2021-05-18T14:09:48.6921855Z ##[section]Starting: Request a runner to run this job 2021-05-18T14:09:49.3663052Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-18T14:09:49.4323291Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-18T14:09:49.5578312Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-18T14:09:49.6737535Z ##[section]Finishing: Request a runner to run this job 2021-05-18T14:09:59.6521562Z Current runner version: '2.278.0' 2021-05-18T14:09:59.6558370Z ##[group]Operating System 2021-05-18T14:09:59.6560108Z Ubuntu 2021-05-18T14:09:59.6560634Z 20.04.2 2021-05-18T14:09:59.6561167Z LTS 2021-05-18T14:09:59.6561745Z ##[endgroup] 2021-05-18T14:09:59.6562432Z ##[group]Virtual Environment 2021-05-18T14:09:59.6563187Z Environment: ubuntu-20.04 2021-05-18T14:09:59.6563791Z Version: 20210510.0 2021-05-18T14:09:59.6564958Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-18T14:09:59.6567220Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-18T14:09:59.6568662Z ##[endgroup] 2021-05-18T14:09:59.6570987Z ##[group]GITHUB_TOKEN Permissions 2021-05-18T14:09:59.6574049Z Actions: write 2021-05-18T14:09:59.6574717Z Checks: write 2021-05-18T14:09:59.6575323Z Contents: write 2021-05-18T14:09:59.6576765Z Deployments: write 2021-05-18T14:09:59.6577552Z Issues: write 2021-05-18T14:09:59.6578266Z Metadata: read 2021-05-18T14:09:59.6578841Z Packages: write 2021-05-18T14:09:59.6579494Z PullRequests: write 2021-05-18T14:09:59.6580186Z RepositoryProjects: write 2021-05-18T14:09:59.6580944Z SecurityEvents: write 2021-05-18T14:09:59.6581645Z Statuses: write 2021-05-18T14:09:59.6582392Z ##[endgroup] 2021-05-18T14:09:59.6586752Z Prepare workflow directory 2021-05-18T14:09:59.7893155Z Prepare all required actions 2021-05-18T14:09:59.7906024Z Getting action download info 2021-05-18T14:10:00.3176078Z Download action repository 'actions/checkout@v2' 2021-05-18T14:10:02.2398059Z Download action repository 'r-lib/actions@master' 2021-05-18T14:10:03.9368138Z Download action repository 'adigherman/actions@master' 2021-05-18T14:10:08.6064216Z Download action repository 'msys2/setup-msys2@v2' 2021-05-18T14:10:09.7750044Z Download action repository 'actions/cache@v1' 2021-05-18T14:10:10.8530056Z Download action repository 'actions/upload-artifact@master' 2021-05-18T14:10:12.0244193Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-18T14:10:13.2950419Z ##[group]Run actions/checkout@v2 2021-05-18T14:10:13.2951179Z with: 2021-05-18T14:10:13.2951670Z repository: neuroconductor/oasis 2021-05-18T14:10:13.2952720Z token: *** 2021-05-18T14:10:13.2953129Z ssh-strict: true 2021-05-18T14:10:13.2953674Z persist-credentials: true 2021-05-18T14:10:13.2954191Z clean: true 2021-05-18T14:10:13.2954602Z fetch-depth: 1 2021-05-18T14:10:13.2955020Z lfs: false 2021-05-18T14:10:13.2955423Z submodules: false 2021-05-18T14:10:13.2955826Z env: 2021-05-18T14:10:13.2956298Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:10:13.2956796Z TIC_DEPLOY_KEY: 2021-05-18T14:10:13.2957665Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:10:13.2958954Z GITHUB_PAT: *** 2021-05-18T14:10:13.2959877Z COVERALLS_TOKEN: *** 2021-05-18T14:10:13.2960414Z continue-on-error: true 2021-05-18T14:10:13.2960915Z VDIFFR_RUN_TESTS: 2021-05-18T14:10:13.2961348Z ##[endgroup] 2021-05-18T14:10:13.5724985Z Syncing repository: neuroconductor/oasis 2021-05-18T14:10:13.5726583Z ##[group]Getting Git version info 2021-05-18T14:10:13.5727659Z Working directory is '/home/runner/work/oasis/oasis' 2021-05-18T14:10:13.5831007Z [command]/usr/bin/git version 2021-05-18T14:10:13.6004523Z git version 2.31.1 2021-05-18T14:10:13.6098521Z ##[endgroup] 2021-05-18T14:10:13.6099422Z Deleting the contents of '/home/runner/work/oasis/oasis' 2021-05-18T14:10:13.6100713Z ##[group]Initializing the repository 2021-05-18T14:10:13.6102153Z [command]/usr/bin/git init /home/runner/work/oasis/oasis 2021-05-18T14:10:13.6195150Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-18T14:10:13.6196671Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-18T14:10:13.6197564Z hint: of your new repositories, which will suppress this warning, call: 2021-05-18T14:10:13.6198190Z hint: 2021-05-18T14:10:13.6200618Z hint: git config --global init.defaultBranch 2021-05-18T14:10:13.6210263Z hint: 2021-05-18T14:10:13.6211256Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-18T14:10:13.6212350Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-18T14:10:13.6213048Z hint: 2021-05-18T14:10:13.6213613Z hint: git branch -m 2021-05-18T14:10:13.6215009Z Initialized empty Git repository in /home/runner/work/oasis/oasis/.git/ 2021-05-18T14:10:13.6216009Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/oasis 2021-05-18T14:10:13.6400638Z ##[endgroup] 2021-05-18T14:10:13.6401753Z ##[group]Disabling automatic garbage collection 2021-05-18T14:10:13.6404932Z [command]/usr/bin/git config --local gc.auto 0 2021-05-18T14:10:13.6421541Z ##[endgroup] 2021-05-18T14:10:13.6428399Z ##[group]Setting up auth 2021-05-18T14:10:13.6438068Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-18T14:10:13.6495077Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-18T14:10:13.7010798Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-18T14:10:13.7059350Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-18T14:10:13.7330798Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-18T14:10:13.7426220Z ##[endgroup] 2021-05-18T14:10:13.7427268Z ##[group]Fetching the repository 2021-05-18T14:10:13.7439576Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +78c0c99b1943a5c8c463550111d1597640451325:refs/tags/3.0.1.s 2021-05-18T14:10:14.6365981Z remote: Enumerating objects: 68, done. 2021-05-18T14:10:14.6368895Z remote: Counting objects: 1% (1/68) 2021-05-18T14:10:14.6379351Z remote: Counting objects: 2% (2/68) 2021-05-18T14:10:14.6380371Z remote: Counting objects: 4% (3/68) 2021-05-18T14:10:14.6381436Z remote: Counting objects: 5% (4/68) 2021-05-18T14:10:14.6385263Z remote: Counting objects: 7% (5/68) 2021-05-18T14:10:14.6386234Z remote: Counting objects: 8% (6/68) 2021-05-18T14:10:14.6386982Z remote: Counting objects: 10% (7/68) 2021-05-18T14:10:14.6387665Z remote: Counting objects: 11% (8/68) 2021-05-18T14:10:14.6388364Z remote: Counting objects: 13% (9/68) 2021-05-18T14:10:14.6389013Z remote: Counting objects: 14% (10/68) 2021-05-18T14:10:14.6389655Z remote: Counting objects: 16% (11/68) 2021-05-18T14:10:14.6390280Z remote: Counting objects: 17% (12/68) 2021-05-18T14:10:14.6390934Z remote: Counting objects: 19% (13/68) 2021-05-18T14:10:14.6391805Z remote: Counting objects: 20% (14/68) 2021-05-18T14:10:14.6392397Z remote: Counting objects: 22% (15/68) 2021-05-18T14:10:14.6393182Z remote: Counting objects: 23% (16/68) 2021-05-18T14:10:14.6393789Z remote: Counting objects: 25% (17/68) 2021-05-18T14:10:14.6394437Z remote: Counting objects: 26% (18/68) 2021-05-18T14:10:14.6395051Z remote: Counting objects: 27% (19/68) 2021-05-18T14:10:14.6408311Z remote: Counting objects: 29% (20/68) 2021-05-18T14:10:14.6409372Z remote: Counting objects: 30% (21/68) 2021-05-18T14:10:14.6410038Z remote: Counting objects: 32% (22/68) 2021-05-18T14:10:14.6410633Z remote: Counting objects: 33% (23/68) 2021-05-18T14:10:14.6411204Z remote: Counting objects: 35% (24/68) 2021-05-18T14:10:14.6411787Z remote: Counting objects: 36% (25/68) 2021-05-18T14:10:14.6412357Z remote: Counting objects: 38% (26/68) 2021-05-18T14:10:14.6412964Z remote: Counting objects: 39% (27/68) 2021-05-18T14:10:14.6413831Z remote: Counting objects: 41% (28/68) 2021-05-18T14:10:14.6414379Z remote: Counting objects: 42% (29/68) 2021-05-18T14:10:14.6414931Z remote: Counting objects: 44% (30/68) 2021-05-18T14:10:14.6415486Z remote: Counting objects: 45% (31/68) 2021-05-18T14:10:14.6416026Z remote: Counting objects: 47% (32/68) 2021-05-18T14:10:14.6416770Z remote: Counting objects: 48% (33/68) 2021-05-18T14:10:14.6417326Z remote: Counting objects: 50% (34/68) 2021-05-18T14:10:14.6418012Z remote: Counting objects: 51% (35/68) 2021-05-18T14:10:14.6418543Z remote: Counting objects: 52% (36/68) 2021-05-18T14:10:14.6419057Z remote: Counting objects: 54% (37/68) 2021-05-18T14:10:14.6419771Z remote: Counting objects: 55% (38/68) 2021-05-18T14:10:14.6420323Z remote: Counting objects: 57% (39/68) 2021-05-18T14:10:14.6420860Z remote: Counting objects: 58% (40/68) 2021-05-18T14:10:14.6421427Z remote: Counting objects: 60% (41/68) 2021-05-18T14:10:14.6421967Z remote: Counting objects: 61% (42/68) 2021-05-18T14:10:14.6422561Z remote: Counting objects: 63% (43/68) 2021-05-18T14:10:14.6423136Z remote: Counting objects: 64% (44/68) 2021-05-18T14:10:14.6423671Z remote: Counting objects: 66% (45/68) 2021-05-18T14:10:14.6424220Z remote: Counting objects: 67% (46/68) 2021-05-18T14:10:14.6424757Z remote: Counting objects: 69% (47/68) 2021-05-18T14:10:14.6425311Z remote: Counting objects: 70% (48/68) 2021-05-18T14:10:14.6425861Z remote: Counting objects: 72% (49/68) 2021-05-18T14:10:14.6426396Z remote: Counting objects: 73% (50/68) 2021-05-18T14:10:14.6426944Z remote: Counting objects: 75% (51/68) 2021-05-18T14:10:14.6427494Z remote: Counting objects: 76% (52/68) 2021-05-18T14:10:14.6428185Z remote: Counting objects: 77% (53/68) 2021-05-18T14:10:14.6428719Z remote: Counting objects: 79% (54/68) 2021-05-18T14:10:14.6430294Z remote: Counting objects: 80% (55/68) 2021-05-18T14:10:14.6431023Z remote: Counting objects: 82% (56/68) 2021-05-18T14:10:14.6431593Z remote: Counting objects: 83% (57/68) 2021-05-18T14:10:14.6432140Z remote: Counting objects: 85% (58/68) 2021-05-18T14:10:14.6432696Z remote: Counting objects: 86% (59/68) 2021-05-18T14:10:14.6433237Z remote: Counting objects: 88% (60/68) 2021-05-18T14:10:14.6433797Z remote: Counting objects: 89% (61/68) 2021-05-18T14:10:14.6434352Z remote: Counting objects: 91% (62/68) 2021-05-18T14:10:14.6434890Z remote: Counting objects: 92% (63/68) 2021-05-18T14:10:14.6435443Z remote: Counting objects: 94% (64/68) 2021-05-18T14:10:14.6435994Z remote: Counting objects: 95% (65/68) 2021-05-18T14:10:14.6436532Z remote: Counting objects: 97% (66/68) 2021-05-18T14:10:14.6437081Z remote: Counting objects: 98% (67/68) 2021-05-18T14:10:14.6437636Z remote: Counting objects: 100% (68/68) 2021-05-18T14:10:14.6438219Z remote: Counting objects: 100% (68/68), done. 2021-05-18T14:10:14.6438833Z remote: Compressing objects: 1% (1/51) 2021-05-18T14:10:14.6439433Z remote: Compressing objects: 3% (2/51) 2021-05-18T14:10:14.6440040Z remote: Compressing objects: 5% (3/51) 2021-05-18T14:10:14.6440633Z remote: Compressing objects: 7% (4/51) 2021-05-18T14:10:14.6441261Z remote: Compressing objects: 9% (5/51) 2021-05-18T14:10:14.6441863Z remote: Compressing objects: 11% (6/51) 2021-05-18T14:10:14.6442452Z remote: Compressing objects: 13% (7/51) 2021-05-18T14:10:14.6443052Z remote: Compressing objects: 15% (8/51) 2021-05-18T14:10:14.6443655Z remote: Compressing objects: 17% (9/51) 2021-05-18T14:10:14.6444250Z remote: Compressing objects: 19% (10/51) 2021-05-18T14:10:14.6444859Z remote: Compressing objects: 21% (11/51) 2021-05-18T14:10:14.6445573Z remote: Compressing objects: 23% (12/51) 2021-05-18T14:10:14.6446178Z remote: Compressing objects: 25% (13/51) 2021-05-18T14:10:14.6446781Z remote: Compressing objects: 27% (14/51) 2021-05-18T14:10:14.6447368Z remote: Compressing objects: 29% (15/51) 2021-05-18T14:10:14.6447967Z remote: Compressing objects: 31% (16/51) 2021-05-18T14:10:14.6448568Z remote: Compressing objects: 33% (17/51) 2021-05-18T14:10:14.6449405Z remote: Compressing objects: 35% (18/51) 2021-05-18T14:10:14.6450013Z remote: Compressing objects: 37% (19/51) 2021-05-18T14:10:14.6450601Z remote: Compressing objects: 39% (20/51) 2021-05-18T14:10:14.6451208Z remote: Compressing objects: 41% (21/51) 2021-05-18T14:10:14.6451810Z remote: Compressing objects: 43% (22/51) 2021-05-18T14:10:14.6452398Z remote: Compressing objects: 45% (23/51) 2021-05-18T14:10:14.6453003Z remote: Compressing objects: 47% (24/51) 2021-05-18T14:10:14.6453603Z remote: Compressing objects: 49% (25/51) 2021-05-18T14:10:14.6454207Z remote: Compressing objects: 50% (26/51) 2021-05-18T14:10:14.6454808Z remote: Compressing objects: 52% (27/51) 2021-05-18T14:10:14.6455647Z remote: Compressing objects: 54% (28/51) 2021-05-18T14:10:14.6456236Z remote: Compressing objects: 56% (29/51) 2021-05-18T14:10:14.6456838Z remote: Compressing objects: 58% (30/51) 2021-05-18T14:10:14.6457428Z remote: Compressing objects: 60% (31/51) 2021-05-18T14:10:14.6458035Z remote: Compressing objects: 62% (32/51) 2021-05-18T14:10:14.6458638Z remote: Compressing objects: 64% (33/51) 2021-05-18T14:10:14.6459224Z remote: Compressing objects: 66% (34/51) 2021-05-18T14:10:14.6460309Z remote: Compressing objects: 68% (35/51) 2021-05-18T14:10:14.6461030Z remote: Compressing objects: 70% (36/51) 2021-05-18T14:10:14.6461618Z remote: Compressing objects: 72% (37/51) 2021-05-18T14:10:14.6462886Z remote: Compressing objects: 74% (38/51) 2021-05-18T14:10:14.6463508Z remote: Compressing objects: 76% (39/51) 2021-05-18T14:10:14.6464113Z remote: Compressing objects: 78% (40/51) 2021-05-18T14:10:14.6464713Z remote: Compressing objects: 80% (41/51) 2021-05-18T14:10:14.6465303Z remote: Compressing objects: 82% (42/51) 2021-05-18T14:10:14.6465905Z remote: Compressing objects: 84% (43/51) 2021-05-18T14:10:14.6466490Z remote: Compressing objects: 86% (44/51) 2021-05-18T14:10:14.6467092Z remote: Compressing objects: 88% (45/51) 2021-05-18T14:10:14.6467694Z remote: Compressing objects: 90% (46/51) 2021-05-18T14:10:14.6468280Z remote: Compressing objects: 92% (47/51) 2021-05-18T14:10:14.6468882Z remote: Compressing objects: 94% (48/51) 2021-05-18T14:10:14.6469487Z remote: Compressing objects: 96% (49/51) 2021-05-18T14:10:14.6470078Z remote: Compressing objects: 98% (50/51) 2021-05-18T14:10:14.6470695Z remote: Compressing objects: 100% (51/51) 2021-05-18T14:10:14.6471312Z remote: Compressing objects: 100% (51/51), done. 2021-05-18T14:10:15.4077713Z remote: Total 68 (delta 14), reused 49 (delta 13), pack-reused 0 2021-05-18T14:10:15.4272225Z From https://github.com/neuroconductor/oasis 2021-05-18T14:10:15.4274277Z * [new ref] 78c0c99b1943a5c8c463550111d1597640451325 -> 3.0.1.s 2021-05-18T14:10:15.4300670Z ##[endgroup] 2021-05-18T14:10:15.4302510Z ##[group]Determining the checkout info 2021-05-18T14:10:15.4304113Z ##[endgroup] 2021-05-18T14:10:15.4305274Z ##[group]Checking out the ref 2021-05-18T14:10:15.4311579Z [command]/usr/bin/git checkout --progress --force refs/tags/3.0.1.s 2021-05-18T14:10:15.4485103Z Note: switching to 'refs/tags/3.0.1.s'. 2021-05-18T14:10:15.4486028Z 2021-05-18T14:10:15.4487319Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-18T14:10:15.4488803Z changes and commit them, and you can discard any commits you make in this 2021-05-18T14:10:15.4490318Z state without impacting any branches by switching back to a branch. 2021-05-18T14:10:15.4491109Z 2021-05-18T14:10:15.4491939Z If you want to create a new branch to retain commits you create, you may 2021-05-18T14:10:15.4493622Z do so (now or later) by using -c with the switch command. Example: 2021-05-18T14:10:15.4494380Z 2021-05-18T14:10:15.4511074Z git switch -c 2021-05-18T14:10:15.4511485Z 2021-05-18T14:10:15.4511921Z Or undo this operation with: 2021-05-18T14:10:15.4512245Z 2021-05-18T14:10:15.4512767Z git switch - 2021-05-18T14:10:15.4513046Z 2021-05-18T14:10:15.4513691Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-18T14:10:15.4514260Z 2021-05-18T14:10:15.4514706Z HEAD is now at 78c0c99 Version id 85 stable 2021-05-18T14:10:15.4515507Z ##[endgroup] 2021-05-18T14:10:15.4570015Z [command]/usr/bin/git log -1 --format='%H' 2021-05-18T14:10:15.4607688Z '78c0c99b1943a5c8c463550111d1597640451325' 2021-05-18T14:10:15.4796658Z ##[group]Run r-lib/actions/setup-r@master 2021-05-18T14:10:15.4797220Z with: 2021-05-18T14:10:15.4797611Z r-version: devel 2021-05-18T14:10:15.4798025Z Ncpus: 1 2021-05-18T14:10:15.4798471Z crayon.enabled: NULL 2021-05-18T14:10:15.4799035Z remove-openmp-macos: true 2021-05-18T14:10:15.4799642Z http-user-agent: default 2021-05-18T14:10:15.4800134Z install-r: true 2021-05-18T14:10:15.4800903Z windows-path-include-mingw: true 2021-05-18T14:10:15.4801461Z env: 2021-05-18T14:10:15.4802419Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:10:15.4802925Z TIC_DEPLOY_KEY: 2021-05-18T14:10:15.4803776Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:10:15.4805569Z GITHUB_PAT: *** 2021-05-18T14:10:15.4806443Z COVERALLS_TOKEN: *** 2021-05-18T14:10:15.4806957Z continue-on-error: true 2021-05-18T14:10:15.4807477Z VDIFFR_RUN_TESTS: 2021-05-18T14:10:15.4807906Z ##[endgroup] 2021-05-18T14:10:16.8985501Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-18T14:10:18.7563182Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-18T14:10:18.7565457Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-18T14:10:18.7567361Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-18T14:10:18.7675029Z Hit:4 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-18T14:10:18.7676964Z Get:5 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-18T14:10:18.9119144Z Get:6 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-18T14:10:18.9627471Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-18T14:10:19.0403724Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-18T14:10:19.0647050Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [223 kB] 2021-05-18T14:10:19.0703293Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-18T14:10:19.0705030Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-18T14:10:19.0706671Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-18T14:10:19.0713192Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [777 kB] 2021-05-18T14:10:19.0850873Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [167 kB] 2021-05-18T14:10:19.0874011Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.5 kB] 2021-05-18T14:10:19.1122994Z Get:16 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-18T14:10:19.3428001Z Hit:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-18T14:10:19.4280519Z Get:18 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [656 kB] 2021-05-18T14:10:19.4921702Z Get:19 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [132 kB] 2021-05-18T14:10:19.4942000Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-18T14:10:19.4944345Z Get:21 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-18T14:10:19.4972420Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-18T14:10:19.4974024Z Get:23 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [568 kB] 2021-05-18T14:10:19.5101300Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [85.5 kB] 2021-05-18T14:10:19.5102921Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.1 kB] 2021-05-18T14:10:19.6097834Z Get:26 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.4 kB] 2021-05-18T14:10:27.6468309Z Fetched 4559 kB in 1s (3654 kB/s) 2021-05-18T14:10:28.6298811Z Reading package lists... 2021-05-18T14:10:28.6571739Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-18T14:10:31.0148545Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-18T14:10:31.0969700Z Reading package lists... 2021-05-18T14:10:31.2747181Z Building dependency tree... 2021-05-18T14:10:31.2766637Z Reading state information... 2021-05-18T14:10:31.4492048Z The following additional packages will be installed: 2021-05-18T14:10:31.4494155Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-18T14:10:31.4495854Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-18T14:10:31.4499464Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-18T14:10:31.4503060Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-18T14:10:31.4504823Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-18T14:10:31.4506962Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-18T14:10:31.4508380Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-18T14:10:31.4509926Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-18T14:10:31.4511298Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-18T14:10:31.4512604Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-18T14:10:31.4514176Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-18T14:10:31.4515528Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-18T14:10:31.4516991Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-18T14:10:31.4518410Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-18T14:10:31.4519676Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-18T14:10:31.4522376Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-18T14:10:31.4523685Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-18T14:10:31.4525214Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-18T14:10:31.4527422Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-18T14:10:31.4530154Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-18T14:10:31.4531695Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-18T14:10:31.4533058Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-18T14:10:31.4535449Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-18T14:10:31.4537240Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-18T14:10:31.4538802Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-18T14:10:31.4540256Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-18T14:10:31.4543040Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-18T14:10:31.4545347Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-18T14:10:31.4730173Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-18T14:10:31.4732109Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-18T14:10:31.4733385Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-18T14:10:31.4734919Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-18T14:10:31.4736483Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-18T14:10:31.4738262Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-18T14:10:31.4739694Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-18T14:10:31.4741487Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-18T14:10:31.4742972Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-18T14:10:31.4744103Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-18T14:10:31.4746185Z Suggested packages: 2021-05-18T14:10:31.4747091Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-18T14:10:31.4748650Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-18T14:10:31.4750121Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-18T14:10:31.4751756Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-18T14:10:31.4753352Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-18T14:10:31.4754874Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-18T14:10:31.4756271Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-18T14:10:31.4757814Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-18T14:10:31.4759692Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-18T14:10:31.4760940Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-18T14:10:31.9797766Z The following NEW packages will be installed: 2021-05-18T14:10:31.9800797Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-18T14:10:31.9802339Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-18T14:10:31.9806415Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-18T14:10:31.9808681Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-18T14:10:31.9810434Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-18T14:10:31.9811992Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-18T14:10:31.9813788Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-18T14:10:31.9815578Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-18T14:10:31.9817382Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-18T14:10:31.9819137Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-18T14:10:31.9820673Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-18T14:10:31.9828395Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-18T14:10:31.9830430Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-18T14:10:31.9832282Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-18T14:10:31.9833957Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-18T14:10:31.9835666Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-18T14:10:31.9837336Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-18T14:10:31.9839270Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-18T14:10:31.9841895Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-18T14:10:31.9843386Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-18T14:10:31.9844825Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-18T14:10:31.9846169Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-18T14:10:31.9847836Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-18T14:10:31.9849844Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-18T14:10:31.9851541Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-18T14:10:31.9852968Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-18T14:10:31.9854721Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-18T14:10:31.9856126Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-18T14:10:31.9857689Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-18T14:10:31.9859189Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-18T14:10:31.9860657Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-18T14:10:31.9862350Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-18T14:10:31.9864299Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-18T14:10:31.9866047Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-18T14:10:31.9867982Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-18T14:10:31.9869547Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-18T14:10:31.9870853Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-18T14:10:31.9871955Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-18T14:10:32.0111361Z 0 upgraded, 130 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:10:32.0112283Z Need to get 8648 kB of archives. 2021-05-18T14:10:32.0112957Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-18T14:10:32.0114892Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-18T14:10:32.0151163Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-18T14:10:32.0165784Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-18T14:10:32.0176609Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-18T14:10:32.0183147Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-18T14:10:32.0206814Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-18T14:10:32.0213272Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-18T14:10:32.0223694Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-18T14:10:32.0228666Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-18T14:10:32.0231708Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-18T14:10:32.0247392Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-18T14:10:32.0249784Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-18T14:10:32.0257441Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-18T14:10:32.0266523Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-18T14:10:32.0275470Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-18T14:10:32.0284004Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-18T14:10:32.0303846Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-18T14:10:32.0306039Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-18T14:10:32.0317051Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-18T14:10:32.0471304Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-18T14:10:32.0482766Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-18T14:10:32.0508732Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-18T14:10:32.0524777Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-18T14:10:32.0545201Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-18T14:10:32.0562040Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-18T14:10:32.0716942Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-18T14:10:32.0728081Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-18T14:10:32.0742573Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-18T14:10:32.0759913Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-18T14:10:32.0769622Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-18T14:10:32.0778213Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-18T14:10:32.0786873Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-18T14:10:32.0795617Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-18T14:10:32.0806240Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-18T14:10:32.0815004Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-18T14:10:32.0825830Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-18T14:10:32.0835968Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-18T14:10:32.0845263Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-18T14:10:32.0853219Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-18T14:10:32.0861826Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-18T14:10:32.0866844Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-18T14:10:32.0875573Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-18T14:10:32.0885902Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-18T14:10:32.0893683Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-18T14:10:32.0903439Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-18T14:10:32.0915429Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-18T14:10:32.0931254Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-18T14:10:32.0935962Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-18T14:10:32.0945186Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-18T14:10:32.0951689Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-18T14:10:32.0959289Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-18T14:10:32.0999225Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-18T14:10:32.1006378Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-18T14:10:32.1015189Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-18T14:10:32.1024608Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-18T14:10:32.1033567Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-18T14:10:32.1039146Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-18T14:10:32.1047767Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-18T14:10:32.1057453Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-18T14:10:32.1069437Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-18T14:10:32.1104531Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-18T14:10:32.1119575Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-18T14:10:32.1131684Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-18T14:10:32.1140126Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-18T14:10:32.1145699Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-18T14:10:32.1156147Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-18T14:10:32.1161848Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-18T14:10:32.1175063Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-18T14:10:32.1262590Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-18T14:10:32.1265083Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-18T14:10:32.1266953Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-18T14:10:32.1268716Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-18T14:10:32.1270423Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-18T14:10:32.1272125Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-18T14:10:32.1274140Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-18T14:10:32.1275799Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-18T14:10:32.1277461Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-18T14:10:32.1288203Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-18T14:10:32.1296387Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-18T14:10:32.1302807Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-18T14:10:32.1368485Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-18T14:10:32.1371130Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-18T14:10:32.1378560Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-18T14:10:32.1386398Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-18T14:10:32.1409014Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-18T14:10:32.1410865Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-18T14:10:32.1424250Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-18T14:10:32.1437762Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-18T14:10:32.1448544Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-18T14:10:32.1457623Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-18T14:10:32.1463833Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-18T14:10:32.1480749Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-18T14:10:32.1483405Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-18T14:10:32.1501625Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-18T14:10:32.1503407Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-18T14:10:32.1508518Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-18T14:10:32.1516782Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-18T14:10:32.1550823Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-18T14:10:32.1552673Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-18T14:10:32.1554433Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-18T14:10:32.1556198Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-18T14:10:32.1602500Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-18T14:10:32.1634508Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-18T14:10:32.1643669Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-18T14:10:32.1656873Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-18T14:10:32.1658872Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-18T14:10:32.1667028Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-18T14:10:32.1674917Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-18T14:10:32.1707789Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-18T14:10:32.1743335Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-18T14:10:32.1824547Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-18T14:10:32.1835300Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-18T14:10:32.1841845Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-18T14:10:32.1853533Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-18T14:10:32.1864317Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-18T14:10:32.1866186Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-18T14:10:32.1895338Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-18T14:10:32.1897168Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-18T14:10:32.1904735Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-18T14:10:32.1944036Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-18T14:10:32.1946515Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-18T14:10:32.1948321Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-18T14:10:32.1950628Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-18T14:10:32.1980302Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-18T14:10:32.1982574Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-18T14:10:32.1983929Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-18T14:10:32.2184486Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-18T14:10:32.2188654Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-18T14:10:32.2199569Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-18T14:10:32.2290397Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-18T14:10:33.0803780Z Fetched 8648 kB in 0s (36.7 MB/s) 2021-05-18T14:10:33.1252048Z Selecting previously unselected package dctrl-tools. 2021-05-18T14:10:33.1483786Z (Reading database ... 2021-05-18T14:10:33.1484510Z (Reading database ... 5% 2021-05-18T14:10:33.1485128Z (Reading database ... 10% 2021-05-18T14:10:33.1485598Z (Reading database ... 15% 2021-05-18T14:10:33.1486553Z (Reading database ... 20% 2021-05-18T14:10:33.1487153Z (Reading database ... 25% 2021-05-18T14:10:33.1487611Z (Reading database ... 30% 2021-05-18T14:10:33.1490004Z (Reading database ... 35% 2021-05-18T14:10:33.1490523Z (Reading database ... 40% 2021-05-18T14:10:33.1490983Z (Reading database ... 45% 2021-05-18T14:10:33.1491461Z (Reading database ... 50% 2021-05-18T14:10:33.1912200Z (Reading database ... 55% 2021-05-18T14:10:33.2499082Z (Reading database 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previously unselected package libfile-homedir-perl. 2021-05-18T14:10:33.9952159Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb ... 2021-05-18T14:10:33.9969075Z Unpacking libfile-homedir-perl (1.004-1) ... 2021-05-18T14:10:34.0410634Z Selecting previously unselected package libio-pty-perl. 2021-05-18T14:10:34.0702001Z Preparing to unpack .../003-libio-pty-perl_1%3a1.12-1_amd64.deb ... 2021-05-18T14:10:34.0714073Z Unpacking libio-pty-perl (1:1.12-1) ... 2021-05-18T14:10:34.1013829Z Selecting previously unselected package libipc-run-perl. 2021-05-18T14:10:34.1305981Z Preparing to unpack .../004-libipc-run-perl_20180523.0-2_all.deb ... 2021-05-18T14:10:34.1316348Z Unpacking libipc-run-perl (20180523.0-2) ... 2021-05-18T14:10:34.1834161Z Selecting previously unselected package libclass-method-modifiers-perl. 2021-05-18T14:10:34.2108659Z Preparing to unpack .../005-libclass-method-modifiers-perl_2.13-1_all.deb ... 2021-05-18T14:10:34.2123263Z Unpacking libclass-method-modifiers-perl (2.13-1) ... 2021-05-18T14:10:34.2477341Z Selecting previously unselected package libb-hooks-op-check-perl. 2021-05-18T14:10:34.2770856Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ... 2021-05-18T14:10:34.2780798Z Unpacking libb-hooks-op-check-perl (0.22-1build2) ... 2021-05-18T14:10:34.3069917Z Selecting previously unselected package libdynaloader-functions-perl. 2021-05-18T14:10:34.3388486Z Preparing to unpack .../007-libdynaloader-functions-perl_0.003-1_all.deb ... 2021-05-18T14:10:34.3420150Z Unpacking libdynaloader-functions-perl (0.003-1) ... 2021-05-18T14:10:34.3693826Z Selecting previously unselected package libdevel-callchecker-perl. 2021-05-18T14:10:34.4026367Z Preparing to unpack .../008-libdevel-callchecker-perl_0.008-1ubuntu1_amd64.deb ... 2021-05-18T14:10:34.4047258Z Unpacking libdevel-callchecker-perl (0.008-1ubuntu1) ... 2021-05-18T14:10:34.4370606Z Selecting previously unselected package libparams-classify-perl. 2021-05-18T14:10:34.4620076Z Preparing to unpack .../009-libparams-classify-perl_0.015-1build2_amd64.deb ... 2021-05-18T14:10:34.4635562Z Unpacking libparams-classify-perl (0.015-1build2) ... 2021-05-18T14:10:34.5948786Z Selecting previously unselected package libmodule-runtime-perl. 2021-05-18T14:10:34.6275376Z Preparing to unpack .../010-libmodule-runtime-perl_0.016-1_all.deb ... 2021-05-18T14:10:34.6289852Z Unpacking libmodule-runtime-perl (0.016-1) ... 2021-05-18T14:10:34.6653631Z Selecting previously unselected package libimport-into-perl. 2021-05-18T14:10:34.6988290Z Preparing to unpack .../011-libimport-into-perl_1.002005-1_all.deb ... 2021-05-18T14:10:34.7021362Z Unpacking libimport-into-perl (1.002005-1) ... 2021-05-18T14:10:34.7304851Z Selecting previously unselected package librole-tiny-perl. 2021-05-18T14:10:34.7646552Z Preparing to unpack .../012-librole-tiny-perl_2.001004-1_all.deb ... 2021-05-18T14:10:34.7657506Z Unpacking librole-tiny-perl 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previously unselected package intltool-debian. 2021-05-18T14:10:36.0031506Z Preparing to unpack .../025-intltool-debian_0.35.0+20060710.5_all.deb ... 2021-05-18T14:10:36.0040972Z Unpacking intltool-debian (0.35.0+20060710.5) ... 2021-05-18T14:10:36.0333740Z Selecting previously unselected package libapt-pkg-perl. 2021-05-18T14:10:36.0648743Z Preparing to unpack .../026-libapt-pkg-perl_0.1.36build3_amd64.deb ... 2021-05-18T14:10:36.0670942Z Unpacking libapt-pkg-perl (0.1.36build3) ... 2021-05-18T14:10:36.1093873Z Selecting previously unselected package libarchive-zip-perl. 2021-05-18T14:10:36.1361070Z Preparing to unpack .../027-libarchive-zip-perl_1.67-2_all.deb ... 2021-05-18T14:10:36.1374509Z Unpacking libarchive-zip-perl (1.67-2) ... 2021-05-18T14:10:36.1818394Z Selecting previously unselected package libarray-intspan-perl. 2021-05-18T14:10:36.2058809Z Preparing to unpack .../028-libarray-intspan-perl_2.003-1_all.deb ... 2021-05-18T14:10:36.2069406Z Unpacking libarray-intspan-perl 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Done 2021-05-18T14:11:10.6120954Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-18T14:11:10.6259605Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-18T14:11:10.6586801Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-18T14:11:10.6587395Z env: 2021-05-18T14:11:10.6587863Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:11:10.6588383Z TIC_DEPLOY_KEY: 2021-05-18T14:11:10.6589825Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:11:10.6591787Z GITHUB_PAT: *** 2021-05-18T14:11:10.6592686Z COVERALLS_TOKEN: *** 2021-05-18T14:11:10.6593251Z continue-on-error: true 2021-05-18T14:11:10.6593754Z VDIFFR_RUN_TESTS: 2021-05-18T14:11:10.6594289Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:11:10.6594780Z TZ: UTC 2021-05-18T14:11:10.6595190Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:11:10.6595647Z NOT_CRAN: true 2021-05-18T14:11:10.6596049Z ##[endgroup] 2021-05-18T14:11:10.7259097Z [command]sudo apt-get install -y texinfo 2021-05-18T14:11:10.9413051Z Reading package lists... 2021-05-18T14:11:11.1390035Z Building dependency tree... 2021-05-18T14:11:11.1413177Z Reading state information... 2021-05-18T14:11:11.3766771Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-18T14:11:11.3768671Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:11:12.0183860Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-18T14:11:12.0405609Z --2021-05-18 14:11:12-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-18T14:11:12.0559682Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-18T14:11:12.0569599Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-18T14:11:12.0726941Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-18T14:11:12.0732489Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-18T14:11:12.0734709Z --2021-05-18 14:11:12-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-18T14:11:12.1077473Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-18T14:11:12.1716388Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-18T14:11:12.7419958Z HTTP request sent, awaiting response... 302 Found 2021-05-18T14:11:12.7426301Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=ZPRXkR5h1TgQziDSaWmL8E0y7HJcDKqHa6e3X%2FOfdkA%3D&st=2021-05-18T14%3A10%3A12Z&se=2021-05-18T14%3A16%3A12Z&sp=r [following] 2021-05-18T14:11:12.7431742Z --2021-05-18 14:11:12-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=ZPRXkR5h1TgQziDSaWmL8E0y7HJcDKqHa6e3X%2FOfdkA%3D&st=2021-05-18T14%3A10%3A12Z&se=2021-05-18T14%3A16%3A12Z&sp=r 2021-05-18T14:11:12.7659804Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-18T14:11:12.8291824Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-18T14:11:13.1110615Z HTTP request sent, awaiting response... 200 OK 2021-05-18T14:11:13.1114590Z Length: 67306919 (64M) [application/octet-stream] 2021-05-18T14:11:13.1116902Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-18T14:11:13.6800606Z 2021-05-18T14:11:15.6959570Z 0K ........ ........ ........ ........ 49% 13.2M 2s 2021-05-18T14:11:20.3997119Z 32768K ........ ........ ........ ........ 99% 6.67M 0s 2021-05-18T14:11:20.3998441Z 65536K 100% 2.90M=7.3s 2021-05-18T14:11:20.3999013Z 2021-05-18T14:11:20.4000680Z 2021-05-18 14:11:20 (8.81 MB/s) - ‘TinyTeX.tar.gz’ saved [67306919/67306919] 2021-05-18T14:11:20.4001149Z 2021-05-18T14:11:22.4807516Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-18T14:11:22.4810516Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-18T14:11:22.8278787Z ##[group]Run tlmgr update --self 2021-05-18T14:11:22.8279584Z tlmgr update --self 2021-05-18T14:11:22.8280580Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-18T14:11:22.8281603Z tlmgr update --all 2021-05-18T14:11:22.8333332Z shell: /usr/bin/bash -e {0} 2021-05-18T14:11:22.8333799Z env: 2021-05-18T14:11:22.8334426Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:11:22.8334968Z TIC_DEPLOY_KEY: 2021-05-18T14:11:22.8335978Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:11:22.8337898Z GITHUB_PAT: *** 2021-05-18T14:11:22.8338810Z COVERALLS_TOKEN: *** 2021-05-18T14:11:22.8339416Z continue-on-error: true 2021-05-18T14:11:22.8340110Z VDIFFR_RUN_TESTS: 2021-05-18T14:11:22.8340671Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:11:22.8341260Z TZ: UTC 2021-05-18T14:11:22.8341710Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:11:22.8342495Z NOT_CRAN: true 2021-05-18T14:11:22.8343026Z ##[endgroup] 2021-05-18T14:11:26.2103921Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-18T14:11:26.3742331Z [1/1, ??:??/??:??] update: texlive.infra [226k] (59199 -> 59237) ... done 2021-05-18T14:11:26.3743620Z running mktexlsr ... 2021-05-18T14:11:26.4705599Z done running mktexlsr. 2021-05-18T14:11:26.4983159Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-18T14:11:26.4984822Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-18T14:11:28.0096817Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-18T14:11:28.0098841Z [1/89, ??:??/??:??] install: addliga [1k] 2021-05-18T14:11:28.0869500Z [2/89, 00:01/09:21:13] install: ae [57k] 2021-05-18T14:11:28.1422149Z [3/89, 00:01/07:38] install: auto-pst-pdf-lua [3k] 2021-05-18T14:11:28.1837693Z [4/89, 00:01/07:19] install: barracuda [30k] 2021-05-18T14:11:28.2378585Z [5/89, 00:01/04:54] install: bezierplot [8k] 2021-05-18T14:11:28.6399095Z [6/89, 00:01/04:30] install: biber.x86_64-linux [22986k] 2021-05-18T14:11:30.0764109Z [7/89, 00:03/00:03] install: biber [1k] 2021-05-18T14:11:30.1554126Z [8/89, 00:03/00:03] install: biblatex [238k] 2021-05-18T14:11:30.2288877Z [9/89, 00:03/00:03] install: checkcites.x86_64-linux [1k] 2021-05-18T14:11:30.2698993Z [10/89, 00:03/00:03] install: checkcites [7k] 2021-05-18T14:11:30.3113911Z [11/89, 00:03/00:03] install: chickenize [15k] 2021-05-18T14:11:30.3542575Z [12/89, 00:03/00:03] install: chinese-jfm [3k] 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2021-05-18T14:11:33.5790730Z [79/89, 00:06/00:06] install: thumbpdf.x86_64-linux [1k] 2021-05-18T14:11:33.6300635Z [80/89, 00:06/00:06] install: thumbpdf [19k] 2021-05-18T14:11:33.6754437Z [81/89, 00:06/00:06] install: tlshell.x86_64-linux [1k] 2021-05-18T14:11:33.7196173Z [82/89, 00:06/00:06] install: tlshell [29k] 2021-05-18T14:11:33.7680411Z [83/89, 00:06/00:06] install: typewriter [25k] 2021-05-18T14:11:33.8206404Z [84/89, 00:06/00:06] install: uninormalize [6k] 2021-05-18T14:11:33.8655552Z [85/89, 00:06/00:06] install: upquote [2k] 2021-05-18T14:11:33.9182594Z [86/89, 00:06/00:06] install: xdvi.x86_64-linux [530k] 2021-05-18T14:11:34.0191429Z [87/89, 00:06/00:06] install: xdvi [7k] 2021-05-18T14:11:34.0640962Z [88/89, 00:07/00:07] install: collection-basic [1k] 2021-05-18T14:11:34.1091505Z [89/89, 00:07/00:07] install: collection-luatex [1k] 2021-05-18T14:11:34.1317199Z running mktexlsr ... 2021-05-18T14:11:34.2308571Z done running mktexlsr. 2021-05-18T14:11:34.2635094Z running updmap-sys ... 2021-05-18T14:11:34.5747883Z done running updmap-sys. 2021-05-18T14:11:34.5749150Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist 2021-05-18T14:11:34.5751124Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/ih2l2mWQKs/TB63s4GSMQ ... 2021-05-18T14:11:35.0162549Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/ih2l2mWQKs/TB63s4GSMQ. 2021-05-18T14:11:35.0164028Z OK: optex.fmt/luatex 2021-05-18T14:11:35.0165240Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-18T14:11:35.0166811Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-18T14:11:36.4678343Z /home/runner/.TinyTeX/bin/x86_64-linux/tlmgr: (make_container __BACKUP_texlive-scripts.r59219.tar) install-tl does not exist 2021-05-18T14:11:36.4680498Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-18T14:11:36.6099285Z [1/1, ??:??/??:??] update: texlive-scripts [106k] (59219 -> 59236) ... done 2021-05-18T14:11:36.6100070Z running mktexlsr ... 2021-05-18T14:11:36.7007604Z done running mktexlsr. 2021-05-18T14:11:36.7374459Z running updmap-sys ... 2021-05-18T14:11:37.0503690Z done running updmap-sys. 2021-05-18T14:11:37.0505538Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-18T14:11:37.0507352Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-18T14:11:37.1350700Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-18T14:11:37.1351276Z with: 2021-05-18T14:11:37.1351718Z pandoc-version: 2.7.3 2021-05-18T14:11:37.1352152Z env: 2021-05-18T14:11:37.1352614Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:11:37.1353129Z TIC_DEPLOY_KEY: 2021-05-18T14:11:37.1353982Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:11:37.1355855Z GITHUB_PAT: *** 2021-05-18T14:11:37.1356738Z COVERALLS_TOKEN: *** 2021-05-18T14:11:37.1357253Z continue-on-error: true 2021-05-18T14:11:37.1358633Z VDIFFR_RUN_TESTS: 2021-05-18T14:11:37.1359834Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:11:37.1360352Z TZ: UTC 2021-05-18T14:11:37.1362478Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:11:37.1362927Z NOT_CRAN: true 2021-05-18T14:11:37.1363781Z ##[endgroup] 2021-05-18T14:11:37.9394978Z [command]sudo apt-get install -y gdebi-core 2021-05-18T14:11:38.0259510Z Reading package lists... 2021-05-18T14:11:38.2135226Z Building dependency tree... 2021-05-18T14:11:38.2153616Z Reading state information... 2021-05-18T14:11:38.4844493Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-18T14:11:38.4845868Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:11:38.4887209Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-18T14:11:38.6512756Z 2021-05-18T14:11:38.6695514Z Reading package lists... 0% 2021-05-18T14:11:38.6696003Z 2021-05-18T14:11:38.6745042Z Reading package lists... 100% 2021-05-18T14:11:38.6745505Z 2021-05-18T14:11:38.6745759Z 2021-05-18T14:11:38.6746303Z Reading package lists... Done 2021-05-18T14:11:38.6746652Z 2021-05-18T14:11:38.6747812Z Building dependency tree... 0% 2021-05-18T14:11:38.6748298Z 2021-05-18T14:11:38.7088598Z Building dependency tree... 0% 2021-05-18T14:11:38.7089098Z 2021-05-18T14:11:38.7089642Z Building dependency tree... 50% 2021-05-18T14:11:38.7090021Z 2021-05-18T14:11:38.8670800Z Building dependency tree... 50% 2021-05-18T14:11:38.8671296Z 2021-05-18T14:11:38.8671836Z Building dependency tree 2021-05-18T14:11:38.8672213Z 2021-05-18T14:11:38.8672821Z Reading state information... 0% 2021-05-18T14:11:38.8673257Z 2021-05-18T14:11:39.0531169Z Reading state information... 0% 2021-05-18T14:11:39.0532167Z 2021-05-18T14:11:39.0532700Z 2021-05-18T14:11:39.0533420Z Reading state information... 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2021-05-18T14:11:39.2838699Z 2021-05-18T14:11:39.2840630Z Reading state information... 87% 2021-05-18T14:11:39.2882249Z 2021-05-18T14:11:39.2882794Z Reading state information... 89% 2021-05-18T14:11:39.2927668Z 2021-05-18T14:11:39.2928237Z Reading state information... 91% 2021-05-18T14:11:39.2973917Z 2021-05-18T14:11:39.2974492Z Reading state information... 93% 2021-05-18T14:11:39.3019211Z 2021-05-18T14:11:39.3019798Z Reading state information... 95% 2021-05-18T14:11:39.3066151Z 2021-05-18T14:11:39.3066750Z Reading state information... 97% 2021-05-18T14:11:39.3109726Z 2021-05-18T14:11:39.3110323Z Reading state information... 99% 2021-05-18T14:11:39.6502812Z Selecting previously unselected package pandoc. 2021-05-18T14:11:39.7988494Z (Reading database ... 261973 files and directories currently installed.) 2021-05-18T14:11:39.8141716Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-18T14:11:39.8153703Z Unpacking pandoc (2.7.3-1) ... 2021-05-18T14:11:42.1038431Z Setting up pandoc (2.7.3-1) ... 2021-05-18T14:11:42.1076080Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:11:42.9918327Z 2021-05-18T14:11:42.9919402Z 2021-05-18T14:11:42.9920293Z Reading state information... Done 2021-05-18T14:11:43.0347132Z ##[group]Run git config user.name adigherman 2021-05-18T14:11:43.0347949Z git config user.name adigherman 2021-05-18T14:11:43.0348591Z git config user.email adig@jhu.edu 2021-05-18T14:11:43.0396901Z shell: /usr/bin/bash -e {0} 2021-05-18T14:11:43.0397354Z env: 2021-05-18T14:11:43.0397848Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:11:43.0398489Z TIC_DEPLOY_KEY: 2021-05-18T14:11:43.0399384Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:11:43.0401048Z GITHUB_PAT: *** 2021-05-18T14:11:43.0402057Z COVERALLS_TOKEN: *** 2021-05-18T14:11:43.0402619Z continue-on-error: true 2021-05-18T14:11:43.0403142Z VDIFFR_RUN_TESTS: 2021-05-18T14:11:43.0403694Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:11:43.0404186Z TZ: UTC 2021-05-18T14:11:43.0404632Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:11:43.0405108Z NOT_CRAN: true 2021-05-18T14:11:43.0405583Z ##[endgroup] 2021-05-18T14:11:43.0724139Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-18T14:11:43.0724855Z env: 2021-05-18T14:11:43.0725357Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:11:43.0725876Z TIC_DEPLOY_KEY: 2021-05-18T14:11:43.0726756Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:11:43.0728888Z GITHUB_PAT: *** 2021-05-18T14:11:43.0729802Z COVERALLS_TOKEN: *** 2021-05-18T14:11:43.0730387Z continue-on-error: true 2021-05-18T14:11:43.0730892Z VDIFFR_RUN_TESTS: 2021-05-18T14:11:43.0731430Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:11:43.0731920Z TZ: UTC 2021-05-18T14:11:43.0732327Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:11:43.0732783Z NOT_CRAN: true 2021-05-18T14:11:43.0733180Z ##[endgroup] 2021-05-18T14:11:43.2990451Z Reading package lists... 2021-05-18T14:11:43.4931429Z Building dependency tree... 2021-05-18T14:11:43.4953361Z Reading state information... 