16T23:13:27.8656733Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-16T23:13:27.9067955Z make[1]: Leaving directory '/tmp/Rtmp2d1gA0/R.INSTALL79494e163906/fs/src/libuv-1.38.1' 2021-05-16T23:13:27.9088453Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:13:27.9997585Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-16T23:13:28.0003705Z ** R 2021-05-16T23:13:28.0108148Z ** inst 2021-05-16T23:13:28.0118784Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:28.9301434Z ** help 2021-05-16T23:13:29.0006087Z *** installing help indices 2021-05-16T23:13:29.0452755Z ** building package indices 2021-05-16T23:13:29.2674681Z ** installing vignettes 2021-05-16T23:13:29.2763951Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:29.5018647Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:13:29.5209654Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:29.7584726Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:29.7597198Z * DONE (fs) 2021-05-16T23:13:29.9785157Z * installing *source* package ‘clipr’ ... 2021-05-16T23:13:29.9797778Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:29.9799531Z ** using staged installation 2021-05-16T23:13:29.9992193Z ** R 2021-05-16T23:13:30.0035382Z ** inst 2021-05-16T23:13:30.0047101Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:30.3194632Z ** help 2021-05-16T23:13:30.3402521Z *** installing help indices 2021-05-16T23:13:30.3613128Z ** building package indices 2021-05-16T23:13:30.5481878Z ** installing vignettes 2021-05-16T23:13:30.5529590Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:30.7213309Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:30.8995009Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:30.9000833Z * DONE (clipr) 2021-05-16T23:13:31.6364251Z * installing *source* package ‘git2r’ ... 2021-05-16T23:13:31.6638980Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:31.6640410Z ** using staged installation 2021-05-16T23:13:31.8498059Z checking build system type... x86_64-unknown-linux-gnu 2021-05-16T23:13:31.8500543Z checking host system type... x86_64-unknown-linux-gnu 2021-05-16T23:13:31.8518329Z checking for gcc... gcc 2021-05-16T23:13:31.9122466Z checking whether the C compiler works... yes 2021-05-16T23:13:31.9123882Z checking for C compiler default output file name... a.out 2021-05-16T23:13:31.9499816Z checking for suffix of executables... 2021-05-16T23:13:31.9896780Z checking whether we are cross compiling... no 2021-05-16T23:13:32.0116585Z checking for suffix of object files... o 2021-05-16T23:13:32.0311389Z checking whether we are using the GNU C compiler... yes 2021-05-16T23:13:32.0509008Z checking whether gcc accepts -g... yes 2021-05-16T23:13:32.0883378Z checking for gcc option to accept ISO C89... none needed 2021-05-16T23:13:32.0891629Z checking for pkg-config... /usr/bin/pkg-config 2021-05-16T23:13:32.0905759Z checking pkg-config is at least version 0.9.0... yes 2021-05-16T23:13:32.1036046Z Found pkg-config cflags and libs! 2021-05-16T23:13:32.1955096Z checking whether the libgit2 version will work in git2r... yes 2021-05-16T23:13:32.3051791Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-16T23:13:32.4172880Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-16T23:13:32.5341421Z checking whether the libgit2 function git_error_last is available... yes 2021-05-16T23:13:32.6395923Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-16T23:13:32.6399806Z ----- Results of the git2r package configure ----- 2021-05-16T23:13:32.6401080Z 2021-05-16T23:13:32.6403208Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-16T23:13:32.6405053Z PKG_LIBS: -lgit2 2021-05-16T23:13:32.6405925Z 2021-05-16T23:13:32.6407508Z -------------------------------------------------- 2021-05-16T23:13:32.6601482Z configure: creating ./config.status 2021-05-16T23:13:32.7372825Z config.status: creating src/Makevars 2021-05-16T23:13:32.7920276Z ** libs 2021-05-16T23:13:32.7979310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-16T23:13:32.8629017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-16T23:13:32.9157529Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-16T23:13:33.0764345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-16T23:13:33.1710862Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-16T23:13:33.2858046Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-16T23:13:33.5188576Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-16T23:13:33.6167638Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-16T23:13:33.7080578Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-16T23:13:33.8559017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-16T23:13:34.0166537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-16T23:13:34.1159583Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-16T23:13:34.3611695Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-16T23:13:34.4191762Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-16T23:13:34.4971159Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-16T23:13:34.5760662Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-16T23:13:34.6518060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-16T23:13:34.8297036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-16T23:13:34.9500193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-16T23:13:35.0338890Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-16T23:13:35.1889397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-16T23:13:35.2549672Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-16T23:13:35.3374360Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-16T23:13:35.4232257Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-16T23:13:35.5027942Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-16T23:13:35.6571768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-16T23:13:35.8093932Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-16T23:13:35.8862021Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-16T23:13:35.9575444Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-16T23:13:36.1335970Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-16T23:13:36.2129246Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-16T23:13:36.3310506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-16T23:13:36.4895516Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-16T23:13:36.6200441Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-16T23:13:36.6878834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-16T23:13:36.8019702Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:13:36.8436916Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-16T23:13:36.8440766Z ** R 2021-05-16T23:13:36.8639099Z ** inst 2021-05-16T23:13:36.8649384Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:37.7174835Z ** help 2021-05-16T23:13:37.9502595Z *** installing help indices 2021-05-16T23:13:38.1127589Z ** building package indices 2021-05-16T23:13:38.4235100Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:38.6226416Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:13:38.6400502Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:38.8287247Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:38.8300442Z * DONE (git2r) 2021-05-16T23:13:39.0378888Z * installing *source* package ‘askpass’ ... 2021-05-16T23:13:39.0387186Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:39.0388532Z ** using staged installation 2021-05-16T23:13:39.0519008Z ** libs 2021-05-16T23:13:39.0578557Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-16T23:13:39.1166180Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:13:39.1387353Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-16T23:13:39.1402740Z ** R 2021-05-16T23:13:39.1434140Z ** inst 2021-05-16T23:13:39.1442920Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:39.4007472Z ** help 2021-05-16T23:13:39.4183209Z *** installing help indices 2021-05-16T23:13:39.4328335Z ** building package indices 2021-05-16T23:13:39.6251814Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:39.7982720Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:13:39.8174911Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:39.9985584Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:39.9990615Z * DONE (askpass) 2021-05-16T23:13:40.3345927Z * installing *source* package ‘cli’ ... 2021-05-16T23:13:40.3397277Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:40.3399296Z ** using staged installation 2021-05-16T23:13:40.3565932Z ** R 2021-05-16T23:13:40.3811897Z ** inst 2021-05-16T23:13:40.3824720Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:42.5500520Z ** help 2021-05-16T23:13:42.7224668Z *** installing help indices 2021-05-16T23:13:42.8315980Z *** copying figures 2021-05-16T23:13:42.8319979Z ** building package indices 2021-05-16T23:13:43.1268583Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:43.3321409Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:43.5841252Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:43.5867400Z * DONE (cli) 2021-05-16T23:13:43.8836189Z * installing *source* package ‘purrr’ ... 2021-05-16T23:13:43.8883838Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:43.8885085Z ** using staged installation 2021-05-16T23:13:43.9008709Z ** libs 2021-05-16T23:13:43.9062620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-16T23:13:43.9412258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-16T23:13:44.0316112Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-16T23:13:44.1191620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-16T23:13:44.2204785Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:13:44.2630736Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-16T23:13:44.3779620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-16T23:13:44.5081430Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-16T23:13:44.5873343Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:13:44.6336374Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:13:44.6595554Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-16T23:13:44.6604391Z ** R 2021-05-16T23:13:44.6773984Z ** inst 2021-05-16T23:13:44.6782899Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:45.7864629Z ** help 2021-05-16T23:13:45.9508001Z *** installing help indices 2021-05-16T23:13:46.0411930Z *** copying figures 2021-05-16T23:13:46.0416618Z ** building package indices 2021-05-16T23:13:46.3074611Z ** installing vignettes 2021-05-16T23:13:46.3137536Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:46.5003937Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:13:46.5184029Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:46.7162367Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:46.7177230Z * DONE (purrr) 2021-05-16T23:13:46.9699837Z * installing *source* package ‘lifecycle’ ... 2021-05-16T23:13:46.9725032Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:46.9726411Z ** using staged installation 2021-05-16T23:13:46.9867831Z ** R 2021-05-16T23:13:46.9917293Z ** inst 2021-05-16T23:13:46.9929661Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:47.3914753Z ** help 2021-05-16T23:13:47.4195992Z *** installing help indices 2021-05-16T23:13:47.4433669Z *** copying figures 2021-05-16T23:13:47.4438791Z ** building package indices 2021-05-16T23:13:47.6271259Z ** installing vignettes 2021-05-16T23:13:47.6272558Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:47.8058639Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:47.9950177Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:47.9958612Z * DONE (lifecycle) 2021-05-16T23:13:48.2098156Z * installing *source* package ‘cachem’ ... 2021-05-16T23:13:48.2111897Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:48.2114010Z ** using staged installation 2021-05-16T23:13:48.2237055Z ** libs 2021-05-16T23:13:48.2281412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-16T23:13:48.2760921Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:13:48.3231929Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:13:48.3450521Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-16T23:13:48.3463688Z ** R 2021-05-16T23:13:48.3580672Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:48.8429038Z ** help 2021-05-16T23:13:48.8643563Z *** installing help indices 2021-05-16T23:13:48.8826570Z ** building package indices 2021-05-16T23:13:49.0780556Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:49.2660044Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:13:49.2840283Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:49.4828763Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:49.4835060Z * DONE (cachem) 2021-05-16T23:13:49.8844317Z * installing *source* package ‘openssl’ ... 2021-05-16T23:13:49.8952683Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:49.8953776Z ** using staged installation 2021-05-16T23:13:49.9084909Z Found pkg-config cflags and libs! 2021-05-16T23:13:49.9939672Z Using PKG_CFLAGS= 2021-05-16T23:13:50.3080155Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-16T23:13:50.3231673Z ** libs 2021-05-16T23:13:50.3284414Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-16T23:13:50.3308642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-16T23:13:50.4173788Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T23:13:50.4964573Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-16T23:13:50.5983306Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-16T23:13:50.7434695Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-16T23:13:50.8077158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-16T23:13:50.8992906Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-16T23:13:51.0120807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-16T23:13:51.0665096Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-16T23:13:51.1672140Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-16T23:13:51.2296455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-16T23:13:51.3265352Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-16T23:13:51.4651899Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-16T23:13:51.5495775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-16T23:13:51.7288501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-16T23:13:51.7829673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-16T23:13:51.8345307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-16T23:13:51.9672847Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-16T23:13:52.1097900Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-16T23:13:52.2397369Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-16T23:13:52.2882447Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-16T23:13:52.3881372Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-16T23:13:52.5104582Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-16T23:13:52.6434772Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-16T23:13:52.7530584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-16T23:13:52.8709804Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-16T23:13:52.9890070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-16T23:13:53.0568245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-16T23:13:53.2299763Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-16T23:13:53.2381723Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:13:53.2988327Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-16T23:13:53.2989113Z ** R 2021-05-16T23:13:53.3077118Z ** inst 2021-05-16T23:13:53.3124994Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:54.1688388Z ** help 2021-05-16T23:13:54.2191793Z *** installing help indices 2021-05-16T23:13:54.2560843Z ** building package indices 2021-05-16T23:13:54.4659068Z ** installing vignettes 2021-05-16T23:13:54.4810107Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:54.6633147Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:13:54.6809093Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:54.8708400Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:54.8731167Z * DONE (openssl) 2021-05-16T23:13:55.0830149Z * installing *source* package ‘memoise’ ... 2021-05-16T23:13:55.0843808Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:55.0845510Z ** using staged installation 2021-05-16T23:13:55.0987113Z ** R 2021-05-16T23:13:55.1082522Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:55.4915465Z ** help 2021-05-16T23:13:55.5128791Z *** installing help indices 2021-05-16T23:13:55.5354721Z ** building package indices 2021-05-16T23:13:55.7353086Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:55.9272568Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:56.1227340Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:56.1238952Z * DONE (memoise) 2021-05-16T23:13:56.4118142Z * installing *source* package ‘httr’ ... 2021-05-16T23:13:56.4160873Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-16T23:13:56.4168129Z ** using staged installation 2021-05-16T23:13:56.4288178Z ** R 2021-05-16T23:13:56.4438076Z ** demo 2021-05-16T23:13:56.4446976Z ** inst 2021-05-16T23:13:56.4457975Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:13:58.7581697Z ** help 2021-05-16T23:13:58.9279679Z *** installing help indices 2021-05-16T23:13:59.0391463Z ** building package indices 2021-05-16T23:13:59.3404398Z ** installing vignettes 2021-05-16T23:13:59.3476766Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:13:59.5367953Z ** testing if installed package can be loaded from final location 2021-05-16T23:13:59.7667430Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:13:59.7698164Z * DONE (httr) 2021-05-16T23:14:00.0025961Z * installing *source* package ‘credentials’ ... 2021-05-16T23:14:00.0045628Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:00.0047815Z ** using staged installation 2021-05-16T23:14:00.0194230Z ** R 2021-05-16T23:14:00.0243652Z ** inst 2021-05-16T23:14:00.0255281Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:00.4186460Z ** help 2021-05-16T23:14:00.4384498Z *** installing help indices 2021-05-16T23:14:00.4624419Z ** building package indices 2021-05-16T23:14:00.6394987Z ** installing vignettes 2021-05-16T23:14:00.6443479Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:00.9432392Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:01.1791050Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:01.1798965Z * DONE (credentials) 2021-05-16T23:14:01.4001149Z * installing *source* package ‘gh’ ... 2021-05-16T23:14:01.4044516Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:01.4048517Z ** using staged installation 2021-05-16T23:14:01.4156094Z ** R 2021-05-16T23:14:01.4239507Z ** inst 2021-05-16T23:14:01.4248842Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:02.4119135Z ** help 2021-05-16T23:14:02.4379463Z *** installing help indices 2021-05-16T23:14:02.4646093Z ** building package indices 2021-05-16T23:14:02.6595248Z ** installing vignettes 2021-05-16T23:14:02.6653077Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:02.9265593Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:03.2022275Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:03.2040913Z * DONE (gh) 2021-05-16T23:14:03.4518897Z * installing *source* package ‘gert’ ... 2021-05-16T23:14:03.4548948Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:03.4552014Z ** using staged installation 2021-05-16T23:14:03.4646531Z Found pkg-config cflags and libs! 2021-05-16T23:14:03.5461964Z Using PKG_CFLAGS= 2021-05-16T23:14:03.5463063Z Using PKG_LIBS=-lgit2 2021-05-16T23:14:03.5800120Z Configuration OK! 2021-05-16T23:14:03.5964203Z ** libs 2021-05-16T23:14:03.6013513Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-16T23:14:03.6035977Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-16T23:14:03.7911759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-16T23:14:04.0042548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-16T23:14:04.2379953Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-16T23:14:04.3229294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-16T23:14:04.3987475Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-16T23:14:04.5541347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:14:04.6159089Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-16T23:14:04.7161859Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-16T23:14:04.8253806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-16T23:14:04.9248312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-16T23:14:05.0460546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-16T23:14:05.1413546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:14:05.2734865Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T23:14:05.3526989Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:14:05.3861256Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-16T23:14:05.3880937Z ** R 2021-05-16T23:14:05.3978028Z ** inst 2021-05-16T23:14:05.3999477Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:06.1850167Z ** help 2021-05-16T23:14:06.2510194Z *** installing help indices 2021-05-16T23:14:06.2987723Z ** building package indices 2021-05-16T23:14:06.5408269Z ** installing vignettes 2021-05-16T23:14:06.5506087Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:06.8017355Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:14:06.8214147Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:07.0793183Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:07.0803702Z * DONE (gert) 2021-05-16T23:14:07.5315536Z * installing *source* package ‘usethis’ ... 2021-05-16T23:14:07.5403208Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:07.5405242Z ** using staged installation 2021-05-16T23:14:07.5674988Z ** R 2021-05-16T23:14:07.6042501Z ** inst 2021-05-16T23:14:07.6076560Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:10.2114716Z ** help 2021-05-16T23:14:10.4133081Z *** installing help indices 2021-05-16T23:14:10.5312578Z *** copying figures 2021-05-16T23:14:10.5317846Z ** building package indices 2021-05-16T23:14:10.8408770Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:11.1237971Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:11.4656193Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:11.4689039Z * DONE (usethis) 2021-05-16T23:14:11.4803168Z 2021-05-16T23:14:11.4803952Z The downloaded source packages are in 2021-05-16T23:14:11.4805246Z ‘/tmp/RtmpqebVZ0/downloaded_packages’ 2021-05-16T23:14:11.4805866Z Running `R CMD build`... 2021-05-16T23:14:13.7709139Z * checking for file ‘/tmp/RtmpqebVZ0/remotes7316315e0a29/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-16T23:14:13.7710732Z * preparing ‘tic’: 2021-05-16T23:14:13.7711826Z * checking DESCRIPTION meta-information ... OK 2021-05-16T23:14:13.7712889Z * installing the package to process help pages 2021-05-16T23:14:13.7714324Z * checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:14:13.7715390Z * checking for empty or unneeded directories 2021-05-16T23:14:13.7716532Z Removed empty directory ‘tic/.circleci’ 2021-05-16T23:14:13.7717430Z Removed empty directory ‘tic/pkgdown’ 2021-05-16T23:14:13.7718259Z * building ‘tic_0.10.0.tar.gz’ 2021-05-16T23:14:13.7720126Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:14:13.7721069Z (as ‘lib’ is unspecified) 2021-05-16T23:14:14.1266021Z * installing *source* package ‘tic’ ... 