Package ichseg details

Intracerebral Hemorrhage Segmentation of X-Ray Computed Tomography (CT) Images

Performs preprocessing on computed tomography (CT) scans, including skull stripping. Computes predictors of intracerebral hemorrhage (ICH) and uses these to predict a binary hemorrhage mask from the data.

Maintainer: John Muschelli < muschellij2 at gmail.com >

Documentation

 
From within R, enter citation('ichseg')


Muschelli J, Sweeney EM, Ullman NL, Vespa P, Hanley DF, Crainiceanu CM
(2017). "PItcHPERFeCT: Primary Intracranial Hemorrhage Probability
Estimation using Random Forests on CT." _NeuroImage: Clinical_, *14*,
379-390.

A BibTeX entry for LaTeX users is

@Article{muschelli2017pitchperfect,
title = {{PItcHPERFeCT}: Primary Intracranial Hemorrhage Probability Estimation using Random Forests on {CT}},
author = {John Muschelli and Elizabeth M Sweeney and Natalie L Ullman and Paul Vespa and Daniel F Hanley and Ciprian M Crainiceanu},
journal = {NeuroImage: Clinical},
volume = {14},
pages = {379--390},
year = {2017},
publisher = {Elsevier},
}

 

If you have any problems with this package you can open a new issue or check the already existing ones here.

 
 
To install this package, start R and enter:

source("https://neuroconductor.org/neurocLite.R")

# Default Install
neuro_install('ichseg')

# from GitHub
neuro_install('ichseg', release = "stable", release_repo = "github")
neuro_install('ichseg', release = "current", release_repo = "github")

More detailed installation instructions can be found here.

 

Initially submitted on October 16 2018 10:16PM
Last updated on November 11 2019 6:00PM
Package type standard
Source GitHub https://github.com/muschellij2/ichseg.git GitHub
Neuroconductor GitHub https://github.com/neuroconductor/ichseg GitHub
DependsR (2.10)
Importsdcm2niir, stats, extrantsr (3.1), oro.nifti, neurobase (1.27.11.1), fslr (2.4), magic, randomForest, shiny
Suggestsdcmtk, tractor.base, dplyr, knitr