2021-05-18T14:11:43.6474506Z The following additional packages will be installed: 2021-05-18T14:11:43.6476473Z cmake-data libjsoncpp1 librhash0 2021-05-18T14:11:43.6483346Z Suggested packages: 2021-05-18T14:11:43.6484249Z cmake-doc ninja-build 2021-05-18T14:11:43.6990287Z The following NEW packages will be installed: 2021-05-18T14:11:43.7007525Z cmake cmake-data libjsoncpp1 librhash0 2021-05-18T14:11:43.7292387Z 0 upgraded, 4 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:11:43.7293500Z Need to get 5470 kB of archives. 2021-05-18T14:11:43.7294483Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-18T14:11:43.7296991Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-18T14:11:43.7846340Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-18T14:11:43.7882282Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-18T14:11:43.7927597Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-18T14:11:44.4004643Z Fetched 5470 kB in 0s (26.9 MB/s) 2021-05-18T14:11:44.4494163Z Selecting previously unselected package cmake-data. 2021-05-18T14:11:44.4575326Z (Reading database ... 2021-05-18T14:11:44.4576261Z (Reading database ... 5% 2021-05-18T14:11:44.4577102Z (Reading database ... 10% 2021-05-18T14:11:44.4577914Z (Reading database ... 15% 2021-05-18T14:11:44.4578694Z (Reading database ... 20% 2021-05-18T14:11:44.4579489Z (Reading database ... 25% 2021-05-18T14:11:44.4580268Z (Reading database ... 30% 2021-05-18T14:11:44.4581069Z (Reading database ... 35% 2021-05-18T14:11:44.4581863Z (Reading database ... 40% 2021-05-18T14:11:44.4582636Z (Reading database ... 45% 2021-05-18T14:11:44.4583451Z (Reading database ... 50% 2021-05-18T14:11:44.4604301Z (Reading database ... 55% 2021-05-18T14:11:44.4649027Z (Reading database ... 60% 2021-05-18T14:11:44.4692423Z (Reading database ... 65% 2021-05-18T14:11:44.4835121Z (Reading database ... 70% 2021-05-18T14:11:44.4967186Z (Reading database ... 75% 2021-05-18T14:11:44.5293783Z (Reading database ... 80% 2021-05-18T14:11:44.5627877Z (Reading database ... 85% 2021-05-18T14:11:44.5786552Z (Reading database ... 90% 2021-05-18T14:11:44.5874108Z (Reading database ... 95% 2021-05-18T14:11:44.5874693Z (Reading database ... 100% 2021-05-18T14:11:44.5875493Z (Reading database ... 261980 files and directories currently installed.) 2021-05-18T14:11:44.6029584Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-18T14:11:44.6210746Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-18T14:11:45.1433879Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-18T14:11:45.1766500Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-18T14:11:45.1796508Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-18T14:11:45.2167009Z Selecting previously unselected package librhash0:amd64. 2021-05-18T14:11:45.2489369Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-18T14:11:45.2512175Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-18T14:11:45.2910965Z Selecting previously unselected package cmake. 2021-05-18T14:11:45.3214029Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-18T14:11:45.3225333Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-18T14:11:45.7966981Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-18T14:11:45.8000752Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-18T14:11:45.8582967Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-18T14:11:45.8584341Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-18T14:11:45.8641296Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:11:47.1817686Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:11:49.8375646Z Reading package lists... 2021-05-18T14:11:50.0221960Z Building dependency tree... 2021-05-18T14:11:50.0242766Z Reading state information... 2021-05-18T14:11:50.1940608Z Suggested packages: 2021-05-18T14:11:50.1943300Z libssh-doc 2021-05-18T14:11:50.2433146Z The following NEW packages will be installed: 2021-05-18T14:11:50.2436177Z libssh-dev 2021-05-18T14:11:50.2663114Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:11:50.2664686Z Need to get 219 kB of archives. 2021-05-18T14:11:50.2665548Z After this operation, 1127 kB of additional disk space will be used. 2021-05-18T14:11:50.2667666Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-18T14:11:50.7852913Z Fetched 219 kB in 0s (8940 kB/s) 2021-05-18T14:11:50.8214499Z Selecting previously unselected package libssh-dev:amd64. 2021-05-18T14:11:50.8295664Z (Reading database ... 2021-05-18T14:11:50.8296547Z (Reading database ... 5% 2021-05-18T14:11:50.8297254Z (Reading database ... 10% 2021-05-18T14:11:50.8298007Z (Reading database ... 15% 2021-05-18T14:11:50.8298658Z (Reading database ... 20% 2021-05-18T14:11:50.8299324Z (Reading database ... 25% 2021-05-18T14:11:50.8300032Z (Reading database ... 30% 2021-05-18T14:11:50.8300683Z (Reading database ... 35% 2021-05-18T14:11:50.8301346Z (Reading database ... 40% 2021-05-18T14:11:50.8302009Z (Reading database ... 45% 2021-05-18T14:11:50.8302650Z (Reading database ... 50% 2021-05-18T14:11:50.8344938Z (Reading database ... 55% 2021-05-18T14:11:50.8388052Z (Reading database ... 60% 2021-05-18T14:11:50.8430405Z (Reading database ... 65% 2021-05-18T14:11:50.8562467Z (Reading database ... 70% 2021-05-18T14:11:50.8691315Z (Reading database ... 75% 2021-05-18T14:11:50.9006784Z (Reading database ... 80% 2021-05-18T14:11:50.9402046Z (Reading database ... 85% 2021-05-18T14:11:50.9561293Z (Reading database ... 90% 2021-05-18T14:11:50.9701027Z (Reading database ... 95% 2021-05-18T14:11:50.9701625Z (Reading database ... 100% 2021-05-18T14:11:50.9702449Z (Reading database ... 264764 files and directories currently installed.) 2021-05-18T14:11:50.9866639Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-18T14:11:50.9882853Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-18T14:11:51.0780981Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-18T14:11:53.7217470Z Reading package lists... 2021-05-18T14:11:53.9109189Z Building dependency tree... 2021-05-18T14:11:53.9130552Z Reading state information... 2021-05-18T14:11:54.1383508Z The following NEW packages will be installed: 2021-05-18T14:11:54.1395864Z jags 2021-05-18T14:11:54.1652240Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:11:54.1653782Z Need to get 1562 kB of archives. 2021-05-18T14:11:54.1654621Z After this operation, 3615 kB of additional disk space will be used. 2021-05-18T14:11:54.1656709Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-18T14:11:54.6683649Z Fetched 1562 kB in 0s (34.7 MB/s) 2021-05-18T14:11:55.2727311Z Selecting previously unselected package jags. 2021-05-18T14:11:55.2811208Z (Reading database ... 2021-05-18T14:11:55.2812547Z (Reading database ... 5% 2021-05-18T14:11:55.2813569Z (Reading database ... 10% 2021-05-18T14:11:55.2814375Z (Reading database ... 15% 2021-05-18T14:11:55.2815186Z (Reading database ... 20% 2021-05-18T14:11:55.2815987Z (Reading database ... 25% 2021-05-18T14:11:55.2816786Z (Reading database ... 30% 2021-05-18T14:11:55.2817589Z (Reading database ... 35% 2021-05-18T14:11:55.2818387Z (Reading database ... 40% 2021-05-18T14:11:55.2819170Z (Reading database ... 45% 2021-05-18T14:11:55.2819970Z (Reading database ... 50% 2021-05-18T14:11:55.2858094Z (Reading database ... 55% 2021-05-18T14:11:55.2901357Z (Reading database ... 60% 2021-05-18T14:11:55.2943264Z (Reading database ... 65% 2021-05-18T14:11:55.3091000Z (Reading database ... 70% 2021-05-18T14:11:55.3229090Z (Reading database ... 75% 2021-05-18T14:11:55.3572958Z (Reading database ... 80% 2021-05-18T14:11:55.3946000Z (Reading database ... 85% 2021-05-18T14:11:55.4115164Z (Reading database ... 90% 2021-05-18T14:11:55.4210938Z (Reading database ... 95% 2021-05-18T14:11:55.4211542Z (Reading database ... 100% 2021-05-18T14:11:55.4212393Z (Reading database ... 264783 files and directories currently installed.) 2021-05-18T14:11:55.4372924Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-18T14:11:55.4406833Z Unpacking jags (4.3.0-3build1) ... 2021-05-18T14:11:55.6312235Z Setting up jags (4.3.0-3build1) ... 2021-05-18T14:11:55.6579647Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:11:56.5257020Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:11:59.1619227Z Reading package lists... 2021-05-18T14:11:59.3494616Z Building dependency tree... 2021-05-18T14:11:59.3520329Z Reading state information... 2021-05-18T14:11:59.5271171Z The following additional packages will be installed: 2021-05-18T14:11:59.5272551Z libnode64 libuv1-dev 2021-05-18T14:11:59.5859183Z The following NEW packages will be installed: 2021-05-18T14:11:59.5861494Z libnode-dev libnode64 libuv1-dev 2021-05-18T14:11:59.6200465Z 0 upgraded, 3 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:11:59.6201430Z Need to get 6239 kB of archives. 2021-05-18T14:11:59.6202618Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-18T14:11:59.6205632Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-18T14:11:59.6247091Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-18T14:11:59.7073484Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-18T14:12:00.1961364Z Fetched 6239 kB in 0s (52.1 MB/s) 2021-05-18T14:12:00.2308781Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-18T14:12:00.2392704Z (Reading database ... 2021-05-18T14:12:00.2393580Z (Reading database ... 5% 2021-05-18T14:12:00.2394183Z (Reading database ... 10% 2021-05-18T14:12:00.2395036Z (Reading database ... 15% 2021-05-18T14:12:00.2395663Z (Reading database ... 20% 2021-05-18T14:12:00.2396546Z (Reading database ... 25% 2021-05-18T14:12:00.2397095Z (Reading database ... 30% 2021-05-18T14:12:00.2397620Z (Reading database ... 35% 2021-05-18T14:12:00.2398162Z (Reading database ... 40% 2021-05-18T14:12:00.2398687Z (Reading database ... 45% 2021-05-18T14:12:00.2399225Z (Reading database ... 50% 2021-05-18T14:12:00.2440258Z (Reading database ... 55% 2021-05-18T14:12:00.2485553Z (Reading database ... 60% 2021-05-18T14:12:00.2540217Z (Reading database ... 65% 2021-05-18T14:12:00.2698808Z (Reading database ... 70% 2021-05-18T14:12:00.2850247Z (Reading database ... 75% 2021-05-18T14:12:00.3167144Z (Reading database ... 80% 2021-05-18T14:12:00.3546649Z (Reading database ... 85% 2021-05-18T14:12:00.3749272Z (Reading database ... 90% 2021-05-18T14:12:00.3901618Z (Reading database ... 95% 2021-05-18T14:12:00.3902315Z (Reading database ... 100% 2021-05-18T14:12:00.3903145Z (Reading database ... 264923 files and directories currently installed.) 2021-05-18T14:12:00.4027329Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-18T14:12:00.5132460Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-18T14:12:00.5612555Z Selecting previously unselected package libnode64:amd64. 2021-05-18T14:12:00.5916193Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-18T14:12:00.5939524Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:12:01.3053970Z Selecting previously unselected package libnode-dev:amd64. 2021-05-18T14:12:01.3367403Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-18T14:12:01.3381592Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:12:01.4482145Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-18T14:12:01.4520238Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:12:01.4556443Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-18T14:12:01.4595942Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:04.1181595Z Reading package lists... 2021-05-18T14:12:04.3246578Z Building dependency tree... 2021-05-18T14:12:04.3268605Z Reading state information... 2021-05-18T14:12:04.5090634Z The following additional packages will be installed: 2021-05-18T14:12:04.5093938Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-18T14:12:04.5099106Z Suggested packages: 2021-05-18T14:12:04.5099899Z libfftw3-doc 2021-05-18T14:12:04.5615590Z The following NEW packages will be installed: 2021-05-18T14:12:04.5623278Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-18T14:12:04.5849251Z 0 upgraded, 5 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:04.5850220Z Need to get 3986 kB of archives. 2021-05-18T14:12:04.5851417Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-18T14:12:04.5853575Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-18T14:12:04.5917190Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-18T14:12:04.6004962Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-18T14:12:04.6118446Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-18T14:12:04.6127711Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-18T14:12:05.1412510Z Fetched 3986 kB in 0s (51.7 MB/s) 2021-05-18T14:12:05.1780935Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-18T14:12:05.1862368Z (Reading database ... 2021-05-18T14:12:05.1863339Z (Reading database ... 5% 2021-05-18T14:12:05.1864169Z (Reading database ... 10% 2021-05-18T14:12:05.1864969Z (Reading database ... 15% 2021-05-18T14:12:05.1865924Z (Reading database ... 20% 2021-05-18T14:12:05.1866512Z (Reading database ... 25% 2021-05-18T14:12:05.1867363Z (Reading database ... 30% 2021-05-18T14:12:05.1867938Z (Reading database ... 35% 2021-05-18T14:12:05.1868480Z (Reading database ... 40% 2021-05-18T14:12:05.1869004Z (Reading database ... 45% 2021-05-18T14:12:05.1869540Z (Reading database ... 50% 2021-05-18T14:12:05.1916658Z (Reading database ... 55% 2021-05-18T14:12:05.1957514Z (Reading database ... 60% 2021-05-18T14:12:05.2006370Z (Reading database ... 65% 2021-05-18T14:12:05.2147809Z (Reading database ... 70% 2021-05-18T14:12:05.2282798Z (Reading database ... 75% 2021-05-18T14:12:05.2601387Z (Reading database ... 80% 2021-05-18T14:12:05.2967785Z (Reading database ... 85% 2021-05-18T14:12:05.3135784Z (Reading database ... 90% 2021-05-18T14:12:05.3224978Z (Reading database ... 95% 2021-05-18T14:12:05.3225932Z (Reading database ... 100% 2021-05-18T14:12:05.3227104Z (Reading database ... 265059 files and directories currently installed.) 2021-05-18T14:12:05.3388426Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:12:05.3411176Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:05.4065707Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-18T14:12:05.4357316Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:12:05.4374747Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:05.5531839Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-18T14:12:05.5838052Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:12:05.5853573Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:05.6930643Z Selecting previously unselected package libfftw3-bin. 2021-05-18T14:12:05.7228017Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:12:05.7243056Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-18T14:12:05.7651794Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-18T14:12:05.7909137Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-18T14:12:05.7922642Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:06.1271336Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:06.1333215Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:06.1369030Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:06.1410963Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-18T14:12:06.1450299Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-18T14:12:06.1502756Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:12:07.0895235Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:09.7067514Z Reading package lists... 2021-05-18T14:12:09.9138876Z Building dependency tree... 2021-05-18T14:12:09.9162481Z Reading state information... 2021-05-18T14:12:10.0947190Z The following additional packages will be installed: 2021-05-18T14:12:10.0949595Z libdcmtk14 2021-05-18T14:12:10.1451106Z The following NEW packages will be installed: 2021-05-18T14:12:10.1457084Z dcmtk libdcmtk14 2021-05-18T14:12:10.1815674Z 0 upgraded, 2 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:10.1817011Z Need to get 5546 kB of archives. 2021-05-18T14:12:10.1818251Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-18T14:12:10.1821509Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-18T14:12:10.2586690Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-18T14:12:10.7601227Z Fetched 5546 kB in 0s (44.1 MB/s) 2021-05-18T14:12:10.7968787Z Selecting previously unselected package libdcmtk14. 2021-05-18T14:12:10.8049522Z (Reading database ... 2021-05-18T14:12:10.8050684Z (Reading database ... 5% 2021-05-18T14:12:10.8051656Z (Reading database ... 10% 2021-05-18T14:12:10.8052475Z (Reading database ... 15% 2021-05-18T14:12:10.8053262Z (Reading database ... 20% 2021-05-18T14:12:10.8054314Z (Reading database ... 25% 2021-05-18T14:12:10.8055450Z (Reading database ... 30% 2021-05-18T14:12:10.8056233Z (Reading database ... 35% 2021-05-18T14:12:10.8057341Z (Reading database ... 40% 2021-05-18T14:12:10.8058398Z (Reading database ... 45% 2021-05-18T14:12:10.8059081Z (Reading database ... 50% 2021-05-18T14:12:10.8086797Z (Reading database ... 55% 2021-05-18T14:12:10.8135142Z (Reading database ... 60% 2021-05-18T14:12:10.8177896Z (Reading database ... 65% 2021-05-18T14:12:10.8318185Z (Reading database ... 70% 2021-05-18T14:12:10.8454804Z (Reading database ... 75% 2021-05-18T14:12:10.8790486Z (Reading database ... 80% 2021-05-18T14:12:10.9148552Z (Reading database ... 85% 2021-05-18T14:12:10.9314942Z (Reading database ... 90% 2021-05-18T14:12:10.9410658Z (Reading database ... 95% 2021-05-18T14:12:10.9411241Z (Reading database ... 100% 2021-05-18T14:12:10.9412083Z (Reading database ... 265150 files and directories currently installed.) 2021-05-18T14:12:10.9573382Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-18T14:12:10.9606634Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-18T14:12:11.5330589Z Selecting previously unselected package dcmtk. 2021-05-18T14:12:11.5593751Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-18T14:12:11.5707644Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-18T14:12:11.7361141Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-18T14:12:11.7400665Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-18T14:12:11.7574130Z Adding `dcmtk' group to system ... 2021-05-18T14:12:11.8191613Z Adding `dcmtk' user to system ... 2021-05-18T14:12:11.9086997Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-18T14:12:12.2264192Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:12:14.1713822Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:16.8667825Z Reading package lists... 2021-05-18T14:12:17.0497628Z Building dependency tree... 2021-05-18T14:12:17.0518942Z Reading state information... 2021-05-18T14:12:17.3291342Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-18T14:12:17.3292992Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:17.4068949Z Reading package lists... 2021-05-18T14:12:17.6132816Z Building dependency tree... 2021-05-18T14:12:17.6154069Z Reading state information... 2021-05-18T14:12:17.8895050Z libpng-dev is already the newest version (1.6.37-2). 2021-05-18T14:12:17.8896575Z libpng-dev set to manually installed. 2021-05-18T14:12:17.8897763Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:17.9661737Z Reading package lists... 2021-05-18T14:12:18.1588641Z Building dependency tree... 2021-05-18T14:12:18.1609780Z Reading state information... 2021-05-18T14:12:18.3311628Z The following additional packages will be installed: 2021-05-18T14:12:18.3313775Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-18T14:12:18.3320246Z Suggested packages: 2021-05-18T14:12:18.3321616Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-18T14:12:18.3323142Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-18T14:12:18.3324277Z fonts-arphic-uming fonts-nanum 2021-05-18T14:12:18.3924017Z The following NEW packages will be installed: 2021-05-18T14:12:18.3925809Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-18T14:12:18.3931387Z libpoppler97 poppler-data 2021-05-18T14:12:18.4194257Z 0 upgraded, 6 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:18.4195109Z Need to get 2582 kB of archives. 2021-05-18T14:12:18.4195913Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-18T14:12:18.4198992Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-18T14:12:18.4622248Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-18T14:12:18.4680250Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-18T14:12:18.4904690Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-18T14:12:18.4916301Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-18T14:12:18.4928172Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-18T14:12:18.9637445Z Fetched 2582 kB in 0s (27.3 MB/s) 2021-05-18T14:12:19.0112779Z Selecting previously unselected package poppler-data. 2021-05-18T14:12:19.0326239Z (Reading database ... 2021-05-18T14:12:19.0326893Z (Reading database ... 5% 2021-05-18T14:12:19.0327428Z (Reading database ... 10% 2021-05-18T14:12:19.0327975Z (Reading database ... 15% 2021-05-18T14:12:19.0328777Z (Reading database ... 20% 2021-05-18T14:12:19.0329578Z (Reading database ... 25% 2021-05-18T14:12:19.0330157Z (Reading database ... 30% 2021-05-18T14:12:19.0330680Z (Reading database ... 35% 2021-05-18T14:12:19.0331212Z (Reading database ... 40% 2021-05-18T14:12:19.0331750Z (Reading database ... 45% 2021-05-18T14:12:19.0332315Z (Reading database ... 50% 2021-05-18T14:12:19.0361416Z (Reading database ... 55% 2021-05-18T14:12:19.0406619Z (Reading database ... 60% 2021-05-18T14:12:19.0450621Z (Reading database ... 65% 2021-05-18T14:12:19.0591602Z (Reading database ... 70% 2021-05-18T14:12:19.0729638Z (Reading database ... 75% 2021-05-18T14:12:19.1047081Z (Reading database ... 80% 2021-05-18T14:12:19.1411982Z (Reading database ... 85% 2021-05-18T14:12:19.1594657Z (Reading database ... 90% 2021-05-18T14:12:19.1689380Z (Reading database ... 95% 2021-05-18T14:12:19.1689977Z (Reading database ... 100% 2021-05-18T14:12:19.1690802Z (Reading database ... 265385 files and directories currently installed.) 2021-05-18T14:12:19.1853716Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-18T14:12:19.1869293Z Unpacking poppler-data (0.4.9-2) ... 2021-05-18T14:12:19.4891470Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-18T14:12:19.5153275Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-18T14:12:19.5183609Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-18T14:12:19.5810193Z Selecting previously unselected package libpoppler97:amd64. 2021-05-18T14:12:19.6074628Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:12:19.6113065Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:19.7411923Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-18T14:12:19.7800981Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:12:19.7886326Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:19.8292493Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-18T14:12:19.8591911Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:12:19.8716416Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:19.9080061Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-18T14:12:19.9420743Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-18T14:12:19.9433159Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:20.0337802Z Setting up poppler-data (0.4.9-2) ... 2021-05-18T14:12:20.0480459Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-18T14:12:20.0515628Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:20.0564268Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:20.0600128Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:20.0633611Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-18T14:12:20.0675883Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-18T14:12:20.2201150Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:22.8935025Z Reading package lists... 2021-05-18T14:12:23.0956722Z Building dependency tree... 2021-05-18T14:12:23.0981168Z Reading state information... 2021-05-18T14:12:23.2731794Z The following additional packages will be installed: 2021-05-18T14:12:23.2737818Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-18T14:12:23.2743688Z Suggested packages: 2021-05-18T14:12:23.2744544Z libhdf5-doc 2021-05-18T14:12:23.3239920Z The following NEW packages will be installed: 2021-05-18T14:12:23.3242309Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-18T14:12:23.3243437Z libsz2 2021-05-18T14:12:23.3479151Z 0 upgraded, 7 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:23.3480212Z Need to get 4074 kB of archives. 2021-05-18T14:12:23.3481155Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-18T14:12:23.3483684Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-18T14:12:23.3500313Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-18T14:12:23.3522573Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-18T14:12:23.3528806Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-18T14:12:23.3742026Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-18T14:12:23.3774476Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-18T14:12:23.3782954Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-18T14:12:23.8949005Z Fetched 4074 kB in 0s (47.6 MB/s) 2021-05-18T14:12:23.9330738Z Selecting previously unselected package hdf5-helpers. 2021-05-18T14:12:23.9411354Z (Reading database ... 2021-05-18T14:12:23.9412069Z (Reading database ... 5% 2021-05-18T14:12:23.9412783Z (Reading database ... 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2021-05-18T14:12:24.0808939Z (Reading database ... 265945 files and directories currently installed.) 2021-05-18T14:12:24.0971427Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:12:24.0982649Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:24.1371265Z Selecting previously unselected package libaec0:amd64. 2021-05-18T14:12:24.1649163Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-18T14:12:24.1678749Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-18T14:12:24.2086823Z Selecting previously unselected package libsz2:amd64. 2021-05-18T14:12:24.2331940Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-18T14:12:24.2346069Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-18T14:12:24.2814721Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-18T14:12:24.3111621Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:12:24.3132975Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:24.4932173Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-18T14:12:24.5242504Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:12:24.5258200Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:24.5771597Z Selecting previously unselected package libaec-dev:amd64. 2021-05-18T14:12:24.5998635Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-18T14:12:24.6054021Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-18T14:12:24.6371329Z Selecting previously unselected package libhdf5-dev. 2021-05-18T14:12:24.6661602Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-18T14:12:24.6733525Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:25.0290322Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:25.0346173Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-18T14:12:25.0401701Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-18T14:12:25.0437963Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-18T14:12:25.0482922Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:25.0525508Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:25.0581129Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-18T14:12:25.0682523Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-18T14:12:25.0719049Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:12:25.9954566Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:28.6494783Z Reading package lists... 2021-05-18T14:12:28.8408032Z Building dependency tree... 2021-05-18T14:12:28.8431183Z Reading state information... 2021-05-18T14:12:29.0095260Z The following additional packages will be installed: 2021-05-18T14:12:29.0099865Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-18T14:12:29.0656388Z The following NEW packages will be installed: 2021-05-18T14:12:29.0664689Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-18T14:12:29.0670517Z mesa-common-dev 2021-05-18T14:12:29.0955473Z 0 upgraded, 6 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:29.0959660Z Need to get 1761 kB of archives. 2021-05-18T14:12:29.0961020Z After this operation, 5442 kB of additional disk space will be used. 2021-05-18T14:12:29.0963496Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-18T14:12:29.0995204Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-18T14:12:29.1001309Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-18T14:12:29.1028364Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-18T14:12:29.1061428Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-18T14:12:29.1121310Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-18T14:12:29.6555051Z Fetched 1761 kB in 0s (27.5 MB/s) 2021-05-18T14:12:29.6951194Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-18T14:12:29.7039759Z (Reading database ... 2021-05-18T14:12:29.7040877Z (Reading database ... 5% 2021-05-18T14:12:29.7041684Z (Reading database ... 10% 2021-05-18T14:12:29.7042543Z (Reading database ... 15% 2021-05-18T14:12:29.7043352Z (Reading database ... 20% 2021-05-18T14:12:29.7044124Z (Reading database ... 25% 2021-05-18T14:12:29.7044938Z (Reading database ... 30% 2021-05-18T14:12:29.7046092Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-18T14:12:29.9104703Z Selecting previously unselected package libglx-dev:amd64. 2021-05-18T14:12:29.9415341Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:12:29.9429498Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:12:29.9885871Z Selecting previously unselected package libgl-dev:amd64. 2021-05-18T14:12:30.0218638Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:12:30.0237514Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:12:30.0694804Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-18T14:12:30.1080299Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-18T14:12:30.1117168Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-18T14:12:30.1637610Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-18T14:12:30.2057683Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-18T14:12:30.2076510Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-18T14:12:30.2690991Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-18T14:12:30.3010507Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:12:30.3023504Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:12:30.4835778Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-18T14:12:30.4881763Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:12:30.4919728Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-18T14:12:30.4958656Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:12:30.4995638Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-18T14:12:30.5027973Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:12:30.5065256Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:12:32.2055036Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:34.8929298Z Reading package lists... 2021-05-18T14:12:35.0766258Z Building dependency tree... 2021-05-18T14:12:35.0787541Z Reading state information... 2021-05-18T14:12:35.2518004Z The following additional packages will be installed: 2021-05-18T14:12:35.2520170Z libprotobuf-lite17 libprotoc17 2021-05-18T14:12:35.3147020Z The following NEW packages will be installed: 2021-05-18T14:12:35.3149350Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-18T14:12:35.3150843Z protobuf-compiler 2021-05-18T14:12:35.3503821Z 0 upgraded, 5 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:35.3505680Z Need to get 2754 kB of archives. 2021-05-18T14:12:35.3506910Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-18T14:12:35.3509268Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-18T14:12:35.3546401Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-18T14:12:35.3697865Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-18T14:12:35.3867284Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-18T14:12:35.4008588Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-18T14:12:35.8971126Z Fetched 2754 kB in 0s (34.0 MB/s) 2021-05-18T14:12:35.9349520Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-18T14:12:35.9432584Z (Reading database ... 2021-05-18T14:12:35.9433435Z (Reading database ... 5% 2021-05-18T14:12:35.9434138Z (Reading database ... 10% 2021-05-18T14:12:35.9434913Z (Reading database ... 15% 2021-05-18T14:12:35.9435592Z (Reading 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2021-05-18T14:12:36.0930346Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:12:36.0950701Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.1351086Z Selecting previously unselected package libprotoc17:amd64. 2021-05-18T14:12:36.6458433Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:12:36.6467450Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.6470220Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-18T14:12:36.6472161Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:12:36.6473671Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.6475038Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-18T14:12:36.6476536Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:12:36.6477836Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.6572250Z Selecting previously unselected package protobuf-compiler. 2021-05-18T14:12:36.6903256Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-18T14:12:36.6916854Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.7642308Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.7683895Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.7724746Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.7760939Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.7794088Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-18T14:12:36.7832497Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:12:37.6656274Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:40.3015042Z Reading package lists... 2021-05-18T14:12:40.4925272Z Building dependency tree... 2021-05-18T14:12:40.4949997Z Reading state information... 2021-05-18T14:12:40.6741587Z The following additional packages will be installed: 2021-05-18T14:12:40.6743863Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-18T14:12:40.6747077Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-18T14:12:40.6748731Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-18T14:12:40.6750430Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-18T14:12:40.6752270Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-18T14:12:40.6755884Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-18T14:12:40.6759360Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-18T14:12:40.6762331Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-18T14:12:40.6767638Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-18T14:12:40.6769165Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-18T14:12:40.6770710Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-18T14:12:40.6771969Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-18T14:12:40.6774410Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-18T14:12:40.6776273Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-18T14:12:40.6776964Z Suggested packages: 2021-05-18T14:12:40.6777991Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-18T14:12:40.6779210Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-18T14:12:40.6782041Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-18T14:12:40.6783567Z nvidia-legacy-304xx-vdpau-driver 2021-05-18T14:12:40.7649991Z The following NEW packages will be installed: 2021-05-18T14:12:40.7652215Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-18T14:12:40.7654404Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-18T14:12:40.7656534Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-18T14:12:40.7658435Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-18T14:12:40.7660640Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-18T14:12:40.7662572Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-18T14:12:40.7665034Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-18T14:12:40.7666763Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-18T14:12:40.7668753Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-18T14:12:40.7670949Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-18T14:12:40.7672615Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-18T14:12:40.7688850Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-18T14:12:40.7690234Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-18T14:12:40.7691483Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-18T14:12:40.8036325Z 0 upgraded, 76 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:40.8037195Z Need to get 47.1 MB of archives. 2021-05-18T14:12:40.8037998Z After this operation, 195 MB of additional disk space will be used. 2021-05-18T14:12:40.8040286Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-18T14:12:40.8287934Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-18T14:12:40.8300844Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-18T14:12:40.8308803Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-18T14:12:40.8314943Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-18T14:12:40.8321330Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-18T14:12:40.8331283Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-18T14:12:40.8378662Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-18T14:12:40.9577895Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-18T14:12:40.9585104Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-18T14:12:40.9621742Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-18T14:12:40.9653428Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-18T14:12:40.9662803Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-18T14:12:40.9670378Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-18T14:12:40.9683909Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-18T14:12:40.9718960Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-18T14:12:40.9733189Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-18T14:12:40.9754239Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-18T14:12:40.9762302Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-18T14:12:40.9776151Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-18T14:12:40.9794442Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-18T14:12:40.9874771Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-18T14:12:41.0088269Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-18T14:12:41.0161888Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-18T14:12:41.0170098Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-18T14:12:41.0222854Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-18T14:12:41.1606433Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-18T14:12:41.1614121Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-18T14:12:41.1620243Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-18T14:12:41.1633553Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-18T14:12:41.1656347Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-18T14:12:41.1663958Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-18T14:12:41.1680501Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-18T14:12:41.1697758Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-18T14:12:41.1794657Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-18T14:12:41.1822529Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-18T14:12:41.1947649Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-18T14:12:41.1954074Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-18T14:12:41.4046925Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-18T14:12:41.4057327Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-18T14:12:41.4067913Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-18T14:12:41.4078576Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-18T14:12:41.4086319Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-18T14:12:41.4095171Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-18T14:12:41.4109346Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-18T14:12:41.4224409Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-18T14:12:41.4236789Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-18T14:12:41.4269240Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-18T14:12:41.4278444Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-18T14:12:41.4448207Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-18T14:12:41.4495934Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-18T14:12:41.4511912Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-18T14:12:41.4515195Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-18T14:12:41.4518921Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-18T14:12:41.4530281Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-18T14:12:41.4545882Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-18T14:12:41.4581667Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-18T14:12:41.4609225Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-18T14:12:41.4619333Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-18T14:12:41.4706652Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-18T14:12:41.4716136Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-18T14:12:41.4750610Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-18T14:12:41.4778693Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-18T14:12:41.4826370Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-18T14:12:41.4871541Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-18T14:12:41.4883602Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-18T14:12:41.4894943Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-18T14:12:41.5217453Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-18T14:12:41.5235294Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-18T14:12:41.5501383Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-18T14:12:41.5515676Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-18T14:12:41.5527423Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-18T14:12:41.6063227Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-18T14:12:41.6503366Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-18T14:12:41.6644916Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-18T14:12:41.6646982Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-18T14:12:43.1475154Z Fetched 47.1 MB in 1s (52.9 MB/s) 2021-05-18T14:12:43.1476271Z Selecting previously unselected package libaom0:amd64. 2021-05-18T14:12:43.1485005Z (Reading database ... 2021-05-18T14:12:43.1485797Z (Reading database ... 5% 2021-05-18T14:12:43.1486495Z (Reading database ... 10% 2021-05-18T14:12:43.1487189Z (Reading database ... 15% 2021-05-18T14:12:43.1487889Z (Reading database ... 20% 2021-05-18T14:12:43.1488879Z (Reading database ... 25% 2021-05-18T14:12:43.1489610Z (Reading database ... 30% 2021-05-18T14:12:43.1490289Z (Reading database ... 35% 2021-05-18T14:12:43.1490946Z (Reading database ... 40% 2021-05-18T14:12:43.1491631Z (Reading database ... 45% 2021-05-18T14:12:43.1492308Z (Reading database ... 50% 2021-05-18T14:12:43.1492962Z (Reading database ... 55% 2021-05-18T14:12:43.1493634Z (Reading database ... 60% 2021-05-18T14:12:43.1494312Z (Reading database ... 65% 2021-05-18T14:12:43.1494965Z (Reading database ... 70% 2021-05-18T14:12:43.1495647Z (Reading database ... 75% 2021-05-18T14:12:43.1496336Z (Reading database ... 80% 2021-05-18T14:12:43.1497008Z (Reading database ... 85% 2021-05-18T14:12:43.1497672Z (Reading database ... 90% 2021-05-18T14:12:43.1498334Z (Reading database ... 95% 2021-05-18T14:12:43.1499018Z (Reading database ... 100% 2021-05-18T14:12:43.1499990Z (Reading database ... 266807 files and directories currently installed.) 2021-05-18T14:12:43.1501826Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-18T14:12:43.1503224Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-18T14:12:43.1504397Z Selecting previously unselected package libva2:amd64. 2021-05-18T14:12:43.1505679Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-18T14:12:43.1506731Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-18T14:12:43.1507949Z Selecting previously unselected package libva-drm2:amd64. 2021-05-18T14:12:43.1509269Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-18T14:12:43.1510386Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-18T14:12:43.1511631Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-18T14:12:43.1512920Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-18T14:12:43.1514027Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-18T14:12:43.1515041Z Selecting previously unselected package libvdpau1:amd64. 2021-05-18T14:12:43.1516366Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-18T14:12:43.1518017Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-18T14:12:43.1519359Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-18T14:12:43.1520904Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-18T14:12:43.1522253Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-18T14:12:43.1523399Z Selecting previously unselected package libavutil56:amd64. 2021-05-18T14:12:43.1526431Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-18T14:12:43.1527496Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:43.1528856Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-18T14:12:43.1557295Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-18T14:12:43.1573060Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-18T14:12:43.9570739Z Selecting previously unselected package libgsm1:amd64. 2021-05-18T14:12:43.9916764Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-18T14:12:43.9937039Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-18T14:12:44.0401954Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-18T14:12:44.0712577Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-18T14:12:44.0727190Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-18T14:12:44.1210955Z Selecting previously unselected package libopus0:amd64. 2021-05-18T14:12:44.1449197Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-18T14:12:44.1466302Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-18T14:12:44.1907785Z Selecting previously unselected package libshine3:amd64. 2021-05-18T14:12:44.2259967Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-18T14:12:44.2302871Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-18T14:12:44.2811213Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-18T14:12:44.3073185Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-18T14:12:44.3113215Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-18T14:12:44.3439845Z Selecting previously unselected package libspeex1:amd64. 2021-05-18T14:12:44.3758476Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-18T14:12:44.3774473Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-18T14:12:44.4125195Z Selecting previously unselected package libsoxr0:amd64. 2021-05-18T14:12:44.4457506Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-18T14:12:44.4469908Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-18T14:12:44.4970820Z Selecting previously unselected package libswresample3:amd64. 2021-05-18T14:12:44.5224998Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-18T14:12:44.5238014Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:44.5639637Z Selecting previously unselected package libtheora0:amd64. 2021-05-18T14:12:44.5979391Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-18T14:12:44.5992418Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-18T14:12:44.6490284Z Selecting previously unselected package libtwolame0:amd64. 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Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-18T14:12:52.8472946Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-18T14:12:52.8517220Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-18T14:12:52.8571557Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-18T14:12:52.8609971Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-18T14:12:52.8644471Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-18T14:12:52.8738317Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-18T14:12:52.8790617Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:12:52.8827785Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-18T14:12:52.8872802Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-18T14:12:52.8910608Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-18T14:12:52.8979508Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-18T14:12:52.9015628Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-18T14:12:52.9050105Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-18T14:12:52.9087391Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-18T14:12:52.9132773Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-18T14:12:52.9172513Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-18T14:12:52.9216177Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-18T14:12:52.9254792Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-18T14:12:52.9292705Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:12:52.9331728Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-18T14:12:52.9368782Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-18T14:12:52.9408016Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-18T14:12:52.9452440Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-18T14:12:52.9490705Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:52.9526614Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-18T14:12:52.9569653Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:52.9614126Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-18T14:12:52.9653352Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-18T14:12:52.9729413Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-18T14:12:52.9798438Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-18T14:12:52.9844284Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-18T14:12:52.9885316Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:52.9932602Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-18T14:12:53.0000309Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-18T14:12:53.0041110Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-18T14:12:53.0180120Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0219351Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0259771Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0308538Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-18T14:12:53.0360924Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-18T14:12:53.0423283Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0463831Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0501482Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0560042Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-18T14:12:53.0669284Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:12:54.3012045Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:12:56.9713232Z Reading package lists... 2021-05-18T14:12:57.1679642Z Building dependency tree... 2021-05-18T14:12:57.1705768Z Reading state information... 2021-05-18T14:12:57.3451999Z The following additional packages will be installed: 2021-05-18T14:12:57.3453846Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-18T14:12:57.4031140Z The following NEW packages will be installed: 2021-05-18T14:12:57.4033402Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-18T14:12:57.4034917Z libmagick++-dev 2021-05-18T14:12:57.4320312Z 0 upgraded, 4 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:12:57.4321163Z Need to get 309 kB of archives. 2021-05-18T14:12:57.4322213Z After this operation, 2202 kB of additional disk space will be used. 2021-05-18T14:12:57.4324544Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-18T14:12:57.4403415Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-18T14:12:57.4597959Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-18T14:12:57.4718103Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-18T14:12:57.9628593Z Fetched 309 kB in 0s (4853 kB/s) 2021-05-18T14:12:58.0006944Z Selecting previously unselected package libmagick++-6-headers. 2021-05-18T14:12:58.0094138Z (Reading database ... 2021-05-18T14:12:58.0094943Z (Reading database ... 5% 2021-05-18T14:12:58.0095674Z (Reading database ... 10% 2021-05-18T14:12:58.0096348Z (Reading database ... 15% 2021-05-18T14:12:58.0097216Z (Reading database ... 20% 2021-05-18T14:12:58.0097828Z (Reading database ... 25% 2021-05-18T14:12:58.0098449Z (Reading database ... 30% 2021-05-18T14:12:58.0099069Z (Reading database ... 35% 2021-05-18T14:12:58.0099677Z (Reading database ... 40% 2021-05-18T14:12:58.0100469Z (Reading database ... 45% 2021-05-18T14:12:58.0101265Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-18T14:12:59.1525510Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1536560Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-18T14:12:59.1538338Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-18T14:12:59.1539749Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1540995Z Selecting previously unselected package libmagick++-dev. 2021-05-18T14:12:59.1543168Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-18T14:12:59.1546004Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1548514Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1549774Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1551046Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1552233Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-18T14:12:59.1553269Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:13:01.2270790Z Reading package lists... 2021-05-18T14:13:01.4103073Z Building dependency tree... 2021-05-18T14:13:01.4127525Z Reading state information... 2021-05-18T14:13:01.5927735Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-18T14:13:01.5929779Z The following additional packages will be installed: 2021-05-18T14:13:01.5934022Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-18T14:13:01.5940810Z libijs-0.35 libjbig2dec0 2021-05-18T14:13:01.5948361Z Suggested packages: 2021-05-18T14:13:01.5949446Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-18T14:13:01.5950275Z ghostscript-x 2021-05-18T14:13:01.6519378Z The following NEW packages will be installed: 2021-05-18T14:13:01.6523145Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-18T14:13:01.6528006Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-18T14:13:01.6778011Z 0 upgraded, 8 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:01.6779499Z Need to get 11.2 MB of archives. 