2021-05-17T17:00:55.4364116Z ##[section]Starting: Request a runner to run this job 2021-05-17T17:00:56.0250462Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-17T17:00:56.1031052Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T17:00:56.2204270Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T17:00:56.3856809Z ##[section]Finishing: Request a runner to run this job 2021-05-17T17:01:04.6346552Z Current runner version: '2.278.0' 2021-05-17T17:01:04.6373146Z ##[group]Operating System 2021-05-17T17:01:04.6374096Z Ubuntu 2021-05-17T17:01:04.6374516Z 20.04.2 2021-05-17T17:01:04.6374967Z LTS 2021-05-17T17:01:04.6375481Z ##[endgroup] 2021-05-17T17:01:04.6376002Z ##[group]Virtual Environment 2021-05-17T17:01:04.6376664Z Environment: ubuntu-20.04 2021-05-17T17:01:04.6377189Z Version: 20210510.0 2021-05-17T17:01:04.6378192Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-17T17:01:04.6379561Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-17T17:01:04.6380418Z ##[endgroup] 2021-05-17T17:01:04.6382551Z ##[group]GITHUB_TOKEN Permissions 2021-05-17T17:01:04.6383764Z Actions: write 2021-05-17T17:01:04.6384314Z Checks: write 2021-05-17T17:01:04.6384788Z Contents: write 2021-05-17T17:01:04.6385365Z Deployments: write 2021-05-17T17:01:04.6385994Z Issues: write 2021-05-17T17:01:04.6386537Z Metadata: read 2021-05-17T17:01:04.6387022Z Packages: write 2021-05-17T17:01:04.6387614Z PullRequests: write 2021-05-17T17:01:04.6388273Z RepositoryProjects: write 2021-05-17T17:01:04.6388882Z SecurityEvents: write 2021-05-17T17:01:04.6389473Z Statuses: write 2021-05-17T17:01:04.6390047Z ##[endgroup] 2021-05-17T17:01:04.6393060Z Prepare workflow directory 2021-05-17T17:01:04.7387226Z Prepare all required actions 2021-05-17T17:01:04.7398268Z Getting action download info 2021-05-17T17:01:05.1780045Z Download action repository 'actions/checkout@v2' 2021-05-17T17:01:07.2943625Z Download action repository 'r-lib/actions@master' 2021-05-17T17:01:07.8484199Z Download action repository 'adigherman/actions@master' 2021-05-17T17:01:10.1266973Z Download action repository 'msys2/setup-msys2@v2' 2021-05-17T17:01:10.4131637Z Download action repository 'actions/cache@v1' 2021-05-17T17:01:10.5716975Z Download action repository 'actions/upload-artifact@master' 2021-05-17T17:01:10.7807641Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-17T17:01:11.1792574Z ##[group]Run actions/checkout@v2 2021-05-17T17:01:11.1793247Z with: 2021-05-17T17:01:11.1793811Z repository: neuroconductor/spm12r 2021-05-17T17:01:11.1794860Z token: *** 2021-05-17T17:01:11.1795254Z ssh-strict: true 2021-05-17T17:01:11.1795806Z persist-credentials: true 2021-05-17T17:01:11.1796309Z clean: true 2021-05-17T17:01:11.1796759Z fetch-depth: 1 2021-05-17T17:01:11.1797155Z lfs: false 2021-05-17T17:01:11.1797611Z submodules: false 2021-05-17T17:01:11.1798037Z env: 2021-05-17T17:01:11.1798500Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:01:11.1799026Z TIC_DEPLOY_KEY: 2021-05-17T17:01:11.1799852Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:01:11.1801078Z GITHUB_PAT: *** 2021-05-17T17:01:11.1801927Z COVERALLS_TOKEN: *** 2021-05-17T17:01:11.1802488Z continue-on-error: true 2021-05-17T17:01:11.1802973Z VDIFFR_RUN_TESTS: 2021-05-17T17:01:11.1803432Z ##[endgroup] 2021-05-17T17:01:11.8189806Z Syncing repository: neuroconductor/spm12r 2021-05-17T17:01:11.8194798Z ##[group]Getting Git version info 2021-05-17T17:01:11.8196390Z