2021-05-16T23:14:14.1290541Z ** using staged installation 2021-05-16T23:14:14.1537510Z ** R 2021-05-16T23:14:14.1739026Z ** inst 2021-05-16T23:14:14.1768719Z ** preparing package for lazy loading 2021-05-16T23:14:14.5666581Z ** help 2021-05-16T23:14:14.7253646Z *** installing help indices 2021-05-16T23:14:14.8143478Z *** copying figures 2021-05-16T23:14:14.8148120Z ** building package indices 2021-05-16T23:14:15.0782495Z ** installing vignettes 2021-05-16T23:14:15.0832740Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:15.3636521Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:15.7097547Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:15.7130278Z * DONE (tic) 2021-05-16T23:14:15.7261009Z Using github PAT from envvar GITHUB_PAT 2021-05-16T23:14:15.9082328Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-16T23:14:16.9270441Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-16T23:14:16.9277789Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-16T23:14:16.9281678Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-16T23:14:16.9283337Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-16T23:14:16.9285109Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:14:16.9286655Z (as ‘lib’ is unspecified) 2021-05-16T23:14:16.9290608Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-16T23:14:16.9292362Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-16T23:14:16.9294067Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-16T23:14:16.9295811Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-16T23:14:16.9297480Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-16T23:14:16.9299149Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-16T23:14:16.9300794Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-16T23:14:16.9302430Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-16T23:14:16.9304095Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-16T23:14:16.9307174Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-16T23:14:16.9308498Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-16T23:14:16.9309805Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-16T23:14:16.9311150Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-16T23:14:16.9312463Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-16T23:14:16.9313710Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-16T23:14:16.9314723Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-16T23:14:16.9315370Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-16T23:14:16.9316029Z xfun (NA -> 0.23 ) [CRAN] 2021-05-16T23:14:16.9316685Z markdown (NA -> 1.1 ) [CRAN] 2021-05-16T23:14:16.9317374Z highr (NA -> 0.9 ) [CRAN] 2021-05-16T23:14:16.9318040Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-16T23:14:16.9319259Z stringi (NA -> 1.6.1 ) [CRAN] 2021-05-16T23:14:16.9320832Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-16T23:14:16.9321550Z knitr (NA -> 1.33 ) [CRAN] 2021-05-16T23:14:16.9322296Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-16T23:14:16.9323028Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-16T23:14:16.9323744Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-16T23:14:16.9324479Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-16T23:14:16.9325281Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-16T23:14:16.9326040Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-16T23:14:16.9326794Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-16T23:14:16.9327818Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-16T23:14:16.9328589Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-16T23:14:16.9329351Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-16T23:14:16.9330091Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-16T23:14:31.6837039Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-16T23:14:31.9747326Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-16T23:14:31.9906495Z ================================================== 2021-05-16T23:14:31.9907773Z downloaded 232 KB 2021-05-16T23:14:31.9908617Z 2021-05-16T23:14:31.9940068Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-16T23:14:32.3855501Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-16T23:14:32.4424108Z ================================================== 2021-05-16T23:14:32.4425090Z downloaded 766 KB 2021-05-16T23:14:32.4425568Z 2021-05-16T23:14:32.4460611Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-16T23:14:32.8388112Z Content type 'application/x-tar' length 6108 bytes 2021-05-16T23:14:32.8390401Z ================================================== 2021-05-16T23:14:32.8391695Z downloaded 6108 bytes 2021-05-16T23:14:32.8392634Z 2021-05-16T23:14:32.8438182Z trying URL 'https://cloud.r-project.org/src/contrib/pillar_1.6.1.tar.gz' 2021-05-16T23:14:32.9791445Z Content type 'application/x-gzip' length 1111747 bytes (1.1 MB) 2021-05-16T23:14:33.0046540Z ================================================== 2021-05-16T23:14:33.0047127Z downloaded 1.1 MB 2021-05-16T23:14:33.0047434Z 2021-05-16T23:14:33.0076292Z trying URL 'https://cloud.r-project.org/src/contrib/tibble_3.1.2.tar.gz' 2021-05-16T23:14:33.0429204Z Content type 'application/x-gzip' length 686145 bytes (670 KB) 2021-05-16T23:14:33.0651969Z ================================================== 2021-05-16T23:14:33.0652842Z downloaded 670 KB 2021-05-16T23:14:33.0653345Z 2021-05-16T23:14:33.0688120Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-16T23:14:33.3510490Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-16T23:14:33.3512756Z ================================================== 2021-05-16T23:14:33.3513284Z downloaded 13 KB 2021-05-16T23:14:33.3513615Z 2021-05-16T23:14:33.3557600Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-16T23:14:33.6367338Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-16T23:14:33.6531271Z ================================================== 2021-05-16T23:14:33.6532400Z downloaded 264 KB 2021-05-16T23:14:33.6532869Z 2021-05-16T23:14:33.6580084Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-16T23:14:34.0460205Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-16T23:14:34.0689055Z ================================================== 2021-05-16T23:14:34.0690006Z downloaded 464 KB 2021-05-16T23:14:34.0690540Z 2021-05-16T23:14:34.0725929Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-16T23:14:34.3565089Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-05-16T23:14:35.2421847Z Content type 'application/x-tar' length 6100 bytes 2021-05-16T23:14:35.2422650Z ================================================== 2021-05-16T23:14:35.2424635Z downloaded 6100 bytes 2021-05-16T23:14:35.2424977Z 2021-05-16T23:14:35.2462292Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-05-16T23:14:35.5186231Z Content type 'binary/octet-stream' length 60723 bytes (59 KB) 2021-05-16T23:14:35.5265009Z ================================================== 2021-05-16T23:14:35.5266014Z downloaded 59 KB 2021-05-16T23:14:35.5266616Z 2021-05-16T23:14:35.5301526Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-16T23:14:35.8223273Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-16T23:14:35.8224455Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz' 2021-05-16T23:14:36.9187364Z Content type 'binary/octet-stream' length 74923 bytes (73 KB) 2021-05-16T23:14:36.9188986Z ================================================== 2021-05-16T23:14:36.9189849Z downloaded 73 KB 2021-05-16T23:14:36.9190413Z 2021-05-16T23:14:36.9229942Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz' 2021-05-16T23:14:37.2252600Z Content type 'binary/octet-stream' length 12096 bytes (11 KB) 2021-05-16T23:14:37.2254575Z ================================================== 2021-05-16T23:14:37.2255992Z downloaded 11 KB 2021-05-16T23:14:37.2256628Z 2021-05-16T23:14:37.2303477Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-16T23:14:37.5146414Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-16T23:14:37.5304484Z 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2021-05-16T23:14:38.2652197Z Content type 'binary/octet-stream' length 15361 bytes (15 KB) 2021-05-16T23:14:38.2654236Z ================================================== 2021-05-16T23:14:38.2655418Z downloaded 15 KB 2021-05-16T23:14:38.2656291Z 2021-05-16T23:14:38.2677951Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringr_1.4.0.tar.gz' 2021-05-16T23:14:38.5651011Z Content type 'application/x-tar' length 135526 bytes (132 KB) 2021-05-16T23:14:38.5759945Z ================================================== 2021-05-16T23:14:38.5761321Z downloaded 132 KB 2021-05-16T23:14:38.5762133Z 2021-05-16T23:14:38.5792966Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.1.tar.gz' 2021-05-16T23:14:38.8532430Z Content type 'binary/octet-stream' length 7574951 bytes (7.2 MB) 2021-05-16T23:14:38.9166632Z ================================================== 2021-05-16T23:14:38.9167304Z downloaded 7.2 MB 2021-05-16T23:14:38.9167734Z 2021-05-16T23:14:38.9198557Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-16T23:14:39.2031208Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-16T23:14:39.4214983Z ================================================== 2021-05-16T23:14:39.4215493Z downloaded 2.8 MB 2021-05-16T23:14:39.4215795Z 2021-05-16T23:14:39.4253340Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-16T23:14:39.7006136Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-16T23:14:39.7262695Z ================================================== 2021-05-16T23:14:39.7263522Z downloaded 869 KB 2021-05-16T23:14:39.7263978Z 2021-05-16T23:14:39.7299649Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-05-16T23:14:40.0119801Z Content type 'application/x-tar' length 134376 bytes (131 KB) 2021-05-16T23:14:40.0265543Z ================================================== 2021-05-16T23:14:40.0266365Z downloaded 131 KB 2021-05-16T23:14:40.0266784Z 2021-05-16T23:14:40.0311407Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-05-16T23:14:40.3015847Z Content type 'application/x-tar' length 83765 bytes (81 KB) 2021-05-16T23:14:40.3076520Z ================================================== 2021-05-16T23:14:40.3077205Z downloaded 81 KB 2021-05-16T23:14:40.3077627Z 2021-05-16T23:14:40.3132129Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-16T23:14:40.5861736Z Content type 'application/x-tar' length 11313 bytes (11 KB) 2021-05-16T23:14:40.5862725Z ================================================== 2021-05-16T23:14:40.5863211Z downloaded 11 KB 2021-05-16T23:14:40.5863623Z 2021-05-16T23:14:40.5900206Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-16T23:14:40.8708941Z Content type 'application/x-tar' length 45020 bytes (43 KB) 2021-05-16T23:14:40.8759878Z ================================================== 2021-05-16T23:14:40.8760713Z downloaded 43 KB 2021-05-16T23:14:40.8761227Z 2021-05-16T23:14:40.8805458Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-16T23:14:41.0568751Z Content type 'binary/octet-stream' length 10377 bytes (10 KB) 2021-05-16T23:14:41.0569514Z ================================================== 2021-05-16T23:14:41.0572667Z downloaded 10 KB 2021-05-16T23:14:41.0573437Z 2021-05-16T23:14:41.0603565Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-05-16T23:14:41.2415518Z Content type 'binary/octet-stream' length 30622 bytes (29 KB) 2021-05-16T23:14:41.2422354Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-16T23:14:42.1175889Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-16T23:14:42.1338717Z ================================================== 2021-05-16T23:14:42.1339309Z downloaded 249 KB 2021-05-16T23:14:42.1339766Z 2021-05-16T23:14:42.1390995Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-16T23:14:42.5282105Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-16T23:14:42.5283457Z ================================================== 2021-05-16T23:14:42.5284321Z downloaded 43 KB 2021-05-16T23:14:42.5284877Z 2021-05-16T23:14:42.5335567Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-16T23:14:42.8050443Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-16T23:14:42.8226950Z ================================================== 2021-05-16T23:14:42.8227568Z downloaded 361 KB 2021-05-16T23:14:42.8227899Z 2021-05-16T23:14:43.1682610Z * installing *source* package ‘utf8’ ... 2021-05-16T23:14:43.1749611Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:43.1751479Z ** using staged installation 2021-05-16T23:14:43.1886142Z ** libs 2021-05-16T23:14:43.1959281Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-16T23:14:43.2732387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-16T23:14:43.4240025Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-16T23:14:43.4889471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:14:43.5339359Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-16T23:14:43.6010140Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-16T23:14:43.7586254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-16T23:14:43.8232920Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-16T23:14:43.9488391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-16T23:14:44.0333586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-16T23:14:44.1282613Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-16T23:14:44.1975354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-16T23:14:44.2663494Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-16T23:14:44.3318330Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-16T23:14:44.3898387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-16T23:14:44.4516596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-16T23:14:44.5240006Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-16T23:14:44.5802764Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-16T23:14:44.6260852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-16T23:14:44.6956666Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-16T23:14:44.7439893Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-16T23:14:44.9361436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-16T23:14:45.2268975Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-16T23:14:45.3992276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-16T23:14:45.4760747Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-16T23:14:45.5462912Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-16T23:14:45.6241873Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-16T23:14:45.6996471Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-16T23:14:45.7075344Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:14:45.7438925Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-16T23:14:45.7441564Z ** R 2021-05-16T23:14:45.7516610Z ** inst 2021-05-16T23:14:45.7525973Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:46.1825214Z ** help 2021-05-16T23:14:46.2121223Z *** installing help indices 2021-05-16T23:14:46.2359623Z ** building package indices 2021-05-16T23:14:46.4251700Z ** installing vignettes 2021-05-16T23:14:46.4299961Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:46.6133168Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:14:46.6336335Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:46.8005738Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:46.8011384Z * DONE (utf8) 2021-05-16T23:14:46.9989511Z * installing *source* package ‘pkgconfig’ ... 2021-05-16T23:14:46.9998658Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:47.0000522Z ** using staged installation 2021-05-16T23:14:47.0113246Z ** R 2021-05-16T23:14:47.0140640Z ** inst 2021-05-16T23:14:47.0150956Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:47.2439683Z ** help 2021-05-16T23:14:47.2647978Z *** installing help indices 2021-05-16T23:14:47.2820990Z ** building package indices 2021-05-16T23:14:47.4579974Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:47.6219204Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:47.7809761Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:47.7813652Z * DONE (pkgconfig) 2021-05-16T23:14:48.0376208Z * installing *source* package ‘fansi’ ... 2021-05-16T23:14:48.0407285Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:48.0410979Z ** using staged installation 2021-05-16T23:14:48.0521342Z ** libs 2021-05-16T23:14:48.0585806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-16T23:14:48.0985129Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-16T23:14:48.1663051Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:14:48.2125801Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-16T23:14:48.2830619Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-16T23:14:48.7107966Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-16T23:14:48.7446452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-16T23:14:49.0768887Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-16T23:14:49.2045799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-16T23:14:49.2482442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-16T23:14:49.3649102Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-16T23:14:49.5996096Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-16T23:14:49.7068090Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-16T23:14:49.7560827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-16T23:14:49.8161719Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:14:49.9622307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-16T23:14:50.2531214Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:14:50.2836513Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-16T23:14:50.2838497Z ** R 2021-05-16T23:14:50.2924804Z ** inst 2021-05-16T23:14:50.2934278Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:50.8623821Z ** help 2021-05-16T23:14:50.9209270Z *** installing help indices 2021-05-16T23:14:50.9531527Z ** building package indices 2021-05-16T23:14:51.1611366Z ** installing vignettes 2021-05-16T23:14:51.1660172Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:51.3368626Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:14:51.3533926Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:51.5333045Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:51.5340976Z * DONE (fansi) 2021-05-16T23:14:51.9343256Z * installing *source* package ‘diffobj’ ... 2021-05-16T23:14:51.9435963Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:51.9437594Z ** using staged installation 2021-05-16T23:14:51.9572491Z ** libs 2021-05-16T23:14:51.9631116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-16T23:14:52.1580143Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-16T23:14:52.2145782Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:14:52.2550608Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:14:52.2756462Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-16T23:14:52.2770448Z ** R 2021-05-16T23:14:52.3162955Z ** inst 2021-05-16T23:14:52.3180311Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:14:58.0011376Z ** help 2021-05-16T23:14:58.2080082Z *** installing help indices 2021-05-16T23:14:58.3438432Z ** building package indices 2021-05-16T23:14:58.6176715Z ** installing vignettes 2021-05-16T23:14:58.6245535Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:14:58.9591569Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:14:58.9792312Z ** testing if installed package can be loaded from final location 2021-05-16T23:14:59.4099318Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:14:59.4182818Z * DONE (diffobj) 2021-05-16T23:14:59.7082077Z * installing *source* package ‘ps’ ... 2021-05-16T23:14:59.7112899Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-16T23:14:59.7115559Z ** using staged installation 2021-05-16T23:14:59.9068691Z ** libs 2021-05-16T23:14:59.9129447Z gcc -g -O2 -Wall px.c -o px 2021-05-16T23:15:00.0471336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:15:00.1126035Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-16T23:15:00.1741740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-16T23:15:00.2424334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-16T23:15:00.4011150Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-16T23:15:00.4546718Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-16T23:15:00.7479030Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-16T23:15:00.9177774Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-16T23:15:01.0271111Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-16T23:15:01.1677547Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-16T23:15:01.6494324Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:15:01.6797124Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-16T23:15:01.6812444Z ** R 2021-05-16T23:15:01.6917333Z ** inst 2021-05-16T23:15:01.6927302Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:02.7008958Z ** help 2021-05-16T23:15:02.8452855Z *** installing help indices 2021-05-16T23:15:02.9246199Z ** building package indices 2021-05-16T23:15:03.2180614Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:03.4017871Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:15:03.4195564Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:03.6184081Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:03.6201857Z * DONE (ps) 2021-05-16T23:15:03.8205922Z * installing *source* package ‘praise’ ... 2021-05-16T23:15:03.8215081Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:03.8216982Z ** using staged installation 2021-05-16T23:15:03.8318868Z ** R 2021-05-16T23:15:03.8359079Z ** inst 2021-05-16T23:15:03.8367229Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:04.0754977Z ** help 2021-05-16T23:15:04.0866771Z *** installing help indices 2021-05-16T23:15:04.1090864Z ** building package indices 2021-05-16T23:15:04.2899174Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:04.4623717Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:04.6321289Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:04.6326536Z * DONE (praise) 2021-05-16T23:15:04.9332537Z * installing *source* package ‘pkgload’ ... 2021-05-16T23:15:04.9382910Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:04.9384134Z ** using staged installation 2021-05-16T23:15:04.9506661Z ** R 2021-05-16T23:15:04.9603575Z ** inst 2021-05-16T23:15:04.9609827Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:05.7605037Z ** help 2021-05-16T23:15:05.8139932Z *** installing help indices 2021-05-16T23:15:05.8571989Z ** building package indices 2021-05-16T23:15:06.0754700Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:06.5022944Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:06.9449787Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:06.9461202Z * DONE (pkgload) 2021-05-16T23:15:07.1843371Z * installing *source* package ‘evaluate’ ... 2021-05-16T23:15:07.1858313Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:07.1860271Z ** using staged installation 2021-05-16T23:15:07.1984167Z ** R 2021-05-16T23:15:07.2035456Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:07.6595266Z ** help 2021-05-16T23:15:07.6857893Z *** installing help indices 2021-05-16T23:15:07.7140265Z ** building package indices 2021-05-16T23:15:07.9102532Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:08.0854347Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:08.2614741Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:08.2628226Z * DONE (evaluate) 2021-05-16T23:15:08.4695362Z * installing *source* package ‘ellipsis’ ... 