2021-05-18T14:13:01.6780924Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-18T14:13:01.6783442Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-18T14:13:02.4692009Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-18T14:13:02.4744906Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-18T14:13:02.8158127Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-18T14:13:02.8476140Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-18T14:13:02.8488790Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-18T14:13:02.8533372Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-18T14:13:02.9645368Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-18T14:13:03.4759459Z Fetched 11.2 MB in 1s (8559 kB/s) 2021-05-18T14:13:03.5198337Z Selecting previously unselected package fonts-droid-fallback. 2021-05-18T14:13:03.5286858Z (Reading database ... 2021-05-18T14:13:03.5287729Z (Reading database ... 5% 2021-05-18T14:13:03.5288869Z (Reading 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... 100% 2021-05-18T14:13:03.6754569Z (Reading database ... 267393 files and directories currently installed.) 2021-05-18T14:13:03.6923355Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-18T14:13:03.7233315Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-18T14:13:03.9650992Z Selecting previously unselected package fonts-noto-mono. 2021-05-18T14:13:03.9897874Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-18T14:13:03.9909855Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-18T14:13:04.0410943Z Selecting previously unselected package fonts-urw-base35. 2021-05-18T14:13:04.0690549Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-18T14:13:04.1425743Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-18T14:13:04.5771398Z Selecting previously unselected package libgs9-common. 2021-05-18T14:13:04.6067880Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-18T14:13:04.6081718Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:13:04.7290809Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-18T14:13:04.7574910Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-18T14:13:04.7603618Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-18T14:13:04.7970039Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-18T14:13:04.8268846Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-18T14:13:04.8289615Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-18T14:13:04.8771758Z Selecting previously unselected package libgs9:amd64. 2021-05-18T14:13:04.9042827Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-18T14:13:04.9282861Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:13:05.2667209Z Selecting previously unselected package ghostscript. 2021-05-18T14:13:05.2983323Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-18T14:13:05.2993348Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:13:05.3870930Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-18T14:13:05.3926682Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-18T14:13:05.3964817Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-18T14:13:05.4802271Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-18T14:13:05.4832993Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-18T14:13:05.5121456Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:13:05.5150766Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:13:05.5180938Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-18T14:13:05.5337126Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-18T14:13:06.1554916Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:13:06.1562510Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:13:09.5550140Z Reading package lists... 2021-05-18T14:13:09.7471735Z Building dependency tree... 2021-05-18T14:13:09.7498293Z Reading state information... 2021-05-18T14:13:09.9348939Z The following additional packages will be installed: 2021-05-18T14:13:09.9350363Z libudunits2-0 libudunits2-data 2021-05-18T14:13:09.9875613Z The following NEW packages will be installed: 2021-05-18T14:13:09.9880084Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-18T14:13:10.0235429Z 0 upgraded, 3 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:10.0236276Z Need to get 429 kB of archives. 2021-05-18T14:13:10.0237092Z After this operation, 1026 kB of additional disk space will be used. 2021-05-18T14:13:10.0240237Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-18T14:13:10.0285528Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-18T14:13:10.0308625Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-18T14:13:11.1567118Z Fetched 429 kB in 0s (8382 kB/s) 2021-05-18T14:13:11.1569836Z Selecting previously unselected package libudunits2-data. 2021-05-18T14:13:11.1575660Z (Reading database ... 2021-05-18T14:13:11.1576556Z (Reading database ... 5% 2021-05-18T14:13:11.1577190Z (Reading database ... 10% 2021-05-18T14:13:11.1578274Z (Reading database ... 15% 2021-05-18T14:13:11.1578815Z (Reading database ... 20% 2021-05-18T14:13:11.1579692Z (Reading database ... 25% 2021-05-18T14:13:11.1580345Z (Reading database ... 30% 2021-05-18T14:13:11.1580883Z (Reading database ... 35% 2021-05-18T14:13:11.1581402Z (Reading database ... 40% 2021-05-18T14:13:11.1582178Z (Reading database ... 45% 2021-05-18T14:13:11.1582792Z (Reading database ... 50% 2021-05-18T14:13:11.1583328Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-18T14:13:11.1597340Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-18T14:13:11.1598688Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-18T14:13:11.1600160Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-18T14:13:11.1601275Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-18T14:13:11.1602168Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-18T14:13:11.1603087Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-18T14:13:11.1604091Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-18T14:13:11.1605100Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:13:13.7988011Z Reading package lists... 2021-05-18T14:13:14.0019945Z Building dependency tree... 2021-05-18T14:13:14.0046184Z Reading state information... 2021-05-18T14:13:14.2429097Z The following NEW packages will be installed: 2021-05-18T14:13:14.2433773Z libjq-dev 2021-05-18T14:13:14.3552205Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:14.3553077Z Need to get 11.2 kB of archives. 2021-05-18T14:13:14.3553979Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-18T14:13:14.3556159Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-18T14:13:14.8630470Z Fetched 11.2 kB in 0s (104 kB/s) 2021-05-18T14:13:14.8975276Z Selecting previously unselected package libjq-dev:amd64. 2021-05-18T14:13:14.9059984Z (Reading database ... 2021-05-18T14:13:14.9060928Z (Reading database ... 5% 2021-05-18T14:13:14.9061748Z (Reading database ... 10% 2021-05-18T14:13:14.9062552Z (Reading database ... 15% 2021-05-18T14:13:14.9063403Z (Reading database ... 20% 2021-05-18T14:13:14.9065242Z (Reading database ... 25% 2021-05-18T14:13:14.9066143Z (Reading database ... 30% 2021-05-18T14:13:14.9066915Z (Reading database ... 35% 2021-05-18T14:13:14.9067724Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-18T14:13:17.8159186Z Reading package lists... 2021-05-18T14:13:18.0044226Z Building dependency tree... 2021-05-18T14:13:18.0066843Z Reading state information... 2021-05-18T14:13:18.2299015Z The following NEW packages will be installed: 2021-05-18T14:13:18.2304594Z libmng2 2021-05-18T14:13:18.2526228Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:18.2528210Z Need to get 168 kB of archives. 2021-05-18T14:13:18.2532560Z After this operation, 571 kB of additional disk space will be used. 2021-05-18T14:13:18.2536350Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-18T14:13:18.7712111Z Fetched 168 kB in 0s (7311 kB/s) 2021-05-18T14:13:19.5133569Z Selecting previously unselected package libmng2:amd64. 2021-05-18T14:13:19.5224830Z (Reading database ... 2021-05-18T14:13:19.5225484Z (Reading database ... 5% 2021-05-18T14:13:19.5226015Z (Reading database ... 10% 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2021-05-18T14:13:20.1606007Z (Reading database ... 267992 files and directories currently installed.) 2021-05-18T14:13:20.1607704Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-18T14:13:20.1609239Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-18T14:13:20.1610819Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-18T14:13:20.1612000Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:13:23.1599791Z E: Unable to locate package libmng1 2021-05-18T14:13:23.1600858Z Reading package lists... 2021-05-18T14:13:23.1609162Z Building dependency tree... 2021-05-18T14:13:23.1610143Z Reading state information... 2021-05-18T14:13:23.1611017Z Reading package lists... 2021-05-18T14:13:23.1611866Z Building dependency tree... 2021-05-18T14:13:23.1612746Z Reading state information... 2021-05-18T14:13:23.2453157Z E: Unable to locate package libapparmor-devel 2021-05-18T14:13:23.3321770Z Reading package lists... 2021-05-18T14:13:23.5223184Z Building dependency tree... 2021-05-18T14:13:23.5245557Z Reading state information... 2021-05-18T14:13:23.6956533Z The following additional packages will be installed: 2021-05-18T14:13:23.6959132Z libij-java 2021-05-18T14:13:23.7518453Z The following NEW packages will be installed: 2021-05-18T14:13:23.7527348Z imagej libij-java 2021-05-18T14:13:23.7781346Z 0 upgraded, 2 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:23.7782200Z Need to get 2328 kB of archives. 2021-05-18T14:13:23.7783017Z After this operation, 2498 kB of additional disk space will be used. 2021-05-18T14:13:23.7785406Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-18T14:13:23.9944566Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-18T14:13:24.5025575Z Fetched 2328 kB in 0s (9852 kB/s) 2021-05-18T14:13:24.5396142Z Selecting previously unselected package libij-java. 2021-05-18T14:13:24.5485080Z (Reading 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lists... 2021-05-18T14:13:29.6096546Z Building dependency tree... 2021-05-18T14:13:29.6118560Z Reading state information... 2021-05-18T14:13:29.7881798Z Suggested packages: 2021-05-18T14:13:29.7884542Z bowtie2-examples 2021-05-18T14:13:29.8411840Z The following NEW packages will be installed: 2021-05-18T14:13:29.8421053Z bowtie2 2021-05-18T14:13:29.8656158Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:29.8657040Z Need to get 1324 kB of archives. 2021-05-18T14:13:29.8658336Z After this operation, 5630 kB of additional disk space will be used. 2021-05-18T14:13:29.8660767Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-18T14:13:30.5562195Z Fetched 1324 kB in 0s (6552 kB/s) 2021-05-18T14:13:30.6051918Z Selecting previously unselected package bowtie2. 2021-05-18T14:13:30.6143319Z (Reading database ... 2021-05-18T14:13:30.6143927Z (Reading database ... 5% 2021-05-18T14:13:30.6144458Z 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package is missing, has been obsoleted, or 2021-05-18T14:13:35.6643777Z is only available from another source 2021-05-18T14:13:35.6644280Z 2021-05-18T14:13:35.6644878Z Reading package lists... 2021-05-18T14:13:35.6646122Z E: Unable to locate package gdal 2021-05-18T14:13:35.6647757Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-18T14:13:35.7877978Z Building dependency tree... 2021-05-18T14:13:35.7899912Z Reading state information... 2021-05-18T14:13:35.8165386Z Package libav-tools is not available, but is referred to by another package. 2021-05-18T14:13:35.8166452Z This may mean that the package is missing, has been obsoleted, or 2021-05-18T14:13:35.8167244Z is only available from another source 2021-05-18T14:13:35.8167982Z However the following packages replace it: 2021-05-18T14:13:35.8168719Z ffmpeg 2021-05-18T14:13:35.8168994Z 2021-05-18T14:13:35.9270869Z E: Package 'libav-tools' has no installation candidate 2021-05-18T14:13:36.0037700Z Reading package lists... 2021-05-18T14:13:36.2156052Z Building dependency tree... 2021-05-18T14:13:36.2178959Z Reading state information... 2021-05-18T14:13:36.4038439Z The following additional packages will be installed: 2021-05-18T14:13:36.4042083Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-18T14:13:36.4045148Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-18T14:13:36.4047751Z libssh2-1-dev 2021-05-18T14:13:36.4052999Z Suggested packages: 2021-05-18T14:13:36.4053938Z libgcrypt20-doc libmbedtls-doc 2021-05-18T14:13:36.4587612Z The following NEW packages will be installed: 2021-05-18T14:13:36.4591045Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-18T14:13:36.4595656Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-18T14:13:36.4600865Z libssh2-1-dev 2021-05-18T14:13:36.4915365Z 0 upgraded, 11 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:36.4916605Z Need to get 2667 kB of archives. 2021-05-18T14:13:36.4917937Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-18T14:13:36.4919991Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-18T14:13:36.5121566Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-18T14:13:36.5945734Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-18T14:13:36.5962841Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-18T14:13:36.6261681Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-18T14:13:36.6335357Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-18T14:13:36.6471267Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-18T14:13:36.7114926Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-18T14:13:36.7801837Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-18T14:13:36.8203686Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-18T14:13:36.8250733Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-18T14:13:37.4247163Z Fetched 2667 kB in 0s (5682 kB/s) 2021-05-18T14:13:37.4618900Z Selecting previously unselected package libgpg-error-dev. 2021-05-18T14:13:37.4705502Z (Reading database ... 2021-05-18T14:13:37.4707252Z (Reading database ... 5% 2021-05-18T14:13:37.4708146Z (Reading database 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2021-05-18T14:13:37.6110983Z (Reading database ... 268047 files and directories currently installed.) 2021-05-18T14:13:37.6274593Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-18T14:13:37.6287737Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-18T14:13:37.6771854Z Selecting previously unselected package libgcrypt20-dev. 2021-05-18T14:13:37.7131933Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-18T14:13:37.7146994Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-18T14:13:37.8011905Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-18T14:13:37.8325581Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-18T14:13:37.8350833Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-18T14:13:37.8691034Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-18T14:13:37.9088556Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:13:37.9106548Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:37.9731152Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-18T14:13:38.0043917Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:13:38.0058872Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.0530642Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-18T14:13:38.0784963Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:13:38.0818356Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.1210493Z Selecting previously unselected package libgit2-28:amd64. 2021-05-18T14:13:38.1528661Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-18T14:13:38.1548520Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:13:38.2251059Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-18T14:13:38.2508725Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-18T14:13:38.2534423Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.3352100Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-18T14:13:38.3629199Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-18T14:13:38.3641118Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-18T14:13:38.4331672Z Selecting previously unselected package libhttp-parser-dev. 2021-05-18T14:13:38.4612782Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-18T14:13:38.4625198Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-18T14:13:38.5050658Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-18T14:13:38.5317620Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-18T14:13:38.5342046Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:13:38.6850060Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-18T14:13:38.6893303Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.6925422Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-18T14:13:38.6961405Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-18T14:13:38.6998529Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.7031615Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.7083168Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-18T14:13:38.7130816Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-18T14:13:38.7171202Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-18T14:13:38.7216916Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:13:38.7256216Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-18T14:13:38.7312259Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:13:44.5273839Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-18T14:13:44.6886862Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:13:47.3384692Z Reading package lists... 2021-05-18T14:13:47.5419022Z Building dependency tree... 2021-05-18T14:13:47.5450091Z Reading state information... 2021-05-18T14:13:47.8677097Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-18T14:13:47.8678744Z libtiff-dev set to manually installed. 2021-05-18T14:13:47.8679951Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:47.9442410Z Reading package lists... 2021-05-18T14:13:48.1495621Z Building dependency tree... 2021-05-18T14:13:48.1521472Z Reading state information... 2021-05-18T14:13:48.4171318Z unixodbc-dev is already the newest version (2.3.7). 2021-05-18T14:13:48.4172892Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:48.4973622Z Reading package lists... 2021-05-18T14:13:48.7109727Z Building dependency tree... 2021-05-18T14:13:48.7135998Z Reading state information... 2021-05-18T14:13:48.9461292Z The following NEW packages will be installed: 2021-05-18T14:13:48.9463461Z libsodium-dev 2021-05-18T14:13:48.9705435Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:48.9706658Z Need to get 169 kB of archives. 2021-05-18T14:13:48.9707721Z After this operation, 826 kB of additional disk space will be used. 2021-05-18T14:13:48.9710719Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-18T14:13:49.4700301Z Fetched 169 kB in 0s (5466 kB/s) 2021-05-18T14:13:49.5114679Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-18T14:13:49.5214576Z (Reading database ... 2021-05-18T14:13:49.5215538Z (Reading database ... 5% 2021-05-18T14:13:49.5216427Z (Reading database ... 10% 2021-05-18T14:13:49.5217012Z (Reading database ... 15% 2021-05-18T14:13:49.5218500Z (Reading database ... 20% 2021-05-18T14:13:49.5219119Z (Reading database ... 25% 2021-05-18T14:13:49.5219648Z (Reading database ... 30% 2021-05-18T14:13:49.5220191Z (Reading database ... 35% 2021-05-18T14:13:49.5221426Z (Reading database ... 40% 2021-05-18T14:13:49.5222677Z (Reading database ... 45% 2021-05-18T14:13:49.5224011Z (Reading database ... 50% 2021-05-18T14:13:49.5289136Z (Reading database ... 55% 2021-05-18T14:13:49.5351171Z (Reading database ... 60% 2021-05-18T14:13:49.5380688Z (Reading database ... 65% 2021-05-18T14:13:49.5547799Z (Reading database ... 70% 2021-05-18T14:13:49.5699137Z (Reading database ... 75% 2021-05-18T14:13:49.5727456Z (Reading database ... 80% 2021-05-18T14:13:49.6380639Z (Reading database ... 85% 2021-05-18T14:13:49.6581366Z (Reading database ... 90% 2021-05-18T14:13:49.6667461Z (Reading database ... 95% 2021-05-18T14:13:49.6668524Z (Reading database ... 100% 2021-05-18T14:13:49.6669470Z (Reading database ... 268550 files and directories currently installed.) 2021-05-18T14:13:49.6822914Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-18T14:13:49.6852945Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-18T14:13:49.7883640Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-18T14:13:52.4536715Z Reading package lists... 2021-05-18T14:13:52.6483454Z Building dependency tree... 2021-05-18T14:13:52.6509503Z Reading state information... 2021-05-18T14:13:52.8290682Z The following additional packages will be installed: 2021-05-18T14:13:52.8294884Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-18T14:13:52.8846493Z The following NEW packages will be installed: 2021-05-18T14:13:52.8853967Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-18T14:13:52.8858111Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-18T14:13:52.9096101Z 0 upgraded, 8 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:13:52.9097029Z Need to get 10.4 MB of archives. 2021-05-18T14:13:52.9097834Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-18T14:13:52.9099932Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-18T14:13:52.9746952Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-18T14:13:53.6672952Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-18T14:13:53.6678749Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-18T14:13:53.6681067Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-18T14:13:53.6683353Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-18T14:13:53.7494132Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-18T14:13:54.1491125Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-18T14:13:54.6999101Z Fetched 10.4 MB in 1s (7978 kB/s) 2021-05-18T14:13:54.7359094Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-18T14:13:54.7450203Z (Reading database ... 2021-05-18T14:13:54.7451263Z (Reading database ... 5% 2021-05-18T14:13:54.7452214Z (Reading database ... 10% 2021-05-18T14:13:54.7453104Z (Reading database ... 15% 2021-05-18T14:13:54.7453898Z (Reading database ... 20% 2021-05-18T14:13:54.7454715Z (Reading database ... 25% 2021-05-18T14:13:54.7457332Z (Reading database ... 30% 2021-05-18T14:13:54.7458328Z (Reading database ... 35% 2021-05-18T14:13:54.7459758Z (Reading database ... 40% 2021-05-18T14:13:54.7460621Z (Reading database ... 45% 2021-05-18T14:13:54.7461401Z (Reading database 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.../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-18T14:13:55.0258759Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-18T14:13:55.1611313Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-18T14:13:55.1864560Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-18T14:13:55.1887729Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-18T14:13:55.3610647Z Selecting previously unselected package libtesseract4:amd64. 2021-05-18T14:13:55.3918118Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-18T14:13:55.3934695Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-18T14:13:55.5451630Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-18T14:13:55.5755291Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-18T14:13:55.5771027Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-18T14:13:55.7720591Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-18T14:13:55.8068293Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-18T14:13:55.8097486Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:13:56.0090581Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-18T14:13:56.0375235Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-18T14:13:56.0387228Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:13:56.4451140Z Selecting previously unselected package tesseract-ocr. 2021-05-18T14:13:56.4748189Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-18T14:13:56.4760137Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-18T14:13:56.5774424Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:13:56.5812033Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-18T14:13:56.5857121Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-18T14:13:56.5934428Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-18T14:13:56.5974135Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-18T14:13:56.6006778Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-18T14:13:56.6047822Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-18T14:13:56.6084450Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-18T14:13:56.6122380Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:14:00.2496049Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:14:02.9154318Z Reading package lists... 2021-05-18T14:14:03.1045903Z Building dependency tree... 2021-05-18T14:14:03.1083690Z Reading state information... 2021-05-18T14:14:03.4082110Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-18T14:14:03.4083150Z 0 upgraded, 0 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:03.4871397Z Reading package lists... 2021-05-18T14:14:03.6880434Z Building dependency tree... 2021-05-18T14:14:03.6905077Z Reading state information... 2021-05-18T14:14:03.8828220Z The following additional packages will be installed: 2021-05-18T14:14:03.8830898Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-18T14:14:03.8832146Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-18T14:14:03.8837723Z Suggested packages: 2021-05-18T14:14:03.8838967Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-18T14:14:03.9490196Z The following NEW packages will be installed: 2021-05-18T14:14:03.9494830Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-18T14:14:03.9497798Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-18T14:14:03.9743707Z 0 upgraded, 10 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:03.9744909Z Need to get 1459 kB of archives. 2021-05-18T14:14:03.9745729Z After this operation, 7754 kB of additional disk space will be used. 2021-05-18T14:14:03.9747875Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-18T14:14:03.9922508Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-18T14:14:04.0069220Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-18T14:14:04.0242884Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-18T14:14:04.0359162Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-18T14:14:04.0493549Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-18T14:14:04.0855307Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-18T14:14:04.2325006Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-18T14:14:04.2961484Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-18T14:14:04.3026960Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-18T14:14:04.9436759Z Fetched 1459 kB in 0s (3062 kB/s) 2021-05-18T14:14:04.9848247Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-18T14:14:04.9950044Z (Reading database ... 2021-05-18T14:14:04.9950713Z (Reading database ... 5% 2021-05-18T14:14:04.9951260Z (Reading database ... 10% 2021-05-18T14:14:04.9951791Z (Reading database ... 15% 2021-05-18T14:14:04.9952328Z (Reading database ... 20% 2021-05-18T14:14:04.9952870Z (Reading database ... 25% 2021-05-18T14:14:04.9953426Z (Reading database ... 30% 2021-05-18T14:14:04.9953975Z (Reading database ... 35% 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2021-05-18T14:14:05.2131255Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-18T14:14:05.2410329Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:14:05.2425011Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:05.2755247Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-18T14:14:05.3094936Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:14:05.3109861Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:05.3530671Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-18T14:14:05.3798992Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:14:05.3816018Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:05.4291204Z Selecting previously unselected package comerr-dev:amd64. 2021-05-18T14:14:05.4610316Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-18T14:14:05.4686334Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-18T14:14:05.5092154Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-18T14:14:05.5362765Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:14:05.5375729Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:05.5931037Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-18T14:14:05.6177646Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-18T14:14:05.6191381Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-18T14:14:05.7131022Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-18T14:14:05.7386343Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-18T14:14:05.7401305Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-18T14:14:05.7890699Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-18T14:14:05.8191340Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-18T14:14:05.8204906Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:05.8571011Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-18T14:14:05.8868770Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-18T14:14:05.8884586Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-18T14:14:06.0079878Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-18T14:14:06.0120042Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:06.0155778Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-18T14:14:06.0189969Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-18T14:14:06.0237783Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:06.0320629Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:06.0355881Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:06.0410266Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:06.0468056Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-18T14:14:06.0505753Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-18T14:14:06.0555172Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:14:06.0833808Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:14:09.8725287Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-18T14:14:12.6958262Z Reading package lists... 2021-05-18T14:14:12.8951079Z Building dependency tree... 2021-05-18T14:14:12.8973212Z Reading state information... 2021-05-18T14:14:13.0584810Z E: Unable to locate package udunits 2021-05-18T14:14:13.1336141Z Reading package lists... 2021-05-18T14:14:13.3216608Z Building dependency tree... 2021-05-18T14:14:13.3239611Z Reading state information... 2021-05-18T14:14:13.5081986Z The following additional packages will be installed: 2021-05-18T14:14:13.5084280Z libwebpdemux2 2021-05-18T14:14:13.5654315Z The following NEW packages will be installed: 2021-05-18T14:14:13.5656954Z libwebp-dev libwebpdemux2 2021-05-18T14:14:13.5890015Z 0 upgraded, 2 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:13.5891379Z Need to get 277 kB of archives. 2021-05-18T14:14:13.5892177Z After this operation, 965 kB of additional disk space will be used. 2021-05-18T14:14:13.5894124Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-18T14:14:13.5933355Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-18T14:14:14.1610276Z Fetched 277 kB in 0s (3706 kB/s) 2021-05-18T14:14:14.2014326Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-18T14:14:14.2111101Z (Reading database ... 2021-05-18T14:14:14.2111742Z (Reading database ... 5% 2021-05-18T14:14:14.2113664Z (Reading database ... 10% 2021-05-18T14:14:14.2114165Z (Reading database ... 15% 2021-05-18T14:14:14.2115195Z (Reading database ... 20% 2021-05-18T14:14:14.2115932Z (Reading database ... 25% 2021-05-18T14:14:14.2116456Z (Reading database ... 30% 2021-05-18T14:14:14.2117028Z (Reading database ... 35% 2021-05-18T14:14:14.2117562Z (Reading database ... 40% 2021-05-18T14:14:14.2118079Z (Reading database ... 45% 2021-05-18T14:14:14.2118611Z (Reading database ... 50% 2021-05-18T14:14:14.2162567Z (Reading database ... 55% 2021-05-18T14:14:14.2221914Z (Reading database ... 60% 2021-05-18T14:14:14.2257061Z (Reading database ... 65% 2021-05-18T14:14:14.2420227Z (Reading database ... 70% 2021-05-18T14:14:14.2559645Z (Reading database ... 75% 2021-05-18T14:14:14.2588782Z (Reading database ... 80% 2021-05-18T14:14:14.3049693Z (Reading database ... 85% 2021-05-18T14:14:14.3444412Z (Reading database ... 90% 2021-05-18T14:14:14.3543162Z (Reading database ... 95% 2021-05-18T14:14:14.3543730Z (Reading database ... 100% 2021-05-18T14:14:14.3544607Z (Reading database ... 269145 files and directories currently installed.) 2021-05-18T14:14:14.3712890Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-18T14:14:14.3741907Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-18T14:14:14.4050703Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-18T14:14:14.4349404Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-18T14:14:14.4362070Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-18T14:14:14.5469434Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-18T14:14:14.5590367Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-18T14:14:14.5639956Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:14:17.2652149Z Reading package lists... 2021-05-18T14:14:17.4628168Z Building dependency tree... 2021-05-18T14:14:17.4653949Z Reading state information... 2021-05-18T14:14:17.6450178Z The following additional packages will be installed: 2021-05-18T14:14:17.6452993Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-18T14:14:17.6454954Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-18T14:14:17.6456713Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-18T14:14:17.6462741Z Suggested packages: 2021-05-18T14:14:17.6463985Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-18T14:14:17.6465096Z Recommended packages: 2021-05-18T14:14:17.6465855Z cargo 2021-05-18T14:14:17.7076886Z The following NEW packages will be installed: 2021-05-18T14:14:17.7079937Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-18T14:14:17.7082297Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-18T14:14:17.7084028Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-18T14:14:17.7414117Z 0 upgraded, 13 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:14:17.7414960Z Need to get 108 MB of archives. 2021-05-18T14:14:17.7415916Z After this operation, 501 MB of additional disk space will be used. 2021-05-18T14:14:17.7417960Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-18T14:14:17.7906171Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-18T14:14:17.8014484Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-18T14:14:17.8163269Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-18T14:14:17.9360913Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-18T14:14:17.9558899Z Get:6 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-18T14:14:17.9821731Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-18T14:14:17.9873374Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-18T14:14:38.0260002Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-18T14:14:49.0227501Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-18T14:14:49.7204059Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-18T14:14:50.8644707Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-18T14:14:54.3816638Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-18T14:14:54.9024482Z Fetched 108 MB in 37s (2943 kB/s) 2021-05-18T14:14:54.9410824Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-18T14:14:54.9497356Z (Reading database ... 2021-05-18T14:14:54.9498021Z (Reading database ... 5% 2021-05-18T14:14:54.9498592Z (Reading database ... 10% 2021-05-18T14:14:54.9499269Z (Reading database ... 15% 2021-05-18T14:14:54.9499789Z (Reading database ... 20% 2021-05-18T14:14:54.9500442Z (Reading database ... 25% 2021-05-18T14:14:54.9500937Z (Reading database ... 30% 2021-05-18T14:14:54.9501622Z (Reading database ... 35% 2021-05-18T14:14:54.9502124Z (Reading database ... 40% 2021-05-18T14:14:54.9502639Z (Reading database ... 45% 2021-05-18T14:14:54.9503298Z (Reading database ... 50% 2021-05-18T14:14:54.9550557Z (Reading database ... 55% 2021-05-18T14:14:54.9601399Z (Reading database ... 60% 2021-05-18T14:14:54.9641203Z (Reading database ... 65% 2021-05-18T14:14:54.9792932Z (Reading database ... 70% 2021-05-18T14:14:54.9929148Z (Reading database ... 75% 2021-05-18T14:14:54.9960440Z (Reading database ... 80% 2021-05-18T14:14:55.0425491Z (Reading database ... 85% 2021-05-18T14:14:55.0853921Z (Reading database ... 90% 2021-05-18T14:14:55.0950719Z (Reading database ... 95% 2021-05-18T14:14:55.0951375Z (Reading database ... 100% 2021-05-18T14:14:55.0952218Z (Reading database ... 269173 files and directories currently installed.) 2021-05-18T14:14:55.1122473Z Preparing to unpack .../00-libbabeltrace1_1.5.8-1build1_amd64.deb ... 2021-05-18T14:14:55.1149568Z Unpacking libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-18T14:14:55.1650258Z Selecting previously unselected package libipt2. 2021-05-18T14:14:55.1967182Z Preparing to unpack .../01-libipt2_2.0.1-1_amd64.deb ... 2021-05-18T14:14:55.1980867Z Unpacking libipt2 (2.0.1-1) ... 2021-05-18T14:14:55.2451711Z Selecting previously unselected package libsource-highlight-common. 2021-05-18T14:14:55.2714082Z Preparing to unpack .../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-18T14:14:55.2740003Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-18T14:14:55.3343981Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-18T14:14:55.3672336Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-18T14:14:55.3686783Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-18T14:14:55.4561443Z Selecting previously unselected package libsource-highlight4v5. 2021-05-18T14:14:55.4941249Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-18T14:14:55.4990339Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-18T14:14:55.5580883Z Selecting previously unselected package libxxhash0:amd64. 2021-05-18T14:14:55.5897002Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-18T14:14:55.5909733Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-18T14:14:55.6252084Z Selecting previously unselected package gdb. 2021-05-18T14:14:55.6576339Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-18T14:14:55.6591390Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-18T14:14:56.0372266Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-18T14:14:56.0693517Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:14:56.0710928Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:02.7907436Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-18T14:15:02.8231904Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:15:02.8248841Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:06.1937590Z Selecting previously unselected package rustc. 2021-05-18T14:15:06.2286212Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:15:06.2300741Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:06.4516357Z Selecting previously unselected package cargo. 2021-05-18T14:15:06.4833867Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-18T14:15:06.4845045Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-18T14:15:06.8532187Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-18T14:15:06.8876072Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-18T14:15:06.8888792Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-18T14:15:08.2055430Z Selecting previously unselected package rust-gdb. 2021-05-18T14:15:08.2375467Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-18T14:15:08.2389965Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:08.3126526Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:08.3164098Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-18T14:15:08.3200681Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-18T14:15:08.3237897Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:09.1905507Z Setting up libipt2 (2.0.1-1) ... 2021-05-18T14:15:09.1907083Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-18T14:15:09.1908502Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-18T14:15:09.1909760Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:09.1911060Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-18T14:15:09.1912407Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-18T14:15:09.1913763Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-18T14:15:09.1915081Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-18T14:15:09.1916192Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-18T14:15:09.1917381Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:15:09.1918438Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:15:12.4726813Z Reading package lists... 2021-05-18T14:15:12.6582571Z Building dependency tree... 2021-05-18T14:15:12.6609534Z Reading state information... 2021-05-18T14:15:12.8494269Z The following additional packages will be installed: 2021-05-18T14:15:12.8497131Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-18T14:15:12.8500183Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-18T14:15:12.8504704Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-18T14:15:12.8506131Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-18T14:15:12.8507572Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-18T14:15:12.8509101Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-18T14:15:12.8510386Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-18T14:15:12.8513655Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-18T14:15:12.8515556Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-18T14:15:12.8517180Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-18T14:15:12.8518968Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-18T14:15:12.8520454Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-18T14:15:12.8521985Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-18T14:15:12.8523690Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-18T14:15:12.8525335Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-18T14:15:12.8526865Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-18T14:15:12.8528878Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-18T14:15:12.8530479Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-18T14:15:12.8532026Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-18T14:15:12.8533287Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-18T14:15:12.8534517Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-18T14:15:12.8535798Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-18T14:15:12.8537103Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-18T14:15:12.8538342Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-18T14:15:12.8539761Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-18T14:15:12.8541278Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-18T14:15:12.8542830Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-18T14:15:12.8544409Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-18T14:15:12.8545973Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-18T14:15:12.8547503Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-18T14:15:12.8549152Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-18T14:15:12.8550579Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-18T14:15:12.8552156Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-18T14:15:12.8553853Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-18T14:15:12.8555451Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-18T14:15:12.8557089Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-18T14:15:12.8558636Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-18T14:15:12.8560101Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-18T14:15:12.8561585Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-18T14:15:12.8563096Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-18T14:15:12.8575473Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-18T14:15:12.8577520Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-18T14:15:12.8578949Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-18T14:15:12.8580576Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-18T14:15:12.8582414Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-18T14:15:12.8584468Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-18T14:15:12.8586009Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-18T14:15:12.8587564Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-18T14:15:12.8588975Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-18T14:15:12.8589731Z Suggested packages: 2021-05-18T14:15:12.8590839Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-18T14:15:12.8592189Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-18T14:15:12.8593827Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-18T14:15:12.8595511Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-18T14:15:12.8596814Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-18T14:15:12.8598193Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-18T14:15:12.8600431Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-18T14:15:12.8601922Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-18T14:15:12.8603306Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-18T14:15:12.8604733Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-18T14:15:12.8606274Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-18T14:15:12.8607854Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-18T14:15:12.8609620Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-18T14:15:12.8610736Z wpagui libengine-pkcs11-openssl 2021-05-18T14:15:12.9596861Z The following NEW packages will be installed: 2021-05-18T14:15:12.9599043Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-18T14:15:12.9601046Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-18T14:15:12.9602766Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-18T14:15:12.9604463Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-18T14:15:12.9606140Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-18T14:15:12.9607771Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-18T14:15:12.9609643Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-18T14:15:12.9611322Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-18T14:15:12.9612995Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-18T14:15:12.9614683Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-18T14:15:12.9616337Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-18T14:15:12.9618556Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-18T14:15:12.9621253Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-18T14:15:12.9623078Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-18T14:15:12.9625159Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-18T14:15:12.9628161Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-18T14:15:12.9629896Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-18T14:15:12.9631632Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-18T14:15:12.9633820Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-18T14:15:12.9635312Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-18T14:15:12.9636728Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-18T14:15:12.9638188Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-18T14:15:12.9639552Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-18T14:15:12.9640860Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-18T14:15:12.9642198Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-18T14:15:12.9643948Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-18T14:15:12.9645677Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-18T14:15:12.9649574Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-18T14:15:12.9651271Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-18T14:15:12.9652763Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-18T14:15:12.9654095Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-18T14:15:12.9655388Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-18T14:15:12.9656813Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-18T14:15:12.9658596Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-18T14:15:12.9660129Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-18T14:15:12.9661993Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-18T14:15:12.9663457Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-18T14:15:12.9664732Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-18T14:15:12.9665972Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-18T14:15:12.9667294Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-18T14:15:12.9668999Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-18T14:15:12.9670551Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-18T14:15:12.9671937Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-18T14:15:12.9673553Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-18T14:15:12.9675621Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-18T14:15:12.9677065Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-18T14:15:12.9678478Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-18T14:15:12.9680008Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-18T14:15:12.9681327Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-18T14:15:13.0069450Z 0 upgraded, 214 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:15:13.0070230Z Need to get 183 MB of archives. 