Bias Correct, Remove Neck, Reduce Image

Bias Correct, Remove Neck, Reduce Image

bc_noneck_reduce(x, remove_negative = TRUE, gold_standard = NULL,
  gs_space = NULL, reduce = TRUE, cleanup = 1, probs = c(0, 0.999),
  non_zero = TRUE, outdir = tempdir(), verbose = TRUE)

Arguments

x

List of images or character vector. Must be named with the imaging modalities.
remove_negative

Force values less than zero to zero
gold_standard

Gold Standard image/filename, if applicable
gs_space

space the Gold Standard is located
reduce

If TRUE, the image size will be reduced using reduce_img.
cleanup

Argument to oMask. If >0, morphological operations will be applied to clean up the mask by eroding away small or weakly-connected areas, and closing holes.
probs

passed to winsor for Winsorization
non_zero

Should zeroes be excluded from the calculation of quantiles? Passed to winsor.
outdir

Output directory
verbose

print diagnostic messages

Value

List of output filenames