Working directory is '/home/runner/work/spm12r/spm12r' 2021-05-17T17:01:11.8197378Z [command]/usr/bin/git version 2021-05-17T17:01:11.8197793Z git version 2.31.1 2021-05-17T17:01:11.8198625Z ##[endgroup] 2021-05-17T17:01:11.8199300Z Deleting the contents of '/home/runner/work/spm12r/spm12r' 2021-05-17T17:01:11.8202475Z ##[group]Initializing the repository 2021-05-17T17:01:11.8203263Z [command]/usr/bin/git init /home/runner/work/spm12r/spm12r 2021-05-17T17:01:11.8204425Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-17T17:01:11.8205332Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-17T17:01:11.8206239Z hint: of your new repositories, which will suppress this warning, call: 2021-05-17T17:01:11.8206900Z hint: 2021-05-17T17:01:11.8207664Z hint: git config --global init.defaultBranch 2021-05-17T17:01:11.8208603Z hint: 2021-05-17T17:01:11.8209399Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-17T17:01:11.8210442Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-17T17:01:11.8211125Z hint: 2021-05-17T17:01:11.8211717Z hint: git branch -m 2021-05-17T17:01:11.8212441Z Initialized empty Git repository in /home/runner/work/spm12r/spm12r/.git/ 2021-05-17T17:01:11.8239927Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/spm12r 2021-05-17T17:01:11.8241050Z ##[endgroup] 2021-05-17T17:01:11.8241581Z ##[group]Disabling automatic garbage collection 2021-05-17T17:01:11.8242570Z [command]/usr/bin/git config --local gc.auto 0 2021-05-17T17:01:11.8243089Z ##[endgroup] 2021-05-17T17:01:11.8244707Z ##[group]Setting up auth 2021-05-17T17:01:11.8245539Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T17:01:11.8246958Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T17:01:11.8248394Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T17:01:11.8250148Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T17:01:11.8251897Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-17T17:01:11.8252680Z ##[endgroup] 2021-05-17T17:01:11.8253126Z ##[group]Fetching the repository 2021-05-17T17:01:11.8254726Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +ba1508c99cb4659c2bb8fe1550c66a5b38da2dd0:refs/tags/2.8.1.s 2021-05-17T17:01:11.8255934Z remote: Enumerating objects: 192, done. 2021-05-17T17:01:11.8256652Z remote: Counting objects: 0% (1/192) 2021-05-17T17:01:11.8257153Z remote: Counting objects: 1% (2/192) 2021-05-17T17:01:11.8257656Z remote: Counting objects: 2% (4/192) 2021-05-17T17:01:11.8258169Z remote: Counting objects: 3% (6/192) 2021-05-17T17:01:11.8258659Z remote: Counting objects: 4% (8/192) 2021-05-17T17:01:11.8259167Z remote: Counting objects: 5% (10/192) 2021-05-17T17:01:11.8259666Z remote: Counting objects: 6% (12/192) 2021-05-17T17:01:11.8260173Z remote: Counting objects: 7% (14/192) 2021-05-17T17:01:11.8260843Z remote: Counting objects: 8% (16/192) 2021-05-17T17:01:11.8261341Z remote: Counting objects: 9% (18/192) 2021-05-17T17:01:11.8261847Z remote: Counting objects: 10% (20/192) 2021-05-17T17:01:11.8262341Z remote: Counting objects: 11% (22/192) 2021-05-17T17:01:11.8262855Z remote: Counting objects: 12% (24/192) 2021-05-17T17:01:11.8263378Z remote: Counting objects: 13% (25/192) 2021-05-17T17:01:11.8263876Z remote: Counting objects: 14% (27/192) 2021-05-17T17:01:11.8264382Z remote: Counting objects: 15% (29/192) 2021-05-17T17:01:11.8264892Z remote: Counting objects: 16% (31/192) 2021-05-17T17:01:11.8265383Z remote: Counting objects: 17% (33/192) 