2021-05-18T14:15:13.0071155Z After this operation, 776 MB of additional disk space will be used. 2021-05-18T14:15:13.0073947Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-18T14:15:13.0229122Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-18T14:15:13.5057647Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-18T14:15:13.5295077Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-18T14:15:13.5382369Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-18T14:15:13.5481073Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-18T14:15:13.5523345Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-18T14:15:13.5655713Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-18T14:15:13.5726550Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-18T14:15:13.5817003Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-18T14:15:13.6065024Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-18T14:15:13.6524031Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-18T14:15:13.7987948Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-18T14:15:13.8036252Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-18T14:15:13.8083572Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-18T14:15:13.8141595Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-18T14:15:13.8190756Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-18T14:15:13.8265594Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-18T14:15:13.8319673Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-18T14:15:13.8353170Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-18T14:15:13.8438202Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-18T14:15:13.8522649Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-18T14:15:13.8574777Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-18T14:15:14.5087524Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-18T14:15:15.0114604Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-18T14:15:15.0450810Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-18T14:15:15.0846084Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-18T14:15:15.2411405Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-18T14:15:15.2504227Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-18T14:15:15.2950540Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-18T14:15:15.3427409Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-18T14:15:15.6362500Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-18T14:15:15.9186560Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-18T14:15:15.9436201Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-18T14:15:15.9574129Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-18T14:15:15.9695855Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-18T14:15:18.5116201Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-18T14:15:18.5471885Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-18T14:15:18.7583058Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-18T14:15:18.9123792Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-18T14:15:18.9520635Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-18T14:15:18.9822905Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-18T14:15:18.9963984Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-18T14:15:19.0383825Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-18T14:15:19.0590178Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-18T14:15:19.0982791Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-18T14:15:19.1193538Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-18T14:15:19.2172717Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-18T14:15:19.2349124Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-18T14:15:19.3327215Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-18T14:15:19.3541979Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-18T14:15:19.3667978Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-18T14:15:19.3772618Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-18T14:15:19.4199358Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-18T14:15:19.5574990Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-18T14:15:19.5772575Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-18T14:15:21.3698827Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-18T14:15:21.6210640Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-18T14:15:21.6339885Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-18T14:15:21.7120416Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-18T14:15:21.7238493Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-18T14:15:21.7390112Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-18T14:15:21.7547494Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-18T14:15:21.7956924Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-18T14:15:21.8165562Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-18T14:15:21.8950245Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-18T14:15:21.9428825Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-18T14:15:21.9776357Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-18T14:15:22.2647732Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-18T14:15:22.4494474Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-18T14:15:23.9122229Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-18T14:15:23.9212524Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-18T14:15:23.9598916Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-18T14:15:23.9696248Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-18T14:15:23.9970974Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-18T14:15:24.0559606Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-18T14:15:24.0965767Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-18T14:15:25.3096564Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-18T14:15:25.3202727Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-18T14:15:25.3355202Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-18T14:15:25.6209771Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-18T14:15:25.6406510Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-18T14:15:25.6711705Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-18T14:15:25.7855262Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-18T14:15:26.5141630Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-18T14:15:26.9281704Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-18T14:15:26.9479743Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-18T14:15:26.9524130Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-18T14:15:26.9673194Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-18T14:15:27.0803707Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-18T14:15:27.0828101Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-18T14:15:27.1165887Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-18T14:15:27.1329940Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-18T14:15:27.1750316Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-18T14:15:27.2045234Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-18T14:15:27.2197429Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-18T14:15:27.7914006Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-18T14:15:27.8803388Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-18T14:15:27.9228237Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-18T14:15:27.9261912Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-18T14:15:27.9626489Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-18T14:15:27.9963298Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-18T14:15:28.0911994Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-18T14:15:28.1393201Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-18T14:15:28.1558853Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-18T14:15:28.3818647Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-18T14:15:28.4289535Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-18T14:15:37.4683291Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-18T14:15:37.4854376Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-18T14:15:37.4863908Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-18T14:15:37.9243668Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-18T14:15:39.4074679Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-18T14:15:39.4209409Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-18T14:15:39.4492258Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-18T14:15:39.5971223Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-18T14:15:39.6089838Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-18T14:15:40.2474006Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-18T14:15:40.5005557Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-18T14:15:40.5366230Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-18T14:15:40.5413627Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-18T14:15:40.5519248Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-18T14:15:40.6182253Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-18T14:15:40.6452478Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-18T14:15:40.6491898Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-18T14:15:40.6552855Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-18T14:15:40.6970376Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-18T14:15:40.7053222Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-18T14:15:40.7125760Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-18T14:15:40.7510379Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-18T14:15:40.7874268Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-18T14:15:40.8342412Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-18T14:15:40.8762723Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-18T14:15:40.9467337Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-18T14:15:41.2786539Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-18T14:15:41.3268347Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-18T14:15:41.3667178Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-18T14:15:41.4335025Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-18T14:15:41.6508126Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-18T14:15:41.7161988Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-18T14:15:41.7731619Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-18T14:15:41.8077163Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-18T14:15:41.8700744Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-18T14:15:41.9135512Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-18T14:15:41.9535755Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-18T14:15:42.0073044Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-18T14:15:42.0442916Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-18T14:15:42.0796966Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-18T14:15:42.1526007Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-18T14:15:42.3902126Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-18T14:15:43.0858034Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-18T14:15:43.0925582Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-18T14:15:43.2037994Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-18T14:15:43.2356004Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-18T14:15:43.2508677Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-18T14:15:43.3444511Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-18T14:15:43.3515819Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-18T14:15:43.9519403Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-18T14:15:44.1037454Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-18T14:15:44.7015362Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-18T14:15:45.0562646Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-18T14:15:45.1602698Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-18T14:15:45.2399203Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-18T14:15:45.2506016Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-18T14:15:45.3747968Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-18T14:15:45.3788357Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-18T14:15:45.4121676Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-18T14:15:45.4156151Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-18T14:15:45.5844283Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-18T14:15:45.6609435Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-18T14:15:46.4930437Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-18T14:15:46.5009739Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-18T14:15:46.5225940Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-18T14:15:46.5272760Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-18T14:15:46.5500786Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-18T14:15:46.5553044Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-18T14:15:46.6385441Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-18T14:15:46.6424074Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-18T14:15:46.6692133Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-18T14:15:46.6770043Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-18T14:15:46.6944839Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-18T14:15:46.7089950Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-18T14:15:46.7290853Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-18T14:15:47.0797087Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-18T14:15:47.0935537Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-18T14:15:48.2408012Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-18T14:15:48.2515210Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-18T14:15:48.2640050Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-18T14:15:48.3402989Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-18T14:15:48.3770539Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-18T14:15:48.4078260Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-18T14:15:48.5123184Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-18T14:15:48.5429184Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-18T14:15:49.0387722Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-18T14:15:49.0807157Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-18T14:15:49.1014858Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-18T14:15:49.6530228Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-18T14:15:49.7295636Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-18T14:15:49.7498622Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-18T14:15:49.7589821Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-18T14:15:49.8085972Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-18T14:15:50.5556757Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-18T14:15:52.2793757Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-18T14:15:52.3084224Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-18T14:15:52.3685207Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-18T14:15:55.2009389Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-18T14:15:56.0651926Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-18T14:15:56.1544172Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-18T14:15:56.1713532Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-18T14:15:56.2724961Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-18T14:15:56.3017333Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-18T14:15:56.5787357Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-18T14:15:56.8044439Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-18T14:15:56.8226898Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-18T14:15:56.8325518Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-18T14:15:58.1582124Z Fetched 183 MB in 44s (4171 kB/s) 2021-05-18T14:15:58.1972916Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-18T14:15:58.2058538Z (Reading database ... 2021-05-18T14:15:58.2059622Z (Reading database ... 5% 2021-05-18T14:15:58.2060461Z (Reading database ... 10% 2021-05-18T14:15:58.2061257Z (Reading database ... 15% 2021-05-18T14:15:58.2062051Z (Reading database ... 20% 2021-05-18T14:15:58.2062848Z (Reading database ... 25% 2021-05-18T14:15:58.2063642Z (Reading database ... 30% 2021-05-18T14:15:58.2064434Z (Reading database ... 35% 2021-05-18T14:15:58.2065227Z (Reading database ... 40% 2021-05-18T14:15:58.2066003Z (Reading database ... 45% 2021-05-18T14:15:58.2066780Z (Reading database ... 50% 2021-05-18T14:15:58.2107072Z (Reading database ... 55% 2021-05-18T14:15:58.2154602Z (Reading database ... 60% 2021-05-18T14:15:58.2188213Z (Reading database ... 65% 2021-05-18T14:15:58.2325289Z (Reading database ... 70% 2021-05-18T14:15:58.2457935Z (Reading database ... 75% 2021-05-18T14:15:58.2487081Z (Reading database ... 80% 2021-05-18T14:15:58.2951242Z (Reading database ... 85% 2021-05-18T14:15:58.3329034Z (Reading database ... 90% 2021-05-18T14:15:58.3423571Z (Reading database ... 95% 2021-05-18T14:15:58.3424137Z (Reading database ... 100% 2021-05-18T14:15:58.3424980Z (Reading database ... 269928 files and directories currently installed.) 2021-05-18T14:15:58.3593478Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-18T14:15:58.3614942Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-18T14:15:58.4170438Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-18T14:15:58.4432053Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-18T14:15:58.4527032Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:15:58.6850959Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-18T14:15:58.7130510Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:15:58.7145722Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-18T14:15:58.7570575Z Selecting previously unselected package libegl1:amd64. 2021-05-18T14:15:58.7920251Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-18T14:15:58.7936637Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-18T14:15:58.8290222Z Selecting previously unselected package libevdev2:amd64. 2021-05-18T14:15:58.8601958Z Preparing to unpack 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2021-05-18T14:16:39.2133092Z Setting up libkmldom1:amd64 (1.3.0-8build1) ... 2021-05-18T14:16:39.2178438Z Setting up libspatialite7:amd64 (4.3.0a-6build1) ... 2021-05-18T14:16:39.2210756Z Setting up libgcr-ui-3-1:amd64 (3.36.0-2build1) ... 2021-05-18T14:16:39.2243464Z Setting up python3-matplotlib (3.1.2-1ubuntu4) ... 2021-05-18T14:16:40.3779346Z Setting up libkmlengine1:amd64 (1.3.0-8build1) ... 2021-05-18T14:16:40.3850579Z Setting up libqt5keychain1:amd64 (0.10.0-1build1) ... 2021-05-18T14:16:40.3886795Z Setting up libsqlite3-mod-spatialite:amd64 (4.3.0a-6build1) ... 2021-05-18T14:16:40.3918763Z Setting up qdoc-qt5 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:40.3950243Z Setting up libqt5positioning5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:40.3985677Z Setting up proj-bin (6.3.1-1) ... 2021-05-18T14:16:40.4018263Z Setting up libqca-qt5-2-plugins:amd64 (2.2.1-2build1) ... 2021-05-18T14:16:40.4047507Z Setting up libgstreamer-plugins-base1.0-0:amd64 (1.16.2-4) ... 2021-05-18T14:16:40.4113949Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-18T14:16:40.9246509Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-18T14:16:40.9296119Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:40.9331721Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-18T14:16:41.1385680Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-18T14:16:41.1421961Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-18T14:16:41.3432875Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:41.3474181Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-18T14:16:41.5867244Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-18T14:16:41.5960690Z Setting up gcr (3.36.0-2build1) ... 2021-05-18T14:16:41.5993276Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:41.6026543Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-18T14:16:41.7823688Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-18T14:16:41.7835417Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-18T14:16:42.4278028Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-18T14:16:42.7746715Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:42.7790968Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-18T14:16:42.7823339Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:42.7863378Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:16:42.7911542Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:42.7957750Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:42.8013456Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-18T14:16:42.9951407Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:42.9953680Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-18T14:16:42.9956682Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:42.9958443Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-18T14:16:43.0451870Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:43.0453591Z if direction is "increasing": 2021-05-18T14:16:43.0455501Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:43.0456884Z elif direction is "decreasing": 2021-05-18T14:16:43.0659414Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:43.0662991Z if direction is "increasing": 2021-05-18T14:16:43.0664946Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:43.0666331Z elif direction is "decreasing": 2021-05-18T14:16:44.1396401Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:44.1398088Z if props["offset_coordinates"] is "data": 2021-05-18T14:16:44.1400094Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-18T14:16:44.1401499Z if props["coordinates"] is not "data": 2021-05-18T14:16:45.1290689Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-18T14:16:45.7778866Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-18T14:16:45.7782321Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-18T14:16:45.7784984Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-18T14:16:47.2134058Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-18T14:16:47.2168116Z First installation detected... 2021-05-18T14:16:47.2169667Z Checking NSS setup... 2021-05-18T14:16:47.2222244Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-18T14:16:47.2347069Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:47.2348975Z Setting up python3-owslib (0.19.1-1) ... 2021-05-18T14:16:47.5745019Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-18T14:16:47.5778621Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-18T14:16:47.5817348Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-18T14:16:47.5854567Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-18T14:16:47.5900620Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-18T14:16:47.5967444Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-18T14:16:47.6016599Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-18T14:16:47.6075643Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-18T14:16:47.6117282Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-18T14:16:47.8559158Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-18T14:16:47.8605744Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-18T14:16:47.8643788Z Setting up grass-core (7.8.2-1build3) ... 2021-05-18T14:16:48.2757436Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:48.2759181Z if value is '': 2021-05-18T14:16:48.3946012Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:48.3947299Z if do_profiling is "True" or do_profiling is "1": 2021-05-18T14:16:48.3948895Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:48.3949899Z if do_profiling is "True" or do_profiling is "1": 2021-05-18T14:16:48.3951026Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-18T14:16:48.3952104Z if driver_string is not None and driver_string is not "": 2021-05-18T14:16:48.4465619Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:48.4466822Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-18T14:16:48.4468078Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-18T14:16:48.4469195Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-18T14:16:48.5206946Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-18T14:16:48.5238862Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.5344923Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-18T14:16:48.5386556Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.5452110Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.5652139Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:48.5699396Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.5738823Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.5774954Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:16:48.5817306Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.5854217Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-18T14:16:48.6993919Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:48.7027628Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.7065374Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:48.7137692Z Setting up modemmanager (1.12.8-1) ... 2021-05-18T14:16:48.8860078Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-18T14:16:48.8864325Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-18T14:16:49.5529893Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:49.5604244Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-18T14:16:49.5640234Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-18T14:16:49.5672721Z Setting up libqt5svg5:amd64 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2021-05-18T14:16:49.6183620Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-18T14:16:49.6217252Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-18T14:16:49.6258729Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:16:49.6339741Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:49.6373384Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-18T14:16:49.8447047Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-18T14:16:49.8481584Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:49.8516247Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:16:49.8571113Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.4551765Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:29.4610876Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-18T14:17:29.4659645Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.4708198Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:29.4743428Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.4792421Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.4827987Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-18T14:17:29.4861266Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.6623712Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.6671569Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-18T14:17:29.6710832Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.6749251Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-18T14:17:29.6782816Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.8809717Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.8839234Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.8879689Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-18T14:17:29.9029754Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-18T14:17:29.9157860Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-18T14:17:31.1558833Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-18T14:17:31.1788341Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-18T14:17:31.2085586Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-18T14:17:31.2343240Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-18T14:17:31.2821813Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-18T14:17:31.3166385Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-18T14:17:31.6247966Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:17:45.3477812Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-18T14:17:45.3778645Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-18T14:17:47.9632136Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-18T14:17:47.9632744Z with: 2021-05-18T14:17:47.9633262Z github_slug: neuroconductor/oasis 2021-05-18T14:17:47.9633821Z env: 2021-05-18T14:17:47.9634284Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:17:47.9634818Z TIC_DEPLOY_KEY: 2021-05-18T14:17:47.9635669Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:17:47.9637480Z GITHUB_PAT: *** 2021-05-18T14:17:47.9638404Z COVERALLS_TOKEN: *** 2021-05-18T14:17:47.9638938Z continue-on-error: true 2021-05-18T14:17:47.9639440Z VDIFFR_RUN_TESTS: 2021-05-18T14:17:47.9639973Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:17:47.9640449Z TZ: UTC 2021-05-18T14:17:47.9640872Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:17:47.9641326Z NOT_CRAN: true 2021-05-18T14:17:47.9641722Z ##[endgroup] 2021-05-18T14:17:48.0070727Z repo slug is: neuroconductor/oasis 2021-05-18T14:17:48.0179388Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-18T14:17:48.0180172Z env: 2021-05-18T14:17:48.0180640Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:17:48.0181274Z TIC_DEPLOY_KEY: 2021-05-18T14:17:48.0182082Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:17:48.0183577Z GITHUB_PAT: *** 2021-05-18T14:17:48.0184412Z COVERALLS_TOKEN: *** 2021-05-18T14:17:48.0184911Z continue-on-error: true 2021-05-18T14:17:48.0185901Z VDIFFR_RUN_TESTS: 2021-05-18T14:17:48.0186718Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:17:48.0187175Z TZ: UTC 2021-05-18T14:17:48.0187747Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:17:48.0188168Z NOT_CRAN: true 2021-05-18T14:17:48.0188566Z ##[endgroup] 2021-05-18T14:17:48.2626369Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-18T14:17:48.2627016Z with: 2021-05-18T14:17:48.2627418Z repo_name: oasis 2021-05-18T14:17:48.2628417Z repo_version: 3.0.1 2021-05-18T14:17:48.2628844Z runner_os: Linux 2021-05-18T14:17:48.2629251Z R_version: 4.1 2021-05-18T14:17:48.2629613Z env: 2021-05-18T14:17:48.2630089Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:17:48.2630601Z TIC_DEPLOY_KEY: 2021-05-18T14:17:48.2631445Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:17:48.2633250Z GITHUB_PAT: *** 2021-05-18T14:17:48.2634129Z COVERALLS_TOKEN: *** 2021-05-18T14:17:48.2634648Z continue-on-error: true 2021-05-18T14:17:48.2635177Z VDIFFR_RUN_TESTS: 2021-05-18T14:17:48.2635687Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:17:48.2636171Z TZ: UTC 2021-05-18T14:17:48.2636591Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:17:48.2637026Z NOT_CRAN: true 2021-05-18T14:17:48.2637444Z ##[endgroup] 2021-05-18T14:17:48.3070421Z Package: oasis 2021-05-18T14:17:48.3076367Z Version: 3.0.1 2021-05-18T14:17:48.3077550Z OS: Linux 2021-05-18T14:17:48.3148923Z ##[group]Run install.packages('remotes') 2021-05-18T14:17:48.3149707Z install.packages('remotes') 2021-05-18T14:17:48.3150563Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-18T14:17:48.3151645Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-18T14:17:48.3159650Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:17:48.3160173Z env: 2021-05-18T14:17:48.3160640Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:17:48.3161301Z TIC_DEPLOY_KEY: 2021-05-18T14:17:48.3162169Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:17:48.3163562Z GITHUB_PAT: *** 2021-05-18T14:17:48.3164423Z COVERALLS_TOKEN: *** 2021-05-18T14:17:48.3165117Z continue-on-error: true 2021-05-18T14:17:48.3165599Z VDIFFR_RUN_TESTS: 2021-05-18T14:17:48.3166109Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:17:48.3166812Z TZ: UTC 2021-05-18T14:17:48.3167225Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:17:48.3167679Z NOT_CRAN: true 2021-05-18T14:17:48.3168096Z ##[endgroup] 2021-05-18T14:17:48.5203445Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:17:48.5205019Z (as ‘lib’ is unspecified) 2021-05-18T14:18:07.4309653Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-18T14:18:07.7436004Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-18T14:18:07.7465743Z ================================================== 2021-05-18T14:18:07.7467121Z downloaded 145 KB 2021-05-18T14:18:07.7467475Z 2021-05-18T14:18:08.1347436Z * installing *source* package ‘remotes’ ... 2021-05-18T14:18:08.1397347Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-18T14:18:08.1398602Z ** using staged installation 2021-05-18T14:18:08.1621781Z ** R 2021-05-18T14:18:08.1862888Z ** inst 2021-05-18T14:18:08.1878351Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:18:10.8487821Z ** help 2021-05-18T14:18:10.9686226Z *** installing help indices 2021-05-18T14:18:11.0453652Z ** building package indices 2021-05-18T14:18:11.3478363Z ** installing vignettes 2021-05-18T14:18:11.3557881Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:18:11.5888259Z ** testing if installed package can be loaded from final location 2021-05-18T14:18:11.8689595Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:18:11.8714215Z * DONE (remotes) 2021-05-18T14:18:11.8849198Z 2021-05-18T14:18:11.8850424Z The downloaded source packages are in 2021-05-18T14:18:11.8852332Z ‘/tmp/RtmpWUe2sT/downloaded_packages’ 2021-05-18T14:18:35.3840939Z ##[group]Run actions/cache@v1 2021-05-18T14:18:35.3841418Z with: 2021-05-18T14:18:35.3841894Z path: /home/runner/work/_temp/Library 2021-05-18T14:18:35.3845023Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-d7348fe551a86346205cbe9fcf7b26999e2414c85a846edc3b114eee9ce77f8c 2021-05-18T14:18:35.3849291Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-18T14:18:35.3850650Z env: 2021-05-18T14:18:35.3851111Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:35.3851625Z TIC_DEPLOY_KEY: 2021-05-18T14:18:35.3852491Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:35.3854384Z GITHUB_PAT: *** 2021-05-18T14:18:35.3855262Z COVERALLS_TOKEN: *** 2021-05-18T14:18:35.3855792Z continue-on-error: true 2021-05-18T14:18:35.3856404Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:35.3857066Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:35.3857716Z TZ: UTC 2021-05-18T14:18:35.3858278Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:35.3858709Z NOT_CRAN: true 2021-05-18T14:18:35.3859119Z ##[endgroup] 2021-05-18T14:18:35.4400683Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-18T14:18:35.4498491Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-18T14:18:35.4499405Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-18T14:18:35.4500220Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-18T14:18:35.4500907Z sudo -s eval "$sysreqs" 2021-05-18T14:18:35.4555444Z shell: /usr/bin/bash -e {0} 2021-05-18T14:18:35.4555867Z env: 2021-05-18T14:18:35.4556356Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:18:35.4557039Z TIC_DEPLOY_KEY: 2021-05-18T14:18:35.4557893Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:18:35.4559330Z GITHUB_PAT: *** 2021-05-18T14:18:35.4560200Z COVERALLS_TOKEN: *** 2021-05-18T14:18:35.4560718Z continue-on-error: true 2021-05-18T14:18:35.4561234Z VDIFFR_RUN_TESTS: 2021-05-18T14:18:35.4561747Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:18:35.4562238Z TZ: UTC 2021-05-18T14:18:35.4562676Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:18:35.4563129Z NOT_CRAN: true 2021-05-18T14:18:35.4563627Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-18T14:18:35.4564151Z ##[endgroup] 2021-05-18T14:18:35.7094686Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:18:36.2472268Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-18T14:18:55.4929060Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-18T14:18:55.4930519Z crayon (NA -> 1.4.1) [CRAN] 2021-05-18T14:18:55.4931652Z R6 (NA -> 2.5.0) [CRAN] 2021-05-18T14:18:55.4932693Z desc (NA -> 1.3.0) [CRAN] 2021-05-18T14:18:55.4936229Z debugme (NA -> 1.1.0) [CRAN] 2021-05-18T14:18:55.4957309Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-18T14:18:55.4970798Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:18:55.4972246Z (as ‘lib’ is unspecified) 2021-05-18T14:19:13.7124958Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-18T14:19:14.1084554Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-18T14:19:14.1087983Z ================================================== 2021-05-18T14:19:14.1089204Z downloaded 60 KB 2021-05-18T14:19:14.1089797Z 2021-05-18T14:19:14.1123974Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-18T14:19:14.3709617Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-18T14:19:14.3712946Z ================================================== 2021-05-18T14:19:14.3717156Z downloaded 34 KB 2021-05-18T14:19:14.3717483Z 2021-05-18T14:19:14.3750913Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-18T14:19:14.6181483Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-18T14:19:14.6189264Z ================================================== 2021-05-18T14:19:14.6189809Z downloaded 62 KB 2021-05-18T14:19:14.6190125Z 2021-05-18T14:19:14.6233258Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-18T14:19:14.8642849Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-18T14:19:14.8681576Z ================================================== 2021-05-18T14:19:14.8682457Z downloaded 285 KB 2021-05-18T14:19:14.8682933Z 2021-05-18T14:19:14.8719205Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-18T14:19:15.1200397Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-18T14:19:15.1301137Z ================================================== 2021-05-18T14:19:15.1302070Z downloaded 973 KB 2021-05-18T14:19:15.1302614Z 2021-05-18T14:19:15.4502933Z * installing *source* package ‘rprojroot’ ... 2021-05-18T14:19:15.4528975Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:15.4530181Z ** using staged installation 2021-05-18T14:19:15.4699623Z ** R 2021-05-18T14:19:15.4756649Z ** inst 2021-05-18T14:19:15.4768778Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:16.1132697Z ** help 2021-05-18T14:19:16.1435281Z *** installing help indices 2021-05-18T14:19:16.1768764Z *** copying figures 2021-05-18T14:19:16.1774182Z ** building package indices 2021-05-18T14:19:16.4327996Z ** installing vignettes 2021-05-18T14:19:16.4410878Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:16.6511952Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:16.8733531Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:16.8765632Z * DONE (rprojroot) 2021-05-18T14:19:17.1755223Z * installing *source* package ‘crayon’ ... 2021-05-18T14:19:17.1779160Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:17.1783954Z ** using staged installation 2021-05-18T14:19:17.1981967Z ** R 2021-05-18T14:19:17.2099348Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:18.3799493Z ** help 2021-05-18T14:19:18.4478587Z *** installing help indices 2021-05-18T14:19:18.4980791Z ** building package indices 2021-05-18T14:19:18.7779748Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:19.7569383Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:19.7571261Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:19.7572076Z * DONE (crayon) 2021-05-18T14:19:19.7573573Z * installing *source* package ‘R6’ ... 2021-05-18T14:19:19.7574636Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:19.7575380Z ** using staged installation 2021-05-18T14:19:19.7575859Z ** R 2021-05-18T14:19:19.7576688Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:20.2596772Z ** help 2021-05-18T14:19:20.2851557Z *** installing help indices 2021-05-18T14:19:20.3093727Z *** copying figures 2021-05-18T14:19:20.3098456Z ** building package indices 2021-05-18T14:19:20.5665356Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:20.7936030Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:21.0231022Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:21.0239336Z * DONE (R6) 2021-05-18T14:19:21.4219986Z * installing *source* package ‘desc’ ... 2021-05-18T14:19:21.4278799Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:21.4281131Z ** using staged installation 2021-05-18T14:19:21.4470791Z ** R 2021-05-18T14:19:21.4634466Z ** inst 2021-05-18T14:19:21.4654207Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:23.7004525Z ** help 2021-05-18T14:19:23.8679471Z *** installing help indices 2021-05-18T14:19:23.9834551Z ** building package indices 2021-05-18T14:19:24.3181103Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:24.5557645Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:24.8407579Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:24.8426618Z * DONE (desc) 2021-05-18T14:19:25.1893551Z * installing *source* package ‘debugme’ ... 2021-05-18T14:19:25.1930459Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-18T14:19:25.1931737Z ** using staged installation 2021-05-18T14:19:25.2060909Z ** R 2021-05-18T14:19:25.2099724Z ** inst 2021-05-18T14:19:25.2125303Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:25.6484192Z ** help 2021-05-18T14:19:25.6673652Z *** installing help indices 2021-05-18T14:19:25.6924099Z ** building package indices 2021-05-18T14:19:25.9286985Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:26.1776387Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:26.4305762Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:26.4307408Z * DONE (debugme) 2021-05-18T14:19:26.4359114Z 2021-05-18T14:19:26.4360234Z The downloaded source packages are in 2021-05-18T14:19:26.4361925Z ‘/tmp/RtmpginDwK/downloaded_packages’ 2021-05-18T14:19:26.4374479Z Running `R CMD build`... 2021-05-18T14:19:26.7339974Z * checking for file ‘/tmp/RtmpginDwK/remotes6a582c285da9/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-18T14:19:26.7342176Z * preparing ‘sysreqs’: 2021-05-18T14:19:26.7343638Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:19:26.7346552Z * checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:19:26.7347969Z * checking for empty or unneeded directories 2021-05-18T14:19:26.7349138Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:19:26.7350281Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-18T14:19:26.7352660Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:19:26.7353843Z (as ‘lib’ is unspecified) 2021-05-18T14:19:26.9955176Z * installing *source* package ‘sysreqs’ ... 2021-05-18T14:19:26.9957697Z ** using staged installation 2021-05-18T14:19:27.0130177Z ** R 2021-05-18T14:19:27.0172491Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:19:27.4995270Z ** help 2021-05-18T14:19:27.5242972Z *** installing help indices 2021-05-18T14:19:27.5448745Z ** building package indices 2021-05-18T14:19:27.7865572Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:19:28.0411144Z ** testing if installed package can be loaded from final location 2021-05-18T14:19:28.2887787Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:19:28.2895633Z * DONE (sysreqs) 2021-05-18T14:19:48.7284830Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-18T14:19:48.7287425Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-18T14:19:48.7301537Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-18T14:19:48.7360767Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-18T14:19:48.8165200Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-18T14:19:48.8615340Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-18T14:19:48.8773321Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-18T14:19:49.0046412Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-18T14:19:49.0109187Z Hit:9 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-18T14:19:49.0292605Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [777 kB] 2021-05-18T14:19:49.1605739Z Hit:11 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-18T14:19:50.0036112Z Fetched 1975 kB in 1s (1662 kB/s) 2021-05-18T14:19:50.9614642Z Reading package lists... 2021-05-18T14:19:51.0496238Z Reading package lists... 2021-05-18T14:19:51.2342820Z Building dependency tree... 2021-05-18T14:19:51.2371245Z Reading state information... 2021-05-18T14:19:51.4105960Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-18T14:19:51.4107295Z Suggested packages: 2021-05-18T14:19:51.4108633Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-18T14:19:51.4656976Z The following NEW packages will be installed: 2021-05-18T14:19:51.4661041Z libcurl4-openssl-dev 2021-05-18T14:19:51.4908458Z 0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded. 2021-05-18T14:19:51.4909912Z Need to get 321 kB of archives. 2021-05-18T14:19:51.4910728Z After this operation, 1539 kB of additional disk space will be used. 2021-05-18T14:19:51.4912967Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-18T14:19:52.0388739Z Fetched 321 kB in 0s (12.1 MB/s) 2021-05-18T14:19:52.0798131Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-18T14:19:52.0902112Z (Reading database ... 2021-05-18T14:19:52.0903834Z (Reading database ... 5% 2021-05-18T14:19:52.0904435Z (Reading database ... 10% 2021-05-18T14:19:52.0904987Z (Reading database ... 15% 2021-05-18T14:19:52.0905642Z (Reading database ... 20% 2021-05-18T14:19:52.0906168Z (Reading database ... 25% 2021-05-18T14:19:52.0906707Z (Reading database ... 30% 2021-05-18T14:19:52.0907247Z (Reading database ... 35% 2021-05-18T14:19:52.0907772Z (Reading database ... 40% 2021-05-18T14:19:52.0908319Z (Reading database ... 45% 2021-05-18T14:19:52.0909040Z (Reading database ... 50% 2021-05-18T14:19:52.0959880Z (Reading database ... 55% 2021-05-18T14:19:52.1017271Z (Reading database ... 60% 2021-05-18T14:19:52.1069986Z (Reading database ... 65% 2021-05-18T14:19:52.1309769Z (Reading database ... 70% 2021-05-18T14:19:52.1350630Z (Reading database ... 75% 2021-05-18T14:19:52.1729411Z (Reading database ... 80% 2021-05-18T14:19:52.1848308Z (Reading database ... 85% 2021-05-18T14:19:52.2315379Z (Reading database ... 90% 2021-05-18T14:19:52.2410049Z (Reading database ... 95% 2021-05-18T14:19:52.2410648Z (Reading database ... 100% 2021-05-18T14:19:52.2411477Z (Reading database ... 285139 files and directories currently installed.) 2021-05-18T14:19:52.2587967Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-18T14:19:52.2611486Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-18T14:19:52.3719765Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-18T14:19:52.3802027Z Processing triggers for man-db (2.9.1-1) ... 2021-05-18T14:19:58.9212249Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-18T14:19:58.9213077Z remotes::install_github("ropensci/tic") 2021-05-18T14:19:58.9213801Z remotes::install_github("muschellij2/ghtravis") 2021-05-18T14:19:58.9215532Z remotes::install_github("muschellij2/aghast") 2021-05-18T14:19:58.9216225Z remotes::install_cran("covr") 2021-05-18T14:19:58.9224181Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:19:58.9224654Z env: 2021-05-18T14:19:58.9225170Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:19:58.9225672Z TIC_DEPLOY_KEY: 2021-05-18T14:19:58.9226552Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:19:58.9228542Z GITHUB_PAT: *** 2021-05-18T14:19:58.9229549Z COVERALLS_TOKEN: *** 2021-05-18T14:19:58.9230160Z continue-on-error: true 2021-05-18T14:19:58.9230664Z VDIFFR_RUN_TESTS: 2021-05-18T14:19:58.9231198Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:19:58.9231737Z TZ: UTC 2021-05-18T14:19:58.9232164Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:19:58.9232605Z NOT_CRAN: true 2021-05-18T14:19:58.9233026Z ##[endgroup] 2021-05-18T14:19:59.1556561Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:19:59.7246663Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-18T14:20:19.4989674Z rlang (NA -> 0.4.11) [CRAN] 2021-05-18T14:20:19.4991294Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-18T14:20:19.4992436Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-18T14:20:19.4993474Z sys (NA -> 3.4 ) [CRAN] 2021-05-18T14:20:19.4994511Z askpass (NA -> 1.1 ) [CRAN] 2021-05-18T14:20:19.4995593Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-18T14:20:19.4997323Z mime (NA -> 0.10 ) [CRAN] 2021-05-18T14:20:19.4998424Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-18T14:20:19.4999506Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-18T14:20:19.5000555Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-18T14:20:19.5001563Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-18T14:20:19.5002686Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-18T14:20:19.5003739Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-18T14:20:19.5004746Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-18T14:20:19.5005812Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-18T14:20:19.5006910Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-18T14:20:19.5007973Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-18T14:20:19.5009236Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-18T14:20:19.5010289Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-18T14:20:19.5011323Z whisker (NA -> 0.4 ) [CRAN] 2021-05-18T14:20:19.5013046Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-18T14:20:19.5014316Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-18T14:20:19.5015243Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-18T14:20:19.5016153Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-18T14:20:19.5017027Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-18T14:20:19.5017879Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-18T14:20:19.5018756Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-18T14:20:19.5020173Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-18T14:20:19.5021092Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-18T14:20:19.5022007Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-18T14:20:19.5022902Z git2r (NA -> 0.28.0) [CRAN] 2021-05-18T14:20:19.5092663Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-18T14:20:19.5120714Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:20:19.5121950Z (as ‘lib’ is unspecified) 2021-05-18T14:20:38.0512614Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-18T14:20:38.2906941Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-18T14:20:38.2975295Z ================================================== 2021-05-18T14:20:38.2976263Z downloaded 839 KB 2021-05-18T14:20:38.2977192Z 2021-05-18T14:20:38.3012626Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-18T14:20:38.5402174Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-18T14:20:38.5433089Z ================================================== 2021-05-18T14:20:38.5433882Z downloaded 258 KB 2021-05-18T14:20:38.5434206Z 2021-05-18T14:20:38.5475864Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-18T14:20:38.9208751Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-18T14:20:38.9221633Z ================================================== 2021-05-18T14:20:38.9222204Z downloaded 97 KB 2021-05-18T14:20:38.9222524Z 2021-05-18T14:20:38.9264010Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-18T14:20:39.0857345Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-18T14:20:39.0859042Z ================================================== 2021-05-18T14:20:39.0860215Z downloaded 19 KB 2021-05-18T14:20:39.0860539Z 2021-05-18T14:20:39.0898528Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-18T14:20:39.3318088Z Content type 'application/x-tar' length 5688 bytes 2021-05-18T14:20:39.3319326Z ================================================== 2021-05-18T14:20:39.3320190Z downloaded 5688 bytes 2021-05-18T14:20:39.3320586Z 2021-05-18T14:20:39.3358080Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-18T14:20:39.6087921Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-18T14:20:39.7371149Z ================================================== 2021-05-18T14:20:39.7371793Z downloaded 1.3 MB 2021-05-18T14:20:39.7372112Z 2021-05-18T14:20:39.7411461Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-18T14:20:39.9805166Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-18T14:20:39.9808842Z ================================================== 2021-05-18T14:20:39.9809332Z downloaded 12 KB 2021-05-18T14:20:39.9809624Z 2021-05-18T14:20:39.9852851Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-18T14:20:40.2286683Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-18T14:20:40.2387508Z ================================================== 2021-05-18T14:20:40.2409835Z downloaded 779 KB 2021-05-18T14:20:40.2410186Z 2021-05-18T14:20:40.2434341Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-18T14:20:41.2815056Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-18T14:20:41.2816790Z ================================================== 2021-05-18T14:20:41.2817527Z downloaded 412 KB 2021-05-18T14:20:41.2818425Z 2021-05-18T14:20:41.2820307Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-18T14:20:41.2821717Z Content type 'application/x-tar' length 3475 bytes 2021-05-18T14:20:41.2822386Z ================================================== 2021-05-18T14:20:41.2822883Z downloaded 3475 bytes 2021-05-18T14:20:41.2823238Z 2021-05-18T14:20:41.2824608Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-18T14:20:41.2826057Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-18T14:20:41.2828512Z ================================================== 2021-05-18T14:20:41.2829048Z downloaded 156 KB 2021-05-18T14:20:41.2829359Z 2021-05-18T14:20:41.2831713Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-18T14:20:41.2833366Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-18T14:20:41.2834304Z ================================================== 2021-05-18T14:20:41.2835091Z downloaded 60 KB 2021-05-18T14:20:41.2835437Z 2021-05-18T14:20:41.2836887Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-18T14:20:41.4802854Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-18T14:20:41.4821397Z ================================================== 2021-05-18T14:20:41.4822446Z downloaded 154 KB 2021-05-18T14:20:41.4823071Z 2021-05-18T14:20:41.4860803Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-18T14:20:41.7461659Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-18T14:20:41.7474418Z ================================================== 2021-05-18T14:20:41.7476246Z downloaded 110 KB 2021-05-18T14:20:41.7476983Z 2021-05-18T14:20:41.7514809Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-18T14:20:41.8925864Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-18T14:20:41.8958156Z ================================================== 2021-05-18T14:20:41.8958731Z downloaded 107 KB 2021-05-18T14:20:41.8959052Z 2021-05-18T14:20:41.9001269Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-18T14:20:42.1463748Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-18T14:20:42.1480862Z ================================================== 2021-05-18T14:20:42.1481407Z downloaded 225 KB 2021-05-18T14:20:42.1481722Z 2021-05-18T14:20:42.1526089Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-18T14:20:42.5223900Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-18T14:20:42.5227203Z ================================================== 2021-05-18T14:20:42.5227762Z downloaded 43 KB 2021-05-18T14:20:42.5228085Z 2021-05-18T14:20:42.5272825Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-18T14:20:42.7705447Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-18T14:20:42.7726480Z ================================================== 2021-05-18T14:20:42.7727067Z downloaded 90 KB 2021-05-18T14:20:42.7727389Z 2021-05-18T14:20:42.7885784Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-18T14:20:43.0292708Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-18T14:20:43.0309553Z ================================================== 2021-05-18T14:20:43.0310116Z downloaded 92 KB 2021-05-18T14:20:43.0310418Z 2021-05-18T14:20:43.0348275Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-18T14:20:43.2804417Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-18T14:20:43.2808711Z ================================================== 2021-05-18T14:20:43.2809258Z downloaded 28 KB 2021-05-18T14:20:43.2809570Z 2021-05-18T14:20:43.2849715Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-18T14:20:43.5304948Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-18T14:20:43.5306303Z ================================================== 2021-05-18T14:20:43.5307209Z downloaded 12 KB 2021-05-18T14:20:43.5307561Z 2021-05-18T14:20:43.5344632Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-18T14:20:43.7747973Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-18T14:20:43.7796968Z ================================================== 2021-05-18T14:20:43.7797880Z downloaded 364 KB 2021-05-18T14:20:43.7798445Z 2021-05-18T14:20:43.7839598Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-18T14:20:44.1587769Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-18T14:20:44.1588606Z ================================================== 2021-05-18T14:20:44.1589073Z downloaded 81 KB 2021-05-18T14:20:44.1589378Z 2021-05-18T14:20:44.1631957Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-18T14:20:44.4096434Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-18T14:20:44.4102082Z ================================================== 2021-05-18T14:20:44.4102568Z downloaded 44 KB 2021-05-18T14:20:44.4103193Z 2021-05-18T14:20:44.4139017Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-18T14:20:44.6548852Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-18T14:20:44.6557510Z ================================================== 2021-05-18T14:20:44.6558498Z downloaded 64 KB 2021-05-18T14:20:44.6559244Z 2021-05-18T14:20:44.6603242Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-18T14:20:44.9055580Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-18T14:20:44.9197545Z ================================================== 2021-05-18T14:20:44.9198524Z downloaded 781 KB 2021-05-18T14:20:44.9199078Z 2021-05-18T14:20:44.9244498Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-18T14:20:45.3003326Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-18T14:20:45.3011216Z ================================================== 2021-05-18T14:20:45.3012219Z downloaded 20 KB 2021-05-18T14:20:45.3012730Z 2021-05-18T14:20:45.3051297Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-18T14:20:45.5465909Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-18T14:20:45.5470230Z ================================================== 2021-05-18T14:20:45.5470775Z downloaded 24 KB 2021-05-18T14:20:45.5471090Z 2021-05-18T14:20:45.5509609Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-18T14:20:45.7903146Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-18T14:20:45.7941174Z ================================================== 2021-05-18T14:20:45.7941729Z downloaded 297 KB 2021-05-18T14:20:45.7942049Z 2021-05-18T14:20:45.7999501Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-18T14:20:45.9559542Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-18T14:20:45.9560352Z ================================================== 2021-05-18T14:20:45.9560836Z downloaded 17 KB 2021-05-18T14:20:45.9561151Z 2021-05-18T14:20:45.9602887Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-18T14:20:46.3353327Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-18T14:20:46.3515241Z ================================================== 2021-05-18T14:20:46.3515958Z downloaded 1.2 MB 2021-05-18T14:20:46.3516282Z 2021-05-18T14:20:47.0334077Z * installing *source* package ‘rlang’ ... 