2021-05-16T23:15:08.4707470Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:08.4708774Z ** using staged installation 2021-05-16T23:15:08.4855557Z ** libs 2021-05-16T23:15:08.4901193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-16T23:15:08.5630591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:15:08.6051562Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:15:08.6271184Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-16T23:15:08.6286941Z ** R 2021-05-16T23:15:08.6319753Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:08.8746121Z ** help 2021-05-16T23:15:08.9001469Z *** installing help indices 2021-05-16T23:15:08.9201166Z ** building package indices 2021-05-16T23:15:09.1228737Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:09.3466307Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:15:09.3665258Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:09.5641435Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:09.5647328Z * DONE (ellipsis) 2021-05-16T23:15:09.8284134Z * installing *source* package ‘digest’ ... 2021-05-16T23:15:09.8312015Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:09.8314842Z ** using staged installation 2021-05-16T23:15:09.8413166Z ** libs 2021-05-16T23:15:09.8467411Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-16T23:15:10.0234262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-16T23:15:10.3426626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-16T23:15:11.0119294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-16T23:15:11.2566770Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-16T23:15:11.8035139Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-16T23:15:11.8785716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-16T23:15:12.0949965Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-16T23:15:12.1592671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:15:12.1849044Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-16T23:15:12.3297108Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-16T23:15:12.3829521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-16T23:15:12.4567622Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-16T23:15:12.7315821Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-16T23:15:12.8338950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-16T23:15:13.4057189Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-16T23:15:13.5236868Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-16T23:15:13.7721802Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:15:13.8152418Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-16T23:15:13.8171932Z ** R 2021-05-16T23:15:13.8225943Z ** demo 2021-05-16T23:15:13.8230312Z ** inst 2021-05-16T23:15:13.8249266Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:14.3716709Z ** help 2021-05-16T23:15:14.4125866Z *** installing help indices 2021-05-16T23:15:14.4405899Z ** building package indices 2021-05-16T23:15:14.6586820Z ** installing vignettes 2021-05-16T23:15:14.6631386Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:14.8335810Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:15:14.8527707Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:15.0387036Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:15.0396678Z * DONE (digest) 2021-05-16T23:15:15.2549980Z * installing *source* package ‘brio’ ... 2021-05-16T23:15:15.2562568Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:15.2564410Z ** using staged installation 2021-05-16T23:15:15.2724716Z ** libs 2021-05-16T23:15:15.2778518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-16T23:15:15.3153208Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-16T23:15:15.3641726Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:15:15.4116842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-16T23:15:15.4668870Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-16T23:15:15.5171735Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-16T23:15:15.6089341Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-16T23:15:15.6596694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-16T23:15:15.7208951Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:15:15.7475700Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-16T23:15:15.7477229Z ** R 2021-05-16T23:15:15.7513305Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:15.9699198Z ** help 2021-05-16T23:15:15.9890698Z *** installing help indices 2021-05-16T23:15:16.0083304Z ** building package indices 2021-05-16T23:15:16.1967457Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:16.3762005Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:15:16.3954691Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:16.5783426Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:16.5788609Z * DONE (brio) 2021-05-16T23:15:16.8561028Z * installing *source* package ‘xml2’ ... 2021-05-16T23:15:16.8598125Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:16.8600215Z ** using staged installation 2021-05-16T23:15:16.8718309Z Found pkg-config cflags and libs! 2021-05-16T23:15:16.9595025Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-16T23:15:16.9596028Z Using PKG_LIBS=-lxml2 2021-05-16T23:15:17.1976538Z ** libs 2021-05-16T23:15:17.2024566Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-16T23:15:17.6899719Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:15:17.7411369Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-16T23:15:18.3078772Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-16T23:15:18.7600986Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-16T23:15:19.4831029Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-16T23:15:21.3292050Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-16T23:15:21.8655790Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-16T23:15:22.4397979Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-16T23:15:22.8980597Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-16T23:15:23.3404809Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:15:23.4298423Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-16T23:15:23.4328634Z ** R 2021-05-16T23:15:23.4443908Z ** inst 2021-05-16T23:15:23.4458365Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:24.4105616Z ** help 2021-05-16T23:15:24.5022354Z *** installing help indices 2021-05-16T23:15:24.5476547Z ** building package indices 2021-05-16T23:15:24.7718270Z ** installing vignettes 2021-05-16T23:15:24.7823493Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:24.9705284Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:15:24.9897965Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:25.2048737Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:25.2071138Z * DONE (xml2) 2021-05-16T23:15:25.4995292Z * installing *source* package ‘xfun’ ... 2021-05-16T23:15:25.5024608Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:25.5026259Z ** using staged installation 2021-05-16T23:15:25.5181734Z ** libs 2021-05-16T23:15:25.5266219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T23:15:25.6191062Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:15:25.6605331Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:15:25.6912619Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-16T23:15:25.6922430Z ** R 2021-05-16T23:15:25.7060552Z ** inst 2021-05-16T23:15:25.7072189Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:15:26.9204681Z ** help 2021-05-16T23:15:27.0649528Z *** installing help indices 2021-05-16T23:15:27.1596153Z ** building package indices 2021-05-16T23:15:27.4355146Z ** installing vignettes 2021-05-16T23:15:27.4409168Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:15:27.6196481Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:15:27.6350890Z ** testing if installed package can be loaded from final location 2021-05-16T23:15:27.8207656Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:15:27.8234379Z * DONE (xfun) 2021-05-16T23:15:30.2043660Z * installing *source* package ‘stringi’ ... 2021-05-16T23:15:30.3124245Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-16T23:15:30.3125671Z ** using staged installation 2021-05-16T23:15:30.4464453Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-16T23:15:30.4465484Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-16T23:15:30.6057146Z checking for endianness... little 2021-05-16T23:15:30.7703984Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-16T23:15:30.9301172Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-16T23:15:30.9306694Z checking for cat... /usr/bin/cat 2021-05-16T23:15:31.1582844Z checking for local ICUDT_DIR... icu69/data 2021-05-16T23:15:31.1583942Z checking for gcc... gcc 2021-05-16T23:15:31.2197179Z checking whether the C compiler works... yes 2021-05-16T23:15:31.2198921Z checking for C compiler default output file name... a.out 2021-05-16T23:15:31.2654882Z checking for suffix of executables... 2021-05-16T23:15:31.3137003Z checking whether we are cross compiling... no 2021-05-16T23:15:31.3398592Z checking for suffix of object files... o 2021-05-16T23:15:31.3633638Z checking whether we are using the GNU C compiler... yes 2021-05-16T23:15:31.3837886Z checking whether gcc accepts -g... yes 2021-05-16T23:15:31.4202703Z checking for gcc option to accept ISO C89... none needed 2021-05-16T23:15:31.4440198Z checking how to run the C preprocessor... gcc -E 2021-05-16T23:15:31.4678459Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-16T23:15:31.4694030Z checking for egrep... /usr/bin/grep -E 2021-05-16T23:15:31.5732006Z checking for ANSI C header files... yes 2021-05-16T23:15:31.5988133Z checking for sys/types.h... yes 2021-05-16T23:15:31.6291261Z checking for sys/stat.h... yes 2021-05-16T23:15:31.6577170Z checking for stdlib.h... yes 2021-05-16T23:15:31.6905100Z checking for string.h... yes 2021-05-16T23:15:31.7234773Z checking for memory.h... yes 2021-05-16T23:15:31.7575126Z checking for strings.h... yes 2021-05-16T23:15:31.7968331Z checking for inttypes.h... yes 2021-05-16T23:15:31.8357169Z checking for stdint.h... yes 2021-05-16T23:15:31.8758317Z checking for unistd.h... yes 2021-05-16T23:15:31.9245481Z checking elf.h usability... yes 2021-05-16T23:15:31.9359019Z checking elf.h presence... yes 2021-05-16T23:15:31.9359964Z checking for elf.h... yes 2021-05-16T23:15:31.9892431Z checking whether we are using the GNU C++ compiler... yes 2021-05-16T23:15:32.0134789Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-16T23:15:32.3399259Z checking whether the C++ compiler supports the long long type... yes 2021-05-16T23:15:32.3681924Z checking whether the compiler implements namespaces... yes 2021-05-16T23:15:32.5178875Z checking whether the compiler supports Standard Template Library... yes 2021-05-16T23:15:33.0148272Z checking whether std::map is available... yes 2021-05-16T23:15:33.0177011Z checking for pkg-config... /usr/bin/pkg-config 2021-05-16T23:15:33.0323262Z checking with pkg-config for the system ICU4C... 66.1 2021-05-16T23:15:33.0344546Z checking for ICU4C >= 55... yes 2021-05-16T23:15:33.0417597Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-16T23:15:33.3839937Z checking whether an ICU4C-based project can be built... yes 2021-05-16T23:15:33.4466227Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-16T23:15:33.7133510Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-16T23:15:34.5146060Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-16T23:15:35.0896672Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-16T23:15:35.1277510Z configure: creating ./config.status 2021-05-16T23:15:35.2024513Z config.status: creating src/Makevars 2021-05-16T23:15:35.2182138Z config.status: creating src/uconfig_local.h 2021-05-16T23:15:35.2340170Z config.status: creating src/install.libs.R 2021-05-16T23:15:35.2499657Z 2021-05-16T23:15:35.2500611Z *** stringi configure summary: 2021-05-16T23:15:35.2501299Z ICU_FOUND=1 2021-05-16T23:15:35.2501992Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-16T23:15:35.2503221Z STRINGI_CFLAGS= -fpic 2021-05-16T23:15:35.2504318Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-16T23:15:35.2505380Z STRINGI_CXXFLAGS= -fpic 2021-05-16T23:15:35.2506693Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-16T23:15:35.2507528Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-16T23:15:35.2510569Z 2021-05-16T23:15:35.2511279Z *** Compiler settings used: 2021-05-16T23:15:35.2511780Z CC=gcc 2021-05-16T23:15:35.2512426Z LD=g++ -std=gnu++14 2021-05-16T23:15:35.2513066Z CFLAGS=-g -O2 -fpic 2021-05-16T23:15:35.2516250Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-16T23:15:35.2516959Z CXX=g++ -std=gnu++11 2021-05-16T23:15:35.2517533Z CXXFLAGS=-g -O2 -fpic 2021-05-16T23:15:35.2517923Z LDFLAGS= 2021-05-16T23:15:35.2518271Z LIBS= 2021-05-16T23:15:35.2518478Z 2021-05-16T23:15:35.2875595Z ** libs 2021-05-16T23:15:35.2963449Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-16T23:15:35.9510978Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-16T23:15:36.5922125Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-16T23:15:37.2242431Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-16T23:15:37.9201095Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-16T23:15:38.4296713Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-16T23:15:39.2535130Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-16T23:15:39.8352355Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-16T23:15:40.4467425Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-16T23:15:41.0270150Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-16T23:15:41.6876919Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-16T23:15:42.3552966Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-16T23:15:43.1221295Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-16T23:15:43.7772488Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-16T23:15:44.3681481Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-16T23:15:45.2928736Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-16T23:15:46.9212316Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-16T23:15:47.6089107Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-16T23:15:48.2782386Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-16T23:15:48.8065648Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-16T23:15:49.3278098Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-16T23:15:50.2473588Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-16T23:15:50.8947402Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-16T23:15:51.5325063Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-16T23:15:52.2893387Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-16T23:15:53.0020970Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-16T23:15:53.5761002Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-16T23:15:54.1855932Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-16T23:15:54.8030543Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-16T23:15:55.6577525Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-16T23:15:56.5009444Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-16T23:15:57.5083728Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-16T23:15:58.3352268Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-16T23:15:59.1284560Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-16T23:15:59.9202066Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-16T23:16:00.5973868Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-16T23:16:01.2903103Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-16T23:16:01.9184686Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-16T23:16:02.5655558Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-16T23:16:03.3966076Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-16T23:16:04.2079846Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-16T23:16:05.0859345Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-16T23:16:05.9246608Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-16T23:16:06.6882387Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-16T23:16:07.4292501Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-16T23:16:08.0027394Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-16T23:16:08.6902649Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-16T23:16:09.3808287Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-16T23:16:10.0395628Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-16T23:16:11.2017061Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-16T23:16:11.2038346Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-16T23:16:11.8227473Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-16T23:16:12.5537754Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-16T23:16:13.3103646Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-16T23:16:14.0401941Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-16T23:16:14.7580431Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-16T23:16:15.4105495Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-16T23:16:15.4274971Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-16T23:16:16.2607173Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-16T23:16:16.8270633Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-16T23:16:17.4130560Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-16T23:16:18.2537621Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-16T23:16:19.0506107Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-16T23:16:19.9956844Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-16T23:16:20.7272950Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-16T23:16:21.5760215Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-16T23:16:22.2304289Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-16T23:16:23.7923084Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-16T23:16:24.4169756Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-16T23:16:24.9885201Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-16T23:16:25.7819432Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-16T23:16:26.3157204Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-16T23:16:26.9241676Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-16T23:16:27.7255057Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-16T23:16:28.4438636Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-16T23:16:29.2589495Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-16T23:16:29.9398799Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-16T23:16:30.6419485Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-16T23:16:31.2495749Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-16T23:16:31.8031412Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-16T23:16:32.3652257Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-16T23:16:32.8620553Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-16T23:16:33.4162273Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-16T23:16:34.7003146Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:16:34.8910510Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-16T23:16:34.9615354Z ** R 2021-05-16T23:16:34.9898629Z ** inst 2021-05-16T23:16:34.9902389Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:16:35.9524654Z ** help 2021-05-16T23:16:36.3675927Z *** installing help indices 2021-05-16T23:16:36.5506520Z ** building package indices 2021-05-16T23:16:36.9111254Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:16:37.0838414Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:16:37.1058107Z ** testing if installed package can be loaded from final location 2021-05-16T23:16:37.2928780Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:16:37.2941046Z * DONE (stringi) 2021-05-16T23:16:38.1850531Z * installing *source* package ‘Rcpp’ ... 2021-05-16T23:16:38.2196010Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-16T23:16:38.2197434Z ** using staged installation 2021-05-16T23:16:38.2299905Z ** libs 2021-05-16T23:16:38.2350826Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-16T23:16:41.1399558Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-16T23:16:56.4897039Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-16T23:16:56.6919316Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-16T23:17:00.1562658Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-16T23:17:06.9085759Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-16T23:17:10.0416357Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:17:10.2250382Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-16T23:17:10.2375932Z ** R 2021-05-16T23:17:10.2526897Z ** inst 2021-05-16T23:17:10.2949483Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:12.0265481Z ** help 2021-05-16T23:17:12.1254947Z *** installing help indices 2021-05-16T23:17:12.1790112Z ** building package indices 2021-05-16T23:17:12.4114989Z ** installing vignettes 2021-05-16T23:17:12.4162618Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:12.6751413Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:17:12.6963217Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:12.9556550Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:12.9635729Z * DONE (Rcpp) 2021-05-16T23:17:13.2439128Z * installing *source* package ‘commonmark’ ... 2021-05-16T23:17:13.2480433Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:13.2482163Z ** using staged installation 2021-05-16T23:17:13.2608714Z ** libs 2021-05-16T23:17:13.2677384Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-16T23:17:13.2722017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-16T23:17:13.3237138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:17:13.3646884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-16T23:17:13.4230838Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-16T23:17:13.4726943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-16T23:17:13.7547140Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-16T23:17:13.8458862Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-16T23:17:14.3214179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-16T23:17:15.0720560Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-16T23:17:16.9359594Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-16T23:17:20.3752280Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-16T23:17:20.5241029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-16T23:17:20.5730979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-16T23:17:20.6974672Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-16T23:17:20.7959117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-16T23:17:20.8785673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-16T23:17:21.0685191Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-16T23:17:21.2817046Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-16T23:17:21.4087582Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-16T23:17:21.4543320Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-16T23:17:21.5004029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-16T23:17:21.6218365Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-16T23:17:21.6550312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-16T23:17:21.7149359Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-16T23:17:21.7579960Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-16T23:17:21.8007580Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-16T23:17:21.8484768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-16T23:17:21.9116001Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-16T23:17:22.0096293Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-16T23:17:22.0585248Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-16T23:17:22.1342013Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-16T23:17:22.2907993Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-16T23:17:22.3195842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-16T23:17:22.4504908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-16T23:17:22.5299174Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-16T23:17:22.7945754Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-16T23:17:22.8411139Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-16T23:17:22.8529257Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:17:22.8931674Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-16T23:17:22.8988893Z ** R 2021-05-16T23:17:22.9015117Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:23.1194733Z ** help 2021-05-16T23:17:23.1332634Z *** installing help indices 2021-05-16T23:17:23.1486085Z ** building package indices 2021-05-16T23:17:23.3289762Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:23.5123495Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:17:23.5344835Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:23.7031786Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:23.7037242Z * DONE (commonmark) 2021-05-16T23:17:23.9373156Z * installing *source* package ‘brew’ ... 