All functions

afni_3dABoverlap() ABoverlap() aboverlap()

AFNI 3dABoverlap function

afni_3dAFNItoNIFTI() afni_to_nifti()

Convert AFNI File to NIFTI Image

afni_3dAllineate() allineate()

AFNI 3dAllineate function

afni_3dAutomask() Automask() automask()

AFNI 3dAutomask function

afni_3dClipLevel() ClipLevel()

AFNI 3dClipLevel function

afni_3dDespike() despike()

Convert AFNI File to NIFTI Image

afni_3dFourier()

AFNI 3dFourier function

afni_3dNwarpApply() afni_warp_apply() NwarpApply()

AFNI 3dNwarpApply function

afni_3dQwarp() Qwarp() qwarp()

AFNI 3dQwarp function

afni_3dSkullStrip() SkullStrip()

AFNI 3dSkullStrip function

afni_3dTshift() tshift()

Convert AFNI File to NIFTI Image

afni_3dTstat() afni_3dtstat() tstat() Tstat()

AFNI 3dTstat function

afni_3dWinsor() Winsor() winsor()

AFNI 3dWinsor function

afni_3dcalc()

AFNI 3dcalc function

afni_3drefit() refit()

AFNI 3drefit function

afni_3dresample() resample()

AFNI 3dresample function

afni_3dvolreg() volreg()

Perform Volume Registration for Motion Correction

afni_cmd()

afni Command Wrapper

afni_dir() afnidir()

Get AFNI Directory

afni_edge_mask()

AFNI Edge Mask

afni_quote_expression()

Quote an Expression

afni_read_affine()

Read AFNI Affine Matrix

afni_subset_4d()

Subset 4D images

afni_suffix()

Get AFNI suffix for file

afni_tt_vent_mask()

Create AFNI Ventricle Mask in Talairach space

afni_version() afniversion()

GET AFNI Version

brik.stub()

Grab filename without BRIK, HEAD or nii

checkimg(<afni>)

Force object to filename

get_afni()

Create command declaring for the AFNI directory

have_afni()

Logical check if AFNI is accessible

nifti_to_afni()

Convert NIfTI Image to AFNI FIle