2021-05-18T14:20:47.0491181Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:47.0492567Z ** using staged installation 2021-05-18T14:20:47.0766609Z ** libs 2021-05-18T14:20:47.0849469Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-18T14:20:47.2209134Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-18T14:20:47.6221317Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-18T14:20:50.5139687Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-18T14:20:51.8237845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:20:51.8699661Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:51.9220827Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-18T14:20:51.9249717Z ** R 2021-05-18T14:20:51.9798919Z ** inst 2021-05-18T14:20:51.9810159Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:20:56.7315635Z ** help 2021-05-18T14:20:57.6381151Z *** installing help indices 2021-05-18T14:20:58.0356954Z *** copying figures 2021-05-18T14:20:58.0366400Z ** building package indices 2021-05-18T14:20:58.6643770Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:20:58.9133722Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:20:58.9786759Z ** testing if installed package can be loaded from final location 2021-05-18T14:20:59.3170935Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:20:59.3172389Z * DONE (rlang) 2021-05-18T14:20:59.6562564Z * installing *source* package ‘magrittr’ ... 2021-05-18T14:20:59.6593288Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-18T14:20:59.6595352Z ** using staged installation 2021-05-18T14:20:59.6755968Z ** libs 2021-05-18T14:20:59.6827748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-18T14:20:59.8442629Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:20:59.9138069Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:20:59.9411028Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-18T14:20:59.9412474Z ** R 2021-05-18T14:20:59.9454380Z ** inst 2021-05-18T14:20:59.9473787Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:00.2995802Z ** help 2021-05-18T14:21:00.3483619Z *** installing help indices 2021-05-18T14:21:00.3861993Z *** copying figures 2021-05-18T14:21:00.3867486Z ** building package indices 2021-05-18T14:21:00.6448957Z ** installing vignettes 2021-05-18T14:21:00.6517943Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:00.8967614Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:00.9257896Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:01.1569612Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:01.1581592Z * DONE (magrittr) 2021-05-18T14:21:01.4782101Z * installing *source* package ‘glue’ ... 2021-05-18T14:21:01.4805699Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:01.4807009Z ** using staged installation 2021-05-18T14:21:01.5050327Z ** libs 2021-05-18T14:21:01.5108262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-18T14:21:01.6647070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:01.7264783Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-18T14:21:01.8350331Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:01.8622064Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-18T14:21:01.8640660Z ** R 2021-05-18T14:21:01.8713829Z ** inst 2021-05-18T14:21:01.8729393Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:02.4976420Z ** help 2021-05-18T14:21:02.5339457Z *** installing help indices 2021-05-18T14:21:02.5718598Z *** copying figures 2021-05-18T14:21:02.5721796Z ** building package indices 2021-05-18T14:21:02.8249702Z ** installing vignettes 2021-05-18T14:21:02.8258345Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:03.1052776Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:03.1248100Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:03.4088540Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:03.4100017Z * DONE (glue) 2021-05-18T14:21:03.6772364Z * installing *source* package ‘sys’ ... 2021-05-18T14:21:03.6788327Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:03.6789273Z ** using staged installation 2021-05-18T14:21:03.7028652Z ** libs 2021-05-18T14:21:03.7081333Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-18T14:21:03.9637735Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:04.0213490Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:04.0468749Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-18T14:21:04.0485351Z ** R 2021-05-18T14:21:04.0531184Z ** inst 2021-05-18T14:21:04.0541387Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:04.4058883Z ** help 2021-05-18T14:21:04.4296433Z *** installing help indices 2021-05-18T14:21:04.4544803Z ** building package indices 2021-05-18T14:21:04.6953601Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:04.9135825Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:04.9340718Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:05.1530126Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:05.1537581Z * DONE (sys) 2021-05-18T14:21:05.4312472Z * installing *source* package ‘mime’ ... 2021-05-18T14:21:05.4325000Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:05.4326418Z ** using staged installation 2021-05-18T14:21:05.4489977Z ** libs 2021-05-18T14:21:05.4547130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:05.5106220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-18T14:21:05.5782217Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:05.6006006Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-18T14:21:05.6028251Z ** R 2021-05-18T14:21:05.6107224Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:06.0406463Z ** help 2021-05-18T14:21:06.0642973Z *** installing help indices 2021-05-18T14:21:06.0834455Z ** building package indices 2021-05-18T14:21:06.3299200Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:06.5553571Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:06.5782633Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:06.8086266Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:06.8092660Z * DONE (mime) 2021-05-18T14:21:07.2869249Z * installing *source* package ‘curl’ ... 2021-05-18T14:21:07.2965918Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:07.2967282Z ** using staged installation 2021-05-18T14:21:07.3070183Z Found pkg-config cflags and libs! 2021-05-18T14:21:07.4098799Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-18T14:21:07.4100222Z Using PKG_LIBS=-lcurl 2021-05-18T14:21:07.4731837Z ** libs 2021-05-18T14:21:07.4797778Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-18T14:21:07.4828709Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-18T14:21:07.5805504Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-18T14:21:07.7342374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-18T14:21:07.8548784Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-18T14:21:07.9250990Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-18T14:21:08.0563998Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-18T14:21:08.1454483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-18T14:21:08.2238013Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-18T14:21:08.6618058Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-18T14:21:08.7109740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:08.7885475Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-18T14:21:08.8737469Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-18T14:21:09.1054416Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-18T14:21:09.1722059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-18T14:21:09.2397104Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-18T14:21:09.2970537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-18T14:21:09.3575933Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-18T14:21:09.4293560Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:21:09.5878171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:21:09.6732637Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-18T14:21:09.6966547Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-18T14:21:09.7595847Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:09.7970997Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-18T14:21:09.7986410Z ** R 2021-05-18T14:21:09.8128885Z ** inst 2021-05-18T14:21:09.8167366Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:10.5235723Z ** help 2021-05-18T14:21:10.5784747Z *** installing help indices 2021-05-18T14:21:10.6225072Z ** building package indices 2021-05-18T14:21:10.8889843Z ** installing vignettes 2021-05-18T14:21:10.8995610Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:11.1278703Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:11.1487126Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:11.3888771Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:11.3898644Z * DONE (curl) 2021-05-18T14:21:11.8258776Z * installing *source* package ‘jsonlite’ ... 2021-05-18T14:21:11.8324423Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:11.8325813Z ** using staged installation 2021-05-18T14:21:11.8497865Z ** libs 2021-05-18T14:21:11.8561559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:21:11.9452697Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-18T14:21:12.0169774Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-18T14:21:12.7935476Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-18T14:21:12.7945525Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-18T14:21:12.7947928Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-18T14:21:12.7950643Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-18T14:21:12.7952941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-18T14:21:12.7955244Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-18T14:21:12.7959651Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-18T14:21:12.7961468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-18T14:21:12.8584795Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-18T14:21:12.9633685Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-18T14:21:13.0483399Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-18T14:21:13.1337918Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-18T14:21:13.2012740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-18T14:21:13.2683581Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-18T14:21:13.3243124Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-18T14:21:13.4067242Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-18T14:21:13.4677128Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-18T14:21:13.5351522Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-18T14:21:13.6112192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-18T14:21:13.6493844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-18T14:21:13.7130860Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-18T14:21:13.8436490Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-18T14:21:14.1503390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-18T14:21:14.5025398Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-18T14:21:14.7241546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-18T14:21:14.9004866Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-18T14:21:14.9102569Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:14.9515031Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-18T14:21:14.9535154Z ** R 2021-05-18T14:21:14.9824488Z ** inst 2021-05-18T14:21:14.9866088Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:16.3597263Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-18T14:21:16.3599552Z ** help 2021-05-18T14:21:16.3990340Z *** installing help indices 2021-05-18T14:21:16.4341622Z ** building package indices 2021-05-18T14:21:16.6751178Z ** installing vignettes 2021-05-18T14:21:16.6834839Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:16.9390156Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:16.9654075Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:17.2280467Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:17.2297704Z * DONE (jsonlite) 2021-05-18T14:21:17.4858059Z * installing *source* package ‘ini’ ... 2021-05-18T14:21:17.4869321Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:17.4870477Z ** using staged installation 2021-05-18T14:21:17.5004450Z ** R 2021-05-18T14:21:17.5041691Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:17.8112049Z ** help 2021-05-18T14:21:17.8264261Z *** installing help indices 2021-05-18T14:21:17.8535470Z ** building package indices 2021-05-18T14:21:18.0915173Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:18.3096812Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:18.5321413Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:18.5328079Z * DONE (ini) 2021-05-18T14:21:18.8364266Z * installing *source* package ‘gitcreds’ ... 2021-05-18T14:21:18.8389298Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:18.8390407Z ** using staged installation 2021-05-18T14:21:18.8530507Z ** R 2021-05-18T14:21:18.8603414Z ** inst 2021-05-18T14:21:18.8617579Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:19.5360578Z ** help 2021-05-18T14:21:19.5665786Z *** installing help indices 2021-05-18T14:21:19.5966185Z ** building package indices 2021-05-18T14:21:19.8462425Z ** installing vignettes 2021-05-18T14:21:19.8525837Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:20.0609671Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:20.2836696Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:20.2845134Z * DONE (gitcreds) 2021-05-18T14:21:20.6152958Z * installing *source* package ‘zip’ ... 2021-05-18T14:21:20.6181795Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:20.6183530Z ** using staged installation 2021-05-18T14:21:20.6322233Z ** libs 2021-05-18T14:21:20.6384882Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-18T14:21:24.3189579Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-18T14:21:27.7999553Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:27.8644333Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-18T14:21:31.1014340Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-18T14:21:31.2207629Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-18T14:21:31.3906236Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-18T14:21:31.4737774Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:31.5061106Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-18T14:21:31.5137652Z ** R 2021-05-18T14:21:31.5185521Z ** inst 2021-05-18T14:21:31.5199370Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:31.9791536Z ** help 2021-05-18T14:21:32.0040499Z *** installing help indices 2021-05-18T14:21:32.0326636Z ** building package indices 2021-05-18T14:21:32.2745261Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:32.7984695Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:32.7994166Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:32.7995698Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:32.7996600Z * DONE (zip) 2021-05-18T14:21:33.1500515Z * installing *source* package ‘rstudioapi’ ... 2021-05-18T14:21:33.1549059Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:33.1550413Z ** using staged installation 2021-05-18T14:21:33.1705983Z ** R 2021-05-18T14:21:33.1836806Z ** inst 2021-05-18T14:21:33.1860140Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:33.9006488Z ** help 2021-05-18T14:21:34.1084981Z *** installing help indices 2021-05-18T14:21:34.2664472Z *** copying figures 2021-05-18T14:21:34.2668535Z ** building package indices 2021-05-18T14:21:34.6600669Z ** installing vignettes 2021-05-18T14:21:34.6695926Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:34.8904694Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:35.1156901Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:35.1170585Z * DONE (rstudioapi) 2021-05-18T14:21:35.4123130Z * installing *source* package ‘fastmap’ ... 2021-05-18T14:21:35.4144467Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:35.4145617Z ** using staged installation 2021-05-18T14:21:35.4431371Z ** libs 2021-05-18T14:21:35.4490369Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-18T14:21:37.9908645Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:38.0477244Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:38.1179733Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-18T14:21:38.1203219Z ** R 2021-05-18T14:21:38.1260227Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:38.7056259Z ** help 2021-05-18T14:21:38.7282338Z *** installing help indices 2021-05-18T14:21:38.7514635Z ** building package indices 2021-05-18T14:21:38.9939195Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:39.2216030Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:39.2432174Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:39.4655531Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:39.4664001Z * DONE (fastmap) 2021-05-18T14:21:39.7804716Z * installing *source* package ‘yaml’ ... 2021-05-18T14:21:39.7834619Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:39.7835895Z ** using staged installation 2021-05-18T14:21:39.7971261Z ** libs 2021-05-18T14:21:39.8032371Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-18T14:21:40.2162917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-18T14:21:40.3708815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-18T14:21:41.5854037Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-18T14:21:41.8078623Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-18T14:21:41.9820595Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-18T14:21:42.4598852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-18T14:21:42.8279444Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-18T14:21:42.9550582Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-18T14:21:43.4849672Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-18T14:21:43.6225471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-18T14:21:45.3045985Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-18T14:21:45.3831479Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:45.4202466Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-18T14:21:45.4226280Z ** R 2021-05-18T14:21:45.4260633Z ** inst 2021-05-18T14:21:45.4277003Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:45.7352814Z ** help 2021-05-18T14:21:45.7594766Z *** installing help indices 2021-05-18T14:21:45.7893468Z ** building package indices 2021-05-18T14:21:46.0294548Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:46.2544040Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:46.2769809Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:46.5138848Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:46.5145890Z * DONE (yaml) 2021-05-18T14:21:46.8539473Z * installing *source* package ‘withr’ ... 2021-05-18T14:21:46.8570320Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:46.8571527Z ** using staged installation 2021-05-18T14:21:46.8774939Z ** R 2021-05-18T14:21:46.8920057Z ** inst 2021-05-18T14:21:46.8932995Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:47.7621722Z ** help 2021-05-18T14:21:47.8610143Z *** installing help indices 2021-05-18T14:21:47.9354914Z *** copying figures 2021-05-18T14:21:47.9358185Z ** building package indices 2021-05-18T14:21:48.2409888Z ** installing vignettes 2021-05-18T14:21:48.2465041Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:48.4744592Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:48.7040576Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:48.7050627Z * DONE (withr) 2021-05-18T14:21:48.9971371Z * installing *source* package ‘whisker’ ... 2021-05-18T14:21:48.9990580Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:48.9991822Z ** using staged installation 2021-05-18T14:21:49.0132120Z ** R 2021-05-18T14:21:49.0185808Z ** inst 2021-05-18T14:21:49.0207868Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:49.5584892Z ** help 2021-05-18T14:21:49.5886813Z *** installing help indices 2021-05-18T14:21:49.6194013Z ** building package indices 2021-05-18T14:21:49.8748051Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:50.1022270Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:50.3260398Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:50.3269674Z * DONE (whisker) 2021-05-18T14:21:50.6028902Z * installing *source* package ‘rappdirs’ ... 2021-05-18T14:21:50.6047788Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:50.6049780Z ** using staged installation 2021-05-18T14:21:50.6361828Z ** libs 2021-05-18T14:21:50.6416376Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:21:50.6997102Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-18T14:21:50.7540913Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:21:50.7716559Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-18T14:21:50.7733631Z ** R 2021-05-18T14:21:50.7782208Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:21:51.1743700Z ** help 2021-05-18T14:21:51.2016812Z *** installing help indices 2021-05-18T14:21:51.2271600Z ** building package indices 2021-05-18T14:21:51.4623059Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:21:51.6798313Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:21:51.7054844Z ** testing if installed package can be loaded from final location 2021-05-18T14:21:51.9276152Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:21:51.9277160Z * DONE (rappdirs) 2021-05-18T14:21:52.5494079Z * installing *source* package ‘fs’ ... 2021-05-18T14:21:52.5651696Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-18T14:21:52.5653364Z ** using staged installation 2021-05-18T14:21:52.5865184Z ** libs 2021-05-18T14:21:52.5934739Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-18T14:21:53.3230677Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-18T14:21:53.8646038Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-18T14:21:54.3839647Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-18T14:21:54.4918756Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-18T14:21:54.8940181Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-18T14:21:55.2981736Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-18T14:21:55.4112771Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-18T14:21:55.9996513Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-18T14:21:56.3742346Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-18T14:21:56.4943145Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-18T14:21:56.9286698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-18T14:21:57.1086218Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-18T14:21:57.1657997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-18T14:21:57.2051824Z (cd libuv-1.38.1 \ 2021-05-18T14:21:57.2054347Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-18T14:22:02.4058706Z make --directory=libuv-1.38.1 \ 2021-05-18T14:22:02.4059992Z HAVE_DTRACE=0 2021-05-18T14:22:02.4269286Z make[1]: Entering directory '/tmp/RtmpD8BZpM/R.INSTALL79e5247b9bce/fs/src/libuv-1.38.1' 2021-05-18T14:22:02.4377838Z CC src/libuv_la-fs-poll.lo 2021-05-18T14:22:03.2060155Z CC src/libuv_la-idna.lo 2021-05-18T14:22:04.0183014Z CC src/libuv_la-inet.lo 2021-05-18T14:22:04.8285552Z CC src/libuv_la-random.lo 2021-05-18T14:22:05.4863618Z CC src/libuv_la-strscpy.lo 2021-05-18T14:22:06.0781396Z CC src/libuv_la-threadpool.lo 2021-05-18T14:22:06.8993765Z CC src/libuv_la-timer.lo 2021-05-18T14:22:07.6626473Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-18T14:22:08.3359233Z CC src/libuv_la-uv-common.lo 2021-05-18T14:22:09.7185677Z CC src/libuv_la-version.lo 2021-05-18T14:22:10.3027199Z CC src/unix/libuv_la-async.lo 2021-05-18T14:22:11.0791778Z CC src/unix/libuv_la-core.lo 2021-05-18T14:22:12.5490201Z CC src/unix/libuv_la-dl.lo 2021-05-18T14:22:13.2197242Z CC src/unix/libuv_la-fs.lo 2021-05-18T14:22:15.2139983Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-18T14:22:15.9706852Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-18T14:22:16.6693562Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-18T14:22:17.4419638Z CC src/unix/libuv_la-loop.lo 2021-05-18T14:22:18.1816956Z CC src/unix/libuv_la-pipe.lo 2021-05-18T14:22:18.9596655Z CC src/unix/libuv_la-poll.lo 2021-05-18T14:22:19.6646424Z CC src/unix/libuv_la-process.lo 2021-05-18T14:22:20.6576090Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-18T14:22:21.3429131Z CC src/unix/libuv_la-signal.lo 2021-05-18T14:22:22.4557401Z CC src/unix/libuv_la-stream.lo 2021-05-18T14:22:23.7989493Z CC src/unix/libuv_la-tcp.lo 2021-05-18T14:22:24.6264900Z CC src/unix/libuv_la-thread.lo 2021-05-18T14:22:25.6115010Z CC src/unix/libuv_la-tty.lo 2021-05-18T14:22:26.4037725Z CC src/unix/libuv_la-udp.lo 2021-05-18T14:22:27.7136330Z CC src/unix/libuv_la-linux-core.lo 2021-05-18T14:22:29.0310967Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-18T14:22:30.1051525Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-18T14:22:30.6726612Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-18T14:22:31.3204215Z CC src/unix/libuv_la-proctitle.lo 2021-05-18T14:22:32.0085851Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-18T14:22:32.6253332Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-18T14:22:33.2729101Z CCLD libuv.la 2021-05-18T14:22:33.5285255Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-18T14:22:33.5725473Z make[1]: Leaving directory '/tmp/RtmpD8BZpM/R.INSTALL79e5247b9bce/fs/src/libuv-1.38.1' 2021-05-18T14:22:33.5755723Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:33.6773398Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-18T14:22:33.6810441Z ** R 2021-05-18T14:22:33.6944514Z ** inst 2021-05-18T14:22:33.6960440Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:35.1095918Z ** help 2021-05-18T14:22:35.2002908Z *** installing help indices 2021-05-18T14:22:35.2673923Z ** building package indices 2021-05-18T14:22:35.5669567Z ** installing vignettes 2021-05-18T14:22:35.5790042Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:35.8836581Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:35.9104118Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:36.2587399Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:36.2589314Z * DONE (fs) 2021-05-18T14:22:36.5706145Z * installing *source* package ‘clipr’ ... 2021-05-18T14:22:36.5722357Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:36.5723707Z ** using staged installation 2021-05-18T14:22:36.6002034Z ** R 2021-05-18T14:22:36.6061536Z ** inst 2021-05-18T14:22:36.6073990Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:37.0250031Z ** help 2021-05-18T14:22:37.0478050Z *** installing help indices 2021-05-18T14:22:37.0727093Z ** building package indices 2021-05-18T14:22:37.3222314Z ** installing vignettes 2021-05-18T14:22:37.3284502Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:37.5460828Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:37.7672689Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:37.7681048Z * DONE (clipr) 2021-05-18T14:22:38.7637348Z * installing *source* package ‘git2r’ ... 2021-05-18T14:22:38.8023832Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:38.8025338Z ** using staged installation 2021-05-18T14:22:39.0279385Z checking build system type... x86_64-unknown-linux-gnu 2021-05-18T14:22:39.0281331Z checking host system type... x86_64-unknown-linux-gnu 2021-05-18T14:22:39.0290309Z checking for gcc... gcc 2021-05-18T14:22:39.0965739Z checking whether the C compiler works... yes 2021-05-18T14:22:39.0967292Z checking for C compiler default output file name... a.out 2021-05-18T14:22:39.1400390Z checking for suffix of executables... 2021-05-18T14:22:39.1943933Z checking whether we are cross compiling... no 2021-05-18T14:22:39.2213271Z checking for suffix of object files... o 2021-05-18T14:22:39.2511561Z checking whether we are using the GNU C compiler... yes 2021-05-18T14:22:39.2824123Z checking whether gcc accepts -g... yes 2021-05-18T14:22:39.3301161Z checking for gcc option to accept ISO C89... none needed 2021-05-18T14:22:39.3310428Z checking for pkg-config... /usr/bin/pkg-config 2021-05-18T14:22:39.3325914Z checking pkg-config is at least version 0.9.0... yes 2021-05-18T14:22:39.3407674Z Found pkg-config cflags and libs! 2021-05-18T14:22:39.4481401Z checking whether the libgit2 version will work in git2r... yes 2021-05-18T14:22:39.6082012Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-18T14:22:39.7570839Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-18T14:22:39.9178757Z checking whether the libgit2 function git_error_last is available... yes 2021-05-18T14:22:40.0522753Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-18T14:22:40.0525010Z ----- Results of the git2r package configure ----- 2021-05-18T14:22:40.0525813Z 2021-05-18T14:22:40.0527182Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-18T14:22:40.0528629Z PKG_LIBS: -lgit2 2021-05-18T14:22:40.0529276Z 2021-05-18T14:22:40.0530723Z -------------------------------------------------- 2021-05-18T14:22:40.0766519Z configure: creating ./config.status 2021-05-18T14:22:40.1616770Z config.status: creating src/Makevars 2021-05-18T14:22:40.2326331Z ** libs 2021-05-18T14:22:40.2399004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-18T14:22:40.3292742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-18T14:22:40.3913103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-18T14:22:40.5811938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-18T14:22:40.6966183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-18T14:22:40.8557711Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-18T14:22:41.1437258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-18T14:22:41.2549170Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-18T14:22:41.3724229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-18T14:22:41.5549106Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-18T14:22:41.7610679Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-18T14:22:41.8818573Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-18T14:22:42.2117586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-18T14:22:42.2912920Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-18T14:22:42.3911599Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-18T14:22:42.5034626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-18T14:22:42.6032324Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-18T14:22:42.8270314Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-18T14:22:42.9932206Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-18T14:22:43.1048602Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-18T14:22:43.3051724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-18T14:22:43.3845477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-18T14:22:43.4835132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-18T14:22:43.6143179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-18T14:22:43.7169908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-18T14:22:43.9380592Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-18T14:22:44.1275220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-18T14:22:44.2339093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-18T14:22:44.3445117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-18T14:22:44.5721595Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-18T14:22:44.6734044Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-18T14:22:44.8338269Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-18T14:22:45.0316543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-18T14:22:45.1989805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-18T14:22:45.2806790Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-18T14:22:45.4294751Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:45.4811191Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-18T14:22:45.4812596Z ** R 2021-05-18T14:22:45.5061463Z ** inst 2021-05-18T14:22:45.5075318Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:46.9145042Z ** help 2021-05-18T14:22:47.2166853Z *** installing help indices 2021-05-18T14:22:47.4692840Z ** building package indices 2021-05-18T14:22:47.9164222Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:48.1449930Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:48.1675707Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:48.4151353Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:48.4163182Z * DONE (git2r) 2021-05-18T14:22:48.6835788Z * installing *source* package ‘askpass’ ... 2021-05-18T14:22:48.6847709Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:48.6850956Z ** using staged installation 2021-05-18T14:22:48.7028181Z ** libs 2021-05-18T14:22:48.7086906Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-18T14:22:48.7817578Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:48.8063009Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-18T14:22:48.8080292Z ** R 2021-05-18T14:22:48.8117036Z ** inst 2021-05-18T14:22:48.8127291Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:49.1386962Z ** help 2021-05-18T14:22:49.1592871Z *** installing help indices 2021-05-18T14:22:49.1771998Z ** building package indices 2021-05-18T14:22:49.4100096Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:49.6441223Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:49.6661034Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:49.8850226Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:49.8857635Z * DONE (askpass) 2021-05-18T14:22:50.3498003Z * installing *source* package ‘cli’ ... 2021-05-18T14:22:50.3572179Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:50.3574631Z ** using staged installation 2021-05-18T14:22:50.3827626Z ** R 2021-05-18T14:22:50.4177718Z ** inst 2021-05-18T14:22:50.4194194Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:54.0821734Z ** help 2021-05-18T14:22:54.3423020Z *** installing help indices 2021-05-18T14:22:54.5252683Z *** copying figures 2021-05-18T14:22:54.5255339Z ** building package indices 2021-05-18T14:22:54.9263684Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:55.2121321Z ** testing if installed package can be loaded from final location 2021-05-18T14:22:55.5412260Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:22:55.5441082Z * DONE (cli) 2021-05-18T14:22:55.9646633Z * installing *source* package ‘purrr’ ... 2021-05-18T14:22:55.9706125Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-18T14:22:55.9707300Z ** using staged installation 2021-05-18T14:22:55.9904767Z ** libs 2021-05-18T14:22:55.9959827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-18T14:22:56.0437589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-18T14:22:56.1549663Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-18T14:22:56.2765147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-18T14:22:56.4289950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:22:56.4934282Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-18T14:22:56.6428148Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-18T14:22:56.8170974Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-18T14:22:56.9330445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:22:57.0017702Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:22:57.0309167Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-18T14:22:57.0326816Z ** R 2021-05-18T14:22:57.0540425Z ** inst 2021-05-18T14:22:57.0552526Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:22:58.7872386Z ** help 2021-05-18T14:22:58.9935467Z *** installing help indices 2021-05-18T14:22:59.1340196Z *** copying figures 2021-05-18T14:22:59.1347016Z ** building package indices 2021-05-18T14:22:59.4769445Z ** installing vignettes 2021-05-18T14:22:59.4855096Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:22:59.7465620Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:22:59.7690683Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:00.0462863Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:00.0477157Z * DONE (purrr) 2021-05-18T14:23:00.3790644Z * installing *source* package ‘lifecycle’ ... 2021-05-18T14:23:00.3850221Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:00.3851285Z ** using staged installation 2021-05-18T14:23:00.4013309Z ** R 2021-05-18T14:23:00.4072297Z ** inst 2021-05-18T14:23:00.4088687Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:00.9874357Z ** help 2021-05-18T14:23:01.0259680Z *** installing help indices 2021-05-18T14:23:01.0572510Z *** copying figures 2021-05-18T14:23:01.0579038Z ** building package indices 2021-05-18T14:23:01.2992506Z ** installing vignettes 2021-05-18T14:23:01.3058822Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:01.5622162Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:01.8330428Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:01.8331915Z * DONE (lifecycle) 2021-05-18T14:23:02.1045137Z * installing *source* package ‘cachem’ ... 2021-05-18T14:23:02.1061031Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:02.1063638Z ** using staged installation 2021-05-18T14:23:02.1230598Z ** libs 2021-05-18T14:23:02.1292970Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-18T14:23:02.1980426Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:02.2530519Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:02.2832911Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-18T14:23:02.2849461Z ** R 2021-05-18T14:23:02.2997592Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:03.0333769Z ** help 2021-05-18T14:23:03.0624894Z *** installing help indices 2021-05-18T14:23:03.0875615Z ** building package indices 2021-05-18T14:23:03.3304049Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:03.5818648Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:03.6117135Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:03.8798051Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:03.8807641Z * DONE (cachem) 2021-05-18T14:23:04.4980939Z * installing *source* package ‘openssl’ ... 2021-05-18T14:23:04.5136837Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:04.5139427Z ** using staged installation 2021-05-18T14:23:04.5325091Z Found pkg-config cflags and libs! 2021-05-18T14:23:04.6416222Z Using PKG_CFLAGS= 2021-05-18T14:23:04.9699958Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-18T14:23:04.9900935Z ** libs 2021-05-18T14:23:04.9968942Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-18T14:23:04.9997657Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-18T14:23:05.1116205Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:23:05.2160232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-18T14:23:05.3477810Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-18T14:23:05.5489326Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-18T14:23:05.6337121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-18T14:23:05.7569100Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-18T14:23:05.9302730Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-18T14:23:06.0100112Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-18T14:23:06.1424825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-18T14:23:06.2314454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-18T14:23:06.3714290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-18T14:23:06.5344217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-18T14:23:06.6495419Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-18T14:23:06.9038471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-18T14:23:06.9747874Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-18T14:23:07.0303461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-18T14:23:07.1952522Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-18T14:23:07.3894815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-18T14:23:07.5451335Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-18T14:23:07.6032775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-18T14:23:07.7326327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-18T14:23:07.8829097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-18T14:23:08.0707501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-18T14:23:08.2264941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-18T14:23:08.3894685Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-18T14:23:08.5492418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-18T14:23:08.6432815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-18T14:23:08.8716146Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-18T14:23:08.8783616Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:08.9531429Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-18T14:23:08.9533028Z ** R 2021-05-18T14:23:08.9652320Z ** inst 2021-05-18T14:23:08.9735559Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:10.8381265Z ** help 2021-05-18T14:23:10.8390639Z *** installing help indices 2021-05-18T14:23:10.8391640Z ** building package indices 2021-05-18T14:23:10.8392362Z ** installing vignettes 2021-05-18T14:23:10.8393343Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:10.9761530Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:10.9997989Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:11.2598765Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:11.2613364Z * DONE (openssl) 2021-05-18T14:23:11.5424569Z * installing *source* package ‘memoise’ ... 2021-05-18T14:23:11.5439614Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:11.5441001Z ** using staged installation 2021-05-18T14:23:11.5637136Z ** R 2021-05-18T14:23:11.5771712Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:12.1492793Z ** help 2021-05-18T14:23:12.1852568Z *** installing help indices 2021-05-18T14:23:12.2176693Z ** building package indices 2021-05-18T14:23:12.4778558Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:12.7164687Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:12.9763597Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:12.9784732Z * DONE (memoise) 2021-05-18T14:23:13.4102233Z * installing *source* package ‘httr’ ... 2021-05-18T14:23:13.4169953Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:13.4171054Z ** using staged installation 2021-05-18T14:23:13.4371762Z ** R 2021-05-18T14:23:13.4602320Z ** demo 2021-05-18T14:23:13.4623366Z ** inst 2021-05-18T14:23:13.4643775Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:17.2053024Z ** help 2021-05-18T14:23:17.3999631Z *** installing help indices 2021-05-18T14:23:17.5514991Z ** building package indices 2021-05-18T14:23:17.9209744Z ** installing vignettes 2021-05-18T14:23:17.9332332Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:18.1698221Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:18.4441376Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:18.4476102Z * DONE (httr) 2021-05-18T14:23:18.7392514Z * installing *source* package ‘credentials’ ... 2021-05-18T14:23:18.7412120Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:18.7413524Z ** using staged installation 2021-05-18T14:23:18.7593898Z ** R 2021-05-18T14:23:18.7648272Z ** inst 2021-05-18T14:23:18.7663235Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:19.3600119Z ** help 2021-05-18T14:23:19.3821220Z *** installing help indices 2021-05-18T14:23:19.4053009Z ** building package indices 2021-05-18T14:23:19.6499613Z ** installing vignettes 2021-05-18T14:23:19.6565828Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:20.0490040Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:20.3564641Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:20.3576944Z * DONE (credentials) 2021-05-18T14:23:20.6681948Z * installing *source* package ‘gh’ ... 2021-05-18T14:23:20.6706752Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:20.6709634Z ** using staged installation 2021-05-18T14:23:20.6905059Z ** R 2021-05-18T14:23:20.7005940Z ** inst 2021-05-18T14:23:20.7018872Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:22.2194415Z ** help 2021-05-18T14:23:22.2558455Z *** installing help indices 2021-05-18T14:23:22.2922717Z ** building package indices 2021-05-18T14:23:22.5492834Z ** installing vignettes 2021-05-18T14:23:22.5563356Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:22.8840634Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:23.2240825Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:23.2255003Z * DONE (gh) 2021-05-18T14:23:23.5660314Z * installing *source* package ‘gert’ ... 2021-05-18T14:23:23.5695072Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:23.5696309Z ** using staged installation 2021-05-18T14:23:23.5805900Z Found pkg-config cflags and libs! 2021-05-18T14:23:23.6854928Z Using PKG_CFLAGS= 2021-05-18T14:23:23.6856649Z Using PKG_LIBS=-lgit2 2021-05-18T14:23:23.7322204Z Configuration OK! 2021-05-18T14:23:23.7515524Z ** libs 2021-05-18T14:23:23.7597689Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-18T14:23:23.7627548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-18T14:23:24.0260031Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-18T14:23:24.3161426Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-18T14:23:24.5990872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-18T14:23:24.7079472Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-18T14:23:24.8178144Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-18T14:23:25.0097491Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:23:25.0853842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-18T14:23:25.2202401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-18T14:23:25.3604730Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-18T14:23:25.4684911Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-18T14:23:25.6117435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-18T14:23:25.7162154Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:23:25.8706791Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:23:25.9851916Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:23:26.0250935Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-18T14:23:26.0252327Z ** R 2021-05-18T14:23:26.0364059Z ** inst 2021-05-18T14:23:26.0377889Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:27.0367220Z ** help 2021-05-18T14:23:27.1128962Z *** installing help indices 2021-05-18T14:23:27.1721298Z ** building package indices 2021-05-18T14:23:27.4563562Z ** installing vignettes 2021-05-18T14:23:27.4681005Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:27.7553433Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:23:27.7814682Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:28.0675945Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:28.0687420Z * DONE (gert) 2021-05-18T14:23:28.5911624Z * installing *source* package ‘usethis’ ... 2021-05-18T14:23:28.6007027Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-18T14:23:28.6011618Z ** using staged installation 2021-05-18T14:23:28.6371074Z ** R 2021-05-18T14:23:28.6806913Z ** inst 2021-05-18T14:23:28.6846074Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:23:32.6482865Z ** help 2021-05-18T14:23:32.9032173Z *** installing help indices 2021-05-18T14:23:33.0762593Z *** copying figures 2021-05-18T14:23:33.0771539Z ** building package indices 2021-05-18T14:23:33.4783504Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:33.8496620Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:34.2700366Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:34.2735648Z * DONE (usethis) 2021-05-18T14:23:34.2867018Z 2021-05-18T14:23:34.2871862Z The downloaded source packages are in 2021-05-18T14:23:34.2873658Z ‘/tmp/RtmptnniUf/downloaded_packages’ 2021-05-18T14:23:34.2879783Z Running `R CMD build`... 2021-05-18T14:23:37.0638861Z * checking for file ‘/tmp/RtmptnniUf/remotes73ab1bf44964/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-18T14:23:37.0641033Z * preparing ‘tic’: 2021-05-18T14:23:37.0642188Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:23:37.0643210Z * installing the package to process help pages 2021-05-18T14:23:37.0644653Z * checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:23:37.0645706Z * checking for empty or unneeded directories 2021-05-18T14:23:37.0646818Z Removed empty directory ‘tic/.circleci’ 2021-05-18T14:23:37.0647919Z Removed empty directory ‘tic/pkgdown’ 2021-05-18T14:23:37.0649279Z * building ‘tic_0.10.0.tar.gz’ 2021-05-18T14:23:37.0651878Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:23:37.0653088Z (as ‘lib’ is unspecified) 2021-05-18T14:23:37.5233493Z * installing *source* package ‘tic’ ... 