2021-05-16T23:17:23.9376208Z ** using staged installation 2021-05-16T23:17:23.9453773Z ** R 2021-05-16T23:17:23.9482454Z ** inst 2021-05-16T23:17:23.9511277Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:24.2676291Z ** help 2021-05-16T23:17:24.2825412Z *** installing help indices 2021-05-16T23:17:24.2987359Z ** building package indices 2021-05-16T23:17:24.4773324Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:24.6426947Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:24.8027075Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:24.8038025Z * DONE (brew) 2021-05-16T23:17:25.0117096Z * installing *source* package ‘sessioninfo’ ... 2021-05-16T23:17:25.0129441Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:25.0131405Z ** using staged installation 2021-05-16T23:17:25.0282813Z ** R 2021-05-16T23:17:25.0322849Z ** inst 2021-05-16T23:17:25.0329189Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:25.4520677Z ** help 2021-05-16T23:17:25.4682486Z *** installing help indices 2021-05-16T23:17:25.4871421Z ** building package indices 2021-05-16T23:17:25.6792843Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:25.8912634Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:26.1232740Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:26.1238739Z * DONE (sessioninfo) 2021-05-16T23:17:26.3280513Z * installing *source* package ‘prettyunits’ ... 2021-05-16T23:17:26.3290795Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:26.3292785Z ** using staged installation 2021-05-16T23:17:26.3384240Z ** R 2021-05-16T23:17:26.3421250Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:26.6356163Z ** help 2021-05-16T23:17:26.6583390Z *** installing help indices 2021-05-16T23:17:26.6781884Z ** building package indices 2021-05-16T23:17:26.8620120Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:27.0209646Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:27.1956393Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:27.1961716Z * DONE (prettyunits) 2021-05-16T23:17:27.6716702Z * installing *source* package ‘vctrs’ ... 2021-05-16T23:17:27.6843792Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:27.6845443Z ** using staged installation 2021-05-16T23:17:27.6998168Z ** libs 2021-05-16T23:17:27.7068220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-16T23:17:27.8111606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-16T23:17:27.8881681Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-16T23:17:27.9652093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-16T23:17:28.2049158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-16T23:17:28.3064828Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-16T23:17:28.4423485Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-16T23:17:28.4999906Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-16T23:17:28.5920775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-16T23:17:28.6649818Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-16T23:17:28.7861070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-16T23:17:28.9808597Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-16T23:17:29.1076009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-16T23:17:29.1934867Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-16T23:17:29.4554298Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-16T23:17:29.5205486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-16T23:17:29.8795671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-16T23:17:29.9656611Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-16T23:17:30.0908605Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-16T23:17:30.2112569Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-16T23:17:30.2678367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-16T23:17:30.4915056Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:17:30.5550342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-16T23:17:30.8975003Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-16T23:17:30.9762800Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-16T23:17:31.7272132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-16T23:17:31.9088610Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-16T23:17:31.9837182Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-16T23:17:32.0649448Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-16T23:17:32.2553253Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-16T23:17:32.3743431Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-16T23:17:32.5143482Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-16T23:17:32.6270525Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-16T23:17:32.7606771Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-16T23:17:32.9949154Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-16T23:17:33.0954227Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-16T23:17:33.1795166Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-16T23:17:33.2986156Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-16T23:17:33.7766652Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-16T23:17:34.1115853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-16T23:17:34.3633760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-16T23:17:34.5429763Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-16T23:17:34.8440514Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-16T23:17:34.8996050Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-16T23:17:35.0977314Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-16T23:17:35.2398130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-16T23:17:35.3369789Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-16T23:17:35.6739168Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-16T23:17:35.8247394Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-16T23:17:35.9688297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-16T23:17:36.0924270Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-16T23:17:36.1716129Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-16T23:17:36.3015699Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-16T23:17:36.4467315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-16T23:17:36.5881448Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-16T23:17:36.6883163Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-16T23:17:36.7676410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-16T23:17:36.8376235Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-16T23:17:36.8954101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:17:37.5422441Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-16T23:17:37.5826099Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:17:37.6448173Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-16T23:17:37.6482877Z ** R 2021-05-16T23:17:37.6831215Z ** inst 2021-05-16T23:17:37.6852600Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:40.3341791Z ** help 2021-05-16T23:17:40.6252173Z *** installing help indices 2021-05-16T23:17:40.8134720Z *** copying figures 2021-05-16T23:17:40.8143629Z ** building package indices 2021-05-16T23:17:41.1916140Z ** installing vignettes 2021-05-16T23:17:41.2103090Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:41.4903132Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:17:41.5126784Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:41.8193305Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:41.8226646Z * DONE (vctrs) 2021-05-16T23:17:42.1445894Z * installing *source* package ‘processx’ ... 2021-05-16T23:17:42.1487047Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:42.1488271Z ** using staged installation 2021-05-16T23:17:42.1677808Z ** libs 2021-05-16T23:17:42.1741558Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-16T23:17:42.3412712Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-16T23:17:42.3414253Z supervisor/utils.c -o supervisor/supervisor 2021-05-16T23:17:42.5333505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T23:17:42.6222469Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-16T23:17:42.7171841Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-16T23:17:42.7821621Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-16T23:17:42.7823316Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-16T23:17:42.8072722Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:17:42.8853699Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-16T23:17:43.0040973Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-16T23:17:43.3748584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-16T23:17:43.4730218Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-16T23:17:43.5948531Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-16T23:17:43.6970406Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-16T23:17:43.7770954Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-16T23:17:44.1353227Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-16T23:17:44.2409081Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-16T23:17:44.3624925Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-16T23:17:44.4256733Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-16T23:17:44.5105725Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:17:44.5396062Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-16T23:17:44.5433269Z ** R 2021-05-16T23:17:44.5576172Z ** inst 2021-05-16T23:17:44.5584688Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:46.2372094Z ** help 2021-05-16T23:17:46.3279671Z *** installing help indices 2021-05-16T23:17:46.3741591Z ** building package indices 2021-05-16T23:17:46.6253886Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:46.8433714Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:17:46.8719912Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:47.1069920Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:47.1086268Z * DONE (processx) 2021-05-16T23:17:47.3915463Z * installing *source* package ‘markdown’ ... 2021-05-16T23:17:47.3942819Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:47.3944086Z ** using staged installation 2021-05-16T23:17:47.4111386Z ** libs 2021-05-16T23:17:47.4174569Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-16T23:17:47.4911906Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-16T23:17:47.5463496Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-16T23:17:47.7241101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-16T23:17:47.8283233Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-16T23:17:47.9218846Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-16T23:17:47.9595774Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-16T23:17:48.0019416Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-16T23:17:48.2263271Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-16T23:17:48.3743407Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-16T23:17:49.4722029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-16T23:17:49.5230445Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:17:49.5516437Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-16T23:17:49.5533037Z ** R 2021-05-16T23:17:49.5588848Z ** inst 2021-05-16T23:17:49.5606694Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:49.9756682Z ** help 2021-05-16T23:17:50.0141266Z *** installing help indices 2021-05-16T23:17:50.0420648Z ** building package indices 2021-05-16T23:17:50.2474848Z ** installing vignettes 2021-05-16T23:17:50.2517644Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:50.4243157Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:17:50.4428381Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:50.6133977Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:50.6143616Z * DONE (markdown) 2021-05-16T23:17:50.8160518Z * installing *source* package ‘highr’ ... 2021-05-16T23:17:50.8171052Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:50.8172349Z ** using staged installation 2021-05-16T23:17:50.8319667Z ** R 2021-05-16T23:17:50.8355085Z ** inst 2021-05-16T23:17:50.8363083Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:51.1502276Z ** help 2021-05-16T23:17:51.1626241Z *** installing help indices 2021-05-16T23:17:51.1829241Z ** building package indices 2021-05-16T23:17:51.3804768Z ** installing vignettes 2021-05-16T23:17:51.3859536Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:51.5759041Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:51.7680375Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:51.7687415Z * DONE (highr) 2021-05-16T23:17:52.0991587Z * installing *source* package ‘stringr’ ... 2021-05-16T23:17:52.1028977Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:52.1030276Z ** using staged installation 2021-05-16T23:17:52.1228108Z ** R 2021-05-16T23:17:52.1318558Z ** data 2021-05-16T23:17:52.1323868Z *** moving datasets to lazyload DB 2021-05-16T23:17:52.1524483Z ** inst 2021-05-16T23:17:52.1541470Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:52.7157819Z ** help 2021-05-16T23:17:52.7929853Z *** installing help indices 2021-05-16T23:17:52.8490251Z *** copying figures 2021-05-16T23:17:52.8492325Z ** building package indices 2021-05-16T23:17:53.0915674Z ** installing vignettes 2021-05-16T23:17:53.0980095Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:53.3009087Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:53.5076790Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:53.5085682Z * DONE (stringr) 2021-05-16T23:17:53.7094543Z * installing *source* package ‘rversions’ ... 2021-05-16T23:17:53.7105463Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:53.7108619Z ** using staged installation 2021-05-16T23:17:53.7249138Z ** R 2021-05-16T23:17:53.7285533Z ** inst 2021-05-16T23:17:53.7293643Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:54.0394699Z ** help 2021-05-16T23:17:54.0617859Z *** installing help indices 2021-05-16T23:17:54.0820673Z *** copying figures 2021-05-16T23:17:54.0823417Z ** building package indices 2021-05-16T23:17:54.2868542Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:54.4803259Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:54.6662180Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:54.6668921Z * DONE (rversions) 2021-05-16T23:17:55.0507456Z * installing *source* package ‘pillar’ ... 2021-05-16T23:17:55.0616595Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:55.0621739Z ** using staged installation 2021-05-16T23:17:55.0783583Z ** R 2021-05-16T23:17:55.0952328Z ** inst 2021-05-16T23:17:55.0984567Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:17:56.7294818Z ** help 2021-05-16T23:17:56.8044633Z *** installing help indices 2021-05-16T23:17:56.8590963Z *** copying figures 2021-05-16T23:17:56.8593680Z ** building package indices 2021-05-16T23:17:57.1009393Z ** installing vignettes 2021-05-16T23:17:57.1092021Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:17:57.4390661Z ** testing if installed package can be loaded from final location 2021-05-16T23:17:57.7880431Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:17:57.7907564Z * DONE (pillar) 2021-05-16T23:17:58.0784523Z * installing *source* package ‘callr’ ... 2021-05-16T23:17:58.0816724Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-16T23:17:58.0817949Z ** using staged installation 2021-05-16T23:17:58.0972454Z ** R 2021-05-16T23:17:58.1110164Z ** inst 2021-05-16T23:17:58.1118388Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:01.6005294Z ** help 2021-05-16T23:18:01.7285878Z *** installing help indices 2021-05-16T23:18:01.8053953Z ** building package indices 2021-05-16T23:18:02.0839648Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:02.3039873Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:02.5947102Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:02.5978937Z * DONE (callr) 2021-05-16T23:18:03.1081940Z * installing *source* package ‘knitr’ ... 2021-05-16T23:18:03.1204767Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:03.1206186Z ** using staged installation 2021-05-16T23:18:03.1587814Z ** R 2021-05-16T23:18:03.1999074Z ** demo 2021-05-16T23:18:03.2005013Z ** inst 2021-05-16T23:18:03.2110282Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:07.3923044Z ** help 2021-05-16T23:18:07.5947438Z *** installing help indices 2021-05-16T23:18:07.7239082Z ** building package indices 2021-05-16T23:18:08.0474970Z ** installing vignettes 2021-05-16T23:18:08.0556026Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:08.2479431Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:08.5333076Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:08.5396063Z * DONE (knitr) 2021-05-16T23:18:08.7398372Z * installing *source* package ‘xopen’ ... 2021-05-16T23:18:08.7410623Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:08.7414125Z ** using staged installation 2021-05-16T23:18:08.7542362Z ** R 2021-05-16T23:18:08.7563801Z ** inst 2021-05-16T23:18:08.7574360Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:08.9828125Z ** help 2021-05-16T23:18:08.9955670Z *** installing help indices 2021-05-16T23:18:09.0185174Z ** building package indices 2021-05-16T23:18:09.2157166Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:09.3885706Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:09.5603879Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:09.5608538Z * DONE (xopen) 2021-05-16T23:18:09.9284921Z * installing *source* package ‘tibble’ ... 2021-05-16T23:18:09.9369331Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:09.9371193Z ** using staged installation 2021-05-16T23:18:09.9545214Z ** libs 2021-05-16T23:18:09.9608180Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-16T23:18:10.0079619Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-16T23:18:10.0781677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:18:10.1110632Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-16T23:18:10.2041350Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:18:10.2275559Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-16T23:18:10.2279258Z ** R 2021-05-16T23:18:10.2422762Z ** inst 2021-05-16T23:18:10.2448744Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:11.8432094Z ** help 2021-05-16T23:18:11.9125689Z *** installing help indices 2021-05-16T23:18:11.9576929Z *** copying figures 2021-05-16T23:18:11.9580581Z ** building package indices 2021-05-16T23:18:12.1795103Z ** installing vignettes 2021-05-16T23:18:12.1854178Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:12.5090624Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:18:12.5267243Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:12.8844633Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:12.8865104Z * DONE (tibble) 2021-05-16T23:18:13.1339858Z * installing *source* package ‘pkgbuild’ ... 2021-05-16T23:18:13.1364838Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:13.1366046Z ** using staged installation 2021-05-16T23:18:13.1491648Z ** R 2021-05-16T23:18:13.1562787Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:14.1873308Z ** help 2021-05-16T23:18:14.2215379Z *** installing help indices 2021-05-16T23:18:14.2521833Z ** building package indices 2021-05-16T23:18:14.4668383Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:14.7030407Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:14.9541782Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:14.9556671Z * DONE (pkgbuild) 2021-05-16T23:18:15.3164352Z * installing *source* package ‘roxygen2’ ... 2021-05-16T23:18:15.3233241Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:15.3235750Z ** using staged installation 2021-05-16T23:18:15.3401902Z ** libs 2021-05-16T23:18:15.3455653Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-16T23:18:19.6611793Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-16T23:18:22.4220906Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-16T23:18:25.2787105Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-16T23:18:28.0939040Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-16T23:18:32.6919271Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-16T23:18:35.6929110Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:18:35.7797793Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-16T23:18:35.7832100Z ** R 2021-05-16T23:18:35.8095753Z ** inst 2021-05-16T23:18:35.8115554Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:39.4187906Z ** help 2021-05-16T23:18:39.4871036Z *** installing help indices 2021-05-16T23:18:39.5346267Z *** copying figures 2021-05-16T23:18:39.5348182Z ** building package indices 2021-05-16T23:18:39.7434881Z ** installing vignettes 2021-05-16T23:18:39.7507850Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:40.0710003Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:18:40.0909886Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:40.4755151Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:40.4795403Z * DONE (roxygen2) 2021-05-16T23:18:40.6846855Z * installing *source* package ‘rematch2’ ... 2021-05-16T23:18:40.6857533Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:40.6859469Z ** using staged installation 2021-05-16T23:18:40.6976070Z ** R 2021-05-16T23:18:40.7015731Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:41.1438179Z ** help 2021-05-16T23:18:41.1717077Z *** installing help indices 2021-05-16T23:18:41.1925284Z ** building package indices 2021-05-16T23:18:41.3861047Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:41.7117482Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:42.0215211Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:42.0219968Z * DONE (rematch2) 2021-05-16T23:18:42.2676046Z * installing *source* package ‘rcmdcheck’ ... 2021-05-16T23:18:42.2696907Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:42.2698294Z ** using staged installation 2021-05-16T23:18:42.2817838Z ** R 2021-05-16T23:18:42.2880512Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:43.3314761Z ** help 2021-05-16T23:18:43.3644558Z *** installing help indices 2021-05-16T23:18:43.3956713Z ** building package indices 2021-05-16T23:18:43.6195770Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:43.9118132Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:44.2110134Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:44.2124138Z * DONE (rcmdcheck) 2021-05-16T23:18:44.4752440Z * installing *source* package ‘waldo’ ... 