Package penn115 details

Template MRI Scan from 115 University of Pennsylvania Patients

Provides an template high-resolution 'T1' magnetic resonance imaging ('MRI') from 115 patients from a University of Pennsylvania study . A template, brain, and brain mask are given.

Maintainer: John Muschelli < muschellij2 at gmail.com >

 
From within R, enter citation(penn115)


Pustina D, Coslett HB, Turkeltaub PE, Tustison N, Schwartz MF, Avants B
(2016). "Automated segmentation of chronic stroke lesions using LINDA:
Lesion identification with neighborhood data analysis." _Human brain
mapping_, *37*(4), 1405-1421.

A BibTeX entry for LaTeX users is

@Article{pustina2016automated,
title = {Automated segmentation of chronic stroke lesions using LINDA: Lesion identification with neighborhood data analysis},
author = {Dorian Pustina and H Branch Coslett and Peter E Turkeltaub and Nicholas Tustison and Myrna F Schwartz and Brian Avants},
journal = {Human brain mapping},
volume = {37},
number = {4},
pages = {1405--1421},
year = {2016},
publisher = {Wiley Online Library},
}

 

If you have any problems with this package you can open a new issue or check the already existing ones here.

 
 
To install this package, start R and enter:

source("https://neuroconductor.org/neurocLite.R")

# use release_versions() to find previous releases
neuro_install('penn115', release_repo= 'https://neuroconductor.org/releases/2018/feb')

# Default Install
neuro_install('penn115')

# From the Binary Repo in NeuroC
neuro_install('penn115', release = "stable", release_repo = binary_release_repo(release = "stable"))
neuro_install('penn115', release = "current", release_repo = binary_release_repo(release = "current"))

# from GitHub
neuro_install('penn115', release = "stable", release_repo = "github")
neuro_install('penn115', release = "current", release_repo = "github")

More detailed installation instructions can be found here.

 

Initially submitted on November 7 2018 6:42PM
Last updated on November 7 2018 6:42PM
Package type data
Source GitHub https://github.com/muschellij2/penn115 GitHub
Neuroconductor GitHub https://github.com/neuroconductor/penn115 GitHub
DependsR (2.10)
Importsneurobase
Suggestscovr, knitr, rmarkdown, testthat
Reverse Importssmri.process