2021-05-18T14:23:37.5266820Z ** using staged installation 2021-05-18T14:23:37.5614931Z ** R 2021-05-18T14:23:37.5874394Z ** inst 2021-05-18T14:23:37.5921359Z ** preparing package for lazy loading 2021-05-18T14:23:38.0489583Z ** help 2021-05-18T14:23:38.2354655Z *** installing help indices 2021-05-18T14:23:38.3668325Z *** copying figures 2021-05-18T14:23:38.3674669Z ** building package indices 2021-05-18T14:23:38.7130899Z ** installing vignettes 2021-05-18T14:23:38.7186781Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:23:39.0558593Z ** testing if installed package can be loaded from final location 2021-05-18T14:23:39.4507660Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:23:39.4540737Z * DONE (tic) 2021-05-18T14:23:39.4706772Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:23:40.1716689Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-18T14:23:42.3480727Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-18T14:23:42.3482239Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-18T14:23:42.3484726Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-18T14:23:42.3487206Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-18T14:23:42.3488324Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-18T14:23:42.3489982Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-18T14:23:42.3491035Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-18T14:23:42.3491993Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:23:42.3493260Z (as ‘lib’ is unspecified) 2021-05-18T14:23:42.3495833Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-18T14:23:42.3499226Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-18T14:23:42.3499964Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-18T14:23:42.3500683Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-18T14:23:42.3501369Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-18T14:23:42.3502095Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-18T14:23:42.3502832Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-18T14:23:42.3503546Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-18T14:23:42.3504291Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-18T14:23:42.3505026Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-18T14:23:42.3506321Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-18T14:23:42.3507132Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-18T14:23:42.3507842Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-18T14:23:42.3509075Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-18T14:23:42.3509786Z xfun (NA -> 0.23 ) [CRAN] 2021-05-18T14:23:42.3510496Z markdown (NA -> 1.1 ) [CRAN] 2021-05-18T14:23:42.3511223Z highr (NA -> 0.9 ) [CRAN] 2021-05-18T14:23:42.3511932Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-18T14:23:42.3512656Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-18T14:23:42.3513375Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-18T14:23:42.3514067Z knitr (NA -> 1.33 ) [CRAN] 2021-05-18T14:23:42.3514798Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-18T14:23:42.3515537Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-18T14:23:42.3516232Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-18T14:23:42.3516973Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-18T14:23:42.3517795Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-18T14:23:42.3518577Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-18T14:23:42.3519457Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-18T14:23:42.3520271Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-18T14:23:42.3521018Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-18T14:23:42.3521767Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-18T14:23:42.3522490Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-18T14:24:00.9265522Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-18T14:24:01.1652189Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-18T14:24:01.1684621Z ================================================== 2021-05-18T14:24:01.1685574Z downloaded 232 KB 2021-05-18T14:24:01.1686140Z 2021-05-18T14:24:01.1720117Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-18T14:24:01.4110577Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-18T14:24:01.4178889Z ================================================== 2021-05-18T14:24:01.4179522Z downloaded 766 KB 2021-05-18T14:24:01.4179844Z 2021-05-18T14:24:01.4216445Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-18T14:24:01.6703421Z Content type 'application/x-tar' length 6108 bytes 2021-05-18T14:24:01.6704212Z ================================================== 2021-05-18T14:24:01.6704702Z downloaded 6108 bytes 2021-05-18T14:24:01.6705026Z 2021-05-18T14:24:01.6741885Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-18T14:24:01.9129004Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-18T14:24:01.9497740Z ================================================== 2021-05-18T14:24:01.9498411Z downloaded 1.1 MB 2021-05-18T14:24:01.9498731Z 2021-05-18T14:24:01.9541803Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-18T14:24:02.2094172Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-18T14:24:02.2143087Z ================================================== 2021-05-18T14:24:02.2143655Z downloaded 673 KB 2021-05-18T14:24:02.2143955Z 2021-05-18T14:24:02.2261643Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-18T14:24:02.7486235Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-18T14:24:02.7487670Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-18T14:24:03.6262856Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-18T14:24:03.6264385Z ================================================== 2021-05-18T14:24:03.6265152Z downloaded 25 KB 2021-05-18T14:24:03.6265674Z 2021-05-18T14:24:03.6302920Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-18T14:24:04.0033809Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-18T14:24:04.0040326Z ================================================== 2021-05-18T14:24:04.0041139Z downloaded 117 KB 2021-05-18T14:24:04.0041482Z 2021-05-18T14:24:04.0094463Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-18T14:24:04.2506458Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-18T14:24:04.2537971Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-18T14:24:05.0834645Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-18T14:24:05.0839743Z ================================================== 2021-05-18T14:24:05.0840970Z downloaded 23 KB 2021-05-18T14:24:05.0841568Z 2021-05-18T14:24:05.0885602Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-18T14:24:05.3278048Z Content type 'binary/octet-stream' length 8130 bytes 2021-05-18T14:24:05.3279282Z ================================================== 2021-05-18T14:24:05.3280263Z downloaded 8130 bytes 2021-05-18T14:24:05.3280816Z 2021-05-18T14:24:05.3325817Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-18T14:24:05.5781764Z Content type 'binary/octet-stream' length 164442 bytes (160 KB) 2021-05-18T14:24:05.5809947Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-18T14:24:06.4780915Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-18T14:24:06.4809686Z ================================================== 2021-05-18T14:24:06.4811064Z downloaded 266 KB 2021-05-18T14:24:06.4811654Z 2021-05-18T14:24:06.4850442Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-18T14:24:06.7236196Z Content type 'binary/octet-stream' length 111996 bytes (109 KB) 2021-05-18T14:24:06.7249175Z ================================================== 2021-05-18T14:24:06.7250017Z downloaded 109 KB 2021-05-18T14:24:06.7250730Z 2021-05-18T14:24:06.7290831Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-18T14:24:06.9764147Z Content type 'application/x-tar' length 81636 bytes (79 KB) 2021-05-18T14:24:06.9775995Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringi_1.6.2.tar.gz' 2021-05-18T14:24:09.0667977Z Content type 'binary/octet-stream' length 7578882 bytes (7.2 MB) 2021-05-18T14:24:09.3099950Z ================================================== 2021-05-18T14:24:09.3100988Z downloaded 7.2 MB 2021-05-18T14:24:09.3101581Z 2021-05-18T14:24:09.3147242Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-18T14:24:09.5516951Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-18T14:24:09.6353933Z ================================================== 2021-05-18T14:24:09.6356056Z downloaded 2.8 MB 2021-05-18T14:24:09.6357734Z 2021-05-18T14:24:09.6394065Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-18T14:24:09.8761632Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-18T14:24:09.9348437Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-18T14:24:10.8089365Z Content type 'application/x-tar' length 11313 bytes (11 KB) 2021-05-18T14:24:10.8091130Z ================================================== 2021-05-18T14:24:10.8091907Z downloaded 11 KB 2021-05-18T14:24:10.8092462Z 2021-05-18T14:24:10.8135658Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-18T14:24:11.0627207Z Content type 'application/x-tar' length 45020 bytes (43 KB) 2021-05-18T14:24:11.0650573Z ================================================== 2021-05-18T14:24:11.0651095Z downloaded 43 KB 2021-05-18T14:24:11.0651415Z 2021-05-18T14:24:11.0691577Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-18T14:24:11.3077072Z Content type 'binary/octet-stream' length 10377 bytes (10 KB) 2021-05-18T14:24:11.3080162Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-18T14:24:12.9325234Z Content type 'binary/octet-stream' length 40913 bytes (39 KB) 2021-05-18T14:24:12.9326258Z ================================================== 2021-05-18T14:24:12.9326842Z downloaded 39 KB 2021-05-18T14:24:12.9327219Z 2021-05-18T14:24:12.9361333Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-18T14:24:13.2104142Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-18T14:24:13.2133030Z ================================================== 2021-05-18T14:24:13.2133925Z downloaded 249 KB 2021-05-18T14:24:13.2134471Z 2021-05-18T14:24:13.2177159Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-18T14:24:13.5932686Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-18T14:24:13.5933945Z ================================================== 2021-05-18T14:24:13.5934685Z downloaded 43 KB 2021-05-18T14:24:13.5935130Z 2021-05-18T14:24:13.5970226Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-18T14:24:13.8678922Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-18T14:24:13.8719335Z ================================================== 2021-05-18T14:24:13.8720286Z downloaded 361 KB 2021-05-18T14:24:13.8720869Z 2021-05-18T14:24:14.2931064Z * installing *source* package ‘utf8’ ... 2021-05-18T14:24:14.3013087Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:14.3014935Z ** using staged installation 2021-05-18T14:24:14.3201189Z ** libs 2021-05-18T14:24:14.3259345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-18T14:24:14.4134816Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-18T14:24:14.6091192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-18T14:24:14.6911572Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:14.7443082Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-18T14:24:14.8295947Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-18T14:24:15.0405317Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-18T14:24:15.1240979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-18T14:24:15.5022958Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-18T14:24:15.6040304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-18T14:24:15.7172454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-18T14:24:15.8037396Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-18T14:24:15.8738979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-18T14:24:15.9491896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-18T14:24:16.0163616Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-18T14:24:16.0846012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-18T14:24:16.1694171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-18T14:24:16.2458999Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-18T14:24:16.2963113Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-18T14:24:16.3790611Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-18T14:24:16.4349370Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-18T14:24:16.6903940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-18T14:24:17.0750244Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-18T14:24:17.2940842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-18T14:24:17.3975748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-18T14:24:17.4725758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-18T14:24:17.5620450Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-18T14:24:17.6524633Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-18T14:24:17.6612340Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:17.6987904Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-18T14:24:17.7014175Z ** R 2021-05-18T14:24:17.7108888Z ** inst 2021-05-18T14:24:17.7124344Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:18.3331692Z ** help 2021-05-18T14:24:18.3684295Z *** installing help indices 2021-05-18T14:24:18.3999745Z ** building package indices 2021-05-18T14:24:18.6472830Z ** installing vignettes 2021-05-18T14:24:18.6536471Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:18.8858713Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:18.9077445Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:19.1331989Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:19.1340760Z * DONE (utf8) 2021-05-18T14:24:19.4119931Z * installing *source* package ‘pkgconfig’ ... 2021-05-18T14:24:19.4131812Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:19.4133099Z ** using staged installation 2021-05-18T14:24:19.4311421Z ** R 2021-05-18T14:24:19.4343175Z ** inst 2021-05-18T14:24:19.4353285Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:19.7192426Z ** help 2021-05-18T14:24:19.7431178Z *** installing help indices 2021-05-18T14:24:19.7632112Z ** building package indices 2021-05-18T14:24:20.0172165Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:20.2485135Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:20.4742328Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:20.4747690Z * DONE (pkgconfig) 2021-05-18T14:24:20.8231884Z * installing *source* package ‘fansi’ ... 2021-05-18T14:24:20.8275970Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:20.8278008Z ** using staged installation 2021-05-18T14:24:20.8464015Z ** libs 2021-05-18T14:24:20.8564379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-18T14:24:20.9069860Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-18T14:24:20.9866702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:21.0518304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-18T14:24:21.1484201Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-18T14:24:21.7223453Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-18T14:24:21.7710288Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-18T14:24:22.2287313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-18T14:24:22.3984678Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-18T14:24:22.4552322Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-18T14:24:22.6086892Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-18T14:24:22.9093841Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-18T14:24:23.0360607Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-18T14:24:23.1108072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-18T14:24:23.1877114Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:24:23.3976839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-18T14:24:23.7955770Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:23.8330880Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-18T14:24:23.8332249Z ** R 2021-05-18T14:24:23.8451318Z ** inst 2021-05-18T14:24:23.8463507Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:24.6658839Z ** help 2021-05-18T14:24:24.7440660Z *** installing help indices 2021-05-18T14:24:24.7973330Z ** building package indices 2021-05-18T14:24:25.0685437Z ** installing vignettes 2021-05-18T14:24:25.0749838Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:25.2932539Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:25.3139987Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:25.5461836Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:25.5471750Z * DONE (fansi) 2021-05-18T14:24:26.1413844Z * installing *source* package ‘diffobj’ ... 2021-05-18T14:24:26.1536271Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:26.1537129Z ** using staged installation 2021-05-18T14:24:26.1727800Z ** libs 2021-05-18T14:24:26.1780019Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-18T14:24:26.4576260Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-18T14:24:26.5336158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:26.5936598Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:26.6221039Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-18T14:24:26.6236796Z ** R 2021-05-18T14:24:26.6734730Z ** inst 2021-05-18T14:24:26.6754931Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:35.7851600Z ** help 2021-05-18T14:24:36.0322273Z *** installing help indices 2021-05-18T14:24:36.2250254Z ** building package indices 2021-05-18T14:24:36.5837086Z ** installing vignettes 2021-05-18T14:24:36.5917450Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:36.9563415Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:36.9764052Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:37.4954968Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:37.5040051Z * DONE (diffobj) 2021-05-18T14:24:37.8710580Z * installing *source* package ‘ps’ ... 2021-05-18T14:24:37.8754845Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:37.8757061Z ** using staged installation 2021-05-18T14:24:38.1140227Z ** libs 2021-05-18T14:24:38.1205548Z gcc -g -O2 -Wall px.c -o px 2021-05-18T14:24:38.2829129Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:38.3633391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-18T14:24:38.4459205Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-18T14:24:38.5316931Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-18T14:24:38.7427855Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-18T14:24:38.8069147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-18T14:24:39.1467717Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-18T14:24:39.3566243Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-18T14:24:39.4892392Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-18T14:24:39.6506856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-18T14:24:40.2183728Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:40.2490697Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-18T14:24:40.2533164Z ** R 2021-05-18T14:24:40.2659421Z ** inst 2021-05-18T14:24:40.2675320Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:41.6727343Z ** help 2021-05-18T14:24:41.8493133Z *** installing help indices 2021-05-18T14:24:41.9727751Z ** building package indices 2021-05-18T14:24:42.3419396Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:42.5769567Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:42.6043160Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:42.8451326Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:42.8465309Z * DONE (ps) 2021-05-18T14:24:43.1047966Z * installing *source* package ‘praise’ ... 2021-05-18T14:24:43.1060663Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:43.1061975Z ** using staged installation 2021-05-18T14:24:43.1192986Z ** R 2021-05-18T14:24:43.1242152Z ** inst 2021-05-18T14:24:43.1254693Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:43.4089752Z ** help 2021-05-18T14:24:43.4216514Z *** installing help indices 2021-05-18T14:24:43.4476980Z ** building package indices 2021-05-18T14:24:43.6800296Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:43.8903580Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:44.0972827Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:44.0978487Z * DONE (praise) 2021-05-18T14:24:44.5186008Z * installing *source* package ‘pkgload’ ... 2021-05-18T14:24:44.5258207Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:44.5259478Z ** using staged installation 2021-05-18T14:24:44.5447324Z ** R 2021-05-18T14:24:44.5579172Z ** inst 2021-05-18T14:24:44.5590368Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:45.7256750Z ** help 2021-05-18T14:24:45.7905064Z *** installing help indices 2021-05-18T14:24:45.8477398Z ** building package indices 2021-05-18T14:24:46.1323767Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:46.7712969Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:47.4888174Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:47.4902795Z * DONE (pkgload) 2021-05-18T14:24:47.7991550Z * installing *source* package ‘evaluate’ ... 2021-05-18T14:24:47.8014173Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:47.8016130Z ** using staged installation 2021-05-18T14:24:47.8195078Z ** R 2021-05-18T14:24:47.8260102Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:48.5013909Z ** help 2021-05-18T14:24:48.5402065Z *** installing help indices 2021-05-18T14:24:48.5874224Z ** building package indices 2021-05-18T14:24:48.8492779Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:49.0775926Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:49.3061913Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:49.3072989Z * DONE (evaluate) 2021-05-18T14:24:49.5761466Z * installing *source* package ‘ellipsis’ ... 2021-05-18T14:24:49.5784183Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:49.5786334Z ** using staged installation 2021-05-18T14:24:49.5969789Z ** libs 2021-05-18T14:24:49.6024208Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-18T14:24:49.7092332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:49.7686938Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:49.8011283Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-18T14:24:49.8013186Z ** R 2021-05-18T14:24:49.8044774Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:50.1459726Z ** help 2021-05-18T14:24:50.1749546Z *** installing help indices 2021-05-18T14:24:50.2006273Z ** building package indices 2021-05-18T14:24:50.4466348Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:50.6867822Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:50.7096364Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:50.9814435Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:50.9820932Z * DONE (ellipsis) 2021-05-18T14:24:51.3313562Z * installing *source* package ‘digest’ ... 2021-05-18T14:24:51.3348853Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:51.3350153Z ** using staged installation 2021-05-18T14:24:51.3481091Z ** libs 2021-05-18T14:24:51.3548239Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-18T14:24:51.5675705Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-18T14:24:51.9643533Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-18T14:24:52.6289959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-18T14:24:52.9580044Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-18T14:24:53.6494640Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-18T14:24:53.7430417Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-18T14:24:54.0137761Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-18T14:24:54.0941579Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:54.1237601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-18T14:24:54.3083962Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-18T14:24:54.3744437Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-18T14:24:54.4642471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-18T14:24:54.8566144Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-18T14:24:55.0002772Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-18T14:24:55.7105300Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-18T14:24:55.8612646Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-18T14:24:56.1668571Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:56.2212475Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-18T14:24:56.2244007Z ** R 2021-05-18T14:24:56.2331779Z ** demo 2021-05-18T14:24:56.2341577Z ** inst 2021-05-18T14:24:56.2362542Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:56.9570236Z ** help 2021-05-18T14:24:57.0029691Z *** installing help indices 2021-05-18T14:24:57.0370044Z ** building package indices 2021-05-18T14:24:57.2869878Z ** installing vignettes 2021-05-18T14:24:57.2944356Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:57.5305557Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:57.5521650Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:57.7763157Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:57.7778425Z * DONE (digest) 2021-05-18T14:24:58.0598572Z * installing *source* package ‘brio’ ... 2021-05-18T14:24:58.0616309Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-18T14:24:58.0617794Z ** using staged installation 2021-05-18T14:24:58.0846284Z ** libs 2021-05-18T14:24:58.0904183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-18T14:24:58.1399398Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-18T14:24:58.2032413Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:24:58.2599050Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-18T14:24:58.3258557Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-18T14:24:58.3902121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-18T14:24:58.4912395Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-18T14:24:58.5579583Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-18T14:24:58.6324242Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:24:58.6691333Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-18T14:24:58.6692967Z ** R 2021-05-18T14:24:58.6737368Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:24:58.9802370Z ** help 2021-05-18T14:24:59.0037709Z *** installing help indices 2021-05-18T14:24:59.0295935Z ** building package indices 2021-05-18T14:24:59.2905591Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:24:59.5135491Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:24:59.5354910Z ** testing if installed package can be loaded from final location 2021-05-18T14:24:59.7699034Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:24:59.7703542Z * DONE (brio) 2021-05-18T14:25:00.1606771Z * installing *source* package ‘xml2’ ... 2021-05-18T14:25:00.1650996Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:00.1652379Z ** using staged installation 2021-05-18T14:25:00.1786895Z Found pkg-config cflags and libs! 2021-05-18T14:25:00.2927552Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-18T14:25:00.2929540Z Using PKG_LIBS=-lxml2 2021-05-18T14:25:00.4713092Z ** libs 2021-05-18T14:25:00.4775524Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-18T14:25:01.1492361Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:25:01.2096046Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-18T14:25:01.9581405Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-18T14:25:02.5122391Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-18T14:25:03.4566746Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-18T14:25:05.8645888Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-18T14:25:06.5704165Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-18T14:25:07.3414808Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-18T14:25:07.9322141Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-18T14:25:08.5396175Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:25:08.6394903Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-18T14:25:08.6447573Z ** R 2021-05-18T14:25:08.6584842Z ** inst 2021-05-18T14:25:08.6601656Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:09.9755308Z ** help 2021-05-18T14:25:10.1034003Z *** installing help indices 2021-05-18T14:25:10.1696927Z ** building package indices 2021-05-18T14:25:10.4709925Z ** installing vignettes 2021-05-18T14:25:10.4884293Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:10.7207107Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:25:10.7431042Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:10.9968954Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:10.9984623Z * DONE (xml2) 2021-05-18T14:25:11.3457589Z * installing *source* package ‘xfun’ ... 2021-05-18T14:25:11.3510721Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:11.3512130Z ** using staged installation 2021-05-18T14:25:11.3721082Z ** libs 2021-05-18T14:25:11.3833108Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:25:11.5131527Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:25:11.5711634Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:25:11.6170991Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-18T14:25:11.6182187Z ** R 2021-05-18T14:25:11.6381631Z ** inst 2021-05-18T14:25:11.6397313Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:25:13.5140299Z ** help 2021-05-18T14:25:13.7007943Z *** installing help indices 2021-05-18T14:25:13.8327508Z ** building package indices 2021-05-18T14:25:14.1943278Z ** installing vignettes 2021-05-18T14:25:14.2022280Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:25:14.4389695Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:25:14.4608014Z ** testing if installed package can be loaded from final location 2021-05-18T14:25:14.7278776Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:25:14.7294496Z * DONE (xfun) 2021-05-18T14:25:18.2340247Z * installing *source* package ‘stringi’ ... 2021-05-18T14:25:18.3718064Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-18T14:25:18.3718925Z ** using staged installation 2021-05-18T14:25:18.5152849Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-18T14:25:18.5154264Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-18T14:25:18.7116705Z checking for endianness... little 2021-05-18T14:25:18.9121636Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-18T14:25:19.1221646Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-18T14:25:19.1228924Z checking for cat... /usr/bin/cat 2021-05-18T14:25:19.3963828Z checking for local ICUDT_DIR... icu69/data 2021-05-18T14:25:19.3965196Z checking for gcc... gcc 2021-05-18T14:25:19.4679713Z checking whether the C compiler works... yes 2021-05-18T14:25:19.4681221Z checking for C compiler default output file name... a.out 2021-05-18T14:25:19.5126294Z checking for suffix of executables... 2021-05-18T14:25:19.5690068Z checking whether we are cross compiling... no 2021-05-18T14:25:19.5965982Z checking for suffix of object files... o 2021-05-18T14:25:19.6224042Z checking whether we are using the GNU C compiler... yes 2021-05-18T14:25:19.6471364Z checking whether gcc accepts -g... yes 2021-05-18T14:25:19.6898650Z checking for gcc option to accept ISO C89... none needed 2021-05-18T14:25:19.7141368Z checking how to run the C preprocessor... gcc -E 2021-05-18T14:25:19.7437675Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-18T14:25:19.7457513Z checking for egrep... /usr/bin/grep -E 2021-05-18T14:25:19.8756448Z checking for ANSI C header files... yes 2021-05-18T14:25:19.9109295Z checking for sys/types.h... yes 2021-05-18T14:25:19.9577683Z checking for sys/stat.h... yes 2021-05-18T14:25:20.0080964Z checking for stdlib.h... yes 2021-05-18T14:25:20.0553210Z checking for string.h... yes 2021-05-18T14:25:20.0966107Z checking for memory.h... yes 2021-05-18T14:25:20.1393456Z checking for strings.h... yes 2021-05-18T14:25:20.1871611Z checking for inttypes.h... yes 2021-05-18T14:25:20.2339002Z checking for stdint.h... yes 2021-05-18T14:25:20.2854871Z checking for unistd.h... yes 2021-05-18T14:25:20.3416394Z checking elf.h usability... yes 2021-05-18T14:25:20.3540794Z checking elf.h presence... yes 2021-05-18T14:25:20.3542138Z checking for elf.h... yes 2021-05-18T14:25:20.4175466Z checking whether we are using the GNU C++ compiler... yes 2021-05-18T14:25:20.4461757Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-18T14:25:20.8549330Z checking whether the C++ compiler supports the long long type... yes 2021-05-18T14:25:20.8902915Z checking whether the compiler implements namespaces... yes 2021-05-18T14:25:21.0693931Z checking whether the compiler supports Standard Template Library... yes 2021-05-18T14:25:21.7450079Z checking whether std::map is available... yes 2021-05-18T14:25:21.7478801Z checking for pkg-config... /usr/bin/pkg-config 2021-05-18T14:25:21.7643083Z checking with pkg-config for the system ICU4C... 66.1 2021-05-18T14:25:21.7668743Z checking for ICU4C >= 55... yes 2021-05-18T14:25:21.7746590Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-18T14:25:22.1865735Z checking whether an ICU4C-based project can be built... yes 2021-05-18T14:25:22.2572759Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-18T14:25:22.6395326Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-18T14:25:23.6454290Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-18T14:25:24.4487788Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-18T14:25:24.4908507Z configure: creating ./config.status 2021-05-18T14:25:24.6041752Z config.status: creating src/Makevars 2021-05-18T14:25:24.6234218Z config.status: creating src/uconfig_local.h 2021-05-18T14:25:24.6439797Z config.status: creating src/install.libs.R 2021-05-18T14:25:24.6630670Z 2021-05-18T14:25:24.6631742Z *** stringi configure summary: 2021-05-18T14:25:24.6632537Z ICU_FOUND=1 2021-05-18T14:25:24.6633309Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-18T14:25:24.6634727Z STRINGI_CFLAGS= -fpic 2021-05-18T14:25:24.6636020Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-18T14:25:24.6637251Z STRINGI_CXXFLAGS= -fpic 2021-05-18T14:25:24.6638574Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-18T14:25:24.6639864Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-18T14:25:24.6640560Z 2021-05-18T14:25:24.6641311Z *** Compiler settings used: 2021-05-18T14:25:24.6642095Z CC=gcc 2021-05-18T14:25:24.6643021Z LD=g++ -std=gnu++14 2021-05-18T14:25:24.6644036Z CFLAGS=-g -O2 -fpic 2021-05-18T14:25:24.6645263Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-18T14:25:24.6646392Z CXX=g++ -std=gnu++11 2021-05-18T14:25:24.6647409Z CXXFLAGS=-g -O2 -fpic 2021-05-18T14:25:24.6648191Z LDFLAGS= 2021-05-18T14:25:24.6651539Z LIBS= 2021-05-18T14:25:24.6651800Z 2021-05-18T14:25:24.7088562Z ** libs 2021-05-18T14:25:24.7201473Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-18T14:25:25.5964972Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-18T14:25:26.4467552Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-18T14:25:27.3484872Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-18T14:25:28.2927112Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-18T14:25:28.9910032Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-18T14:25:30.1405359Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-18T14:25:30.8910423Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-18T14:25:31.6936107Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-18T14:25:32.4247605Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-18T14:25:33.3856825Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-18T14:25:34.1950711Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-18T14:25:35.1700428Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-18T14:25:36.0820056Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-18T14:25:36.9034992Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-18T14:25:38.1547376Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-18T14:25:40.2654584Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-18T14:25:41.2011945Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-18T14:25:42.0885786Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-18T14:25:42.7882378Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-18T14:25:43.5099847Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-18T14:25:44.7273303Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-18T14:25:45.6217366Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-18T14:25:46.5132877Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-18T14:25:47.5611451Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-18T14:25:48.5983538Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-18T14:25:49.3680106Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-18T14:25:50.2053156Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-18T14:25:51.1092096Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-18T14:25:52.3146323Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-18T14:25:53.4879185Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-18T14:25:54.7911557Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-18T14:25:55.8833990Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-18T14:25:56.8506266Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-18T14:25:57.9032427Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-18T14:25:58.7782359Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-18T14:25:59.7072362Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-18T14:26:00.5825405Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-18T14:26:01.4795408Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-18T14:26:02.5949597Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-18T14:26:03.7324226Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-18T14:26:04.9002958Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-18T14:26:06.0255667Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-18T14:26:07.0033314Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-18T14:26:08.0331479Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-18T14:26:08.8010967Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-18T14:26:09.7626174Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-18T14:26:10.7230055Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-18T14:26:11.8181309Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-18T14:26:12.5995159Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-18T14:26:13.3711798Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-18T14:26:14.3860341Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-18T14:26:15.4016967Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-18T14:26:16.6497274Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-18T14:26:17.7307679Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-18T14:26:18.7415398Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-18T14:26:19.6329611Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-18T14:26:19.6499151Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-18T14:26:20.7839486Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-18T14:26:21.5410072Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-18T14:26:22.3448839Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-18T14:26:23.3938535Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-18T14:26:24.4136695Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-18T14:26:25.9005529Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-18T14:26:26.8324033Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-18T14:26:27.9294686Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-18T14:26:28.8372126Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-18T14:26:30.9020640Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-18T14:26:31.7893718Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-18T14:26:32.5674540Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-18T14:26:33.6757319Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-18T14:26:34.5868025Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-18T14:26:35.3930249Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-18T14:26:36.4341088Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-18T14:26:37.4145739Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-18T14:26:38.5720432Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-18T14:26:39.5292988Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-18T14:26:40.4903508Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-18T14:26:41.3309989Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-18T14:26:42.1432150Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-18T14:26:42.9802173Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-18T14:26:43.6928109Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-18T14:26:44.4631458Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-18T14:26:46.2663686Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:26:46.5185240Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-18T14:26:46.6222969Z ** R 2021-05-18T14:26:46.6615120Z ** inst 2021-05-18T14:26:46.6628707Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:26:48.2026321Z ** help 2021-05-18T14:26:48.7639038Z *** installing help indices 2021-05-18T14:26:49.0423298Z ** building package indices 2021-05-18T14:26:49.9107183Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:26:49.9116531Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:26:49.9117968Z ** testing if installed package can be loaded from final location 2021-05-18T14:26:50.0836661Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:26:50.0849895Z * DONE (stringi) 2021-05-18T14:26:51.4253800Z * installing *source* package ‘Rcpp’ ... 2021-05-18T14:26:51.4677140Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-18T14:26:51.4679018Z ** using staged installation 2021-05-18T14:26:51.4823364Z ** libs 2021-05-18T14:26:51.4880407Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-18T14:26:55.5080368Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-18T14:27:15.6181398Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-18T14:27:15.9012601Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-18T14:27:20.3251402Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-18T14:27:28.6399106Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-18T14:27:32.5521553Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:27:32.7927055Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-18T14:27:32.8087045Z ** R 2021-05-18T14:27:32.8312530Z ** inst 2021-05-18T14:27:32.8806925Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:35.3689635Z ** help 2021-05-18T14:27:35.4835932Z *** installing help indices 2021-05-18T14:27:35.5645549Z ** building package indices 2021-05-18T14:27:35.8824294Z ** installing vignettes 2021-05-18T14:27:35.8899641Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:36.2279041Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:27:36.2545907Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:36.6308465Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:36.6405715Z * DONE (Rcpp) 2021-05-18T14:27:37.0175427Z * installing *source* package ‘commonmark’ ... 2021-05-18T14:27:37.0222106Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:37.0224374Z ** using staged installation 2021-05-18T14:27:37.0367433Z ** libs 2021-05-18T14:27:37.0425495Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-18T14:27:37.0481158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-18T14:27:37.1025914Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:27:37.1514024Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-18T14:27:37.2303716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-18T14:27:37.2908474Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-18T14:27:37.6534310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-18T14:27:37.7658445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-18T14:27:39.6103957Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-18T14:27:40.5311745Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-18T14:27:42.8382183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-18T14:27:47.1781832Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-18T14:27:47.3314620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-18T14:27:47.3921910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-18T14:27:47.5233512Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-18T14:27:47.6331463Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-18T14:27:47.7356711Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-18T14:27:47.9734842Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-18T14:27:48.2158069Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-18T14:27:48.3758187Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-18T14:27:48.4318045Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-18T14:27:48.4844076Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-18T14:27:48.6227655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-18T14:27:48.6675818Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-18T14:27:48.7426087Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-18T14:27:48.8115297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-18T14:27:48.8579919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-18T14:27:48.9177672Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-18T14:27:49.0068467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-18T14:27:49.1400203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-18T14:27:49.2006451Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-18T14:27:49.2945323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-18T14:27:49.5255219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-18T14:27:49.5733925Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-18T14:27:49.7467618Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-18T14:27:49.8505786Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-18T14:27:50.2034737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-18T14:27:50.2691049Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-18T14:27:50.2849567Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:27:50.3440108Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-18T14:27:50.3511824Z ** R 2021-05-18T14:27:50.3544956Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:50.6542365Z ** help 2021-05-18T14:27:50.6710309Z *** installing help indices 2021-05-18T14:27:50.6911091Z ** building package indices 2021-05-18T14:27:50.9276319Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:51.1642970Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:27:51.1855808Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:51.4120428Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:51.4128165Z * DONE (commonmark) 2021-05-18T14:27:51.7198551Z * installing *source* package ‘brew’ ... 2021-05-18T14:27:51.7202304Z ** using staged installation 2021-05-18T14:27:51.7308705Z ** R 2021-05-18T14:27:51.7346342Z ** inst 2021-05-18T14:27:51.7382580Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:52.2044854Z ** help 2021-05-18T14:27:52.2250481Z *** installing help indices 2021-05-18T14:27:52.2529616Z ** building package indices 2021-05-18T14:27:52.5007646Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:52.7226794Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:52.9400066Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:52.9410068Z * DONE (brew) 2021-05-18T14:27:53.2252667Z * installing *source* package ‘sessioninfo’ ... 2021-05-18T14:27:53.2269632Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:53.2270904Z ** using staged installation 2021-05-18T14:27:53.2478044Z ** R 2021-05-18T14:27:53.2527059Z ** inst 2021-05-18T14:27:53.2541389Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:53.8411614Z ** help 2021-05-18T14:27:53.8605009Z *** installing help indices 2021-05-18T14:27:53.8845398Z ** building package indices 2021-05-18T14:27:54.1339449Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:54.4139993Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:54.7063848Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:54.7071994Z * DONE (sessioninfo) 2021-05-18T14:27:54.9791746Z * installing *source* package ‘prettyunits’ ... 2021-05-18T14:27:54.9805952Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:54.9808197Z ** using staged installation 2021-05-18T14:27:54.9947933Z ** R 2021-05-18T14:27:55.0000709Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:27:55.4050133Z ** help 2021-05-18T14:27:55.4414207Z *** installing help indices 2021-05-18T14:27:55.4683711Z ** building package indices 2021-05-18T14:27:55.7127081Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:27:55.9454844Z ** testing if installed package can be loaded from final location 2021-05-18T14:27:56.1633563Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:27:56.1639689Z * DONE (prettyunits) 2021-05-18T14:27:56.9248057Z * installing *source* package ‘vctrs’ ... 2021-05-18T14:27:56.9427272Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-18T14:27:56.9428771Z ** using staged installation 2021-05-18T14:27:56.9653771Z ** libs 2021-05-18T14:27:56.9740270Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-18T14:27:57.1206669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-18T14:27:57.2287846Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-18T14:27:57.3352206Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-18T14:27:57.6393740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-18T14:27:57.7862252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-18T14:27:57.9596293Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-18T14:27:58.0377723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-18T14:27:58.1663766Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-18T14:27:58.2584467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-18T14:27:58.4263098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-18T14:27:58.6875468Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-18T14:27:58.8511689Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-18T14:27:58.9697784Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-18T14:27:59.2932871Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-18T14:27:59.3676456Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-18T14:27:59.8578647Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-18T14:27:59.9906658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-18T14:28:00.1490138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-18T14:28:00.3222870Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-18T14:28:00.4038634Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-18T14:28:00.7110391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:28:00.7866185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-18T14:28:01.1933462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-18T14:28:01.2904566Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-18T14:28:02.2049427Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-18T14:28:02.3962072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-18T14:28:02.5063558Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-18T14:28:02.6099752Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-18T14:28:02.8211206Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-18T14:28:02.9636904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-18T14:28:04.0821756Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-18T14:28:04.2165406Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-18T14:28:04.3759255Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-18T14:28:04.7041503Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-18T14:28:04.8272295Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-18T14:28:04.9286344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-18T14:28:05.0657103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-18T14:28:06.4332849Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-18T14:28:06.4336230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-18T14:28:06.4338698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-18T14:28:06.5995799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-18T14:28:06.9509782Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-18T14:28:07.0181826Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-18T14:28:07.2644661Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-18T14:28:07.4476415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-18T14:28:07.5788185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-18T14:28:08.0371374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-18T14:28:08.2438979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-18T14:28:08.4116844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-18T14:28:08.5396631Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-18T14:28:08.6309310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-18T14:28:08.8006309Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-18T14:28:08.9708446Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-18T14:28:09.1367837Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-18T14:28:09.2702748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-18T14:28:09.3685507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-18T14:28:09.4550393Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-18T14:28:09.5339354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:28:10.3434537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-18T14:28:10.3919811Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:10.4630996Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-18T14:28:10.4671953Z ** R 2021-05-18T14:28:10.5132529Z ** inst 2021-05-18T14:28:10.5162371Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:14.2922276Z ** help 2021-05-18T14:28:14.6337710Z *** installing help indices 2021-05-18T14:28:14.8779100Z *** copying figures 2021-05-18T14:28:14.8793318Z ** building package indices 2021-05-18T14:28:15.3085717Z ** installing vignettes 2021-05-18T14:28:15.3288848Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:15.6309555Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:15.6559552Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:16.0219708Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:16.0256863Z * DONE (vctrs) 2021-05-18T14:28:16.3939644Z * installing *source* package ‘processx’ ... 2021-05-18T14:28:16.3981091Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:16.3982336Z ** using staged installation 2021-05-18T14:28:16.4197219Z ** libs 2021-05-18T14:28:16.4255840Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-18T14:28:16.5974639Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-18T14:28:16.5976246Z supervisor/utils.c -o supervisor/supervisor 2021-05-18T14:28:16.8135138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:28:16.9235315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-18T14:28:18.3765721Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-18T14:28:18.4537717Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-18T14:28:18.4539173Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-18T14:28:18.4876885Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:28:18.5823753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-18T14:28:18.7276699Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-18T14:28:19.1686038Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-18T14:28:19.2978696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-18T14:28:19.4540399Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-18T14:28:19.5763564Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-18T14:28:19.6747126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-18T14:28:20.1073201Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-18T14:28:20.2312361Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-18T14:28:20.3674928Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-18T14:28:20.4368149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-18T14:28:20.5263316Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:20.5611014Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-18T14:28:20.5647614Z ** R 2021-05-18T14:28:20.5815950Z ** inst 2021-05-18T14:28:20.5826825Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:22.9199751Z ** help 2021-05-18T14:28:23.0130732Z *** installing help indices 2021-05-18T14:28:23.0682192Z ** building package indices 2021-05-18T14:28:23.3502057Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:23.5887275Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:23.6242412Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:23.8872800Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:23.8890708Z * DONE (processx) 2021-05-18T14:28:24.2173481Z * installing *source* package ‘markdown’ ... 2021-05-18T14:28:24.2207408Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:24.2209272Z ** using staged installation 2021-05-18T14:28:24.2415159Z ** libs 2021-05-18T14:28:24.2475575Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-18T14:28:24.3295200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-18T14:28:24.3941325Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-18T14:28:24.6164156Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-18T14:28:24.7490262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-18T14:28:24.8412330Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-18T14:28:24.8909521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-18T14:28:24.9420077Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-18T14:28:25.2108189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-18T14:28:25.3882431Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-18T14:28:26.7915290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-18T14:28:26.8532727Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:26.8851296Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-18T14:28:26.8859598Z ** R 2021-05-18T14:28:26.8923065Z ** inst 2021-05-18T14:28:26.8946320Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:27.4777316Z ** help 2021-05-18T14:28:27.5194771Z *** installing help indices 2021-05-18T14:28:27.5535289Z ** building package indices 2021-05-18T14:28:27.8021854Z ** installing vignettes 2021-05-18T14:28:27.8087734Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:28.0307662Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:28.0518506Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:28.2757384Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:28.2767639Z * DONE (markdown) 2021-05-18T14:28:29.4384260Z * installing *source* package ‘highr’ ... 2021-05-18T14:28:29.4393349Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:29.4394343Z ** using staged installation 2021-05-18T14:28:29.4394964Z ** R 2021-05-18T14:28:29.4395477Z ** inst 2021-05-18T14:28:29.4396497Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:29.4397264Z ** help 2021-05-18T14:28:29.4397907Z *** installing help indices 2021-05-18T14:28:29.4398616Z ** building package indices 2021-05-18T14:28:29.4399320Z ** installing vignettes 2021-05-18T14:28:29.4400275Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:29.5038083Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:29.7225781Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:29.7232847Z * DONE (highr) 2021-05-18T14:28:30.0775432Z * installing *source* package ‘stringr’ ... 