2021-05-16T23:18:44.4769090Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:44.4770942Z ** using staged installation 2021-05-16T23:18:44.4920337Z ** R 2021-05-16T23:18:44.4977067Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:18:45.1534383Z ** help 2021-05-16T23:18:45.1689975Z *** installing help indices 2021-05-16T23:18:45.1877348Z *** copying figures 2021-05-16T23:18:45.1879597Z ** building package indices 2021-05-16T23:18:45.3801043Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:18:45.6509040Z ** testing if installed package can be loaded from final location 2021-05-16T23:18:45.9054907Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:18:45.9063106Z * DONE (waldo) 2021-05-16T23:18:46.4447623Z * installing *source* package ‘testthat’ ... 2021-05-16T23:18:46.4579816Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-16T23:18:46.4581003Z ** using staged installation 2021-05-16T23:18:46.4817265Z ** libs 2021-05-16T23:18:46.4896554Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:18:46.5405273Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-16T23:18:46.5953713Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-16T23:18:47.3680953Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-16T23:18:47.9553413Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-16T23:19:05.4091484Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:19:05.5641969Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-16T23:19:05.5737208Z ** R 2021-05-16T23:19:05.6073138Z ** inst 2021-05-16T23:19:05.6102327Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:15.5964053Z ** help 2021-05-16T23:19:15.8184717Z *** installing help indices 2021-05-16T23:19:15.9913540Z *** copying figures 2021-05-16T23:19:15.9918271Z ** building package indices 2021-05-16T23:19:16.2834687Z ** installing vignettes 2021-05-16T23:19:16.2936411Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:16.4923486Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:19:16.5155163Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:16.9217218Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:16.9297514Z * DONE (testthat) 2021-05-16T23:19:17.2685881Z * installing *source* package ‘devtools’ ... 2021-05-16T23:19:17.2738937Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-16T23:19:17.2740898Z ** using staged installation 2021-05-16T23:19:17.3020157Z ** R 2021-05-16T23:19:17.3152102Z ** inst 2021-05-16T23:19:17.3163399Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:18.9286818Z ** help 2021-05-16T23:19:19.0411151Z *** installing help indices 2021-05-16T23:19:19.1165100Z *** copying figures 2021-05-16T23:19:19.1167215Z ** building package indices 2021-05-16T23:19:19.4001265Z ** installing vignettes 2021-05-16T23:19:19.4077271Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:20.1029245Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:20.8298316Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:20.8323592Z * DONE (devtools) 2021-05-16T23:19:20.8449967Z 2021-05-16T23:19:20.8453919Z The downloaded source packages are in 2021-05-16T23:19:20.8455470Z ‘/tmp/RtmpqebVZ0/downloaded_packages’ 2021-05-16T23:19:20.9372044Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-16T23:19:21.7298091Z 2021-05-16T23:19:22.0281313Z 2021-05-16T23:19:22.0301262Z checking for file ‘/tmp/RtmpqebVZ0/remotes7316568ad677/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-16T23:19:22.0374301Z 2021-05-16T23:19:22.0376878Z ✔ checking for file ‘/tmp/RtmpqebVZ0/remotes7316568ad677/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-16T23:19:22.0403816Z 2021-05-16T23:19:22.0427411Z 2021-05-16T23:19:22.0430289Z ─ preparing ‘desc’: 2021-05-16T23:19:22.0439321Z 2021-05-16T23:19:22.0441419Z 2021-05-16T23:19:22.0546094Z checking DESCRIPTION meta-information ... 2021-05-16T23:19:22.0571939Z 2021-05-16T23:19:22.0574179Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:19:22.1278566Z 2021-05-16T23:19:22.1322678Z 2021-05-16T23:19:22.1327097Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:19:22.1343086Z 2021-05-16T23:19:22.1490052Z 2021-05-16T23:19:22.1492428Z ─ checking for empty or unneeded directories 2021-05-16T23:19:22.1495576Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T23:19:22.1505968Z 2021-05-16T23:19:22.1529978Z 2021-05-16T23:19:22.1531953Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-16T23:19:22.2516225Z 2021-05-16T23:19:22.2520795Z 2021-05-16T23:19:22.2523327Z 2021-05-16T23:19:22.2627034Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:19:22.2628454Z (as ‘lib’ is unspecified) 2021-05-16T23:19:22.5878240Z * installing *source* package ‘desc’ ... 2021-05-16T23:19:22.5915216Z ** using staged installation 2021-05-16T23:19:22.6082633Z ** R 2021-05-16T23:19:22.6222975Z ** inst 2021-05-16T23:19:22.6237884Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:24.1192899Z ** help 2021-05-16T23:19:24.2520645Z *** installing help indices 2021-05-16T23:19:24.3490646Z ** building package indices 2021-05-16T23:19:24.6237707Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:24.8104043Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:25.0174371Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:25.0189925Z * DONE (desc) 2021-05-16T23:19:25.2108800Z 2021-05-16T23:19:25.2109896Z 2021-05-16T23:19:25.2112037Z checking for file ‘/tmp/RtmpqebVZ0/remotes73166752682b/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-16T23:19:25.2143569Z 2021-05-16T23:19:25.2145006Z ✔ checking for file ‘/tmp/RtmpqebVZ0/remotes73166752682b/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-16T23:19:25.2232163Z 2021-05-16T23:19:25.2232826Z 2021-05-16T23:19:25.2233605Z ─ preparing ‘ghtravis’: 2021-05-16T23:19:25.2234165Z 2021-05-16T23:19:25.2234559Z 2021-05-16T23:19:25.2304853Z checking DESCRIPTION meta-information ... 2021-05-16T23:19:25.2345373Z 2021-05-16T23:19:25.2347098Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:19:25.2653549Z 2021-05-16T23:19:25.2682918Z 2021-05-16T23:19:25.2685421Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:19:25.2694818Z 2021-05-16T23:19:25.2719569Z 2021-05-16T23:19:25.2721853Z ─ checking for empty or unneeded directories 2021-05-16T23:19:25.2725118Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T23:19:25.2777867Z 2021-05-16T23:19:25.2799467Z 2021-05-16T23:19:25.2801360Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-16T23:19:25.3005612Z 2021-05-16T23:19:25.3008048Z 2021-05-16T23:19:25.3009533Z 2021-05-16T23:19:25.3345811Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:19:25.3347284Z (as ‘lib’ is unspecified) 2021-05-16T23:19:25.5646063Z * installing *source* package ‘ghtravis’ ... 2021-05-16T23:19:25.5648921Z ** using staged installation 2021-05-16T23:19:25.5770313Z ** R 2021-05-16T23:19:25.5849176Z ** inst 2021-05-16T23:19:25.5856670Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:26.7174352Z ** help 2021-05-16T23:19:26.7735487Z *** installing help indices 2021-05-16T23:19:26.8150255Z ** building package indices 2021-05-16T23:19:27.0468690Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:27.6904022Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:28.2761418Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:28.2769945Z * DONE (ghtravis) 2021-05-16T23:19:28.2845351Z Using github PAT from envvar GITHUB_PAT 2021-05-16T23:19:28.4354720Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-16T23:19:29.2569788Z 2021-05-16T23:19:29.2571995Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-16T23:19:29.2574465Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-16T23:19:29.2576083Z generics (NA -> 0.1.0) [CRAN] 2021-05-16T23:19:29.2577582Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-16T23:19:29.2579027Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-16T23:19:29.2580771Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:19:29.2582585Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-16T23:19:29.2588657Z (as ‘lib’ is unspecified) 2021-05-16T23:19:43.3589431Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-16T23:19:43.7527837Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-16T23:19:43.7629054Z ================================================== 2021-05-16T23:19:43.7629866Z downloaded 89 KB 2021-05-16T23:19:43.7630471Z 2021-05-16T23:19:43.7667418Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-16T23:19:44.0427093Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-16T23:19:44.0532721Z ================================================== 2021-05-16T23:19:44.0533237Z downloaded 116 KB 2021-05-16T23:19:44.0533536Z 2021-05-16T23:19:44.0579261Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-16T23:19:44.7829128Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-16T23:19:44.7830618Z ================================================== 2021-05-16T23:19:44.7831527Z downloaded 195 KB 2021-05-16T23:19:44.7832069Z 2021-05-16T23:19:44.7834884Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-16T23:19:44.7837587Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-16T23:19:44.7920777Z ================================================== 2021-05-16T23:19:44.7921797Z downloaded 932 KB 2021-05-16T23:19:44.7922364Z 2021-05-16T23:19:44.7963862Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-16T23:19:45.0311145Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-16T23:19:45.0560785Z ================================================== 2021-05-16T23:19:45.0561343Z downloaded 690 KB 2021-05-16T23:19:45.0561652Z 2021-05-16T23:19:45.3307813Z * installing *source* package ‘tidyselect’ ... 2021-05-16T23:19:45.3344796Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-16T23:19:45.3346295Z ** using staged installation 2021-05-16T23:19:45.3499080Z ** R 2021-05-16T23:19:45.3594291Z ** inst 2021-05-16T23:19:45.3606018Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:46.3030559Z ** help 2021-05-16T23:19:46.3592486Z *** installing help indices 2021-05-16T23:19:46.4010484Z ** building package indices 2021-05-16T23:19:46.6214053Z ** installing vignettes 2021-05-16T23:19:46.6277276Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:46.8964890Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:47.1613404Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:47.1632308Z * DONE (tidyselect) 2021-05-16T23:19:47.4547983Z * installing *source* package ‘generics’ ... 2021-05-16T23:19:47.4579382Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-16T23:19:47.4583098Z ** using staged installation 2021-05-16T23:19:47.4741251Z ** R 2021-05-16T23:19:47.4795083Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:47.7912618Z ** help 2021-05-16T23:19:47.9062016Z *** installing help indices 2021-05-16T23:19:47.9504397Z ** building package indices 2021-05-16T23:19:48.1916080Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:48.3820869Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:48.5604820Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:48.5609491Z * DONE (generics) 2021-05-16T23:19:48.8209998Z * installing *source* package ‘cpp11’ ... 2021-05-16T23:19:48.8243905Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-16T23:19:48.8246307Z ** using staged installation 2021-05-16T23:19:48.8536952Z ** R 2021-05-16T23:19:48.8537575Z ** inst 2021-05-16T23:19:48.8538600Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:49.2308605Z ** help 2021-05-16T23:19:49.2520460Z *** installing help indices 2021-05-16T23:19:49.2699783Z ** building package indices 2021-05-16T23:19:49.4690515Z ** installing vignettes 2021-05-16T23:19:49.4746634Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:49.6491065Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:49.8255743Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:49.8264466Z * DONE (cpp11) 2021-05-16T23:19:50.2959292Z * installing *source* package ‘dplyr’ ... 2021-05-16T23:19:50.3076180Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-16T23:19:50.3079251Z ** using staged installation 2021-05-16T23:19:50.3273516Z ** libs 2021-05-16T23:19:50.3320040Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-16T23:19:50.4762235Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-16T23:19:50.6358865Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-16T23:19:50.7615334Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-16T23:19:51.3243520Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-16T23:19:51.4406346Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-16T23:19:51.5591404Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-16T23:19:51.6805733Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-16T23:19:51.8165369Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-16T23:19:51.9457931Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-16T23:19:52.0433297Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-16T23:19:52.2240937Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:19:52.2888750Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-16T23:19:52.2906573Z ** R 2021-05-16T23:19:52.3344470Z ** data 2021-05-16T23:19:52.3349382Z *** moving datasets to lazyload DB 2021-05-16T23:19:52.4349853Z ** inst 2021-05-16T23:19:52.4379535Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:19:57.0013437Z ** help 2021-05-16T23:19:57.4818549Z *** installing help indices 2021-05-16T23:19:57.6865908Z *** copying figures 2021-05-16T23:19:57.6869328Z ** building package indices 2021-05-16T23:19:58.0389355Z ** installing vignettes 2021-05-16T23:19:58.0522997Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:19:58.5080058Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:19:58.5255152Z ** testing if installed package can be loaded from final location 2021-05-16T23:19:59.0562619Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:19:59.0610184Z * DONE (dplyr) 2021-05-16T23:19:59.4230887Z * installing *source* package ‘tidyr’ ... 2021-05-16T23:19:59.4306569Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-16T23:19:59.4308394Z ** using staged installation 2021-05-16T23:19:59.4493472Z ** libs 2021-05-16T23:19:59.4558618Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-16T23:20:00.3709061Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-16T23:20:00.6903905Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-16T23:20:02.3508896Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-16T23:20:03.5901565Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:20:03.6585764Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-16T23:20:03.6607052Z ** R 2021-05-16T23:20:03.6763824Z ** data 2021-05-16T23:20:03.6777430Z *** moving datasets to lazyload DB 2021-05-16T23:20:03.8614714Z ** inst 2021-05-16T23:20:03.8636037Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:20:05.3434819Z ** help 2021-05-16T23:20:05.4507054Z *** installing help indices 2021-05-16T23:20:05.5159676Z *** copying figures 2021-05-16T23:20:05.5164130Z ** building package indices 2021-05-16T23:20:05.7547688Z ** installing vignettes 2021-05-16T23:20:05.7656533Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:20:06.1993312Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:20:06.2179058Z ** testing if installed package can be loaded from final location 2021-05-16T23:20:06.6766854Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:20:06.6783507Z * DONE (tidyr) 2021-05-16T23:20:06.6874886Z 2021-05-16T23:20:06.6875610Z The downloaded source packages are in 2021-05-16T23:20:06.6879671Z ‘/tmp/RtmpqebVZ0/downloaded_packages’ 2021-05-16T23:20:06.8770108Z 2021-05-16T23:20:06.8773510Z checking for file ‘/tmp/RtmpqebVZ0/remotes73163bef3d76/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-16T23:20:06.8807356Z 2021-05-16T23:20:06.8809391Z ✔ checking for file ‘/tmp/RtmpqebVZ0/remotes73163bef3d76/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-16T23:20:06.8820331Z 2021-05-16T23:20:06.8837733Z 2021-05-16T23:20:06.8839486Z ─ preparing ‘aghast’: 2021-05-16T23:20:06.8846337Z 2021-05-16T23:20:06.8847924Z 2021-05-16T23:20:06.8921025Z checking DESCRIPTION meta-information ... 2021-05-16T23:20:06.8937478Z 2021-05-16T23:20:06.8938995Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:20:06.9161155Z 2021-05-16T23:20:06.9184010Z 2021-05-16T23:20:06.9186386Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:20:06.9194464Z 2021-05-16T23:20:06.9214394Z 2021-05-16T23:20:06.9216343Z ─ checking for empty or unneeded directories 2021-05-16T23:20:06.9219485Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-16T23:20:06.9229938Z 2021-05-16T23:20:06.9247528Z 2021-05-16T23:20:06.9249452Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-16T23:20:06.9326343Z 2021-05-16T23:20:06.9327923Z 2021-05-16T23:20:06.9328881Z 2021-05-16T23:20:06.9414754Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:20:06.9415654Z (as ‘lib’ is unspecified) 2021-05-16T23:20:07.1323914Z * installing *source* package ‘aghast’ ... 2021-05-16T23:20:07.1326168Z ** using staged installation 2021-05-16T23:20:07.1476673Z ** R 2021-05-16T23:20:07.1533098Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:20:07.5721609Z ** help 2021-05-16T23:20:07.6038064Z *** installing help indices 2021-05-16T23:20:07.6256189Z ** building package indices 2021-05-16T23:20:07.8301149Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:20:07.9981799Z ** testing if installed package can be loaded from final location 2021-05-16T23:20:08.1808761Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:20:08.1814053Z * DONE (aghast) 2021-05-16T23:20:08.1889343Z Installing 1 packages: covr 2021-05-16T23:20:08.1895156Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:20:08.1895975Z (as ‘lib’ is unspecified) 2021-05-16T23:20:21.5236068Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-16T23:20:21.5237231Z 2021-05-16T23:20:21.5240322Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-16T23:20:21.7944721Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-16T23:20:21.8004582Z ================================================== 2021-05-16T23:20:21.8005295Z downloaded 81 KB 2021-05-16T23:20:21.8005804Z 2021-05-16T23:20:21.8036873Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-16T23:20:22.7939486Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-16T23:20:22.7951097Z ================================================== 2021-05-16T23:20:22.7952483Z downloaded 89 KB 2021-05-16T23:20:22.7953242Z 2021-05-16T23:20:22.7955512Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-16T23:20:22.7957699Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-16T23:20:22.7958652Z ================================================== 2021-05-16T23:20:22.7959297Z downloaded 144 KB 2021-05-16T23:20:22.7959770Z 2021-05-16T23:20:22.8742765Z * installing *source* package ‘lazyeval’ ... 2021-05-16T23:20:22.8770329Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-16T23:20:22.8771969Z ** using staged installation 2021-05-16T23:20:22.8899644Z ** libs 2021-05-16T23:20:22.8965427Z 2021-05-16T23:20:22.8966916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-16T23:20:22.9593118Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:20:22.9995568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-16T23:20:23.0655429Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-16T23:20:23.1463947Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-16T23:20:23.2151408Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-16T23:20:23.2895853Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:20:23.3157847Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-16T23:20:23.3172943Z ** R 2021-05-16T23:20:23.3242713Z ** inst 2021-05-16T23:20:23.3257695Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:20:23.8224785Z ** help 2021-05-16T23:20:23.8752579Z *** installing help indices 2021-05-16T23:20:23.9179571Z ** building package indices 2021-05-16T23:20:24.1528790Z ** installing vignettes 2021-05-16T23:20:24.1600591Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:20:24.3412067Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:20:24.3586460Z ** testing if installed package can be loaded from final location 2021-05-16T23:20:24.5312979Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:20:24.5320639Z * DONE (lazyeval) 2021-05-16T23:20:24.7542799Z * installing *source* package ‘rex’ ... 2021-05-16T23:20:24.7564058Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-16T23:20:24.7566021Z ** using staged installation 2021-05-16T23:20:24.7682056Z ** R 2021-05-16T23:20:24.7734052Z ** inst 2021-05-16T23:20:24.7745260Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:20:25.2511787Z ** help 2021-05-16T23:20:25.3041162Z *** installing help indices 2021-05-16T23:20:25.3436334Z ** building package indices 2021-05-16T23:20:25.5645466Z ** installing vignettes 2021-05-16T23:20:25.5733059Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:20:25.7329492Z ** testing if installed package can be loaded from final location 2021-05-16T23:20:25.9130402Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:20:25.9139723Z * DONE (rex) 2021-05-16T23:20:26.2479047Z * installing *source* package ‘covr’ ... 2021-05-16T23:20:26.2529368Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-16T23:20:26.2531445Z ** using staged installation 2021-05-16T23:20:26.2707220Z ** libs 2021-05-16T23:20:26.2757606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-16T23:20:26.3309921Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:20:26.3456599Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-16T23:20:26.3470095Z ** R 2021-05-16T23:20:26.3609842Z ** inst 2021-05-16T23:20:26.3633623Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:20:27.5110695Z ** help 2021-05-16T23:20:27.5669213Z *** installing help indices 2021-05-16T23:20:27.6075825Z *** copying figures 2021-05-16T23:20:27.6077684Z ** building package indices 2021-05-16T23:20:27.8113535Z ** installing vignettes 2021-05-16T23:20:27.8178880Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:20:28.0046392Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:20:28.0224872Z ** testing if installed package can be loaded from final location 2021-05-16T23:20:28.2502547Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:20:28.2527344Z * DONE (covr) 2021-05-16T23:20:28.2629439Z 2021-05-16T23:20:28.2630222Z The downloaded source packages are in 2021-05-16T23:20:28.2632299Z ‘/tmp/RtmpqebVZ0/downloaded_packages’ 2021-05-16T23:20:28.2763756Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-16T23:20:28.2764409Z Rscript -e "tic::before_install()" 2021-05-16T23:20:28.2805757Z shell: /usr/bin/bash -e {0} 2021-05-16T23:20:28.2806216Z env: 2021-05-16T23:20:28.2806726Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:20:28.2807313Z TIC_DEPLOY_KEY: 2021-05-16T23:20:28.2808060Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:20:28.2809641Z GITHUB_PAT: *** 2021-05-16T23:20:28.2810011Z COVERALLS_TOKEN: 2021-05-16T23:20:28.2810443Z continue-on-error: true 2021-05-16T23:20:28.2810873Z VDIFFR_RUN_TESTS: 2021-05-16T23:20:28.2811306Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:20:28.2811713Z TZ: UTC 2021-05-16T23:20:28.2812072Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:20:28.2812435Z NOT_CRAN: true 2021-05-16T23:20:28.2812787Z ##[endgroup] 2021-05-16T23:20:28.5447409Z ✔ Loading tic stage configuration from tic.R 2021-05-16T23:20:28.6599909Z Running before_install: step_install_remote_binaries() 2021-05-16T23:20:29.1408092Z Installing kirby21.t1 binaries 2021-05-16T23:20:29.1418254Z [1] "neuroconductor/kirby21.t1" 2021-05-16T23:20:29.3505645Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-16T23:20:29.3512150Z Installing oro.nifti binaries 2021-05-16T23:20:29.3520194Z [1] "neuroconductor/oro.nifti" 2021-05-16T23:20:29.4856541Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-16T23:20:29.4866319Z Installing kirby21.fmri binaries 2021-05-16T23:20:29.4878410Z [1] "neuroconductor/kirby21.fmri" 2021-05-16T23:20:29.6177636Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-16T23:20:29.6188444Z Installing neurobase binaries 2021-05-16T23:20:29.6198518Z [1] "neuroconductor/neurobase" 2021-05-16T23:20:29.7632746Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-16T23:20:29.7762202Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-16T23:20:29.7763018Z remotes::install_deps(dependencies = TRUE) 2021-05-16T23:20:29.7763491Z remotes::install_cran("rcmdcheck") 2021-05-16T23:20:29.7763931Z remotes::install_cran("markdown") 2021-05-16T23:20:29.7769968Z shell: /usr/local/bin/Rscript {0} 2021-05-16T23:20:29.7770314Z env: 2021-05-16T23:20:29.7770652Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:20:29.7771027Z TIC_DEPLOY_KEY: 2021-05-16T23:20:29.7771671Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:20:29.7772920Z GITHUB_PAT: *** 2021-05-16T23:20:29.7773243Z COVERALLS_TOKEN: 2021-05-16T23:20:29.7773614Z continue-on-error: true 2021-05-16T23:20:29.7773990Z VDIFFR_RUN_TESTS: 2021-05-16T23:20:29.7774361Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:20:29.7774716Z TZ: UTC 2021-05-16T23:20:29.7775011Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:20:29.7775372Z NOT_CRAN: true 2021-05-16T23:20:29.7775662Z ##[endgroup] 2021-05-16T23:20:51.9900769Z kirby21.t1 (NA -> d9d2c5888...) [GitHub] 2021-05-16T23:20:51.9903169Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-16T23:20:51.9905122Z kirby21.fmri (NA -> e59273128...) [GitHub] 2021-05-16T23:20:51.9907143Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-16T23:20:51.9909026Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-16T23:20:51.9910706Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-16T23:20:51.9912996Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-16T23:20:51.9915959Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-16T23:20:51.9917724Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-16T23:20:51.9919454Z kirby21.base (NA -> 1.7.3 ) [CRAN] 2021-05-16T23:20:51.9921193Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-16T23:20:51.9922913Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-16T23:20:52.1488516Z Downloading GitHub repo neuroconductor/kirby21.t1@d9d2c5888aae676ae04f31146111014c589ea26f 2021-05-16T23:20:56.2391156Z kirby21.base (NA -> 05f22dce0...) [GitHub] 2021-05-16T23:20:56.4253074Z Downloading GitHub repo neuroconductor/kirby21.base@05f22dce05785d199035f6a933598c1a9fd9119d 2021-05-16T23:20:57.3936014Z 2021-05-16T23:20:57.7345146Z 2021-05-16T23:20:57.7375266Z checking for file ‘/tmp/Rtmpiz6494/remotesd5313401f9cb/neuroconductor-kirby21.base-05f22dc/DESCRIPTION’ ... 