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applyEmptyImageDimensions() apply_empty_dim()
|
Apply Subsetting from Empty Image Dimensions |
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boxplot(<nifti>) boxplot(<anlz>)
|
Boxplot of Values in an Image |
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breaker()
|
Find Breaks for nifti Image Plotting |
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check_mask()
|
Check Mask is Binary |
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check_mask_fail()
|
Check Mask is Binary, Fail otherwise |
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check_nifti()
|
Check if nifti image or read in a nifti image |
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check_nifti_header()
|
Check if nifti image or read in a nifti header |
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check_outfile()
|
Check output filename |
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checkimg()
|
Force object to filename |
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checknii() ensure_nii()
|
Force object to filename with .nii extension |
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checkniigz() ensure_nii_gz()
|
Force object to filename with .nii.gz extension |
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cog()
|
Image Center of Gravity |
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colorbar()
|
Add a colorbar to an ortho2 object |
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copyNIfTIHeader()
|
Copy NIfTI Header to an array |
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cut(<nifti>) cut(<anlz>)
|
Perform Cut on an image |
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datatyper()
|
Change Data type for img |
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density(<nifti>) density(<anlz>)
|
Density of Values in an Image |
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dicer()
|
Calculate Dice from a Table |
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double_ortho()
|
Double Orthographic Display |
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dropEmptyImageDimensions() drop_empty_dim()
|
Drop Empty Image Dimensions |
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emptyImageDimensionsMask() empty_dim_mask()
|
Make Mask from Empty Image Dimensions |
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ensure_array()
|
Ensure an array output |
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fast_dice_tab() fast_dice()
|
Fast Dice Tabulation |
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fast_readnii()
|
Reading NIfTI images through RNifti |
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file_imgext()
|
Get Image file extension |
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finite_img()
|
Finite Image |
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flip_img()
|
Flip NifTI Image |
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getEmptyImageDimensions() get_empty_dim()
|
Get Empty Image Dimensions |
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hist(<nifti>) hist(<anlz>)
|
Histogram of Values in an Image |
|
images2matrix()
|
Transform set of images to matrix |
|
img_colour_df() img_color_df()
|
Convert Image to Data.frame with Colors |
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img_indices()
|
Retrieve Image Indices |
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img_list_to_ts()
|
Image List to Time Series |
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img_ts_to_df()
|
Image Time Series to Data.frame |
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img_ts_to_list()
|
Image Time Series to list |
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img_ts_to_matrix()
|
Image Time Series to Matrix |
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maskEmptyImageDimensions() mask_empty_dim()
|
Apply Masking from Empty Image Dimensions |
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mask_img()
|
Mask Image |
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mask_vals() `mask_vals<-`()
|
Extract or Replace Values Inside a Mask |
|
mean(<nifti>) mean(<anlz>)
|
Mean of Values in an Image |
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minmax_img()
|
Normalize Image using Range |
|
multi_overlay() multi_overlay_center()
|
Create Multi-Image Plot with Overlays |
|
newnii()
|
Resets image parameters for a copied nifti object |
|
niftiarr()
|
Make new nifti from array |
|
nii.stub()
|
Grab nii file stubname |
|
ortho2()
|
Orthographic Display, added options |
|
ortho_diff() multi_overlay_diff()
|
Plot differences for Prediction and Gold Standard |
|
parse_img_ext()
|
Parse Image Extensions |
|
quantile(<nifti>) quantile(<anlz>)
|
Sample Quantiles |
|
quantile_img()
|
Create Quantile Image |
|
random_nifti()
|
Create Random `nifti` object |
|
randomize_mask()
|
Randomize Image based on Mask |
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readNIfTI2() readnii()
|
readNIfTI with default non-reorientation |
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remake_img()
|
Remake Image from Vector |
|
remap_filename()
|
Build Filename (usually for images) |
|
replaceEmptyImageDimensions() replace_empty_dim()
|
Replace Subsetting from Empty Image Dimensions |
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replace_dropped_dimensions()
|
Remake Dropped Dimensions |
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replace_outside_surface()
|
Replace Values Outside Surface of image |
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rescale_img()
|
Image Rescaler |
|
robust_window()
|
Window image based on quantiles of Image |
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same_dims()
|
Check if Objects have Same Dimensions |
|
separate_img()
|
Separate Labeled Image into Multiple Binary Images |
|
slice_colour_df()
|
Slice a Image Color Data.frame |
|
subset_dti()
|
Subset DTI data based on b-values
#' |
|
tempimg()
|
Create temporary nii.gz file |
|
window_img()
|
nifti image windower |
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writeNIfTI2() writenii()
|
writeNIfTI with default non-reorientation |
|
write_nifti()
|
General NIfTI Writer |
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xyz()
|
Image Center of Gravity Wrapper |
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zero_pad()
|
Zero pads an image |
|
zlimmer()
|
Find Image z-limits |
|
zscore_img()
|
Get Z-score over a margin of an img |