Class "afni"

Source: R/afniS4.R

The AFNI class for medical imaging data.

# S4 method for afni
show(object)

Arguments

object

An object of class afni.

Objects from the Class

Objects can be created by calls of the form new("afni", data, dim, dimnames, ...).

Slots

.Data:

Object of class "array" contains the imaging data

DATASET_RANK:

Object of class "integer"

DATASET_DIMENSIONS:

Object of class "integer"

TYPESTRING:

Object of class "character"

SCENE_DATA:

Object of class "integer"

ORIENT_SPECIFIC:

Object of class "integer"

ORIGIN:

Object of class "numeric"

DELTA:

Object of class "numeric"

TAXIS_NUMS:

Object of class "integer"

TAXIS_FLOATS:

Object of class "numeric"

TAXIS_OFFSETS:

Object of class "numeric"

IDCODE_STRING:

Object of class "character"

IDCODE_DATE:

Object of class "character"

BYTEORDER_STRING:

Object of class "character"

BRICK_STATS:

Object of class "numeric"

BRICK_TYPES:

Object of class "integer"

BRICK_FLOAT_FACS:

Object of class "numeric"

BRICK_LABS:

Object of class "character"

BRICK_STATAUX:

Object of class "numeric"

STAT_AUX:

Object of class "numeric"

HISTORY_NOTE:

Object of class "character"

NOTES_COUNT:

Object of class "integer"

NOTE_NUMBER:

Object of class "character"

TAGALIGN_MATVEC:

Object of class "numeric"

VOLREG_MATVEC:

Object of class "array"

VOLREG_ROTCOM:

Object of class "character"

VOLREG_CENTER_OLD:

Object of class "numeric"

VOLREG_CENTER_BASE:

Object of class "numeric"

VOLREG_ROTPARENT_IDCODE:

Object of class "character"

VOLREG_ROTPARENT_NAME:

Object of class "character"

VOLREG_GRIDPARENT_IDCODE:

Object of class "character"

VOLREG_GRIDPARENT_NAME:

Object of class "character"

VOLREG_INPUT_IDCODE:

Object of class "character"

VOLREG_INPUT_NAME:

Object of class "character"

VOLREG_BASE_IDCODE:

Object of class "character"

VOLREG_BASE_NAME:

Object of class "character"

VOLREG_ROTCOM_NUM:

Object of class "integer"

IDCODE_ANAT_PARENT:

Object of class "character"

TO3D_ZPAD:

Object of class "integer"

IDCODE_WARP_PARENT:

Object of class "character"

WARP_TYPE:

Object of class "integer"

WARP_DATA:

Object of class "numeric"

MARKS_XYZ:

Object of class "numeric"

MARKS_LAB:

Object of class "character"

MARKS_HELP:

Object of class "character"

MARKS_FLAGS:

Object of class "integer"

TAGSET_NUM:

Object of class "integer"

TAGSET_FLOATS:

Object of class "numeric"

TAGSET_LABELS:

Object of class "character"

LABEL_1:

Object of class "character"

LABEL_2:

Object of class "character"

DATASET_NAME:

Object of class "character"

DATASET_KEYWORDS:

Object of class "character"

BRICK_KEYWORDS:

Object of class "character"

Extends

Class "array", from data part.
Class "matrix", by class “array”, distance 2, with explicit test and coerce.
Class "structure", by class “array”, distance 2.
Class "vector", by class “array”, distance 3, with explicit coerce.
Class "vector", by class “array”, distance 5, with explicit test and coerce.

References

AFNI
http://afni.nimh.nih.gov/pub/dist/src/README.attributes

See also

nifti, anlz

Author

Karsten Tabelow karsten.tabelow@wias-berlin.de

Examples


showClass("afni")
#> Class "afni" [package "oro.nifti"]
#> 
#> Slots:
#>                                                         
#> Name:                     .Data             DATASET_RANK
#> Class:                    array                  integer
#>                                                         
#> Name:        DATASET_DIMENSIONS               TYPESTRING
#> Class:                  integer                character
#>                                                         
#> Name:                SCENE_DATA          ORIENT_SPECIFIC
#> Class:                  integer                  integer
#>                                                         
#> Name:                    ORIGIN                    DELTA
#> Class:                  numeric                  numeric
#>                                                         
#> Name:                TAXIS_NUMS             TAXIS_FLOATS
#> Class:                  integer                  numeric
#>                                                         
#> Name:             TAXIS_OFFSETS            IDCODE_STRING
#> Class:                  numeric                character
#>                                                         
#> Name:               IDCODE_DATE         BYTEORDER_STRING
#> Class:                character                character
#>                                                         
#> Name:               BRICK_STATS              BRICK_TYPES
#> Class:                  numeric                  integer
#>                                                         
#> Name:          BRICK_FLOAT_FACS               BRICK_LABS
#> Class:                  numeric                character
#>                                                         
#> Name:             BRICK_STATAUX                 STAT_AUX
#> Class:                  numeric                  numeric
#>                                                         
#> Name:              HISTORY_NOTE              NOTES_COUNT
#> Class:                character                  integer
#>                                                         
#> Name:               NOTE_NUMBER          TAGALIGN_MATVEC
#> Class:                character                  numeric
#>                                                         
#> Name:             VOLREG_MATVEC            VOLREG_ROTCOM
#> Class:                    array                character
#>                                                         
#> Name:         VOLREG_CENTER_OLD       VOLREG_CENTER_BASE
#> Class:                  numeric                  numeric
#>                                                         
#> Name:   VOLREG_ROTPARENT_IDCODE    VOLREG_ROTPARENT_NAME
#> Class:                character                character
#>                                                         
#> Name:  VOLREG_GRIDPARENT_IDCODE   VOLREG_GRIDPARENT_NAME
#> Class:                character                character
#>                                                         
#> Name:       VOLREG_INPUT_IDCODE        VOLREG_INPUT_NAME
#> Class:                character                character
#>                                                         
#> Name:        VOLREG_BASE_IDCODE         VOLREG_BASE_NAME
#> Class:                character                character
#>                                                         
#> Name:         VOLREG_ROTCOM_NUM       IDCODE_ANAT_PARENT
#> Class:                  integer                character
#>                                                         
#> Name:                 TO3D_ZPAD       IDCODE_WARP_PARENT
#> Class:                  integer                character
#>                                                         
#> Name:                 WARP_TYPE                WARP_DATA
#> Class:                  integer                  numeric
#>                                                         
#> Name:                 MARKS_XYZ                MARKS_LAB
#> Class:                  numeric                character
#>                                                         
#> Name:                MARKS_HELP              MARKS_FLAGS
#> Class:                character                  integer
#>                                                         
#> Name:                TAGSET_NUM            TAGSET_FLOATS
#> Class:                  integer                  numeric
#>                                                         
#> Name:             TAGSET_LABELS                  LABEL_1
#> Class:                character                character
#>                                                         
#> Name:                   LABEL_2             DATASET_NAME
#> Class:                character                character
#>                                                         
#> Name:          DATASET_KEYWORDS           BRICK_KEYWORDS
#> Class:                character                character
#> 
#> Extends: 
#> Class "array", from data part
#> Class "structure", by class "array", distance 2
#> Class "vector", by class "array", distance 3, with explicit coerce