2021-05-16T23:20:57.7424961Z 2021-05-16T23:20:57.7428136Z ✔ checking for file ‘/tmp/Rtmpiz6494/remotesd5313401f9cb/neuroconductor-kirby21.base-05f22dc/DESCRIPTION’ 2021-05-16T23:20:57.7514679Z 2021-05-16T23:20:57.7533169Z 2021-05-16T23:20:57.7535476Z ─ preparing ‘kirby21.base’: 2021-05-16T23:20:57.7539032Z 2021-05-16T23:20:57.7540009Z 2021-05-16T23:20:57.7610884Z checking DESCRIPTION meta-information ... 2021-05-16T23:20:57.7631065Z 2021-05-16T23:20:57.7633279Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:20:57.7914743Z 2021-05-16T23:20:57.7924023Z 2021-05-16T23:20:57.7927344Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:20:57.7938736Z 2021-05-16T23:20:57.7973140Z 2021-05-16T23:20:57.7975186Z ─ checking for empty or unneeded directories 2021-05-16T23:20:57.8000146Z ─ building ‘kirby21.base_1.7.3.tar.gz’ 2021-05-16T23:20:57.8067860Z 2021-05-16T23:20:57.8070206Z 2021-05-16T23:20:57.8071659Z 2021-05-16T23:20:57.8243858Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:20:57.8245072Z (as ‘lib’ is unspecified) 2021-05-16T23:20:58.0537330Z * installing *source* package ‘kirby21.base’ ... 2021-05-16T23:20:58.0539800Z ** using staged installation 2021-05-16T23:20:58.0701258Z ** R 2021-05-16T23:20:58.0806074Z ** data 2021-05-16T23:20:58.0810408Z *** moving datasets to lazyload DB 2021-05-16T23:20:58.0880480Z ** inst 2021-05-16T23:20:58.0888104Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:20:58.4914710Z ** help 2021-05-16T23:20:58.5129399Z *** installing help indices 2021-05-16T23:20:58.5363772Z ** building package indices 2021-05-16T23:20:58.7538470Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:20:58.9674682Z ** testing if installed package can be loaded from final location 2021-05-16T23:20:59.1789819Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:20:59.1797268Z * DONE (kirby21.base) 2021-05-16T23:20:59.2587182Z Skipping install of 'kirby21.base' from a github remote, the SHA1 (05f22dce) has not changed since last install. 2021-05-16T23:20:59.2589066Z Use `force = TRUE` to force installation 2021-05-16T23:20:59.4422159Z 2021-05-16T23:20:59.4423599Z 2021-05-16T23:20:59.4426903Z checking for file ‘/tmp/Rtmpiz6494/remotesd531396edea1/neuroconductor-kirby21.t1-d9d2c58/DESCRIPTION’ ... 2021-05-16T23:20:59.4492318Z 2021-05-16T23:20:59.4495163Z ✔ checking for file ‘/tmp/Rtmpiz6494/remotesd531396edea1/neuroconductor-kirby21.t1-d9d2c58/DESCRIPTION’ 2021-05-16T23:20:59.4863127Z 2021-05-16T23:20:59.4891192Z 2021-05-16T23:20:59.4893652Z ─ preparing ‘kirby21.t1’: 2021-05-16T23:20:59.4916269Z checking DESCRIPTION meta-information ... 2021-05-16T23:20:59.4937911Z 2021-05-16T23:20:59.4939935Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:20:59.5176484Z 2021-05-16T23:20:59.5198931Z 2021-05-16T23:20:59.5201168Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:20:59.5209954Z 2021-05-16T23:20:59.5230469Z 2021-05-16T23:20:59.5232498Z ─ checking for empty or unneeded directories 2021-05-16T23:20:59.5240133Z 2021-05-16T23:20:59.5263642Z 2021-05-16T23:20:59.5265370Z ─ building ‘kirby21.t1_1.7.3.2.tar.gz’ 2021-05-16T23:20:59.5289555Z 2021-05-16T23:20:59.5291779Z 2021-05-16T23:20:59.5293129Z 2021-05-16T23:20:59.5744694Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:20:59.5747186Z (as ‘lib’ is unspecified) 2021-05-16T23:20:59.8103330Z * installing *source* package ‘kirby21.t1’ ... 2021-05-16T23:20:59.8106422Z ** using staged installation 2021-05-16T23:20:59.8263592Z ** R 2021-05-16T23:20:59.8295214Z ** inst 2021-05-16T23:20:59.8302827Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:00.0706569Z ** help 2021-05-16T23:21:00.0851308Z *** installing help indices 2021-05-16T23:21:00.1098405Z ** building package indices 2021-05-16T23:21:00.3120263Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:00.5090113Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:00.7075910Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:00.7081096Z * DONE (kirby21.t1) 2021-05-16T23:21:00.9632807Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-16T23:21:03.3076006Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-16T23:21:03.3076650Z 2021-05-16T23:21:03.3077671Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-16T23:21:03.3078313Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-16T23:21:03.3078916Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-16T23:21:03.3079489Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-16T23:21:03.3080085Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-16T23:21:03.3080657Z rticles (NA -> 0.19 ) [CRAN] 2021-05-16T23:21:03.3081226Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-16T23:21:03.3081786Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-16T23:21:03.7084980Z 2021-05-16T23:21:03.8909077Z 2021-05-16T23:21:03.8919748Z checking for file ‘/tmp/Rtmpiz6494/remotesd5312af34fa6/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-16T23:21:03.8944093Z 2021-05-16T23:21:03.8946428Z ✔ checking for file ‘/tmp/Rtmpiz6494/remotesd5312af34fa6/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-16T23:21:03.9100109Z 2021-05-16T23:21:03.9100971Z 2021-05-16T23:21:03.9102009Z ─ preparing ‘RNifti’: 2021-05-16T23:21:03.9102539Z 2021-05-16T23:21:03.9103034Z 2021-05-16T23:21:03.9222009Z checking DESCRIPTION meta-information ... 2021-05-16T23:21:03.9244394Z 2021-05-16T23:21:03.9246446Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:21:03.9253954Z 2021-05-16T23:21:03.9276968Z 2021-05-16T23:21:03.9278898Z ─ cleaning src 2021-05-16T23:21:03.9286219Z 2021-05-16T23:21:03.9306926Z 2021-05-16T23:21:03.9308757Z ─ running ‘cleanup’ 2021-05-16T23:21:03.9777287Z 2021-05-16T23:21:03.9816675Z 2021-05-16T23:21:03.9820310Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:21:04.0227063Z 2021-05-16T23:21:04.0258723Z 2021-05-16T23:21:04.0261870Z ─ checking for empty or unneeded directories 2021-05-16T23:21:04.0275780Z 2021-05-16T23:21:04.0307977Z 2021-05-16T23:21:04.0310790Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-16T23:21:04.3065261Z 2021-05-16T23:21:04.3069888Z 2021-05-16T23:21:04.3072386Z 2021-05-16T23:21:04.3200153Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:21:04.3201105Z (as ‘lib’ is unspecified) 2021-05-16T23:21:04.6562099Z * installing *source* package ‘RNifti’ ... 2021-05-16T23:21:04.6564259Z ** using staged installation 2021-05-16T23:21:04.6718573Z ** libs 2021-05-16T23:21:04.6789909Z 2021-05-16T23:21:04.6794053Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-16T23:21:23.5557941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-16T23:21:23.6602438Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-16T23:21:23.7554414Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-16T23:21:23.8019327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-16T23:21:23.9248860Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-16T23:21:24.4506949Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-16T23:21:24.4981211Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-16T23:21:25.3155327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-16T23:21:25.3161849Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-16T23:21:25.3167655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-16T23:21:25.3173155Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-16T23:21:25.3178647Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-16T23:21:25.7032913Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-16T23:21:25.8071153Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-16T23:21:26.1344892Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-16T23:21:26.1758229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-16T23:21:26.2260167Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-16T23:21:26.3131749Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-16T23:21:27.4055939Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-16T23:21:29.8564802Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:21:30.0399337Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-16T23:21:30.0524147Z ** R 2021-05-16T23:21:30.0611769Z ** inst 2021-05-16T23:21:30.0641899Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:30.8158298Z ** help 2021-05-16T23:21:30.8720294Z *** installing help indices 2021-05-16T23:21:30.9081974Z ** building package indices 2021-05-16T23:21:31.1634879Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:31.4539961Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:21:31.4813007Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:31.7738387Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:31.7749500Z * DONE (RNifti) 2021-05-16T23:21:31.7912956Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-16T23:21:31.7922951Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:21:31.7924085Z (as ‘lib’ is unspecified) 2021-05-16T23:21:46.2721649Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-16T23:21:46.5937345Z Content type 'application/x-tar' length 7843 bytes 2021-05-16T23:21:46.5939463Z ================================================== 2021-05-16T23:21:46.5940729Z downloaded 7843 bytes 2021-05-16T23:21:46.5941672Z 2021-05-16T23:21:46.5989237Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-16T23:21:46.8737974Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-16T23:21:46.8746751Z ================================================== 2021-05-16T23:21:46.8747688Z downloaded 28 KB 2021-05-16T23:21:46.8748249Z 2021-05-16T23:21:46.8782955Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-16T23:21:47.1868337Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-16T23:21:47.1921445Z ================================================== 2021-05-16T23:21:47.1922432Z downloaded 70 KB 2021-05-16T23:21:47.1923069Z 2021-05-16T23:21:47.1975875Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-16T23:21:47.4759379Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-16T23:21:47.5381622Z ================================================== 2021-05-16T23:21:47.5382085Z downloaded 3.1 MB 2021-05-16T23:21:47.5382313Z 2021-05-16T23:21:47.5416080Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-16T23:21:47.8306805Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-16T23:21:47.8601370Z ================================================== 2021-05-16T23:21:47.8602060Z downloaded 1.6 MB 2021-05-16T23:21:47.8602485Z 2021-05-16T23:21:47.8637860Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-16T23:21:48.1437008Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-16T23:21:48.1439315Z ================================================== 2021-05-16T23:21:48.1440961Z downloaded 21 KB 2021-05-16T23:21:48.1441864Z 2021-05-16T23:21:48.1489295Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-16T23:21:48.4263460Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-16T23:21:48.4264743Z ================================================== 2021-05-16T23:21:48.4265573Z downloaded 10 KB 2021-05-16T23:21:48.4266129Z 2021-05-16T23:21:48.6106683Z * installing *source* package ‘base64enc’ ... 2021-05-16T23:21:48.6116208Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-16T23:21:48.6119462Z ** using staged installation 2021-05-16T23:21:48.6209657Z ** libs 2021-05-16T23:21:48.6269224Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-16T23:21:48.7256501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-16T23:21:48.7957926Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-16T23:21:48.8680722Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:21:48.8880890Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-16T23:21:48.8897869Z ** R 2021-05-16T23:21:48.8927764Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:49.1283843Z ** help 2021-05-16T23:21:49.1487901Z *** installing help indices 2021-05-16T23:21:49.1642473Z ** building package indices 2021-05-16T23:21:49.3431956Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:49.5111578Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:21:49.5278986Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:49.6924971Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:49.6934825Z * DONE (base64enc) 2021-05-16T23:21:49.9066012Z * installing *source* package ‘tinytex’ ... 2021-05-16T23:21:49.9078832Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-16T23:21:49.9079572Z ** using staged installation 2021-05-16T23:21:49.9250601Z ** R 2021-05-16T23:21:49.9317241Z ** inst 2021-05-16T23:21:49.9323878Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:50.5695270Z ** help 2021-05-16T23:21:50.6003285Z *** installing help indices 2021-05-16T23:21:50.6240707Z ** building package indices 2021-05-16T23:21:50.8159328Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:50.9981936Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:51.1904160Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:51.1915771Z * DONE (tinytex) 2021-05-16T23:21:51.3975947Z * installing *source* package ‘abind’ ... 2021-05-16T23:21:51.3991798Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-16T23:21:51.3994993Z ** using staged installation 2021-05-16T23:21:51.4097896Z ** R 2021-05-16T23:21:51.4151399Z ** inst 2021-05-16T23:21:51.4161819Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:51.9794897Z ** help 2021-05-16T23:21:52.0064095Z *** installing help indices 2021-05-16T23:21:52.0294892Z ** building package indices 2021-05-16T23:21:52.2429596Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:52.4074666Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:52.5824529Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:52.5841074Z * DONE (abind) 2021-05-16T23:21:52.7708487Z * installing *source* package ‘bitops’ ... 2021-05-16T23:21:52.7719369Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-16T23:21:52.7722878Z ** using staged installation 2021-05-16T23:21:52.7807883Z ** libs 2021-05-16T23:21:52.7863915Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-16T23:21:52.9585286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-16T23:21:53.0208668Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:21:53.0683759Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:21:53.0854719Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-16T23:21:53.0874626Z ** R 2021-05-16T23:21:53.0896393Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:53.3078715Z ** help 2021-05-16T23:21:53.3335948Z *** installing help indices 2021-05-16T23:21:53.3506712Z ** building package indices 2021-05-16T23:21:53.5333319Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:53.6964834Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:21:53.7147008Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:53.8815991Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:53.8820745Z * DONE (bitops) 2021-05-16T23:21:54.1242564Z * installing *source* package ‘htmltools’ ... 2021-05-16T23:21:54.1259565Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-16T23:21:54.1261477Z ** using staged installation 2021-05-16T23:21:54.1398231Z ** libs 2021-05-16T23:21:54.1448957Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:21:54.1898917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-16T23:21:54.2982029Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:21:54.3189635Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-16T23:21:54.3205841Z ** R 2021-05-16T23:21:54.3323866Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:55.5234931Z ** help 2021-05-16T23:21:55.5883295Z *** installing help indices 2021-05-16T23:21:55.6389880Z ** building package indices 2021-05-16T23:21:55.8672701Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:21:56.0564668Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:21:56.0740589Z ** testing if installed package can be loaded from final location 2021-05-16T23:21:56.2976029Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:21:56.2993527Z * DONE (htmltools) 2021-05-16T23:21:56.9956381Z * installing *source* package ‘rmarkdown’ ... 2021-05-16T23:21:57.0234388Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-16T23:21:57.0235899Z ** using staged installation 2021-05-16T23:21:57.0491703Z ** R 2021-05-16T23:21:57.0855086Z ** inst 2021-05-16T23:21:57.1052046Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:21:59.9569586Z ** help 2021-05-16T23:22:00.1638283Z *** installing help indices 2021-05-16T23:22:00.2983975Z *** copying figures 2021-05-16T23:22:00.2986080Z ** building package indices 2021-05-16T23:22:00.5942309Z ** installing vignettes 2021-05-16T23:22:00.6020499Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:22:00.8364888Z ** testing if installed package can be loaded from final location 2021-05-16T23:22:01.1345959Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:22:01.1401075Z * DONE (rmarkdown) 2021-05-16T23:22:01.6944817Z * installing *source* package ‘rticles’ ... 2021-05-16T23:22:01.7137921Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-16T23:22:01.7139558Z ** using staged installation 2021-05-16T23:22:01.7349188Z ** R 2021-05-16T23:22:01.7414331Z ** inst 2021-05-16T23:22:01.7674173Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:22:02.1972254Z ** help 2021-05-16T23:22:02.2363283Z *** installing help indices 2021-05-16T23:22:02.2694568Z ** building package indices 2021-05-16T23:22:02.4756108Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:22:02.7094263Z ** testing if installed package can be loaded from final location 2021-05-16T23:22:02.9373483Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:22:02.9411603Z * DONE (rticles) 2021-05-16T23:22:02.9551559Z 2021-05-16T23:22:02.9552661Z The downloaded source packages are in 2021-05-16T23:22:02.9554338Z ‘/tmp/Rtmpiz6494/downloaded_packages’ 2021-05-16T23:22:03.0463161Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-16T23:22:03.0464934Z Use `force = TRUE` to force installation 2021-05-16T23:22:03.2449490Z 2021-05-16T23:22:03.2462640Z checking for file ‘/tmp/Rtmpiz6494/remotesd531243ff6e3/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-16T23:22:03.2565886Z 2021-05-16T23:22:03.2567811Z ✔ checking for file ‘/tmp/Rtmpiz6494/remotesd531243ff6e3/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-16T23:22:03.2711483Z 2021-05-16T23:22:03.2712203Z 2021-05-16T23:22:03.2713169Z ─ preparing ‘oro.nifti’: 2021-05-16T23:22:03.2713651Z 2021-05-16T23:22:03.2714434Z 2021-05-16T23:22:03.2820439Z checking DESCRIPTION meta-information ... 2021-05-16T23:22:03.2841156Z 2021-05-16T23:22:03.2842936Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:22:03.4096113Z 2021-05-16T23:22:03.4120196Z 2021-05-16T23:22:03.4122947Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:22:03.4130150Z 2021-05-16T23:22:03.4147031Z 2021-05-16T23:22:03.4148829Z ─ checking for empty or unneeded directories 2021-05-16T23:22:03.4151420Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-16T23:22:03.4157981Z 2021-05-16T23:22:03.4159811Z 2021-05-16T23:22:03.4162179Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-16T23:22:03.4260837Z 2021-05-16T23:22:03.4281873Z 2021-05-16T23:22:03.4283687Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-16T23:22:03.9086107Z 2021-05-16T23:22:03.9088342Z 2021-05-16T23:22:03.9089870Z 2021-05-16T23:22:03.9246579Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:22:03.9247260Z (as ‘lib’ is unspecified) 2021-05-16T23:22:04.4385413Z * installing *source* package ‘oro.nifti’ ... 2021-05-16T23:22:04.4389208Z ** using staged installation 2021-05-16T23:22:04.4577160Z ** R 2021-05-16T23:22:04.5019034Z ** demo 2021-05-16T23:22:04.5025576Z ** inst 2021-05-16T23:22:04.5088720Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:22:11.1029126Z 2021-05-16T23:22:11.1030329Z ** help 2021-05-16T23:22:11.1031677Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-16T23:22:11.4549191Z *** installing help indices 2021-05-16T23:22:11.6973606Z ** building package indices 2021-05-16T23:22:12.1156113Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:22:12.6646396Z ** testing if installed package can be loaded from final location 2021-05-16T23:22:13.3576800Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:22:13.3651058Z * DONE (oro.nifti) 2021-05-16T23:22:13.5409399Z Downloading GitHub repo neuroconductor/kirby21.fmri@e59273128069905f2da32e9d48864ec7e73c1ad7 2021-05-16T23:22:30.3382274Z 2021-05-16T23:22:30.5308890Z 2021-05-16T23:22:30.5331755Z checking for file ‘/tmp/Rtmpiz6494/remotesd531685caeae/neuroconductor-kirby21.fmri-e592731/DESCRIPTION’ ... 2021-05-16T23:22:30.5346803Z 2021-05-16T23:22:30.5349323Z ✔ checking for file ‘/tmp/Rtmpiz6494/remotesd531685caeae/neuroconductor-kirby21.fmri-e592731/DESCRIPTION’ 2021-05-16T23:22:30.7577333Z 2021-05-16T23:22:30.7578022Z 2021-05-16T23:22:30.7579167Z ─ preparing ‘kirby21.fmri’: 2021-05-16T23:22:30.7579550Z 2021-05-16T23:22:30.7579893Z 2021-05-16T23:22:30.7606282Z checking DESCRIPTION meta-information ... 