All functions
|
|
all_exists()
|
All Files exist |
|
ants_smooth_images()
|
Smoothing sMRI data with ANTs |
|
apply_mask()
|
Apply Brain mask |
|
apply_spatial_normalize()
|
Apply Spatial Normalization |
|
bc_noneck_reduce()
|
Bias Correct, Remove Neck, Reduce Image |
|
download_template_img_data() template_img_data()
|
Download Eve-Template Normed data |
|
fsl_smooth_images()
|
Smoothing sMRI data with FSL |
|
gather_predictors()
|
Gather all predictors from norm_predictors function |
|
intensity_normalize()
|
SMRI Normalize |
|
minmax()
|
Normalize using Min/Max |
|
multi_fast()
|
Multiple FAST for PD/T1/T2 |
|
n4_raw()
|
N4 Bias Field Correction |
|
n4_skull_strip()
|
Skull Strip image |
|
noneck()
|
Remove Neck (Doubly) |
|
norm_predictors()
|
SMRI Intensity Normalize and Create Predictors |
|
quantile_mask()
|
Threshold Quantile Image |
|
reduce_img() mask_reduce()
|
Reduce Image, Dropping Image Dimensions |
|
reg_to_t1()
|
Register Images to Another image (usually T1) |
|
rpi_raw()
|
RPI Orientation of Images |
|
seg_normalize()
|
Spatially Normalize SMRI data and Tissue Segmentation |
|
set_origin_zero()
|
Set Origin to Zero for the Images |
|
smri_corr_img()
|
SMRI Local Correlation Images |
|
smri_flipped()
|
SMRI Flipped Image (x-y flipped) |
|
smri_moments()
|
Structural MRI Moment images |
|
smri_prenormalize()
|
SMRI Pipeline for Preprocessing Prior to Normalization |
|
spatial_normalize()
|
Spatially Normalize SMRI data |
|
t1_segment()
|
MALF Tissue and Structure Segmentation |
|
template_z_score()
|
SMRI Z-score compared to a Template |
|
winsor()
|
Winsorize Image |