Package freesurfer details

  Package Description
Wrapper Functions for 'Freesurfer'

Wrapper functions that interface with 'Freesurfer' , a powerful and commonly-used 'neuroimaging' software, using system commands. The goal is to be able to interface with 'Freesurfer' completely in R, where you pass R objects of class 'nifti', implemented by package 'oro.nifti', and the function executes an 'Freesurfer' command and returns an R object of class 'nifti' or necessary output.

Maintainer: John Muschelli < muschellij2 at gmail.com >

Documentation

 
  Citation
From within R, enter citation('freesurfer')

 
  Issues

If you have any problems with this package you can open a new issue or check the already existing ones here.

 
  Versions(Pending - no previous version)
 
  Installation
To install this package, start R and enter:

source("https://neuroconductor.org/neurocLite.R")

# Default Install
neuro_install('freesurfer')

# from GitHub
neuro_install('freesurfer', release = "stable", release_repo = "github")
neuro_install('freesurfer', release = "current", release_repo = "github")

More detailed installation instructions can be found here.

 
  Details

Initially submitted on October 2 2018 2:32PM
Last updated on March 31 2021 10:00AM
Package type standard
Source GitHub https://github.com/muschellij2/freesurfer GitHub
Neuroconductor GitHub https://github.com/neuroconductor/freesurfer GitHub
System requirementsfreesurfer
DependsR (3.2.0)
Importsmethods, neurobase, tools, R.utils, reshape2, utils
Suggestsmagrittr, knitr, oro.nifti (0.7), rgl, rmarkdown, pander, fslr (2.9.2)
Reverse Suggestsggseg