2021-05-18T14:28:30.0814689Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:30.0815996Z ** using staged installation 2021-05-18T14:28:30.1038646Z ** R 2021-05-18T14:28:30.1144353Z ** data 2021-05-18T14:28:30.1151357Z *** moving datasets to lazyload DB 2021-05-18T14:28:30.1359889Z ** inst 2021-05-18T14:28:30.1379790Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:30.8344105Z ** help 2021-05-18T14:28:30.9299510Z *** installing help indices 2021-05-18T14:28:31.0020484Z *** copying figures 2021-05-18T14:28:31.0023935Z ** building package indices 2021-05-18T14:28:31.3117904Z ** installing vignettes 2021-05-18T14:28:31.3213924Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:31.5567968Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:31.8012539Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:31.8022309Z * DONE (stringr) 2021-05-18T14:28:32.0759512Z * installing *source* package ‘rversions’ ... 2021-05-18T14:28:32.0774395Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:32.0776277Z ** using staged installation 2021-05-18T14:28:32.0948651Z ** R 2021-05-18T14:28:32.0994829Z ** inst 2021-05-18T14:28:32.1005007Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:32.5213224Z ** help 2021-05-18T14:28:32.5460019Z *** installing help indices 2021-05-18T14:28:32.5711266Z *** copying figures 2021-05-18T14:28:32.5714379Z ** building package indices 2021-05-18T14:28:32.8216104Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:33.0794689Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:33.3344592Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:33.3350766Z * DONE (rversions) 2021-05-18T14:28:33.8726886Z * installing *source* package ‘pillar’ ... 2021-05-18T14:28:33.8846293Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:33.8847537Z ** using staged installation 2021-05-18T14:28:33.9094134Z ** R 2021-05-18T14:28:33.9322323Z ** inst 2021-05-18T14:28:33.9372504Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:36.4690045Z ** help 2021-05-18T14:28:36.5842095Z *** installing help indices 2021-05-18T14:28:36.6647563Z *** copying figures 2021-05-18T14:28:36.6655595Z ** building package indices 2021-05-18T14:28:36.9640243Z ** installing vignettes 2021-05-18T14:28:36.9741821Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:37.3427003Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:37.7455887Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:37.7480512Z * DONE (pillar) 2021-05-18T14:28:38.0970189Z * installing *source* package ‘callr’ ... 2021-05-18T14:28:38.1003053Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:38.1005018Z ** using staged installation 2021-05-18T14:28:38.1206895Z ** R 2021-05-18T14:28:38.1385510Z ** inst 2021-05-18T14:28:38.1398838Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:42.8053995Z ** help 2021-05-18T14:28:42.9656036Z *** installing help indices 2021-05-18T14:28:43.0561161Z ** building package indices 2021-05-18T14:28:43.3826203Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:43.6336251Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:43.9537368Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:43.9577289Z * DONE (callr) 2021-05-18T14:28:44.6034420Z * installing *source* package ‘knitr’ ... 2021-05-18T14:28:44.6165654Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:44.6167471Z ** using staged installation 2021-05-18T14:28:44.6650937Z ** R 2021-05-18T14:28:44.7119928Z ** demo 2021-05-18T14:28:44.7129975Z ** inst 2021-05-18T14:28:44.7251125Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:50.6764106Z ** help 2021-05-18T14:28:50.9144828Z *** installing help indices 2021-05-18T14:28:51.0736286Z ** building package indices 2021-05-18T14:28:51.4485415Z ** installing vignettes 2021-05-18T14:28:51.4594762Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:51.7028336Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:52.0650097Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:52.0692666Z * DONE (knitr) 2021-05-18T14:28:52.3347728Z * installing *source* package ‘xopen’ ... 2021-05-18T14:28:52.3358840Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:52.3360364Z ** using staged installation 2021-05-18T14:28:52.3568050Z ** R 2021-05-18T14:28:52.3601869Z ** inst 2021-05-18T14:28:52.3624402Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:52.6892147Z ** help 2021-05-18T14:28:52.7045358Z *** installing help indices 2021-05-18T14:28:52.7307329Z ** building package indices 2021-05-18T14:28:52.9709761Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:53.2050136Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:53.4191742Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:53.4198063Z * DONE (xopen) 2021-05-18T14:28:53.9677917Z * installing *source* package ‘tibble’ ... 2021-05-18T14:28:53.9804494Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:53.9805358Z ** using staged installation 2021-05-18T14:28:54.0107436Z ** libs 2021-05-18T14:28:54.0165893Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-18T14:28:54.0746913Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-18T14:28:54.1596387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:28:54.2053822Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-18T14:28:54.3265201Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:28:54.3538971Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-18T14:28:54.3555101Z ** R 2021-05-18T14:28:54.3760845Z ** inst 2021-05-18T14:28:54.3811731Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:28:56.8974339Z ** help 2021-05-18T14:28:56.9868548Z *** installing help indices 2021-05-18T14:28:57.0506879Z *** copying figures 2021-05-18T14:28:57.0512530Z ** building package indices 2021-05-18T14:28:57.3453405Z ** installing vignettes 2021-05-18T14:28:57.3539423Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:28:57.8081078Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:28:57.8290144Z ** testing if installed package can be loaded from final location 2021-05-18T14:28:58.2999904Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:28:58.3005771Z * DONE (tibble) 2021-05-18T14:28:58.6424736Z * installing *source* package ‘pkgbuild’ ... 2021-05-18T14:28:58.6452705Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-18T14:28:58.6455136Z ** using staged installation 2021-05-18T14:28:58.6671209Z ** R 2021-05-18T14:28:58.6778267Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:00.3009796Z ** help 2021-05-18T14:29:00.3455549Z *** installing help indices 2021-05-18T14:29:00.3881017Z ** building package indices 2021-05-18T14:29:00.6565363Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:01.0023388Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:01.3414229Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:01.3428274Z * DONE (pkgbuild) 2021-05-18T14:29:01.8541090Z * installing *source* package ‘roxygen2’ ... 2021-05-18T14:29:01.8623758Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:01.8627063Z ** using staged installation 2021-05-18T14:29:01.8876581Z ** libs 2021-05-18T14:29:01.8938920Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-18T14:29:07.8208187Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-18T14:29:11.7377719Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-18T14:29:15.6495443Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-18T14:29:19.5912409Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-18T14:29:25.8449296Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-18T14:29:29.9634532Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:29:30.0804191Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-18T14:29:30.0852825Z ** R 2021-05-18T14:29:30.1224652Z ** inst 2021-05-18T14:29:30.1248879Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:35.5099112Z ** help 2021-05-18T14:29:35.6002112Z *** installing help indices 2021-05-18T14:29:35.6681039Z *** copying figures 2021-05-18T14:29:35.6684600Z ** building package indices 2021-05-18T14:29:35.9649491Z ** installing vignettes 2021-05-18T14:29:35.9764327Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:36.4340311Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:29:36.4572212Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:36.9970584Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:36.9975135Z * DONE (roxygen2) 2021-05-18T14:29:37.2782432Z * installing *source* package ‘rematch2’ ... 2021-05-18T14:29:37.2796338Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:37.2797962Z ** using staged installation 2021-05-18T14:29:37.3013238Z ** R 2021-05-18T14:29:37.3067041Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:37.9449594Z ** help 2021-05-18T14:29:37.9823829Z *** installing help indices 2021-05-18T14:29:38.0107671Z ** building package indices 2021-05-18T14:29:38.2542573Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:38.7004504Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:39.1453495Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:39.1454922Z * DONE (rematch2) 2021-05-18T14:29:39.4705197Z * installing *source* package ‘rcmdcheck’ ... 2021-05-18T14:29:39.4732853Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:39.4734453Z ** using staged installation 2021-05-18T14:29:39.4909641Z ** R 2021-05-18T14:29:39.5005467Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:41.1729842Z ** help 2021-05-18T14:29:41.2163438Z *** installing help indices 2021-05-18T14:29:41.2616677Z ** building package indices 2021-05-18T14:29:41.5158144Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:41.8646531Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:42.2375785Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:42.2392395Z * DONE (rcmdcheck) 2021-05-18T14:29:42.5673622Z * installing *source* package ‘waldo’ ... 2021-05-18T14:29:42.5702402Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:42.5703533Z ** using staged installation 2021-05-18T14:29:42.5902465Z ** R 2021-05-18T14:29:42.5973981Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:29:43.5329598Z ** help 2021-05-18T14:29:43.5494893Z *** installing help indices 2021-05-18T14:29:43.5714873Z *** copying figures 2021-05-18T14:29:43.5716391Z ** building package indices 2021-05-18T14:29:43.8111822Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:29:44.1158428Z ** testing if installed package can be loaded from final location 2021-05-18T14:29:44.4222116Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:29:44.4232207Z * DONE (waldo) 2021-05-18T14:29:45.0798576Z * installing *source* package ‘testthat’ ... 2021-05-18T14:29:45.0917659Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-18T14:29:45.0918704Z ** using staged installation 2021-05-18T14:29:45.1207792Z ** libs 2021-05-18T14:29:45.1279059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:29:45.1853232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-18T14:29:45.2479157Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-18T14:29:46.2531516Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-18T14:29:47.0801204Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-18T14:30:08.3610339Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:30:08.5538898Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-18T14:30:08.5672716Z ** R 2021-05-18T14:30:08.6118371Z ** inst 2021-05-18T14:30:08.6179222Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:22.8563005Z ** help 2021-05-18T14:30:23.1348074Z *** installing help indices 2021-05-18T14:30:23.3559724Z *** copying figures 2021-05-18T14:30:23.3566418Z ** building package indices 2021-05-18T14:30:23.7683034Z ** installing vignettes 2021-05-18T14:30:23.7817812Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:24.0567637Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:30:24.0876238Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:24.6326767Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:24.6423924Z * DONE (testthat) 2021-05-18T14:30:25.1077444Z * installing *source* package ‘devtools’ ... 2021-05-18T14:30:25.1145685Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-18T14:30:25.1147216Z ** using staged installation 2021-05-18T14:30:25.1607219Z ** R 2021-05-18T14:30:25.1803440Z ** inst 2021-05-18T14:30:25.1817821Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:27.6758633Z ** help 2021-05-18T14:30:27.8151108Z *** installing help indices 2021-05-18T14:30:27.9113031Z *** copying figures 2021-05-18T14:30:27.9120026Z ** building package indices 2021-05-18T14:30:28.2409965Z ** installing vignettes 2021-05-18T14:30:28.2497941Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:29.1950899Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:30.1684664Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:30.1710515Z * DONE (devtools) 2021-05-18T14:30:30.1838729Z 2021-05-18T14:30:30.1839607Z The downloaded source packages are in 2021-05-18T14:30:30.1840959Z ‘/tmp/RtmptnniUf/downloaded_packages’ 2021-05-18T14:30:30.3805590Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-18T14:30:31.2594847Z 2021-05-18T14:30:31.6351946Z 2021-05-18T14:30:31.6356903Z checking for file ‘/tmp/RtmptnniUf/remotes73ab1c682633/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-18T14:30:31.6415649Z 2021-05-18T14:30:31.6447996Z ✔ checking for file ‘/tmp/RtmptnniUf/remotes73ab1c682633/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-18T14:30:31.6574209Z 2021-05-18T14:30:31.6574919Z 2021-05-18T14:30:31.6575980Z ─ preparing ‘desc’: 2021-05-18T14:30:31.6576324Z 2021-05-18T14:30:31.6576672Z 2021-05-18T14:30:31.6730492Z checking DESCRIPTION meta-information ... 2021-05-18T14:30:31.6734194Z 2021-05-18T14:30:31.6735334Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:30:31.7684257Z 2021-05-18T14:30:31.7812069Z 2021-05-18T14:30:31.7813668Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:30:31.7823078Z 2021-05-18T14:30:31.7847144Z 2021-05-18T14:30:31.7848288Z ─ checking for empty or unneeded directories 2021-05-18T14:30:31.7852705Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:30:31.7861393Z 2021-05-18T14:30:31.7886133Z 2021-05-18T14:30:31.7887113Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-18T14:30:31.9357032Z 2021-05-18T14:30:31.9359722Z 2021-05-18T14:30:31.9360134Z 2021-05-18T14:30:31.9482695Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:30:32.4853833Z (as ‘lib’ is unspecified) 2021-05-18T14:30:32.4861107Z * installing *source* package ‘desc’ ... 2021-05-18T14:30:32.4861981Z ** using staged installation 2021-05-18T14:30:32.4862597Z ** R 2021-05-18T14:30:32.4863101Z ** inst 2021-05-18T14:30:32.4864109Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:34.6082174Z ** help 2021-05-18T14:30:34.7765379Z *** installing help indices 2021-05-18T14:30:34.8943637Z ** building package indices 2021-05-18T14:30:35.2265370Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:35.4537663Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:35.7123152Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:35.7145267Z * DONE (desc) 2021-05-18T14:30:35.9875821Z 2021-05-18T14:30:35.9876894Z 2021-05-18T14:30:35.9890637Z checking for file ‘/tmp/RtmptnniUf/remotes73ab1029c373/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-18T14:30:35.9918506Z 2021-05-18T14:30:35.9920466Z ✔ checking for file ‘/tmp/RtmptnniUf/remotes73ab1029c373/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-18T14:30:36.0041181Z 2021-05-18T14:30:36.0041906Z 2021-05-18T14:30:36.0042909Z ─ preparing ‘ghtravis’: 2021-05-18T14:30:36.0043255Z 2021-05-18T14:30:36.0043604Z 2021-05-18T14:30:36.0140736Z checking DESCRIPTION meta-information ... 2021-05-18T14:30:36.0170929Z 2021-05-18T14:30:36.0173339Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:30:36.0661868Z 2021-05-18T14:30:36.0728227Z 2021-05-18T14:30:36.0731614Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:30:36.0741246Z 2021-05-18T14:30:36.0768895Z 2021-05-18T14:30:36.0771756Z ─ checking for empty or unneeded directories 2021-05-18T14:30:36.0775708Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:30:36.0864346Z 2021-05-18T14:30:36.0894331Z 2021-05-18T14:30:36.0896799Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-18T14:30:36.1203703Z 2021-05-18T14:30:36.1212429Z 2021-05-18T14:30:36.1217089Z 2021-05-18T14:30:36.1594575Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:30:36.1595687Z (as ‘lib’ is unspecified) 2021-05-18T14:30:36.4574269Z * installing *source* package ‘ghtravis’ ... 2021-05-18T14:30:36.4581789Z ** using staged installation 2021-05-18T14:30:36.4791726Z ** R 2021-05-18T14:30:36.4903491Z ** inst 2021-05-18T14:30:36.4916088Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:30:38.2910603Z ** help 2021-05-18T14:30:38.3591175Z *** installing help indices 2021-05-18T14:30:38.4145495Z ** building package indices 2021-05-18T14:30:38.6896784Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:30:39.6266652Z ** testing if installed package can be loaded from final location 2021-05-18T14:30:40.5773453Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:30:40.5784046Z * DONE (ghtravis) 2021-05-18T14:30:40.5879293Z Using github PAT from envvar GITHUB_PAT 2021-05-18T14:30:40.7618155Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-18T14:30:41.7258468Z 2021-05-18T14:30:41.7260487Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-18T14:30:41.7262006Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-18T14:30:41.7263558Z generics (NA -> 0.1.0) [CRAN] 2021-05-18T14:30:41.7264608Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-18T14:30:41.7265639Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-18T14:30:41.7267993Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-18T14:30:41.7270648Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:30:41.7271847Z (as ‘lib’ is unspecified) 2021-05-18T14:30:59.1632228Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-18T14:30:59.4097091Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-18T14:30:59.4114246Z ================================================== 2021-05-18T14:30:59.4114790Z downloaded 89 KB 2021-05-18T14:30:59.4115103Z 2021-05-18T14:30:59.4156553Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-18T14:30:59.6587263Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-18T14:30:59.6613347Z ================================================== 2021-05-18T14:30:59.6613915Z downloaded 116 KB 2021-05-18T14:30:59.6614231Z 2021-05-18T14:30:59.6653301Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-18T14:30:59.8140596Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-18T14:30:59.8163125Z ================================================== 2021-05-18T14:30:59.8164001Z downloaded 195 KB 2021-05-18T14:30:59.8164550Z 2021-05-18T14:30:59.8203742Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-18T14:31:00.0571014Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-18T14:31:00.0679190Z ================================================== 2021-05-18T14:31:00.0680211Z downloaded 932 KB 2021-05-18T14:31:00.0680782Z 2021-05-18T14:31:00.0715628Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-18T14:31:00.3085281Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-18T14:31:00.3534605Z ================================================== 2021-05-18T14:31:00.3535768Z downloaded 690 KB 2021-05-18T14:31:00.3536699Z 2021-05-18T14:31:00.7002100Z * installing *source* package ‘tidyselect’ ... 2021-05-18T14:31:00.7036774Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:00.7038018Z ** using staged installation 2021-05-18T14:31:00.7249045Z ** R 2021-05-18T14:31:00.7371463Z ** inst 2021-05-18T14:31:00.7389843Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:02.0809987Z ** help 2021-05-18T14:31:02.1463232Z *** installing help indices 2021-05-18T14:31:02.1975441Z ** building package indices 2021-05-18T14:31:02.4755587Z ** installing vignettes 2021-05-18T14:31:02.4820935Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:02.8078201Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:03.1260129Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:03.1291354Z * DONE (tidyselect) 2021-05-18T14:31:03.4806764Z * installing *source* package ‘generics’ ... 2021-05-18T14:31:03.4843823Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:03.4845119Z ** using staged installation 2021-05-18T14:31:03.5020858Z ** R 2021-05-18T14:31:03.5094671Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:03.9052340Z ** help 2021-05-18T14:31:04.0576606Z *** installing help indices 2021-05-18T14:31:04.1159336Z ** building package indices 2021-05-18T14:31:04.4145779Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:04.6518775Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:04.8824153Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:04.8831148Z * DONE (generics) 2021-05-18T14:31:05.2457328Z * installing *source* package ‘cpp11’ ... 2021-05-18T14:31:05.2509914Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:05.2511259Z ** using staged installation 2021-05-18T14:31:05.2709780Z ** R 2021-05-18T14:31:05.2763818Z ** inst 2021-05-18T14:31:05.2802475Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:05.8184966Z ** help 2021-05-18T14:31:05.8417966Z *** installing help indices 2021-05-18T14:31:05.8644297Z ** building package indices 2021-05-18T14:31:06.0928252Z ** installing vignettes 2021-05-18T14:31:06.0997477Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:06.3186522Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:06.5349460Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:06.5360988Z * DONE (cpp11) 2021-05-18T14:31:07.1912460Z * installing *source* package ‘dplyr’ ... 2021-05-18T14:31:07.2059421Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:07.2060828Z ** using staged installation 2021-05-18T14:31:07.2346372Z ** libs 2021-05-18T14:31:07.2402650Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-18T14:31:07.4236600Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-18T14:31:07.6306092Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-18T14:31:07.7990928Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-18T14:31:08.5018552Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-18T14:31:08.6330029Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-18T14:31:08.7820640Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-18T14:31:08.9297566Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-18T14:31:09.1027901Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-18T14:31:09.2577543Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-18T14:31:09.3807455Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-18T14:31:09.5881139Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:31:09.6681235Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-18T14:31:09.6703909Z ** R 2021-05-18T14:31:09.7262797Z ** data 2021-05-18T14:31:09.7270869Z *** moving datasets to lazyload DB 2021-05-18T14:31:09.8461070Z ** inst 2021-05-18T14:31:09.8496361Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:16.2757042Z ** help 2021-05-18T14:31:16.9315400Z *** installing help indices 2021-05-18T14:31:17.2449920Z *** copying figures 2021-05-18T14:31:17.2457540Z ** building package indices 2021-05-18T14:31:17.7128157Z ** installing vignettes 2021-05-18T14:31:17.7304132Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:18.3449892Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:31:18.3707713Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:19.0992861Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:19.1059323Z * DONE (dplyr) 2021-05-18T14:31:19.6031231Z * installing *source* package ‘tidyr’ ... 2021-05-18T14:31:19.6125464Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:19.6127833Z ** using staged installation 2021-05-18T14:31:19.6368111Z ** libs 2021-05-18T14:31:19.6437368Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-18T14:31:20.9631077Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-18T14:31:21.4987157Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-18T14:31:23.5891297Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-18T14:31:25.3230675Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:31:25.4103210Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-18T14:31:25.4130074Z ** R 2021-05-18T14:31:25.4330812Z ** data 2021-05-18T14:31:25.4345378Z *** moving datasets to lazyload DB 2021-05-18T14:31:25.6574444Z ** inst 2021-05-18T14:31:25.6601042Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:28.0209446Z ** help 2021-05-18T14:31:28.1697157Z *** installing help indices 2021-05-18T14:31:28.2852214Z *** copying figures 2021-05-18T14:31:28.2861082Z ** building package indices 2021-05-18T14:31:28.6169554Z ** installing vignettes 2021-05-18T14:31:28.6295475Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:29.2822291Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:31:29.3042170Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:29.9481717Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:29.9499651Z * DONE (tidyr) 2021-05-18T14:31:29.9612905Z 2021-05-18T14:31:29.9613928Z The downloaded source packages are in 2021-05-18T14:31:29.9615438Z ‘/tmp/RtmptnniUf/downloaded_packages’ 2021-05-18T14:31:30.1903656Z 2021-05-18T14:31:30.1921683Z checking for file ‘/tmp/RtmptnniUf/remotes73ab1db84c94/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-18T14:31:30.1944198Z 2021-05-18T14:31:30.1947810Z ✔ checking for file ‘/tmp/RtmptnniUf/remotes73ab1db84c94/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-18T14:31:30.2031931Z 2021-05-18T14:31:30.2032782Z 2021-05-18T14:31:30.2033748Z ─ preparing ‘aghast’: 2021-05-18T14:31:30.2034103Z 2021-05-18T14:31:30.2034437Z 2021-05-18T14:31:30.2166042Z checking DESCRIPTION meta-information ... 2021-05-18T14:31:30.2166675Z 2021-05-18T14:31:30.2167505Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:31:30.2551088Z 2021-05-18T14:31:30.2551699Z 2021-05-18T14:31:30.2553171Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:31:30.2554043Z 2021-05-18T14:31:30.2555881Z 2021-05-18T14:31:30.2556861Z ─ checking for empty or unneeded directories 2021-05-18T14:31:30.2557801Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-18T14:31:30.2588200Z 2021-05-18T14:31:30.2614463Z 2021-05-18T14:31:30.2616615Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-18T14:31:30.2737281Z 2021-05-18T14:31:30.2740272Z 2021-05-18T14:31:30.2741801Z 2021-05-18T14:31:30.2828909Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:31:30.2829870Z (as ‘lib’ is unspecified) 2021-05-18T14:31:30.5415611Z * installing *source* package ‘aghast’ ... 2021-05-18T14:31:30.5422330Z ** using staged installation 2021-05-18T14:31:30.5635355Z ** R 2021-05-18T14:31:30.5706814Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:31.1718475Z ** help 2021-05-18T14:31:31.2094383Z *** installing help indices 2021-05-18T14:31:31.2405994Z ** building package indices 2021-05-18T14:31:31.4983926Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:31.7345457Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:31.9567206Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:31.9574763Z * DONE (aghast) 2021-05-18T14:31:31.9684819Z Installing 1 packages: covr 2021-05-18T14:31:31.9695584Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:31:31.9696547Z (as ‘lib’ is unspecified) 2021-05-18T14:31:49.7507268Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-18T14:31:49.7508146Z 2021-05-18T14:31:49.7520177Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-18T14:31:50.1308137Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-18T14:31:50.1329639Z ================================================== 2021-05-18T14:31:50.1330211Z downloaded 81 KB 2021-05-18T14:31:50.1330524Z 2021-05-18T14:31:50.1370592Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-18T14:31:50.5122480Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-18T14:31:50.5137179Z ================================================== 2021-05-18T14:31:50.5137735Z downloaded 89 KB 2021-05-18T14:31:50.5138035Z 2021-05-18T14:31:50.5202189Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-18T14:31:50.7902338Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-18T14:31:50.7922386Z ================================================== 2021-05-18T14:31:50.7922960Z downloaded 144 KB 2021-05-18T14:31:50.7923277Z 2021-05-18T14:31:51.1257575Z * installing *source* package ‘lazyeval’ ... 2021-05-18T14:31:51.1294415Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:51.1297701Z ** using staged installation 2021-05-18T14:31:51.1467025Z ** libs 2021-05-18T14:31:51.1527582Z 2021-05-18T14:31:51.1529497Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-18T14:31:51.2272794Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:31:51.2734331Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-18T14:31:51.3491546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-18T14:31:51.4430988Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-18T14:31:51.5247225Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-18T14:31:51.6179109Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:31:51.6491413Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-18T14:31:51.6495835Z ** R 2021-05-18T14:31:51.6579646Z ** inst 2021-05-18T14:31:51.6594251Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:52.3519416Z ** help 2021-05-18T14:31:52.4219239Z *** installing help indices 2021-05-18T14:31:52.4817924Z ** building package indices 2021-05-18T14:31:52.7691245Z ** installing vignettes 2021-05-18T14:31:52.7766765Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:53.0061652Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:31:53.0306129Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:53.2739943Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:53.2750389Z * DONE (lazyeval) 2021-05-18T14:31:53.5893154Z * installing *source* package ‘rex’ ... 2021-05-18T14:31:53.5920851Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:53.5923472Z ** using staged installation 2021-05-18T14:31:53.6101623Z ** R 2021-05-18T14:31:53.6170438Z ** inst 2021-05-18T14:31:53.6187156Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:54.3158697Z ** help 2021-05-18T14:31:54.3836853Z *** installing help indices 2021-05-18T14:31:54.4360382Z ** building package indices 2021-05-18T14:31:54.7049432Z ** installing vignettes 2021-05-18T14:31:54.7174141Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:54.9583227Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:55.2097743Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:55.2107009Z * DONE (rex) 2021-05-18T14:31:55.7131672Z * installing *source* package ‘covr’ ... 2021-05-18T14:31:55.7203335Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-18T14:31:55.7204491Z ** using staged installation 2021-05-18T14:31:55.7548740Z ** libs 2021-05-18T14:31:55.7604809Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-18T14:31:55.8311424Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:31:55.8502171Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-18T14:31:55.8518688Z ** R 2021-05-18T14:31:55.8707045Z ** inst 2021-05-18T14:31:55.8736401Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:31:57.7760171Z ** help 2021-05-18T14:31:57.8520081Z *** installing help indices 2021-05-18T14:31:57.9145701Z *** copying figures 2021-05-18T14:31:57.9148082Z ** building package indices 2021-05-18T14:31:58.2044672Z ** installing vignettes 2021-05-18T14:31:58.2116490Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:31:58.4641552Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:31:58.4854128Z ** testing if installed package can be loaded from final location 2021-05-18T14:31:58.7649955Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:31:58.7667209Z * DONE (covr) 2021-05-18T14:31:58.7791389Z 2021-05-18T14:31:58.7792188Z The downloaded source packages are in 2021-05-18T14:31:58.7793852Z ‘/tmp/RtmptnniUf/downloaded_packages’ 2021-05-18T14:31:58.7955805Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-18T14:31:58.7956522Z Rscript -e "tic::before_install()" 2021-05-18T14:31:58.8014923Z shell: /usr/bin/bash -e {0} 2021-05-18T14:31:58.8015332Z env: 2021-05-18T14:31:58.8015800Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:31:58.8016284Z TIC_DEPLOY_KEY: 2021-05-18T14:31:58.8017119Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:31:58.8018759Z GITHUB_PAT: *** 2021-05-18T14:31:58.8020362Z COVERALLS_TOKEN: *** 2021-05-18T14:31:58.8020921Z continue-on-error: true 2021-05-18T14:31:58.8021561Z VDIFFR_RUN_TESTS: 2021-05-18T14:31:58.8022103Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:31:58.8022644Z TZ: UTC 2021-05-18T14:31:58.8023018Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:31:58.8023437Z NOT_CRAN: true 2021-05-18T14:31:58.8023819Z ##[endgroup] 2021-05-18T14:31:59.1608134Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:31:59.3399806Z Running before_install: step_install_remote_binaries() 2021-05-18T14:32:00.1206538Z Installing mmand binaries 2021-05-18T14:32:00.1224651Z [1] "neuroconductor/mmand" 2021-05-18T14:32:00.3832080Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:32:00.3842018Z Installing oro.nifti binaries 2021-05-18T14:32:00.3851434Z [1] "neuroconductor/oro.nifti" 2021-05-18T14:32:00.5277806Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:32:00.5291835Z Installing neurobase binaries 2021-05-18T14:32:00.5301647Z [1] "neuroconductor/neurobase" 2021-05-18T14:32:00.7212878Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:32:00.7222965Z Installing fslr binaries 2021-05-18T14:32:00.7233295Z [1] "neuroconductor/fslr" 2021-05-18T14:32:00.9220037Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-18T14:32:00.9380100Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-18T14:32:00.9381024Z remotes::install_deps(dependencies = TRUE) 2021-05-18T14:32:00.9381676Z remotes::install_cran("rcmdcheck") 2021-05-18T14:32:00.9382282Z remotes::install_cran("markdown") 2021-05-18T14:32:00.9390170Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:32:00.9390628Z env: 2021-05-18T14:32:00.9391112Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:32:00.9391613Z TIC_DEPLOY_KEY: 2021-05-18T14:32:00.9392566Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:32:00.9394379Z GITHUB_PAT: *** 2021-05-18T14:32:00.9395341Z COVERALLS_TOKEN: *** 2021-05-18T14:32:00.9395879Z continue-on-error: true 2021-05-18T14:32:00.9396378Z VDIFFR_RUN_TESTS: 2021-05-18T14:32:00.9396923Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:32:00.9397412Z TZ: UTC 2021-05-18T14:32:00.9397821Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:32:00.9398306Z NOT_CRAN: true 2021-05-18T14:32:00.9398726Z ##[endgroup] 2021-05-18T14:32:24.7466078Z mmand (NA -> 4b29cf309...) [GitHub] 2021-05-18T14:32:24.7467720Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-18T14:32:24.7469222Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-18T14:32:24.7470247Z fslr (NA -> 2836c3181...) [GitHub] 2021-05-18T14:32:24.7471239Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-18T14:32:24.7472213Z caTools (NA -> 1.18.2 ) [CRAN] 2021-05-18T14:32:24.7473276Z gtools (NA -> 3.8.2 ) [CRAN] 2021-05-18T14:32:24.7474279Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-18T14:32:24.7475250Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-18T14:32:24.7476209Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-18T14:32:24.7477162Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-18T14:32:24.7479016Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-18T14:32:24.7480245Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-18T14:32:24.7481613Z gplots (NA -> 3.1.1 ) [CRAN] 2021-05-18T14:32:24.7482846Z ROCR (NA -> 1.0-11 ) [CRAN] 2021-05-18T14:32:25.2797030Z Downloading GitHub repo neuroconductor/mmand@4b29cf309724e651dfd7469311119464fdd0d0fc 2021-05-18T14:32:27.2558872Z 2021-05-18T14:32:27.5076982Z 2021-05-18T14:32:27.5083326Z checking for file ‘/tmp/RtmpDRO57Y/remotesd5f678a79885/neuroconductor-mmand-4b29cf3/DESCRIPTION’ ... 2021-05-18T14:32:27.5158048Z 2021-05-18T14:32:27.5160895Z ✔ checking for file ‘/tmp/RtmpDRO57Y/remotesd5f678a79885/neuroconductor-mmand-4b29cf3/DESCRIPTION’ 2021-05-18T14:32:27.5241455Z 2021-05-18T14:32:27.5395706Z 2021-05-18T14:32:27.5398079Z ─ preparing ‘mmand’: 2021-05-18T14:32:27.5416506Z 2021-05-18T14:32:27.5469662Z 2021-05-18T14:32:27.5472042Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:32:27.5514918Z ─ cleaning src 2021-05-18T14:32:27.5549402Z ─ running ‘cleanup’ 2021-05-18T14:32:27.5811005Z 2021-05-18T14:32:27.5842549Z 2021-05-18T14:32:27.5845419Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:32:27.6289347Z 2021-05-18T14:32:27.6320676Z 2021-05-18T14:32:27.6323323Z ─ checking for empty or unneeded directories 2021-05-18T14:32:27.6398516Z 2021-05-18T14:32:27.6429295Z 2021-05-18T14:32:27.6431568Z ─ building ‘mmand_1.6.0.tar.gz’ 2021-05-18T14:32:28.1463842Z 2021-05-18T14:32:28.1466874Z 2021-05-18T14:32:28.1468497Z 2021-05-18T14:32:28.1691832Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:32:28.1693304Z (as ‘lib’ is unspecified) 2021-05-18T14:32:28.7237350Z * installing *source* package ‘mmand’ ... 2021-05-18T14:32:28.7242366Z ** using staged installation 2021-05-18T14:32:29.0402146Z 2021-05-18T14:32:29.1011555Z checking whether the C++ compiler works... yes 2021-05-18T14:32:29.1013017Z checking for C++ compiler default output file name... a.out 2021-05-18T14:32:29.1616394Z checking for suffix of executables... 2021-05-18T14:32:29.2403969Z checking whether we are cross compiling... no 2021-05-18T14:32:29.2756636Z checking for suffix of object files... o 2021-05-18T14:32:29.3031464Z checking whether we are using the GNU C++ compiler... yes 2021-05-18T14:32:29.3302230Z checking whether g++ -std=gnu++14 accepts -g... yes 2021-05-18T14:32:29.4247155Z checking for OpenMP flag of C++ compiler... -fopenmp 2021-05-18T14:32:29.4471941Z configure: creating ./config.status 2021-05-18T14:32:29.5410084Z config.status: creating src/Makevars 2021-05-18T14:32:29.5987006Z ** libs 2021-05-18T14:32:29.6048066Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Array.cpp -o Array.o 2021-05-18T14:32:34.5134614Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Componenter.cpp -o Componenter.o 2021-05-18T14:32:41.9969350Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Distancer.cpp -o Distancer.o 2021-05-18T14:32:46.3063112Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Kernel.cpp -o Kernel.o 2021-05-18T14:32:50.6907555Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Morpher.cpp -o Morpher.o 2021-05-18T14:32:55.1158294Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Resampler.cpp -o Resampler.o 2021-05-18T14:32:59.8987438Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c main.cpp -o main.o 2021-05-18T14:33:08.7058366Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mmand.so Array.o Componenter.o Distancer.o Kernel.o Morpher.o Resampler.o main.o -fopenmp -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:33:08.8755894Z installing to /home/runner/work/_temp/Library/00LOCK-mmand/00new/mmand/libs 2021-05-18T14:33:08.8872637Z ** R 2021-05-18T14:33:08.8960874Z ** inst 2021-05-18T14:33:08.8999767Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:33:09.9623990Z ** help 2021-05-18T14:33:10.0248862Z *** installing help indices 2021-05-18T14:33:10.0753584Z ** building package indices 2021-05-18T14:33:10.3557218Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:33:10.7185986Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:33:10.7475168Z ** testing if installed package can be loaded from final location 2021-05-18T14:33:11.0931139Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:33:11.0944671Z * DONE (mmand) 2021-05-18T14:33:11.6144050Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-18T14:33:13.7397553Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-18T14:33:13.7398830Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-18T14:33:13.7399768Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-18T14:33:13.7401027Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-18T14:33:13.7402026Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-18T14:33:13.7402950Z rticles (NA -> 0.19 ) [CRAN] 2021-05-18T14:33:13.7403869Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-18T14:33:13.7404768Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-18T14:33:14.2274520Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-18T14:33:15.3849205Z 2021-05-18T14:33:15.6285695Z 2021-05-18T14:33:15.6300786Z checking for file ‘/tmp/RtmpDRO57Y/remotesd5f6507f2a8e/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-18T14:33:15.6340071Z 2021-05-18T14:33:15.6342243Z ✔ checking for file ‘/tmp/RtmpDRO57Y/remotesd5f6507f2a8e/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-18T14:33:15.6554549Z 2021-05-18T14:33:15.6555615Z 2021-05-18T14:33:15.6557038Z ─ preparing ‘RNifti’: 2021-05-18T14:33:15.6557416Z 2021-05-18T14:33:15.6730327Z 2021-05-18T14:33:15.6731782Z checking DESCRIPTION meta-information ... 2021-05-18T14:33:15.6750118Z 2021-05-18T14:33:15.6751156Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:33:15.6757611Z 2021-05-18T14:33:15.6789080Z 2021-05-18T14:33:15.6789942Z ─ cleaning src 2021-05-18T14:33:15.6795546Z 2021-05-18T14:33:15.6831145Z 2021-05-18T14:33:15.6832296Z ─ running ‘cleanup’ 2021-05-18T14:33:16.1770898Z 2021-05-18T14:33:16.1852863Z 2021-05-18T14:33:16.1855707Z ─ checking for LF line-endings in source and make files and shell scripts (498ms) 2021-05-18T14:33:16.2282378Z 2021-05-18T14:33:16.2539131Z 2021-05-18T14:33:16.2541781Z ─ checking for empty or unneeded directories 2021-05-18T14:33:16.2552826Z 2021-05-18T14:33:16.2582630Z 2021-05-18T14:33:16.2584827Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-18T14:33:16.6263566Z 2021-05-18T14:33:16.6267007Z 2021-05-18T14:33:16.6268551Z 2021-05-18T14:33:16.6738228Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:33:16.6739755Z (as ‘lib’ is unspecified) 2021-05-18T14:33:17.1299100Z * installing *source* package ‘RNifti’ ... 2021-05-18T14:33:17.1301054Z ** using staged installation 2021-05-18T14:33:17.1537830Z ** libs 2021-05-18T14:33:17.1597422Z 2021-05-18T14:33:17.1600317Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-18T14:33:40.8823328Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-18T14:33:42.3937300Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-18T14:33:42.5058319Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-18T14:33:42.5525340Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-18T14:33:42.7189669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-18T14:33:43.3490924Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-18T14:33:43.4020971Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-18T14:33:43.5629802Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-18T14:33:43.7603538Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-18T14:33:43.9561060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-18T14:33:44.2777767Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-18T14:33:44.4206542Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-18T14:33:45.0628781Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-18T14:33:45.1881118Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-18T14:33:45.5954257Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-18T14:33:45.6503542Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-18T14:33:45.7082987Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-18T14:33:45.8062481Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-18T14:33:47.2875323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-18T14:33:50.2781372Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:33:50.4996259Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-18T14:33:50.5157918Z ** R 2021-05-18T14:33:50.5255631Z ** inst 2021-05-18T14:33:50.5292577Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:33:51.5900068Z ** help 2021-05-18T14:33:51.6522627Z *** installing help indices 2021-05-18T14:33:51.6974784Z ** building package indices 2021-05-18T14:33:51.9819148Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:33:52.3180863Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:33:52.3462383Z ** testing if installed package can be loaded from final location 2021-05-18T14:33:52.6965395Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:33:52.6978013Z * DONE (RNifti) 2021-05-18T14:33:52.7190867Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-18T14:33:52.7200059Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:33:52.7201399Z (as ‘lib’ is unspecified) 2021-05-18T14:34:11.4671148Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-18T14:34:11.7170348Z Content type 'application/x-tar' length 7843 bytes 2021-05-18T14:34:11.7171972Z ================================================== 2021-05-18T14:34:11.7172850Z downloaded 7843 bytes 2021-05-18T14:34:11.7173466Z 2021-05-18T14:34:11.7208635Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-18T14:34:12.8864730Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-18T14:34:12.8866019Z ================================================== 2021-05-18T14:34:12.8866750Z downloaded 28 KB 2021-05-18T14:34:12.8867204Z 2021-05-18T14:34:12.8904589Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-18T14:34:13.1452331Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-18T14:34:13.1457019Z ================================================== 2021-05-18T14:34:13.1457900Z downloaded 70 KB 2021-05-18T14:34:13.1458471Z 2021-05-18T14:34:13.1497382Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-18T14:34:13.4141902Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-18T14:34:13.4358587Z ================================================== 2021-05-18T14:34:13.4359523Z downloaded 3.1 MB 2021-05-18T14:34:13.4360119Z 2021-05-18T14:34:13.4460049Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-18T14:34:14.8230953Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-18T14:34:14.8362774Z ================================================== 2021-05-18T14:34:14.8363752Z downloaded 1.6 MB 2021-05-18T14:34:14.8364329Z 2021-05-18T14:34:14.8409661Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-18T14:34:15.0805745Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-18T14:34:15.0807344Z ================================================== 2021-05-18T14:34:15.0808185Z downloaded 21 KB 2021-05-18T14:34:15.0809173Z 2021-05-18T14:34:15.0847680Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-18T14:34:15.4613242Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-18T14:34:15.4614887Z ================================================== 2021-05-18T14:34:15.4615830Z downloaded 10 KB 2021-05-18T14:34:15.4616189Z 2021-05-18T14:34:15.7257091Z * installing *source* package ‘base64enc’ ... 2021-05-18T14:34:15.7271108Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:15.7275622Z ** using staged installation 2021-05-18T14:34:15.7421419Z ** libs 2021-05-18T14:34:15.7485772Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-18T14:34:15.9001753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-18T14:34:15.9997489Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-18T14:34:16.0953324Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:34:16.1250632Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-18T14:34:16.1266663Z ** R 2021-05-18T14:34:16.1308024Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:16.4609904Z ** help 2021-05-18T14:34:16.4859624Z *** installing help indices 2021-05-18T14:34:16.5066702Z ** building package indices 2021-05-18T14:34:16.7481118Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:16.9791712Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:34:17.0005199Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:17.2095100Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:17.2100884Z * DONE (base64enc) 2021-05-18T14:34:17.4909562Z * installing *source* package ‘tinytex’ ... 2021-05-18T14:34:17.4924718Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:17.4925982Z ** using staged installation 2021-05-18T14:34:17.5171651Z ** R 2021-05-18T14:34:17.5299762Z ** inst 2021-05-18T14:34:17.5309491Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:18.5010814Z ** help 2021-05-18T14:34:18.5420050Z *** installing help indices 2021-05-18T14:34:18.5771564Z ** building package indices 2021-05-18T14:34:18.8256783Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:19.0640730Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:19.3256905Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:19.3270468Z * DONE (tinytex) 2021-05-18T14:34:19.6039267Z * installing *source* package ‘abind’ ... 2021-05-18T14:34:19.6053873Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:19.6055141Z ** using staged installation 2021-05-18T14:34:19.6192355Z ** R 2021-05-18T14:34:19.6256623Z ** inst 2021-05-18T14:34:19.6267659Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:20.3782299Z ** help 2021-05-18T14:34:20.4128100Z *** installing help indices 2021-05-18T14:34:20.4427367Z ** building package indices 2021-05-18T14:34:20.7015046Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:20.9144586Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:21.1536276Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:21.1545507Z * DONE (abind) 2021-05-18T14:34:21.4117542Z * installing *source* package ‘bitops’ ... 2021-05-18T14:34:21.4134310Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:21.4138661Z ** using staged installation 2021-05-18T14:34:21.4264713Z ** libs 2021-05-18T14:34:21.4323263Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-18T14:34:21.6774555Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-18T14:34:21.7521802Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:34:21.8080819Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:34:21.8267117Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-18T14:34:21.8289401Z ** R 2021-05-18T14:34:21.8316701Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:22.1232499Z ** help 2021-05-18T14:34:22.1643217Z *** installing help indices 2021-05-18T14:34:22.1879972Z ** building package indices 2021-05-18T14:34:22.4233634Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:22.6416416Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:34:22.6632204Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:22.8833229Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:22.8835059Z * DONE (bitops) 2021-05-18T14:34:23.2033809Z * installing *source* package ‘htmltools’ ... 2021-05-18T14:34:23.2063012Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:23.2064179Z ** using staged installation 2021-05-18T14:34:23.2257961Z ** libs 2021-05-18T14:34:23.2309993Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:34:23.2889457Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-18T14:34:23.4280707Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:34:23.4570974Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-18T14:34:23.4572512Z ** R 2021-05-18T14:34:23.4734312Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:25.4792291Z ** help 2021-05-18T14:34:25.5816965Z *** installing help indices 2021-05-18T14:34:25.6552823Z ** building package indices 2021-05-18T14:34:26.0010624Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:26.2551652Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:34:26.2758991Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:26.5587656Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:26.5605242Z * DONE (htmltools) 2021-05-18T14:34:27.6472033Z * installing *source* package ‘rmarkdown’ ... 2021-05-18T14:34:27.6807331Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:27.6809134Z ** using staged installation 2021-05-18T14:34:27.7193142Z ** R 2021-05-18T14:34:27.7682026Z ** inst 2021-05-18T14:34:27.7975403Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:32.4910747Z ** help 2021-05-18T14:34:32.7362966Z *** installing help indices 2021-05-18T14:34:32.9243279Z *** copying figures 2021-05-18T14:34:32.9247538Z ** building package indices 2021-05-18T14:34:33.2929632Z ** installing vignettes 2021-05-18T14:34:33.3019836Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:33.6086542Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:33.9884677Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:33.9950099Z * DONE (rmarkdown) 2021-05-18T14:34:34.7770379Z * installing *source* package ‘rticles’ ... 2021-05-18T14:34:34.7965987Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-18T14:34:34.7967370Z ** using staged installation 2021-05-18T14:34:34.8258075Z ** R 2021-05-18T14:34:34.8338394Z ** inst 2021-05-18T14:34:34.8629547Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:35.4415906Z ** help 2021-05-18T14:34:35.4867415Z *** installing help indices 2021-05-18T14:34:35.5346222Z ** building package indices 2021-05-18T14:34:35.7867448Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:36.1172859Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:36.4268516Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:36.4312919Z * DONE (rticles) 2021-05-18T14:34:36.4540794Z 2021-05-18T14:34:36.4542231Z The downloaded source packages are in 2021-05-18T14:34:36.4543925Z ‘/tmp/RtmpDRO57Y/downloaded_packages’ 2021-05-18T14:34:36.6867556Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-18T14:34:36.6868957Z Use `force = TRUE` to force installation 2021-05-18T14:34:36.9169796Z 2021-05-18T14:34:36.9185451Z checking for file ‘/tmp/RtmpDRO57Y/remotesd5f674f1820e/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-18T14:34:36.9225842Z 2021-05-18T14:34:36.9228336Z ✔ checking for file ‘/tmp/RtmpDRO57Y/remotesd5f674f1820e/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-18T14:34:36.9529741Z 2021-05-18T14:34:36.9564048Z 2021-05-18T14:34:36.9565653Z ─ preparing ‘oro.nifti’: 2021-05-18T14:34:36.9566359Z 2021-05-18T14:34:36.9566972Z 2021-05-18T14:34:36.9711518Z checking DESCRIPTION meta-information ... 