2021-05-16T23:22:30.7626989Z 2021-05-16T23:22:30.7628095Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:22:30.8364909Z 2021-05-16T23:22:30.8389802Z 2021-05-16T23:22:30.8391322Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:22:30.8416486Z ─ checking for empty or unneeded directories 2021-05-16T23:22:30.8426043Z 2021-05-16T23:22:30.8446222Z 2021-05-16T23:22:30.8447287Z ─ building ‘kirby21.fmri_1.7.0.tar.gz’ 2021-05-16T23:22:30.8471873Z 2021-05-16T23:22:30.8473705Z 2021-05-16T23:22:30.8474181Z 2021-05-16T23:22:31.1122792Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:22:31.1123843Z (as ‘lib’ is unspecified) 2021-05-16T23:22:31.3070240Z * installing *source* package ‘kirby21.fmri’ ... 2021-05-16T23:22:31.3077310Z ** using staged installation 2021-05-16T23:22:31.3234588Z ** R 2021-05-16T23:22:31.3265188Z ** inst 2021-05-16T23:22:31.3275284Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:22:31.5791013Z ** help 2021-05-16T23:22:31.5935431Z *** installing help indices 2021-05-16T23:22:31.6193775Z ** building package indices 2021-05-16T23:22:31.8295778Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:22:32.0552317Z ** testing if installed package can be loaded from final location 2021-05-16T23:22:32.2871492Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:22:32.2880743Z * DONE (kirby21.fmri) 2021-05-16T23:22:32.5506183Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-16T23:22:34.4632417Z 2021-05-16T23:22:34.4634711Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-16T23:22:34.4638284Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-16T23:22:34.4640255Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-16T23:22:34.4642153Z Installing 4 packages: R.methodsS3, R.oo, R.utils, matrixStats 2021-05-16T23:22:34.4643862Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-16T23:22:34.4658199Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:22:34.4659789Z (as ‘lib’ is unspecified) 2021-05-16T23:22:48.8417071Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-16T23:22:49.3631250Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-16T23:22:49.3634963Z ================================================== 2021-05-16T23:22:49.3635451Z downloaded 23 KB 2021-05-16T23:22:49.3635759Z 2021-05-16T23:22:49.3671418Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-16T23:22:50.1221689Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-16T23:22:50.1406338Z ================================================== 2021-05-16T23:22:50.1407741Z downloaded 373 KB 2021-05-16T23:22:50.1408338Z 2021-05-16T23:22:50.1443402Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-16T23:22:50.4188288Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-16T23:22:50.4369825Z ================================================== 2021-05-16T23:22:50.4371167Z downloaded 353 KB 2021-05-16T23:22:50.4372105Z 2021-05-16T23:22:50.4410031Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-16T23:22:50.7432899Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-16T23:22:50.7565042Z ================================================== 2021-05-16T23:22:50.7565868Z downloaded 190 KB 2021-05-16T23:22:50.7566444Z 2021-05-16T23:22:51.0040074Z * installing *source* package ‘R.methodsS3’ ... 2021-05-16T23:22:51.0056197Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-16T23:22:51.0057604Z ** using staged installation 2021-05-16T23:22:51.0190383Z ** R 2021-05-16T23:22:51.0266723Z ** inst 2021-05-16T23:22:51.0273692Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:22:51.4792214Z ** help 2021-05-16T23:22:51.5167986Z *** installing help indices 2021-05-16T23:22:51.5475321Z ** building package indices 2021-05-16T23:22:51.7506428Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:22:51.9207959Z ** testing if installed package can be loaded from final location 2021-05-16T23:22:52.1225033Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:22:52.1241176Z * DONE (R.methodsS3) 2021-05-16T23:22:52.5755712Z * installing *source* package ‘matrixStats’ ... 2021-05-16T23:22:52.5845236Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-16T23:22:52.5846262Z ** using staged installation 2021-05-16T23:22:52.5980837Z ** libs 2021-05-16T23:22:52.6036530Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-16T23:22:52.6442497Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-16T23:22:52.7279381Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-16T23:22:52.8322889Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-16T23:22:52.9206959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-16T23:22:53.0688334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-16T23:22:54.3930373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-16T23:22:54.7807306Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-16T23:22:56.2884009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-16T23:22:56.5203910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-16T23:22:56.5909480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-16T23:22:56.8224996Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-16T23:22:56.9673556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-16T23:22:57.1285768Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-16T23:22:57.1953508Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-16T23:22:58.7692362Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-16T23:22:59.9055238Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-16T23:23:01.0279805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-16T23:23:01.9067464Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-16T23:23:02.8590928Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-16T23:23:05.0685006Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-16T23:23:05.2196438Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-16T23:23:06.3677540Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-16T23:23:07.0489350Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-16T23:23:08.0199997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-16T23:23:08.4770515Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-16T23:23:10.1397714Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-16T23:23:22.7415924Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-16T23:23:23.2923740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-16T23:23:23.9549261Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-16T23:23:24.0850231Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-16T23:23:24.1951757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-16T23:23:24.4363712Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-16T23:23:24.6151895Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-16T23:23:25.0432344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-16T23:24:17.3898817Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:24:17.4889117Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-16T23:24:17.5020717Z ** R 2021-05-16T23:24:17.5240318Z ** inst 2021-05-16T23:24:17.5288256Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:24:19.8694887Z ** help 2021-05-16T23:24:19.8703468Z *** installing help indices 2021-05-16T23:24:19.8704315Z ** building package indices 2021-05-16T23:24:19.8705053Z ** installing vignettes 2021-05-16T23:24:19.8706088Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:24:19.8707158Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:24:19.8708170Z ** testing if installed package can be loaded from final location 2021-05-16T23:24:19.9441528Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:24:19.9472804Z * DONE (matrixStats) 2021-05-16T23:24:20.3620423Z * installing *source* package ‘R.oo’ ... 2021-05-16T23:24:20.3696809Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-16T23:24:20.3698377Z ** using staged installation 2021-05-16T23:24:20.3845862Z ** R 2021-05-16T23:24:20.4210570Z ** inst 2021-05-16T23:24:20.4223649Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:24:23.3096350Z ** help 2021-05-16T23:24:23.8078458Z *** installing help indices 2021-05-16T23:24:24.1776402Z ** building package indices 2021-05-16T23:24:24.6481876Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:24:24.8619251Z ** testing if installed package can be loaded from final location 2021-05-16T23:24:25.1913744Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:24:25.1965277Z * DONE (R.oo) 2021-05-16T23:24:25.7772356Z * installing *source* package ‘R.utils’ ... 2021-05-16T23:24:25.7910975Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-16T23:24:25.7911796Z ** using staged installation 2021-05-16T23:24:25.8061775Z ** R 2021-05-16T23:24:25.8830288Z ** inst 2021-05-16T23:24:25.8843919Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:24:31.9932393Z ** help 2021-05-16T23:24:31.9933586Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-16T23:24:31.9935441Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-16T23:24:32.9109016Z *** installing help indices 2021-05-16T23:24:33.3977634Z ** building package indices 2021-05-16T23:24:34.1881349Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:24:34.4654760Z ** testing if installed package can be loaded from final location 2021-05-16T23:24:34.8941494Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:24:34.9019133Z * DONE (R.utils) 2021-05-16T23:24:34.9151740Z 2021-05-16T23:24:34.9152469Z The downloaded source packages are in 2021-05-16T23:24:34.9153922Z ‘/tmp/Rtmpiz6494/downloaded_packages’ 2021-05-16T23:24:35.0977136Z 2021-05-16T23:24:35.0985096Z checking for file ‘/tmp/Rtmpiz6494/remotesd5311ae9164f/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-16T23:24:35.0987571Z 2021-05-16T23:24:35.0990827Z checking for file ‘/tmp/Rtmpiz6494/remotesd5311ae9164f/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-16T23:24:35.0993086Z 2021-05-16T23:24:35.0996489Z checking for file ‘/tmp/Rtmpiz6494/remotesd5311ae9164f/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... OK 2021-05-16T23:24:35.1019910Z 2021-05-16T23:24:35.1023420Z ✔ checking for file ‘/tmp/Rtmpiz6494/remotesd5311ae9164f/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-16T23:24:35.1274884Z 2021-05-16T23:24:35.1275960Z 2021-05-16T23:24:35.1277016Z ─ preparing ‘neurobase’: 2021-05-16T23:24:35.1277401Z 2021-05-16T23:24:35.1278056Z 2021-05-16T23:24:35.1375298Z checking DESCRIPTION meta-information ... 2021-05-16T23:24:35.1393914Z 2021-05-16T23:24:35.1394918Z ✔ checking DESCRIPTION meta-information 2021-05-16T23:24:35.2242933Z 2021-05-16T23:24:35.2267041Z 2021-05-16T23:24:35.2269757Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:24:35.2278328Z 2021-05-16T23:24:35.2299042Z 2021-05-16T23:24:35.2301218Z ─ checking for empty or unneeded directories 2021-05-16T23:24:35.2319658Z 2021-05-16T23:24:35.2341459Z 2021-05-16T23:24:35.2343574Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-16T23:24:35.3096808Z 2021-05-16T23:24:35.3099529Z 2021-05-16T23:24:35.3101003Z 2021-05-16T23:24:35.3194625Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:24:35.3195586Z (as ‘lib’ is unspecified) 2021-05-16T23:24:35.6492262Z * installing *source* package ‘neurobase’ ... 2021-05-16T23:24:35.6497719Z ** using staged installation 2021-05-16T23:24:35.6691245Z ** R 2021-05-16T23:24:35.6917833Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:24:38.1439795Z ** help 2021-05-16T23:24:38.3132222Z *** installing help indices 2021-05-16T23:24:38.4234801Z ** building package indices 2021-05-16T23:24:38.7223367Z ** installing vignettes 2021-05-16T23:24:38.7224315Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:24:39.4574580Z ** testing if installed package can be loaded from final location 2021-05-16T23:24:40.1944973Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:24:40.1967008Z * DONE (neurobase) 2021-05-16T23:24:40.2133573Z Installing 8 packages: R.methodsS3, R.oo, RNifti, abind, bitops, kirby21.base, R.utils, matrixStats 2021-05-16T23:24:40.2139443Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-16T23:24:40.2140508Z (as ‘lib’ is unspecified) 2021-05-16T23:24:55.2981448Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-16T23:24:55.8640686Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-16T23:24:55.8802028Z ================================================== 2021-05-16T23:24:55.8802754Z downloaded 23 KB 2021-05-16T23:24:55.8803157Z 2021-05-16T23:24:55.8845166Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-16T23:24:56.5227294Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-16T23:24:56.6469348Z ================================================== 2021-05-16T23:24:56.6470802Z downloaded 373 KB 2021-05-16T23:24:56.6471697Z 2021-05-16T23:24:56.6512364Z trying URL 'https://cloud.r-project.org/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-16T23:24:56.8015378Z Content type 'application/x-gzip' length 1076925 bytes (1.0 MB) 2021-05-16T23:24:56.9321921Z ================================================== 2021-05-16T23:24:56.9323539Z downloaded 1.0 MB 2021-05-16T23:24:56.9324679Z 2021-05-16T23:24:56.9350063Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-16T23:24:57.5759742Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-16T23:24:57.5878973Z ================================================== 2021-05-16T23:24:57.5879668Z downloaded 21 KB 2021-05-16T23:24:57.5879987Z 2021-05-16T23:24:57.5944712Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-16T23:24:58.1397630Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-16T23:24:58.1402505Z ================================================== 2021-05-16T23:24:58.1403427Z downloaded 10 KB 2021-05-16T23:24:58.1404016Z 2021-05-16T23:24:58.1450105Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/kirby21.base_1.7.3.tar.gz' 2021-05-16T23:24:59.3561274Z Content type 'binary/octet-stream' length 9903 bytes 2021-05-16T23:24:59.3562536Z ================================================== 2021-05-16T23:24:59.3563419Z downloaded 9903 bytes 2021-05-16T23:24:59.3563998Z 2021-05-16T23:24:59.3616588Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-16T23:25:00.0025699Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-16T23:25:00.1299401Z ================================================== 2021-05-16T23:25:00.1300957Z downloaded 353 KB 2021-05-16T23:25:00.1301868Z 2021-05-16T23:25:00.1344833Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-16T23:25:00.7826342Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-16T23:25:00.8734057Z ================================================== 2021-05-16T23:25:00.8734614Z downloaded 190 KB 2021-05-16T23:25:00.8734995Z 2021-05-16T23:25:01.1199285Z * installing *source* package ‘R.methodsS3’ ... 2021-05-16T23:25:01.1216316Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-16T23:25:01.1254512Z ** using staged installation 2021-05-16T23:25:01.1384062Z ** R 2021-05-16T23:25:01.1456332Z ** inst 2021-05-16T23:25:01.1464919Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:25:01.6315480Z ** help 2021-05-16T23:25:01.6745612Z *** installing help indices 2021-05-16T23:25:01.7131129Z ** building package indices 2021-05-16T23:25:01.9402070Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:25:02.1388000Z ** testing if installed package can be loaded from final location 2021-05-16T23:25:02.3325648Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:25:02.3333699Z * DONE (R.methodsS3) 2021-05-16T23:25:02.6715114Z * installing *source* package ‘RNifti’ ... 2021-05-16T23:25:02.6787095Z ** package ‘RNifti’ successfully unpacked and MD5 sums checked 2021-05-16T23:25:02.6833538Z ** using staged installation 2021-05-16T23:25:02.6995001Z ** libs 2021-05-16T23:25:02.7056744Z 2021-05-16T23:25:02.7059058Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-16T23:25:20.3432493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-16T23:25:20.4363925Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-16T23:25:20.5349169Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-16T23:25:20.5768224Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-16T23:25:20.6769844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-16T23:25:21.1639116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-16T23:25:21.2075805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-16T23:25:21.3316853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-16T23:25:21.4877336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-16T23:25:21.6165675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-16T23:25:21.8490427Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-16T23:25:21.9515334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-16T23:25:22.4261273Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-16T23:25:22.5254943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-16T23:25:22.8367760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-16T23:25:23.3894734Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-16T23:25:23.3912347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-16T23:25:23.3919793Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-16T23:25:24.1211746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-16T23:25:26.8903555Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-16T23:25:26.8909535Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:25:26.8926793Z ** R 2021-05-16T23:25:26.8927501Z ** inst 2021-05-16T23:25:26.8929232Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:25:27.3095916Z ** help 2021-05-16T23:25:27.3577945Z *** installing help indices 2021-05-16T23:25:27.3935195Z ** building package indices 2021-05-16T23:25:27.6045100Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:25:27.8647114Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:25:27.8885570Z ** testing if installed package can be loaded from final location 2021-05-16T23:25:28.1528784Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:25:28.1547708Z * DONE (RNifti) 2021-05-16T23:25:28.3876191Z * installing *source* package ‘abind’ ... 2021-05-16T23:25:28.3888481Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-16T23:25:28.3937821Z ** using staged installation 2021-05-16T23:25:28.4071381Z ** R 2021-05-16T23:25:28.4125177Z ** inst 2021-05-16T23:25:28.4134339Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:25:28.9395197Z ** help 2021-05-16T23:25:28.9650561Z *** installing help indices 2021-05-16T23:25:28.9882886Z ** building package indices 2021-05-16T23:25:29.1859677Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:25:29.3643750Z ** testing if installed package can be loaded from final location 2021-05-16T23:25:29.5460982Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:25:29.5468248Z * DONE (abind) 2021-05-16T23:25:29.7433069Z * installing *source* package ‘bitops’ ... 2021-05-16T23:25:29.7440140Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-16T23:25:29.7484002Z ** using staged installation 2021-05-16T23:25:29.7571657Z ** libs 2021-05-16T23:25:29.7620169Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-16T23:25:29.9340536Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-16T23:25:29.9863003Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-16T23:25:30.0303430Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:25:30.0474986Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-16T23:25:30.0475849Z ** R 2021-05-16T23:25:30.0484700Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:25:30.2552236Z ** help 2021-05-16T23:25:30.2785191Z *** installing help indices 2021-05-16T23:25:30.2963810Z ** building package indices 2021-05-16T23:25:30.4817784Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:25:30.6653037Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:25:30.6823215Z ** testing if installed package can be loaded from final location 2021-05-16T23:25:30.8521680Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:25:30.8527434Z * DONE (bitops) 2021-05-16T23:25:31.0824138Z * installing *source* package ‘kirby21.base’ ... 2021-05-16T23:25:31.0898669Z ** package ‘kirby21.base’ successfully unpacked and MD5 sums checked 2021-05-16T23:25:31.0899689Z ** using staged installation 2021-05-16T23:25:31.0993609Z ** R 2021-05-16T23:25:31.1093650Z ** data 2021-05-16T23:25:31.1098155Z *** moving datasets to lazyload DB 2021-05-16T23:25:31.1165161Z ** inst 2021-05-16T23:25:31.1172241Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:25:31.4275405Z ** help 2021-05-16T23:25:31.4509382Z *** installing help indices 2021-05-16T23:25:31.4738143Z ** building package indices 2021-05-16T23:25:31.6748812Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:25:31.8580181Z ** testing if installed package can be loaded from final location 2021-05-16T23:25:32.0399248Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:25:32.0406120Z * DONE (kirby21.base) 2021-05-16T23:25:32.4295753Z * installing *source* package ‘matrixStats’ ... 2021-05-16T23:25:32.4393476Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-16T23:25:32.4425737Z ** using staged installation 2021-05-16T23:25:32.4581308Z ** libs 2021-05-16T23:25:32.4641345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-16T23:25:32.5049642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-16T23:25:32.5846555Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-16T23:25:32.6809514Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-16T23:25:32.7632895Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-16T23:25:32.8958757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-16T23:25:34.1658719Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-16T23:25:34.4975904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-16T23:25:35.8552064Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-16T23:25:36.0730187Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-16T23:25:36.1365619Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-16T23:25:36.3235791Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-16T23:25:36.4615938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-16T23:25:36.5995960Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-16T23:25:36.6659541Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-16T23:25:37.9678042Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-16T23:25:39.0188158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-16T23:25:40.0092856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-16T23:25:40.8112913Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-16T23:25:41.6256625Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-16T23:25:43.5796174Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-16T23:25:43.7104634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-16T23:25:44.6705917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-16T23:25:45.2241340Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-16T23:25:46.1186034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-16T23:25:46.5531885Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-16T23:25:48.1556275Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-16T23:25:59.8807934Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-16T23:26:00.4037618Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-16T23:26:01.0039807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-16T23:26:01.1171579Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-16T23:26:01.2185361Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-16T23:26:01.4474651Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-16T23:26:01.6066982Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-16T23:26:02.0100220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-16T23:26:54.5898493Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-16T23:26:54.6939031Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-16T23:26:54.7050322Z ** R 2021-05-16T23:26:54.7293010Z ** inst 2021-05-16T23:26:54.7349847Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:26:56.2317096Z ** help 2021-05-16T23:26:56.3827143Z *** installing help indices 2021-05-16T23:26:56.4779745Z ** building package indices 2021-05-16T23:26:56.7641547Z ** installing vignettes 2021-05-16T23:26:56.7714725Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:26:56.9773716Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-16T23:26:57.0037775Z ** testing if installed package can be loaded from final location 2021-05-16T23:26:57.2217786Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:26:57.2237296Z * DONE (matrixStats) 2021-05-16T23:26:57.6453177Z * installing *source* package ‘R.oo’ ... 