Package ANTsR details
ANTs in R: Quantification Tools for Biomedical Images
ANTsR interfaces state of the art image processing with R statistical methods. The project grew out of the need, at University of Pennsylvania, to develop large-scale analytics pipelines that track provenance from scanner to scientific study. ANTsR wraps an ANTs and ITK C++ core via Rcpp to access these frameworks from within R and support reproducible analyses. Specialized functionality in ANTsR includes image segmentation and registration along imaging specific variations of principal component and canonical correlation analysis.
Maintainer: Brian B. Avants < stnava at gmail.com >
From within R, enter citation('ANTsR')
To cite package 'ANTsR' in publications use:
Brian B Avants (2020). ANTsR: ANTs in R: Quantification Tools for
Biomedical Images. R package version 0.5.7.4.
A BibTeX entry for LaTeX users is
@Manual{,
title = {ANTsR: ANTs in R: Quantification Tools for Biomedical Images},
author = {Brian B Avants},
year = {2020},
note = {R package version 0.5.7.4},
}
If you have any problems with this package you can open a new issue or check the already existing ones here.
To install this package, start R and enter:
source("https://.org/Lite.R")
# Default Install
neuro_install('ANTsR')
# from GitHub
neuro_install('ANTsR', release = "stable", release_repo = "github")
neuro_install('ANTsR', release = "current", release_repo = "github")
More detailed installation instructions can be found here.
Initially submitted on | October 15 2018 12:19PM |
Last updated on | October 9 2020 10:43AM |
Package type | standard |
Source GitHub | https://github.com/stnava/ANTsR GitHub |
GitHub | https://github.com//ANTsR GitHub |
System requirements | cmake, git, clang |
Depends | R (3.0), methods, ANTsRCore (0.7.4) |
Imports | graphics, grDevices, magrittr, stats, utils |
LinkingTo | Rcpp, ITKR, ANTsRCore |
Suggests | magic, psych, rsvd, abind, BGLR, caret, cluster, corpcor, DMwR, dplyr, e1071, extremevalues, fastICA, fpc, ggplot2, glasso, glmnet, grid, hdf5r, ifultools, igraph, irlba, knitr, MASS, Matrix, mFilter, misc3d, moments, networkD3, pixmap, png, pracma, randomForest, R.matlab, Rcpp, RcppEigen, RcppHNSW, rgl, rmarkdown, robust, robustbase, signal, sna, testthat, tools, viridis, visreg, wmtsa, xgboost, FNN |
Reverse Depends | LESYMAP |
Reverse Imports | smri.process, LINDA, lungct, extrantsr (0.4.1.0), medals (0.4.1.0) |