2021-05-18T14:34:36.9748726Z 2021-05-18T14:34:36.9750990Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:34:37.1573212Z 2021-05-18T14:34:37.1645665Z 2021-05-18T14:34:37.1649359Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:34:37.1676307Z 2021-05-18T14:34:37.1708089Z 2021-05-18T14:34:37.1710822Z ─ checking for empty or unneeded directories 2021-05-18T14:34:37.1715105Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-18T14:34:37.1719061Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-18T14:34:37.1817099Z 2021-05-18T14:34:37.1851671Z 2021-05-18T14:34:37.1854042Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-18T14:34:37.8616665Z 2021-05-18T14:34:37.8620061Z 2021-05-18T14:34:37.8621634Z 2021-05-18T14:34:37.8876154Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:34:37.8877664Z (as ‘lib’ is unspecified) 2021-05-18T14:34:38.6186379Z * installing *source* package ‘oro.nifti’ ... 2021-05-18T14:34:38.6190260Z ** using staged installation 2021-05-18T14:34:38.6442455Z ** R 2021-05-18T14:34:38.7053914Z ** demo 2021-05-18T14:34:38.7065440Z ** inst 2021-05-18T14:34:38.7164632Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:34:48.2462236Z 2021-05-18T14:34:48.2464010Z ** help 2021-05-18T14:34:48.2465461Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-18T14:34:48.7312107Z *** installing help indices 2021-05-18T14:34:49.1131979Z ** building package indices 2021-05-18T14:34:49.6748541Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:34:50.4356191Z ** testing if installed package can be loaded from final location 2021-05-18T14:34:51.3103114Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:34:51.3265690Z * DONE (oro.nifti) 2021-05-18T14:34:51.8591634Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-18T14:34:54.9790349Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-18T14:34:54.9791684Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-18T14:34:54.9792732Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-18T14:34:54.9794315Z Installing 4 packages: R.methodsS3, R.oo, R.utils, matrixStats 2021-05-18T14:34:54.9795475Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-18T14:34:54.9805891Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:34:54.9807321Z (as ‘lib’ is unspecified) 2021-05-18T14:35:13.7039932Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-18T14:35:14.0776204Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-18T14:35:14.0777512Z ================================================== 2021-05-18T14:35:14.0778137Z downloaded 23 KB 2021-05-18T14:35:14.0778581Z 2021-05-18T14:35:14.0820828Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-18T14:35:14.4870300Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-18T14:35:14.4926965Z ================================================== 2021-05-18T14:35:14.4927740Z downloaded 373 KB 2021-05-18T14:35:14.4928184Z 2021-05-18T14:35:14.5003927Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-18T14:35:15.1157289Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-18T14:35:15.1194547Z ================================================== 2021-05-18T14:35:15.1195481Z downloaded 353 KB 2021-05-18T14:35:15.1196209Z 2021-05-18T14:35:15.1239309Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-18T14:35:15.6299466Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-18T14:35:15.6318219Z ================================================== 2021-05-18T14:35:15.6318981Z downloaded 190 KB 2021-05-18T14:35:15.6319443Z 2021-05-18T14:35:15.9230768Z * installing *source* package ‘R.methodsS3’ ... 2021-05-18T14:35:15.9248297Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-18T14:35:15.9250374Z ** using staged installation 2021-05-18T14:35:15.9402657Z ** R 2021-05-18T14:35:15.9484889Z ** inst 2021-05-18T14:35:15.9495813Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:35:16.5929637Z ** help 2021-05-18T14:35:16.6369303Z *** installing help indices 2021-05-18T14:35:16.6833535Z ** building package indices 2021-05-18T14:35:16.9538797Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:35:17.1925262Z ** testing if installed package can be loaded from final location 2021-05-18T14:35:17.4301530Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:35:17.4310858Z * DONE (R.methodsS3) 2021-05-18T14:35:17.9992742Z * installing *source* package ‘matrixStats’ ... 2021-05-18T14:35:18.0145883Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-18T14:35:18.0146811Z ** using staged installation 2021-05-18T14:35:18.0554610Z ** libs 2021-05-18T14:35:18.0645802Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-18T14:35:18.1321515Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-18T14:35:18.2306953Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-18T14:35:18.3641701Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-18T14:35:18.4827658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-18T14:35:18.6594268Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-18T14:35:20.3097566Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-18T14:35:21.8803462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-18T14:35:24.0759232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-18T14:35:24.0820297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-18T14:35:24.1690776Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-18T14:35:24.4447596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-18T14:35:24.6254533Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-18T14:35:24.8118286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-18T14:35:24.8953294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-18T14:35:26.6663401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-18T14:35:27.9695606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-18T14:35:30.5653985Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-18T14:35:31.6563192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-18T14:35:32.7403387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-18T14:35:35.3430891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-18T14:35:35.5053449Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-18T14:35:36.7206799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-18T14:35:37.4780772Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-18T14:35:39.4163820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-18T14:35:39.9464203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-18T14:35:41.9367347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-18T14:35:57.0588199Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-18T14:35:57.7635887Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-18T14:35:58.5873379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-18T14:35:58.7418192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-18T14:35:58.8862930Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-18T14:35:59.2032568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-18T14:35:59.4294480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-18T14:35:59.9560541Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-18T14:37:09.0953446Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:37:09.2057483Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-18T14:37:09.2211871Z ** R 2021-05-18T14:37:09.2553116Z ** inst 2021-05-18T14:37:09.2609572Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:37:11.1801191Z ** help 2021-05-18T14:37:11.3529655Z *** installing help indices 2021-05-18T14:37:11.4645264Z ** building package indices 2021-05-18T14:37:11.8049916Z ** installing vignettes 2021-05-18T14:37:11.8111156Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:37:12.0372308Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:37:12.0639398Z ** testing if installed package can be loaded from final location 2021-05-18T14:37:12.3089939Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:37:12.3091511Z * DONE (matrixStats) 2021-05-18T14:37:12.7999022Z * installing *source* package ‘R.oo’ ... 2021-05-18T14:37:12.8088345Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-18T14:37:12.8089561Z ** using staged installation 2021-05-18T14:37:12.8258595Z ** R 2021-05-18T14:37:12.8668202Z ** inst 2021-05-18T14:37:12.8687541Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:37:16.8326444Z ** help 2021-05-18T14:37:17.4798801Z *** installing help indices 2021-05-18T14:37:17.9626176Z ** building package indices 2021-05-18T14:37:18.6138245Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:37:18.8823094Z ** testing if installed package can be loaded from final location 2021-05-18T14:37:19.2532366Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:37:19.2587750Z * DONE (R.oo) 2021-05-18T14:37:19.9611435Z * installing *source* package ‘R.utils’ ... 2021-05-18T14:37:19.9764730Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-18T14:37:19.9766189Z ** using staged installation 2021-05-18T14:37:19.9949094Z ** R 2021-05-18T14:37:20.0834697Z ** inst 2021-05-18T14:37:20.0836478Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:37:28.5327309Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-18T14:37:28.5329628Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-18T14:37:28.5331709Z ** help 2021-05-18T14:37:29.6705818Z *** installing help indices 2021-05-18T14:37:30.3364878Z ** building package indices 2021-05-18T14:37:31.3165643Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:37:31.6309785Z ** testing if installed package can be loaded from final location 2021-05-18T14:37:32.1370182Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:37:32.1449504Z * DONE (R.utils) 2021-05-18T14:37:32.1614589Z 2021-05-18T14:37:32.1616038Z The downloaded source packages are in 2021-05-18T14:37:32.1617745Z ‘/tmp/RtmpDRO57Y/downloaded_packages’ 2021-05-18T14:37:32.3975141Z 2021-05-18T14:37:32.3982083Z checking for file ‘/tmp/RtmpDRO57Y/remotesd5f61416f2e3/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-18T14:37:32.4026612Z 2021-05-18T14:37:32.4029572Z ✔ checking for file ‘/tmp/RtmpDRO57Y/remotesd5f61416f2e3/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-18T14:37:32.4263979Z 2021-05-18T14:37:32.4298207Z 2021-05-18T14:37:32.4299864Z ─ preparing ‘neurobase’: 2021-05-18T14:37:32.4309052Z 2021-05-18T14:37:32.4310919Z 2021-05-18T14:37:32.4426959Z checking DESCRIPTION meta-information ... 2021-05-18T14:37:32.4464766Z 2021-05-18T14:37:32.4468241Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:37:32.5574478Z 2021-05-18T14:37:32.5610267Z 2021-05-18T14:37:32.5613003Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:37:32.5623435Z 2021-05-18T14:37:32.5654041Z 2021-05-18T14:37:32.5656519Z ─ checking for empty or unneeded directories 2021-05-18T14:37:32.5670970Z 2021-05-18T14:37:32.5703458Z 2021-05-18T14:37:32.5707121Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-18T14:37:32.6651579Z 2021-05-18T14:37:32.6654771Z 2021-05-18T14:37:32.6656307Z 2021-05-18T14:37:32.6786244Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:37:32.6787252Z (as ‘lib’ is unspecified) 2021-05-18T14:37:33.0868772Z * installing *source* package ‘neurobase’ ... 2021-05-18T14:37:33.0873352Z ** using staged installation 2021-05-18T14:37:33.1108994Z ** R 2021-05-18T14:37:33.1376276Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:37:36.6054045Z ** help 2021-05-18T14:37:36.8169598Z *** installing help indices 2021-05-18T14:37:36.9856021Z ** building package indices 2021-05-18T14:37:37.3534577Z ** installing vignettes 2021-05-18T14:37:37.3600491Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:37:38.2861934Z ** testing if installed package can be loaded from final location 2021-05-18T14:37:39.2271361Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:37:39.2296911Z * DONE (neurobase) 2021-05-18T14:37:39.9611431Z Downloading GitHub repo neuroconductor/fslr@2836c318184779a56162a0b4936ee42d348395a7 2021-05-18T14:37:43.0171488Z 2021-05-18T14:37:43.2459890Z 2021-05-18T14:37:43.2474131Z checking for file ‘/tmp/RtmpDRO57Y/remotesd5f6412b7045/neuroconductor-fslr-2836c31/DESCRIPTION’ ... 2021-05-18T14:37:43.2512197Z 2021-05-18T14:37:43.2519283Z ✔ checking for file ‘/tmp/RtmpDRO57Y/remotesd5f6412b7045/neuroconductor-fslr-2836c31/DESCRIPTION’ 2021-05-18T14:37:43.2812277Z 2021-05-18T14:37:43.2815314Z 2021-05-18T14:37:43.2816359Z ─ preparing ‘fslr’: 2021-05-18T14:37:43.2827293Z 2021-05-18T14:37:43.2829559Z 2021-05-18T14:37:43.2937426Z checking DESCRIPTION meta-information ... 2021-05-18T14:37:43.2979376Z 2021-05-18T14:37:43.2981566Z ✔ checking DESCRIPTION meta-information 2021-05-18T14:37:43.6151003Z 2021-05-18T14:37:43.6184324Z 2021-05-18T14:37:43.6187043Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:37:43.6196941Z 2021-05-18T14:37:43.6226042Z 2021-05-18T14:37:43.6229283Z ─ checking for empty or unneeded directories 2021-05-18T14:37:43.6271920Z 2021-05-18T14:37:43.6300820Z 2021-05-18T14:37:43.6302931Z ─ building ‘fslr_2.25.0.tar.gz’ 2021-05-18T14:37:44.6114620Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:37:44.6115144Z 2021-05-18T14:37:44.6116980Z 2021-05-18T14:37:44.6117567Z 2021-05-18T14:37:44.6124125Z (as ‘lib’ is unspecified) 2021-05-18T14:37:44.6125328Z * installing *source* package ‘fslr’ ... 2021-05-18T14:37:44.6126640Z ** using staged installation 2021-05-18T14:37:44.6127183Z ** R 2021-05-18T14:37:44.6127783Z ** inst 2021-05-18T14:37:44.6129073Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:37:47.9753321Z ** help 2021-05-18T14:37:48.4809066Z *** installing help indices 2021-05-18T14:37:48.8752414Z ** building package indices 2021-05-18T14:37:49.4561146Z ** installing vignettes 2021-05-18T14:37:49.4703243Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:37:50.4560205Z ** testing if installed package can be loaded from final location 2021-05-18T14:37:51.4833151Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:37:51.4869289Z * DONE (fslr) 2021-05-18T14:37:51.5109187Z Installing 11 packages: bitops, caTools, gtools, R.methodsS3, R.oo, RNifti, R.utils, matrixStats, abind, gplots, ROCR 2021-05-18T14:37:51.5117374Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-18T14:37:51.5118680Z (as ‘lib’ is unspecified) 2021-05-18T14:38:10.7687108Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-18T14:38:11.0237204Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-18T14:38:11.0238922Z ================================================== 2021-05-18T14:38:11.0239757Z downloaded 10 KB 2021-05-18T14:38:11.0240335Z 2021-05-18T14:38:11.0277108Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/caTools_1.18.2.tar.gz' 2021-05-18T14:38:11.2822808Z Content type 'binary/octet-stream' length 65283 bytes (63 KB) 2021-05-18T14:38:11.2832634Z ================================================== 2021-05-18T14:38:11.2833467Z downloaded 63 KB 2021-05-18T14:38:11.2834025Z 2021-05-18T14:38:11.2871649Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gtools_3.8.2.tar.gz' 2021-05-18T14:38:11.6606217Z Content type 'binary/octet-stream' length 197016 bytes (192 KB) 2021-05-18T14:38:11.6631921Z ================================================== 2021-05-18T14:38:11.6633245Z downloaded 192 KB 2021-05-18T14:38:11.6633729Z 2021-05-18T14:38:11.6678809Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-18T14:38:13.5912708Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-18T14:38:13.5914013Z ================================================== 2021-05-18T14:38:13.5914871Z downloaded 23 KB 2021-05-18T14:38:13.5956847Z 2021-05-18T14:38:13.5958698Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-18T14:38:13.9747272Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-18T14:38:13.9778443Z ================================================== 2021-05-18T14:38:13.9779354Z downloaded 373 KB 2021-05-18T14:38:13.9779903Z 2021-05-18T14:38:13.9820858Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-18T14:38:14.2381801Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-18T14:38:14.2384588Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-18T14:38:14.2387930Z In addition: Warning message: 2021-05-18T14:38:14.2388737Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-18T14:38:14.2390745Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-18T14:38:14.2392446Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-18T14:38:14.2393528Z download of package ‘RNifti’ failed 2021-05-18T14:38:14.2399088Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-18T14:38:14.5159503Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-18T14:38:14.5212132Z ================================================== 2021-05-18T14:38:14.5212681Z downloaded 353 KB 2021-05-18T14:38:14.5213175Z 2021-05-18T14:38:14.5255988Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-18T14:38:14.7667452Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-18T14:38:14.7692374Z ================================================== 2021-05-18T14:38:14.7692955Z downloaded 190 KB 2021-05-18T14:38:14.7693280Z 2021-05-18T14:38:14.7738271Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-18T14:38:15.0586823Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-18T14:38:15.0589139Z ================================================== 2021-05-18T14:38:15.0589660Z downloaded 21 KB 2021-05-18T14:38:15.0589972Z 2021-05-18T14:38:15.0633712Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gplots_3.1.1.tar.gz' 2021-05-18T14:38:15.4503735Z Content type 'binary/octet-stream' length 513469 bytes (501 KB) 2021-05-18T14:38:15.4651840Z ================================================== 2021-05-18T14:38:15.4653972Z downloaded 501 KB 2021-05-18T14:38:15.4655524Z 2021-05-18T14:38:15.4693337Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ROCR_1.0-11.tar.gz' 2021-05-18T14:38:15.7603184Z Content type 'binary/octet-stream' length 272591 bytes (266 KB) 2021-05-18T14:38:15.7635081Z ================================================== 2021-05-18T14:38:15.7635632Z downloaded 266 KB 2021-05-18T14:38:15.7635942Z 2021-05-18T14:38:16.0256121Z * installing *source* package ‘bitops’ ... 2021-05-18T14:38:16.0269565Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-18T14:38:16.0305181Z ** using staged installation 2021-05-18T14:38:16.0433623Z ** libs 2021-05-18T14:38:16.0494113Z 2021-05-18T14:38:16.0496118Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-18T14:38:16.2881260Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-18T14:38:16.3637814Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-18T14:38:16.4214534Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:38:16.4410747Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-18T14:38:16.4418633Z ** R 2021-05-18T14:38:16.4450031Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:38:16.7286829Z ** help 2021-05-18T14:38:16.7584165Z *** installing help indices 2021-05-18T14:38:16.7823599Z ** building package indices 2021-05-18T14:38:17.0313895Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:38:17.2570619Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:38:17.2769393Z ** testing if installed package can be loaded from final location 2021-05-18T14:38:17.4990790Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:38:17.4996654Z * DONE (bitops) 2021-05-18T14:38:17.8419085Z * installing *source* package ‘gtools’ ... 2021-05-18T14:38:17.8477565Z ** package ‘gtools’ successfully unpacked and MD5 sums checked 2021-05-18T14:38:17.8479360Z ** using staged installation 2021-05-18T14:38:17.8599635Z ** libs 2021-05-18T14:38:17.8656406Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c gtools_load.c -o gtools_load.o 2021-05-18T14:38:17.9217391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c roman2int.c -o roman2int.o 2021-05-18T14:38:17.9910399Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c setTCPNoDelay.c -o setTCPNoDelay.o 2021-05-18T14:38:18.0590684Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gtools.so gtools_load.o roman2int.o setTCPNoDelay.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:38:18.0839778Z installing to /home/runner/work/_temp/Library/00LOCK-gtools/00new/gtools/libs 2021-05-18T14:38:18.0854917Z ** R 2021-05-18T14:38:18.0974440Z ** data 2021-05-18T14:38:18.0982003Z ** inst 2021-05-18T14:38:18.0991994Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:38:19.2521683Z ** help 2021-05-18T14:38:19.3633618Z *** installing help indices 2021-05-18T14:38:19.4460090Z ** building package indices 2021-05-18T14:38:19.7388311Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:38:19.9561685Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:38:19.9777812Z ** testing if installed package can be loaded from final location 2021-05-18T14:38:20.2091831Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:38:20.2102327Z * DONE (gtools) 2021-05-18T14:38:20.5302917Z * installing *source* package ‘R.methodsS3’ ... 2021-05-18T14:38:20.5321679Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-18T14:38:20.5355908Z ** using staged installation 2021-05-18T14:38:20.5536782Z ** R 2021-05-18T14:38:20.5643291Z ** inst 2021-05-18T14:38:20.5653981Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:38:21.2130889Z ** help 2021-05-18T14:38:21.2680805Z *** installing help indices 2021-05-18T14:38:21.3182927Z ** building package indices 2021-05-18T14:38:21.5805072Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:38:21.8120131Z ** testing if installed package can be loaded from final location 2021-05-18T14:38:22.0556950Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:38:22.0566210Z * DONE (R.methodsS3) 2021-05-18T14:38:22.6473262Z * installing *source* package ‘matrixStats’ ... 2021-05-18T14:38:22.6592594Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-18T14:38:22.6623933Z ** using staged installation 2021-05-18T14:38:22.6823907Z ** libs 2021-05-18T14:38:22.6897078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-18T14:38:22.7411135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-18T14:38:23.0674323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-18T14:38:23.2059081Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-18T14:38:23.3237877Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-18T14:38:23.5038029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-18T14:38:25.2004809Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-18T14:38:25.6453923Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-18T14:38:27.5853588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-18T14:38:27.8629872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-18T14:38:27.9428539Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-18T14:38:28.2053473Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-18T14:38:28.3936230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-18T14:38:28.5875819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-18T14:38:28.6719588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-18T14:38:30.5294599Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-18T14:38:31.8673538Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-18T14:38:33.1932358Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-18T14:38:34.3007626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-18T14:38:35.4086656Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-18T14:38:37.9082072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-18T14:38:38.0713155Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-18T14:38:39.3235532Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-18T14:38:40.0477059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-18T14:38:41.1331882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-18T14:38:41.6707410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-18T14:38:44.2398110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-18T14:38:59.4371117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-18T14:39:00.1743746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-18T14:39:01.0003410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-18T14:39:01.1603571Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-18T14:39:01.3052006Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-18T14:39:01.6153583Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-18T14:39:01.8334514Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-18T14:39:02.3753543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-18T14:40:12.1268347Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:40:12.2410314Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-18T14:40:12.2578372Z ** R 2021-05-18T14:40:12.2836822Z ** inst 2021-05-18T14:40:12.2896603Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:14.6504039Z ** help 2021-05-18T14:40:14.6514576Z *** installing help indices 2021-05-18T14:40:14.6515354Z ** building package indices 2021-05-18T14:40:14.8448006Z ** installing vignettes 2021-05-18T14:40:14.8523711Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:15.0862401Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:40:15.1145008Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:15.3513397Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:15.3538174Z * DONE (matrixStats) 2021-05-18T14:40:15.6322814Z * installing *source* package ‘abind’ ... 2021-05-18T14:40:15.6337892Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-18T14:40:15.6374863Z ** using staged installation 2021-05-18T14:40:15.6509963Z ** R 2021-05-18T14:40:15.6570469Z ** inst 2021-05-18T14:40:15.6580702Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:16.4099033Z ** help 2021-05-18T14:40:16.4401038Z *** installing help indices 2021-05-18T14:40:16.4655856Z ** building package indices 2021-05-18T14:40:16.7021462Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:16.9199851Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:17.1526404Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:17.1537306Z * DONE (abind) 2021-05-18T14:40:17.4572556Z * installing *source* package ‘caTools’ ... 2021-05-18T14:40:17.4590974Z ** package ‘caTools’ successfully unpacked and MD5 sums checked 2021-05-18T14:40:17.4592214Z ** using staged installation 2021-05-18T14:40:17.4725133Z ** libs 2021-05-18T14:40:17.4780931Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Gif2R.cpp -o Gif2R.o 2021-05-18T14:40:17.6147069Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c GifTools.cpp -o GifTools.o 2021-05-18T14:40:18.1422630Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c caTools_init.c -o caTools_init.o 2021-05-18T14:40:18.2050303Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c runfunc.c -o runfunc.o 2021-05-18T14:40:18.9028527Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o caTools.so Gif2R.o GifTools.o caTools_init.o runfunc.o -L/opt/R/devel/lib/R/lib -lR 2021-05-18T14:40:18.9752966Z installing to /home/runner/work/_temp/Library/00LOCK-caTools/00new/caTools/libs 2021-05-18T14:40:18.9772251Z ** R 2021-05-18T14:40:18.9872220Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:20.1237775Z ** help 2021-05-18T14:40:20.2311275Z *** installing help indices 2021-05-18T14:40:20.2970291Z ** building package indices 2021-05-18T14:40:20.5950753Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:20.8353421Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-18T14:40:20.8580053Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:21.0942812Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:21.0954199Z * DONE (caTools) 2021-05-18T14:40:21.5647248Z * installing *source* package ‘R.oo’ ... 2021-05-18T14:40:21.5731022Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-18T14:40:21.5763119Z ** using staged installation 2021-05-18T14:40:21.5927679Z ** R 2021-05-18T14:40:21.6334598Z ** inst 2021-05-18T14:40:21.6352400Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:25.5167652Z ** help 2021-05-18T14:40:26.1358822Z *** installing help indices 2021-05-18T14:40:26.6025973Z ** building package indices 2021-05-18T14:40:27.2281235Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:27.4904377Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:27.8597883Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:27.8653600Z * DONE (R.oo) 2021-05-18T14:40:28.5782345Z * installing *source* package ‘R.utils’ ... 2021-05-18T14:40:28.5956616Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-18T14:40:28.5990891Z ** using staged installation 2021-05-18T14:40:28.6177094Z ** R 2021-05-18T14:40:28.7067002Z ** inst 2021-05-18T14:40:28.7083468Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:37.3616047Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-18T14:40:37.3618107Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-18T14:40:37.3620138Z ** help 2021-05-18T14:40:38.4170330Z *** installing help indices 2021-05-18T14:40:39.0371662Z ** building package indices 2021-05-18T14:40:39.9561183Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:40.2588095Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:40.7576749Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:40.7667878Z * DONE (R.utils) 2021-05-18T14:40:41.1657966Z * installing *source* package ‘gplots’ ... 2021-05-18T14:40:41.1710594Z ** package ‘gplots’ successfully unpacked and MD5 sums checked 2021-05-18T14:40:41.1711798Z ** using staged installation 2021-05-18T14:40:41.1906927Z ** R 2021-05-18T14:40:41.2136900Z ** data 2021-05-18T14:40:41.2141641Z ** inst 2021-05-18T14:40:41.2157468Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:44.8449757Z ** help 2021-05-18T14:40:44.9957192Z *** installing help indices 2021-05-18T14:40:45.0878692Z ** building package indices 2021-05-18T14:40:45.4242742Z ** installing vignettes 2021-05-18T14:40:45.4320835Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:45.6832920Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:46.0185143Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:46.0231807Z * DONE (gplots) 2021-05-18T14:40:46.3547274Z * installing *source* package ‘ROCR’ ... 2021-05-18T14:40:46.3573985Z ** package ‘ROCR’ successfully unpacked and MD5 sums checked 2021-05-18T14:40:46.3575453Z ** using staged installation 2021-05-18T14:40:46.3754237Z ** R 2021-05-18T14:40:46.3874989Z ** data 2021-05-18T14:40:46.3880966Z ** demo 2021-05-18T14:40:46.3888082Z ** inst 2021-05-18T14:40:46.3902864Z ** byte-compile and prepare package for lazy loading 2021-05-18T14:40:48.3231223Z ** help 2021-05-18T14:40:48.3749584Z *** installing help indices 2021-05-18T14:40:48.4083929Z ** building package indices 2021-05-18T14:40:48.6656071Z ** installing vignettes 2021-05-18T14:40:48.6720100Z ** testing if installed package can be loaded from temporary location 2021-05-18T14:40:48.9555707Z ** testing if installed package can be loaded from final location 2021-05-18T14:40:49.2708259Z ** testing if installed package keeps a record of temporary installation path 2021-05-18T14:40:49.2740774Z * DONE (ROCR) 2021-05-18T14:40:49.2847351Z 2021-05-18T14:40:49.2848261Z The downloaded source packages are in 2021-05-18T14:40:49.2850013Z ‘/tmp/RtmpDRO57Y/downloaded_packages’ 2021-05-18T14:40:49.7068702Z Skipping install of 'mmand' from a github remote, the SHA1 (4b29cf30) has not changed since last install. 2021-05-18T14:40:49.7070112Z Use `force = TRUE` to force installation 2021-05-18T14:40:49.9687048Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-18T14:40:49.9688133Z Use `force = TRUE` to force installation 2021-05-18T14:40:50.2289339Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-18T14:40:50.2290430Z Use `force = TRUE` to force installation 2021-05-18T14:40:50.4718565Z Skipping install of 'fslr' from a github remote, the SHA1 (2836c318) has not changed since last install. 2021-05-18T14:40:50.4719897Z Use `force = TRUE` to force installation 2021-05-18T14:41:08.4410009Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-18T14:41:08.4411263Z Use `force = TRUE` to force installation 2021-05-18T14:41:08.4424029Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-18T14:41:08.4425613Z Use `force = TRUE` to force installation 2021-05-18T14:41:08.4648740Z ##[group]Run options(width = 100) 2021-05-18T14:41:08.4649334Z options(width = 100) 2021-05-18T14:41:08.4650124Z pkgs <- installed.packages()[, "Package"] 2021-05-18T14:41:08.4651014Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-18T14:41:08.4660981Z shell: /usr/local/bin/Rscript {0} 2021-05-18T14:41:08.4661592Z env: 2021-05-18T14:41:08.4662074Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:41:08.4662589Z TIC_DEPLOY_KEY: 2021-05-18T14:41:08.4663446Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:41:08.4665525Z GITHUB_PAT: *** 2021-05-18T14:41:08.4666793Z COVERALLS_TOKEN: *** 2021-05-18T14:41:08.4667489Z continue-on-error: true 2021-05-18T14:41:08.4668046Z VDIFFR_RUN_TESTS: 2021-05-18T14:41:08.4668554Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:41:08.4669039Z TZ: UTC 2021-05-18T14:41:08.4669556Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:41:08.4670036Z NOT_CRAN: true 2021-05-18T14:41:08.4670444Z ##[endgroup] 2021-05-18T14:41:09.0828866Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-18T14:41:09.0829631Z setting value 2021-05-18T14:41:09.0830649Z version R Under development (unstable) (2021-05-16 r80304) 2021-05-18T14:41:09.0831401Z os Ubuntu 20.04.2 LTS 2021-05-18T14:41:09.0832222Z system x86_64, linux-gnu 2021-05-18T14:41:09.0832859Z ui X11 2021-05-18T14:41:09.0833454Z language (EN) 2021-05-18T14:41:09.0834439Z collate C.UTF-8 2021-05-18T14:41:09.0835604Z ctype C.UTF-8 2021-05-18T14:41:09.0836353Z tz UTC 2021-05-18T14:41:09.0837145Z date 2021-05-18 2021-05-18T14:41:09.0837468Z 2021-05-18T14:41:09.0838403Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-18T14:41:09.0839215Z package * version date lib source 2021-05-18T14:41:09.0840217Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0841226Z aghast 0.2.1 2021-05-18 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2.1.2 2021-04-17 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0857586Z codetools 0.2-18 2020-11-04 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0858572Z commonmark 1.7 2018-12-01 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0859515Z compiler 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0860449Z covr 3.5.1 2020-09-16 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0861359Z cpp11 0.2.7 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0862263Z crayon 1.4.1 2021-02-08 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0863237Z credentials 1.3.0 2020-07-21 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0864183Z curl 4.3.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0865235Z datasets * 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0866451Z debugme 1.1.0 2017-10-22 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0867373Z desc 1.2.0.9000 2021-05-18 [1] Github (muschellij2/desc@7be86f2) 2021-05-18T14:41:09.0868273Z devtools 2.4.1 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0869117Z diffobj 0.3.4 2021-03-22 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0869953Z digest 0.6.27 2020-10-24 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0871134Z dplyr 1.0.6 2021-05-05 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0872042Z ellipsis 0.3.2 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0872975Z evaluate 0.14 2019-05-28 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0873868Z fansi 0.4.2 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0875053Z fastmap 1.1.0 2021-01-25 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0876059Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0876844Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0877708Z fslr 2.25.0 2021-05-18 [1] Github (neuroconductor/fslr@2836c31) 2021-05-18T14:41:09.0878587Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0879405Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0880751Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0882420Z ghtravis 0.15.1 2021-05-18 [1] Github (muschellij2/ghtravis@0b26809) 2021-05-18T14:41:09.0885372Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0886347Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0887268Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0888196Z gplots 3.1.1 2020-11-28 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0889434Z graphics * 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0890422Z grDevices * 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0891362Z grid 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0892275Z gtools 3.8.2 2020-03-31 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0893191Z highr 0.9 2021-04-16 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0894306Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0895309Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0896189Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0897112Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0898087Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0899028Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0899949Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0900873Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0901842Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0902795Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0903791Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0904723Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0905640Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0906575Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0907545Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0908476Z methods * 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0909380Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0910351Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0911490Z mmand 1.6.0 2021-05-18 [1] Github (neuroconductor/mmand@4b29cf3) 2021-05-18T14:41:09.0912657Z neurobase 1.30.1 2021-05-18 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-18T14:41:09.0913828Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0914745Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0915683Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0916757Z oro.nifti 0.10.3 2021-05-18 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-18T14:41:09.0917819Z parallel 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0918764Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0919926Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0920862Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0921822Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0922759Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0923705Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0924678Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0925598Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0926487Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0927444Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0928554Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0929496Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0930519Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0931490Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0932437Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0933372Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0934419Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0935351Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0936275Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0937167Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0938114Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0939353Z RNifti 1.3.1 2021-05-18 [1] Github (neuroconductor/RNifti@929106d) 2021-05-18T14:41:09.0940356Z ROCR 1.0-11 2020-05-02 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0941293Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0942228Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0943148Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0944115Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0945069Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0945997Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0946979Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0947944Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0948866Z splines 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0949785Z stats * 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0950694Z stats4 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0951598Z stringi 1.6.2 2021-05-17 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0952526Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0953503Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-18T14:41:09.0956954Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0958191Z sysreqs 1.0.0.9000 2021-05-18 [1] Github (r-hub/sysreqs@f068afa) 2021-05-18T14:41:09.0959627Z tcltk 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0960573Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0961492Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0962472Z tic 0.10.0 2021-05-18 [1] Github (ropensci/tic@3b4dfb8) 2021-05-18T14:41:09.0963445Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0964379Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0965341Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0966255Z tools 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0967169Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0968094Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0969448Z utils * 4.2.0 2021-05-17 [2] local 2021-05-18T14:41:09.0970415Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0971334Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0972256Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0973165Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0974072Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0974977Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0975885Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0976798Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0977706Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-18T14:41:09.0978106Z 2021-05-18T14:41:09.0978639Z [1] /home/runner/work/_temp/Library 2021-05-18T14:41:09.0979250Z [2] /opt/R/devel/lib/R/library 2021-05-18T14:41:09.1022658Z ##[group]Run Rscript -e 'tic::script()' 2021-05-18T14:41:09.1023574Z Rscript -e 'tic::script()' 2021-05-18T14:41:09.1024188Z ls -l check 2021-05-18T14:41:09.1076001Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-18T14:41:09.1076551Z env: 2021-05-18T14:41:09.1077038Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:41:09.1077542Z TIC_DEPLOY_KEY: 2021-05-18T14:41:09.1078481Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:41:09.1080093Z GITHUB_PAT: *** 2021-05-18T14:41:09.1081207Z COVERALLS_TOKEN: *** 2021-05-18T14:41:09.1081729Z continue-on-error: true 2021-05-18T14:41:09.1082583Z VDIFFR_RUN_TESTS: 2021-05-18T14:41:09.1083081Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:41:09.1083557Z TZ: UTC 2021-05-18T14:41:09.1084134Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:41:09.1085014Z NOT_CRAN: true 2021-05-18T14:41:09.1086167Z ##[endgroup] 2021-05-18T14:41:09.4499609Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:41:09.6234395Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-18T14:41:09.6236171Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-18T14:41:09.6237236Z timeout = Inf, check_dir = "check") 2021-05-18T14:41:09.7119647Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-18T14:41:09.9841560Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-18T14:41:10.0036005Z * preparing ‘oasis’: 2021-05-18T14:41:10.0179228Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:41:10.0716321Z * checking for LF line-endings in source and make files and shell scripts 2021-05-18T14:41:10.0723638Z * checking for empty or unneeded directories 2021-05-18T14:41:10.0780809Z * building ‘oasis_3.0.1.tar.gz’ 2021-05-18T14:41:10.1043915Z 2021-05-18T14:41:10.2605651Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-18T14:41:10.5320361Z * using log directory ‘/home/runner/work/oasis/oasis/check/oasis.Rcheck’ 2021-05-18T14:41:10.5321920Z * using R Under development (unstable) (2021-05-16 r80304) 2021-05-18T14:41:10.5323131Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-18T14:41:10.5324210Z * using session charset: UTF-8 2021-05-18T14:41:10.5635281Z * using option ‘--as-cran’ 2021-05-18T14:41:10.5745037Z * checking for file ‘oasis/DESCRIPTION’ ... OK 2021-05-18T14:41:10.5754929Z * checking extension type ... Package 2021-05-18T14:41:10.5756230Z * this is package ‘oasis’ version ‘3.0.1’ 2021-05-18T14:41:10.5757225Z * package encoding: UTF-8 2021-05-18T14:41:10.5795175Z * checking package namespace information ... OK 2021-05-18T14:41:29.6702946Z * checking package dependencies ... OK 2021-05-18T14:41:29.6712581Z * checking if this is a source package ... OK 2021-05-18T14:41:29.6713708Z * checking if there is a namespace ... OK 2021-05-18T14:41:29.7490317Z * checking for executable files ... OK 2021-05-18T14:41:29.7492466Z * checking for hidden files and directories ... OK 2021-05-18T14:41:29.7493448Z * checking for portable file names ... OK 2021-05-18T14:41:29.7501817Z * checking for sufficient/correct file permissions ... OK 2021-05-18T14:41:29.7545836Z * checking serialization versions ... OK 2021-05-18T14:41:33.7942502Z * checking whether package ‘oasis’ can be installed ... OK 2021-05-18T14:41:33.8010065Z * checking installed package size ... OK 2021-05-18T14:41:33.9090981Z * checking package directory ... OK 2021-05-18T14:41:33.9092887Z * checking for future file timestamps ... OK 2021-05-18T14:41:34.1129236Z * checking DESCRIPTION meta-information ... OK 2021-05-18T14:41:34.1130704Z * checking top-level files ... OK 2021-05-18T14:41:34.1131960Z * checking for left-over files ... OK 2021-05-18T14:41:34.1133043Z * checking index information ... OK 2021-05-18T14:41:34.2702938Z * checking package subdirectories ... OK 2021-05-18T14:41:34.3238968Z * checking R files for non-ASCII characters ... OK 2021-05-18T14:41:34.3813198Z * checking R files for syntax errors ... OK 2021-05-18T14:41:35.3850684Z * checking whether the package can be loaded ... OK 2021-05-18T14:41:36.3614656Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-18T14:41:37.3271904Z * checking whether the package can be unloaded cleanly ... OK 2021-05-18T14:41:38.2658041Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-18T14:41:39.2356722Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-18T14:41:40.2890356Z * checking loading without being on the library search path ... OK 2021-05-18T14:41:41.2376647Z * checking dependencies in R code ... OK 2021-05-18T14:41:43.1136680Z * checking S3 generic/method consistency ... OK 2021-05-18T14:41:44.0399194Z * checking replacement functions ... OK 2021-05-18T14:41:44.9871527Z * checking foreign function calls ... OK 2021-05-18T14:41:50.9369080Z * checking R code for possible problems ... OK 2021-05-18T14:41:51.2004697Z * checking Rd files ... OK 2021-05-18T14:41:51.2593185Z * checking Rd metadata ... OK 2021-05-18T14:41:51.3617507Z * checking Rd line widths ... OK 2021-05-18T14:41:51.4902974Z * checking Rd cross-references ... OK 2021-05-18T14:41:52.5070637Z * checking for missing documentation entries ... OK 2021-05-18T14:41:55.3061019Z * checking for code/documentation mismatches ... OK 2021-05-18T14:41:57.3556677Z * checking Rd \usage sections ... OK 2021-05-18T14:41:57.4595059Z * checking Rd contents ... OK 2021-05-18T14:41:57.6087229Z * checking for unstated dependencies in examples ... OK 2021-05-18T14:41:57.6229904Z * checking contents of ‘data’ directory ... OK 2021-05-18T14:41:57.8405310Z * checking data for non-ASCII characters ... OK 2021-05-18T14:41:57.8416221Z * checking LazyData ... OK 2021-05-18T14:41:58.0728155Z * checking data for ASCII and uncompressed saves ... OK 2021-05-18T14:42:02.1701027Z * checking examples ... OK 2021-05-18T14:42:04.5944587Z * checking PDF version of manual ... OK 2021-05-18T14:42:04.5946752Z * checking for non-standard things in the check directory ... OK 2021-05-18T14:42:04.5947921Z * checking for detritus in the temp directory ... OK 2021-05-18T14:42:04.5948645Z * DONE 2021-05-18T14:42:04.5949182Z 2021-05-18T14:42:04.5949885Z Status: OK 2021-05-18T14:42:04.5950441Z 2021-05-18T14:42:04.7029816Z ── R CMD check results ──────────────────────────────────────── oasis 3.0.1 ──── 2021-05-18T14:42:04.7051998Z Duration: 54.6s 2021-05-18T14:42:04.7053125Z 2021-05-18T14:42:04.7068045Z 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ 2021-05-18T14:42:04.7184400Z total 116 2021-05-18T14:42:04.7185977Z drwxr-xr-x 5 runner docker 4096 May 18 14:42 oasis.Rcheck 2021-05-18T14:42:04.7187559Z -rw-r--r-- 1 runner docker 35498 May 18 14:41 oasis_3.0.1.tar.gz 2021-05-18T14:42:04.7189695Z -rw-r--r-- 1 runner docker 75577 May 18 14:41 oasis_3.0.1_R_x86_64-pc-linux-gnu.tar.gz 2021-05-18T14:42:04.7230753Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-18T14:42:04.7231483Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-18T14:42:04.7283942Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-18T14:42:04.7284466Z env: 2021-05-18T14:42:04.7284932Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:42:04.7285602Z TIC_DEPLOY_KEY: 2021-05-18T14:42:04.7286467Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:42:04.7289449Z GITHUB_PAT: *** 2021-05-18T14:42:04.7290328Z COVERALLS_TOKEN: *** 2021-05-18T14:42:04.7290928Z continue-on-error: true 2021-05-18T14:42:04.7291443Z VDIFFR_RUN_TESTS: 2021-05-18T14:42:04.7291957Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:42:04.7292449Z TZ: UTC 2021-05-18T14:42:04.7292858Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:42:04.7293312Z NOT_CRAN: true 2021-05-18T14:42:04.7293725Z ##[endgroup] 2021-05-18T14:42:04.7427977Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-18T14:42:04.7428912Z Rscript -e "tic::before_deploy()" 2021-05-18T14:42:04.7476281Z shell: /usr/bin/bash -e {0} 2021-05-18T14:42:04.7476699Z env: 2021-05-18T14:42:04.7477185Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:42:04.7477690Z TIC_DEPLOY_KEY: 2021-05-18T14:42:04.7478559Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:42:04.7479909Z GITHUB_PAT: *** 2021-05-18T14:42:04.7480749Z COVERALLS_TOKEN: *** 2021-05-18T14:42:04.7481283Z continue-on-error: true 2021-05-18T14:42:04.7482013Z VDIFFR_RUN_TESTS: 2021-05-18T14:42:04.7483926Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:42:04.7484476Z TZ: UTC 2021-05-18T14:42:04.7484888Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:42:04.7485343Z NOT_CRAN: true 2021-05-18T14:42:04.7485760Z ##[endgroup] 2021-05-18T14:42:05.1031523Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:42:05.2675413Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-18T14:42:05.2675969Z with: 2021-05-18T14:42:05.2676731Z upload_url: https://uploads.github.com/repos/neuroconductor/oasis/releases/43144057/assets{?name,label} 2021-05-18T14:42:05.2677670Z asset_path: check/oasis_3.0.1_R_x86_64-pc-linux-gnu.tar.gz 2021-05-18T14:42:05.2678302Z asset_name: oasis_3.0.1_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-18T14:42:05.2678903Z asset_content_type: application/octet-stream 2021-05-18T14:42:05.2679376Z env: 2021-05-18T14:42:05.2679791Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:42:05.2680220Z TIC_DEPLOY_KEY: 2021-05-18T14:42:05.2680961Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:42:05.2682357Z GITHUB_PAT: *** 2021-05-18T14:42:05.2683132Z COVERALLS_TOKEN: *** 2021-05-18T14:42:05.2683598Z continue-on-error: true 2021-05-18T14:42:05.2684032Z VDIFFR_RUN_TESTS: 2021-05-18T14:42:05.2684534Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:42:05.2684948Z TZ: UTC 2021-05-18T14:42:05.2685320Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:42:05.2685698Z NOT_CRAN: true 2021-05-18T14:42:05.2686472Z GITHUB_TOKEN: *** 2021-05-18T14:42:05.2686846Z ##[endgroup] 2021-05-18T14:42:06.2907778Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-18T14:42:06.2908372Z Rscript -e "tic::deploy()" 2021-05-18T14:42:06.2971366Z shell: /usr/bin/bash -e {0} 2021-05-18T14:42:06.2971766Z env: 2021-05-18T14:42:06.2972193Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:42:06.2972669Z TIC_DEPLOY_KEY: 2021-05-18T14:42:06.2973443Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:42:06.2974816Z GITHUB_PAT: *** 2021-05-18T14:42:06.2975610Z COVERALLS_TOKEN: *** 2021-05-18T14:42:06.2976075Z continue-on-error: true 2021-05-18T14:42:06.2976541Z VDIFFR_RUN_TESTS: 2021-05-18T14:42:06.2977018Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:42:06.2977447Z TZ: UTC 2021-05-18T14:42:06.2977830Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:42:06.2978226Z NOT_CRAN: true 2021-05-18T14:42:06.2978604Z ##[endgroup] 2021-05-18T14:42:06.6308067Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:42:06.7955603Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-18T14:42:06.7956299Z Rscript -e "tic::after_deploy()" 2021-05-18T14:42:06.8012552Z shell: /usr/bin/bash -e {0} 2021-05-18T14:42:06.8013020Z env: 2021-05-18T14:42:06.8013737Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-18T14:42:06.8014242Z TIC_DEPLOY_KEY: 2021-05-18T14:42:06.8015112Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-18T14:42:06.8016587Z GITHUB_PAT: *** 2021-05-18T14:42:06.8017688Z COVERALLS_TOKEN: *** 2021-05-18T14:42:06.8018247Z continue-on-error: true 2021-05-18T14:42:06.8018747Z VDIFFR_RUN_TESTS: 2021-05-18T14:42:06.8019277Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-18T14:42:06.8019771Z TZ: UTC 2021-05-18T14:42:06.8020178Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-18T14:42:06.8020631Z NOT_CRAN: true 2021-05-18T14:42:06.8021031Z ##[endgroup] 2021-05-18T14:42:07.1421693Z ✔ Loading tic stage configuration from tic.R 2021-05-18T14:42:07.5085806Z Post job cleanup. 2021-05-18T14:42:07.5657536Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-18T14:42:07.5785158Z Post job cleanup. 2021-05-18T14:42:07.7157200Z [command]/usr/bin/git version 2021-05-18T14:42:07.7232339Z git version 2.31.1 2021-05-18T14:42:07.7291675Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-18T14:42:07.7348711Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-18T14:42:07.7630089Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-18T14:42:07.7682077Z http.https://github.com/.extraheader 2021-05-18T14:42:07.7692474Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-18T14:42:07.7746141Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-18T14:42:07.8095015Z Cleaning up orphan processes