2021-05-16T23:26:57.6527942Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-16T23:26:57.6559393Z ** using staged installation 2021-05-16T23:26:57.6704212Z ** R 2021-05-16T23:26:57.7066280Z ** inst 2021-05-16T23:26:57.7081850Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:27:00.6539107Z ** help 2021-05-16T23:27:01.0884735Z *** installing help indices 2021-05-16T23:27:01.3693444Z ** building package indices 2021-05-16T23:27:01.7974544Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:27:02.0080243Z ** testing if installed package can be loaded from final location 2021-05-16T23:27:02.2802785Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:27:02.2849620Z * DONE (R.oo) 2021-05-16T23:27:02.7807499Z * installing *source* package ‘R.utils’ ... 2021-05-16T23:27:02.7943317Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-16T23:27:02.7993258Z ** using staged installation 2021-05-16T23:27:02.8161046Z ** R 2021-05-16T23:27:02.8899217Z ** inst 2021-05-16T23:27:02.8911028Z ** byte-compile and prepare package for lazy loading 2021-05-16T23:27:08.5909236Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-16T23:27:08.5910738Z ** help 2021-05-16T23:27:08.5911619Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-16T23:27:09.4222930Z *** installing help indices 2021-05-16T23:27:09.8824980Z ** building package indices 2021-05-16T23:27:10.5761711Z ** testing if installed package can be loaded from temporary location 2021-05-16T23:27:10.8212356Z ** testing if installed package can be loaded from final location 2021-05-16T23:27:11.2169437Z ** testing if installed package keeps a record of temporary installation path 2021-05-16T23:27:11.2243439Z * DONE (R.utils) 2021-05-16T23:27:11.2390833Z 2021-05-16T23:27:11.2391671Z The downloaded source packages are in 2021-05-16T23:27:11.2392935Z ‘/tmp/Rtmpiz6494/downloaded_packages’ 2021-05-16T23:27:11.3358309Z Skipping install of 'kirby21.t1' from a github remote, the SHA1 (d9d2c588) has not changed since last install. 2021-05-16T23:27:11.3360549Z Use `force = TRUE` to force installation 2021-05-16T23:27:11.4084167Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-16T23:27:11.4085974Z Use `force = TRUE` to force installation 2021-05-16T23:27:11.4879518Z Skipping install of 'kirby21.fmri' from a github remote, the SHA1 (e5927312) has not changed since last install. 2021-05-16T23:27:11.4881329Z Use `force = TRUE` to force installation 2021-05-16T23:27:11.5607266Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-16T23:27:11.5609418Z Use `force = TRUE` to force installation 2021-05-16T23:27:24.6328403Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-16T23:27:24.6331040Z Use `force = TRUE` to force installation 2021-05-16T23:27:24.6342821Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-16T23:27:24.6346770Z Use `force = TRUE` to force installation 2021-05-16T23:27:24.6483270Z ##[group]Run options(width = 100) 2021-05-16T23:27:24.6483872Z options(width = 100) 2021-05-16T23:27:24.6484511Z pkgs <- installed.packages()[, "Package"] 2021-05-16T23:27:24.6485274Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-16T23:27:24.6493091Z shell: /usr/local/bin/Rscript {0} 2021-05-16T23:27:24.6493563Z env: 2021-05-16T23:27:24.6494047Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:27:24.6494581Z TIC_DEPLOY_KEY: 2021-05-16T23:27:24.6495595Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:27:24.6497674Z GITHUB_PAT: *** 2021-05-16T23:27:24.6498119Z COVERALLS_TOKEN: 2021-05-16T23:27:24.6498609Z continue-on-error: true 2021-05-16T23:27:24.6499106Z VDIFFR_RUN_TESTS: 2021-05-16T23:27:24.6499601Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:27:24.6500069Z TZ: UTC 2021-05-16T23:27:24.6500464Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:27:24.6500928Z NOT_CRAN: true 2021-05-16T23:27:24.6501322Z ##[endgroup] 2021-05-16T23:27:25.0850143Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-16T23:27:25.0851152Z setting value 2021-05-16T23:27:25.0852479Z version R Under development (unstable) (2021-05-15 r80301) 2021-05-16T23:27:25.0853512Z os Ubuntu 20.04.2 LTS 2021-05-16T23:27:25.0854628Z system x86_64, linux-gnu 2021-05-16T23:27:25.0855527Z ui X11 2021-05-16T23:27:25.0856351Z language (EN) 2021-05-16T23:27:25.0857463Z collate C.UTF-8 2021-05-16T23:27:25.0858580Z ctype C.UTF-8 2021-05-16T23:27:25.0859389Z tz UTC 2021-05-16T23:27:25.0860444Z date 2021-05-16 2021-05-16T23:27:25.0860886Z 2021-05-16T23:27:25.0862170Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-16T23:27:25.0863361Z package * version date lib source 2021-05-16T23:27:25.0864737Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 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4.2.0) 2021-05-16T23:27:25.0911781Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0912643Z graphics * 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0913509Z grDevices * 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0914748Z grid 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0915760Z highr 0.9 2021-04-16 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0916686Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0918378Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0919304Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0920356Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0921329Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0922318Z kirby21.base 1.7.3 2020-07-02 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0923453Z kirby21.fmri 1.7.0 2021-05-16 [1] Github (neuroconductor/kirby21.fmri@e592731) 2021-05-16T23:27:25.0924686Z kirby21.t1 1.7.3.2 2021-05-16 [1] Github (neuroconductor/kirby21.t1@d9d2c58) 2021-05-16T23:27:25.0925757Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0926671Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0927617Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0928578Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0929589Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0930458Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0931296Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0932142Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0933032Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0933953Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0934709Z methods * 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0935439Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0936181Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0937037Z neurobase 1.30.1 2021-05-16 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-16T23:27:25.0937907Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0938640Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0939375Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0940528Z oro.nifti 0.10.3 2021-05-16 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-16T23:27:25.0941525Z parallel 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0942396Z pillar 1.6.1 2021-05-16 [1] CRAN (R 4.2.0) 2021-05-16T23:27:25.0943263Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0944139Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0945025Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0945876Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0946766Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0947671Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0948603Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0949436Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0950304Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0951176Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0952064Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0952922Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0953774Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0954776Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0955646Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0956499Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0957381Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0958225Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0959052Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0959919Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0960770Z RNifti 1.3.1 2021-05-13 [1] CRAN (R 4.2.0) 2021-05-16T23:27:25.0961667Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0973503Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0974408Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0975330Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0976218Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0977108Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0978018Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0978915Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0979793Z splines 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0980628Z stats * 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0981475Z stats4 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0982324Z stringi 1.6.1 2021-05-10 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0983202Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0984071Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-16T23:27:25.0984914Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0985837Z sysreqs 1.0.0.9000 2021-05-16 [1] Github (r-hub/sysreqs@f068afa) 2021-05-16T23:27:25.0986730Z tcltk 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0987589Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0988459Z tibble 3.1.2 2021-05-16 [1] CRAN (R 4.2.0) 2021-05-16T23:27:25.0989629Z tic 0.10.0 2021-05-16 [1] Github (ropensci/tic@3b4dfb8) 2021-05-16T23:27:25.0990526Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0991585Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0992456Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0993310Z tools 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0994664Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0995606Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0996511Z utils * 4.2.0 2021-05-16 [2] local 2021-05-16T23:27:25.0997402Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0998307Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.0999231Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.1000237Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.1001075Z xfun 0.23 2021-05-15 [1] CRAN (R 4.2.0) 2021-05-16T23:27:25.1001894Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.1002748Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.1003593Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.1004414Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-16T23:27:25.1004739Z 2021-05-16T23:27:25.1005232Z [1] /home/runner/work/_temp/Library 2021-05-16T23:27:25.1005787Z [2] /opt/R/devel/lib/R/library 2021-05-16T23:27:25.1039643Z ##[group]Run Rscript -e 'tic::script()' 2021-05-16T23:27:25.1040289Z Rscript -e 'tic::script()' 2021-05-16T23:27:25.1040738Z ls -l check 2021-05-16T23:27:25.1085749Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-16T23:27:25.1086282Z env: 2021-05-16T23:27:25.1086746Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:27:25.1087223Z TIC_DEPLOY_KEY: 2021-05-16T23:27:25.1088068Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:27:25.1089653Z GITHUB_PAT: *** 2021-05-16T23:27:25.1090075Z COVERALLS_TOKEN: 2021-05-16T23:27:25.1090565Z continue-on-error: true 2021-05-16T23:27:25.1091054Z VDIFFR_RUN_TESTS: 2021-05-16T23:27:25.1091543Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:27:25.1092009Z TZ: UTC 2021-05-16T23:27:25.1092411Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:27:25.1092827Z NOT_CRAN: true 2021-05-16T23:27:25.1093220Z ##[endgroup] 2021-05-16T23:27:25.3595347Z ✔ Loading tic stage configuration from tic.R 2021-05-16T23:27:25.4750068Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-16T23:27:25.4752646Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-16T23:27:25.4754651Z timeout = Inf, check_dir = "check") 2021-05-16T23:27:25.5380573Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-16T23:27:25.7534357Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-16T23:27:25.7657597Z * preparing ‘afnir’: 2021-05-16T23:27:25.7707361Z * checking DESCRIPTION meta-information ... OK 2021-05-16T23:27:25.8113447Z * checking for LF line-endings in source and make files and shell scripts 2021-05-16T23:27:25.8122092Z * checking for empty or unneeded directories 2021-05-16T23:27:25.8154227Z * building ‘afnir_0.4.6.tar.gz’ 2021-05-16T23:27:25.8432093Z 2021-05-16T23:27:25.9738943Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-16T23:27:26.1788018Z * using log directory ‘/home/runner/work/afnir/afnir/check/afnir.Rcheck’ 2021-05-16T23:27:26.1789869Z * using R Under development (unstable) (2021-05-15 r80301) 2021-05-16T23:27:26.1791012Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-16T23:27:26.1792004Z * using session charset: UTF-8 2021-05-16T23:27:26.2202118Z * using option ‘--as-cran’ 2021-05-16T23:27:26.2216032Z * checking for file ‘afnir/DESCRIPTION’ ... OK 2021-05-16T23:27:26.2229243Z * checking extension type ... Package 2021-05-16T23:27:26.2231573Z * this is package ‘afnir’ version ‘0.4.6’ 2021-05-16T23:27:26.2233393Z * package encoding: UTF-8 2021-05-16T23:27:26.2249355Z * checking package namespace information ... OK 2021-05-16T23:27:41.1768423Z * checking package dependencies ... OK 2021-05-16T23:27:41.1785825Z * checking if this is a source package ... OK 2021-05-16T23:27:41.1787663Z * checking if there is a namespace ... OK 2021-05-16T23:27:41.9359011Z * checking for executable files ... OK 2021-05-16T23:27:41.9370473Z * checking for hidden files and directories ... OK 2021-05-16T23:27:41.9371846Z * checking for portable file names ... OK 2021-05-16T23:27:41.9372996Z * checking for sufficient/correct file permissions ... OK 2021-05-16T23:27:41.9374772Z * checking serialization versions ... OK 2021-05-16T23:27:44.8106132Z * checking whether package ‘afnir’ can be installed ... OK 2021-05-16T23:27:44.8231777Z * checking installed package size ... OK 2021-05-16T23:27:44.8990878Z * checking package directory ... OK 2021-05-16T23:27:44.8995199Z * checking for future file timestamps ... OK 2021-05-16T23:27:45.0715858Z * checking DESCRIPTION meta-information ... OK 2021-05-16T23:27:45.0717151Z * checking top-level files ... OK 2021-05-16T23:27:45.0718174Z * checking for left-over files ... OK 2021-05-16T23:27:45.0719015Z * checking index information ... OK 2021-05-16T23:27:45.1923613Z * checking package subdirectories ... OK 2021-05-16T23:27:45.2474472Z * checking R files for non-ASCII characters ... OK 2021-05-16T23:27:45.3069487Z * checking R files for syntax errors ... OK 2021-05-16T23:27:46.0096427Z * checking whether the package can be loaded ... OK 2021-05-16T23:27:46.6899481Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-16T23:27:47.3484013Z * checking whether the package can be unloaded cleanly ... OK 2021-05-16T23:27:47.9760976Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-16T23:27:48.6395437Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-16T23:27:49.3734871Z * checking loading without being on the library search path ... OK 2021-05-16T23:27:50.1022330Z * checking dependencies in R code ... OK 2021-05-16T23:27:51.2093109Z * checking S3 generic/method consistency ... OK 2021-05-16T23:27:51.8536128Z * checking replacement functions ... OK 2021-05-16T23:27:52.5359730Z * checking foreign function calls ... OK 2021-05-16T23:27:57.9588261Z * checking R code for possible problems ... OK 2021-05-16T23:27:58.2203506Z * checking Rd files ... OK 2021-05-16T23:27:58.2715458Z * checking Rd metadata ... OK 2021-05-16T23:27:58.3906341Z * checking Rd line widths ... OK 2021-05-16T23:27:58.5115969Z * checking Rd cross-references ... OK 2021-05-16T23:27:59.2429809Z * checking for missing documentation entries ... OK 2021-05-16T23:28:01.2595716Z * checking for code/documentation mismatches ... OK 2021-05-16T23:28:02.6057859Z * checking Rd \usage sections ... OK 2021-05-16T23:28:02.7267304Z * checking Rd contents ... OK 2021-05-16T23:28:02.8223050Z * checking for unstated dependencies in examples ... OK 2021-05-16T23:28:04.0328815Z * checking examples ... OK 2021-05-16T23:28:06.1997096Z * checking PDF version of manual ... OK 2021-05-16T23:28:06.2000043Z * checking for non-standard things in the check directory ... OK 2021-05-16T23:28:06.2001812Z * checking for detritus in the temp directory ... OK 2021-05-16T23:28:06.2002593Z * DONE 2021-05-16T23:28:06.2008339Z 2021-05-16T23:28:06.2009291Z Status: OK 2021-05-16T23:28:06.2014883Z 2021-05-16T23:28:06.2806971Z ── R CMD check results ──────────────────────────────────────── afnir 0.4.6 ──── 2021-05-16T23:28:06.2828708Z Duration: 40.4s 2021-05-16T23:28:06.2829315Z 2021-05-16T23:28:06.2840056Z 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ 2021-05-16T23:28:06.2927579Z total 152 2021-05-16T23:28:06.2928903Z drwxr-xr-x 5 runner docker 4096 May 16 23:28 afnir.Rcheck 2021-05-16T23:28:06.2931231Z -rw-r--r-- 1 runner docker 22712 May 16 23:27 afnir_0.4.6.tar.gz 2021-05-16T23:28:06.2932518Z -rw-r--r-- 1 runner docker 123139 May 16 23:27 afnir_0.4.6_R_x86_64-pc-linux-gnu.tar.gz 2021-05-16T23:28:06.2966815Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-16T23:28:06.2967625Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-16T23:28:06.3007729Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-16T23:28:06.3008194Z env: 2021-05-16T23:28:06.3008581Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:28:06.3009015Z TIC_DEPLOY_KEY: 2021-05-16T23:28:06.3009738Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:28:06.3017499Z GITHUB_PAT: *** 2021-05-16T23:28:06.3017967Z COVERALLS_TOKEN: 2021-05-16T23:28:06.3018496Z continue-on-error: true 2021-05-16T23:28:06.3019029Z VDIFFR_RUN_TESTS: 2021-05-16T23:28:06.3019560Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:28:06.3020062Z TZ: UTC 2021-05-16T23:28:06.3020480Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:28:06.3020940Z NOT_CRAN: true 2021-05-16T23:28:06.3021345Z ##[endgroup] 2021-05-16T23:28:06.3146325Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-16T23:28:06.3146934Z Rscript -e "tic::before_deploy()" 2021-05-16T23:28:06.3183204Z shell: /usr/bin/bash -e {0} 2021-05-16T23:28:06.3183595Z env: 2021-05-16T23:28:06.3184058Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:28:06.3184537Z TIC_DEPLOY_KEY: 2021-05-16T23:28:06.3185386Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:28:06.3186695Z GITHUB_PAT: *** 2021-05-16T23:28:06.3187054Z COVERALLS_TOKEN: 2021-05-16T23:28:06.3187494Z continue-on-error: true 2021-05-16T23:28:06.3187909Z VDIFFR_RUN_TESTS: 2021-05-16T23:28:06.3188355Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:28:06.3188746Z TZ: UTC 2021-05-16T23:28:06.3189104Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:28:06.3189469Z NOT_CRAN: true 2021-05-16T23:28:06.3189863Z ##[endgroup] 2021-05-16T23:28:06.5858726Z ✔ Loading tic stage configuration from tic.R 2021-05-16T23:28:06.7109364Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-16T23:28:06.7109952Z with: 2021-05-16T23:28:06.7110805Z upload_url: https://uploads.github.com/repos/neuroconductor/afnir/releases/43023014/assets{?name,label} 2021-05-16T23:28:06.7111858Z asset_path: check/afnir_0.4.6_R_x86_64-pc-linux-gnu.tar.gz 2021-05-16T23:28:06.7112540Z asset_name: afnir_0.4.6_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-16T23:28:06.7113213Z asset_content_type: application/octet-stream 2021-05-16T23:28:06.7113717Z env: 2021-05-16T23:28:06.7114531Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:28:06.7115010Z TIC_DEPLOY_KEY: 2021-05-16T23:28:06.7116190Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:28:06.7117809Z GITHUB_PAT: *** 2021-05-16T23:28:06.7118218Z COVERALLS_TOKEN: 2021-05-16T23:28:06.7118729Z continue-on-error: true 2021-05-16T23:28:06.7119215Z VDIFFR_RUN_TESTS: 2021-05-16T23:28:06.7119805Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:28:06.7120215Z TZ: UTC 2021-05-16T23:28:06.7120785Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:28:06.7121169Z NOT_CRAN: true 2021-05-16T23:28:06.7122030Z GITHUB_TOKEN: *** 2021-05-16T23:28:06.7122372Z ##[endgroup] 2021-05-16T23:28:07.1743233Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-16T23:28:07.1744076Z Rscript -e "tic::deploy()" 2021-05-16T23:28:07.1789868Z shell: /usr/bin/bash -e {0} 2021-05-16T23:28:07.1790219Z env: 2021-05-16T23:28:07.1790627Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:28:07.1791056Z TIC_DEPLOY_KEY: 2021-05-16T23:28:07.1791871Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:28:07.1793118Z GITHUB_PAT: *** 2021-05-16T23:28:07.1793425Z COVERALLS_TOKEN: 2021-05-16T23:28:07.1794117Z continue-on-error: true 2021-05-16T23:28:07.1794538Z VDIFFR_RUN_TESTS: 2021-05-16T23:28:07.1794986Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:28:07.1795383Z TZ: UTC 2021-05-16T23:28:07.1795747Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:28:07.1796111Z NOT_CRAN: true 2021-05-16T23:28:07.1796455Z ##[endgroup] 2021-05-16T23:28:07.4571187Z ✔ Loading tic stage configuration from tic.R 2021-05-16T23:28:07.5801149Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-16T23:28:07.5801764Z Rscript -e "tic::after_deploy()" 2021-05-16T23:28:07.5844971Z shell: /usr/bin/bash -e {0} 2021-05-16T23:28:07.5845386Z env: 2021-05-16T23:28:07.5845840Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-16T23:28:07.5846339Z TIC_DEPLOY_KEY: 2021-05-16T23:28:07.5847199Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-16T23:28:07.5848939Z GITHUB_PAT: *** 2021-05-16T23:28:07.5849369Z COVERALLS_TOKEN: 2021-05-16T23:28:07.5849863Z continue-on-error: true 2021-05-16T23:28:07.5850355Z VDIFFR_RUN_TESTS: 2021-05-16T23:28:07.5850845Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-16T23:28:07.5851312Z TZ: UTC 2021-05-16T23:28:07.5851706Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-16T23:28:07.5852138Z NOT_CRAN: true 2021-05-16T23:28:07.5852531Z ##[endgroup] 2021-05-16T23:28:07.8471390Z ✔ Loading tic stage configuration from tic.R 2021-05-16T23:28:08.1138804Z Post job cleanup. 2021-05-16T23:28:08.1534925Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-16T23:28:08.1616656Z Post job cleanup. 2021-05-16T23:28:08.2508112Z [command]/usr/bin/git version 2021-05-16T23:28:08.2558485Z git version 2.31.1 2021-05-16T23:28:08.2588894Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-16T23:28:08.2627627Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-16T23:28:08.2870100Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-16T23:28:08.2907218Z http.https://github.com/.extraheader 2021-05-16T23:28:08.2916531Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-16T23:28:08.2955327Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-16T23:28:08.3214459Z Cleaning up orphan processes