2021-05-17T17:01:11.8265882Z remote: Counting objects: 18% (35/192) 2021-05-17T17:01:11.8266377Z remote: Counting objects: 19% (37/192) 2021-05-17T17:01:11.8266879Z remote: Counting objects: 20% (39/192) 2021-05-17T17:01:11.8267383Z remote: Counting objects: 21% (41/192) 2021-05-17T17:01:11.8267876Z remote: Counting objects: 22% (43/192) 2021-05-17T17:01:11.8268378Z remote: Counting objects: 23% (45/192) 2021-05-17T17:01:11.8268871Z remote: Counting objects: 24% (47/192) 2021-05-17T17:01:11.8269377Z remote: Counting objects: 25% (48/192) 2021-05-17T17:01:11.8270065Z remote: Counting objects: 26% (50/192) 2021-05-17T17:01:11.8270558Z remote: Counting objects: 27% (52/192) 2021-05-17T17:01:11.8271061Z remote: Counting objects: 28% (54/192) 2021-05-17T17:01:11.8271569Z remote: Counting objects: 29% (56/192) 2021-05-17T17:01:11.8272060Z remote: Counting objects: 30% (58/192) 2021-05-17T17:01:11.8272575Z remote: Counting objects: 31% (60/192) 2021-05-17T17:01:11.8273071Z remote: Counting objects: 32% (62/192) 2021-05-17T17:01:11.8273573Z remote: Counting objects: 33% (64/192) 2021-05-17T17:01:11.8274078Z remote: Counting objects: 34% (66/192) 2021-05-17T17:01:11.8274567Z remote: Counting objects: 35% (68/192) 2021-05-17T17:01:11.8275072Z remote: Counting objects: 36% (70/192) 2021-05-17T17:01:11.8275566Z remote: Counting objects: 37% (72/192) 2021-05-17T17:01:11.8276068Z remote: Counting objects: 38% (73/192) 2021-05-17T17:01:11.8276585Z remote: Counting objects: 39% (75/192) 2021-05-17T17:01:11.8277084Z remote: Counting objects: 40% (77/192) 2021-05-17T17:01:11.8277594Z remote: Counting objects: 41% (79/192) 2021-05-17T17:01:11.8278101Z remote: Counting objects: 42% (81/192) 2021-05-17T17:01:11.8278600Z remote: Counting objects: 43% (83/192) 2021-05-17T17:01:11.8279109Z remote: Counting objects: 44% (85/192) 2021-05-17T17:01:11.8279650Z remote: Counting objects: 45% (87/192) 2021-05-17T17:01:11.8280156Z remote: Counting objects: 46% (89/192) 2021-05-17T17:01:11.8280659Z remote: Counting objects: 47% (91/192) 2021-05-17T17:01:11.8281151Z remote: Counting objects: 48% (93/192) 2021-05-17T17:01:11.8281652Z remote: Counting objects: 49% (95/192) 2021-05-17T17:01:11.8282145Z remote: Counting objects: 50% (96/192) 2021-05-17T17:01:11.8282652Z remote: Counting objects: 51% (98/192) 2021-05-17T17:01:11.8283165Z remote: Counting objects: 52% (100/192) 2021-05-17T17:01:11.8283740Z remote: Counting objects: 53% (102/192) 2021-05-17T17:01:11.8284266Z remote: Counting objects: 54% (104/192) 2021-05-17T17:01:11.8284784Z remote: Counting objects: 55% (106/192) 2021-05-17T17:01:11.8285285Z remote: Counting objects: 56% (108/192) 2021-05-17T17:01:11.8285796Z remote: Counting objects: 57% (110/192) 2021-05-17T17:01:11.8286294Z remote: Counting objects: 58% (112/192) 2021-05-17T17:01:11.8286803Z remote: Counting objects: 59% (114/192) 2021-05-17T17:01:11.8287313Z remote: Counting objects: 60% (116/192) 2021-05-17T17:01:11.8287811Z remote: Counting objects: 61% (118/192) 2021-05-17T17:01:11.8288344Z remote: Counting objects: 62% (120/192) 2021-05-17T17:01:11.8288862Z remote: Counting objects: 63% (121/192) 2021-05-17T17:01:11.8289354Z remote: Counting objects: 64% (123/192) 2021-05-17T17:01:11.8289861Z remote: Counting objects: 65% (125/192) 2021-05-17T17:01:11.8290372Z remote: Counting objects: 66% (127/192) 2021-05-17T17:01:11.8290867Z remote: Counting objects: 67% (129/192) 2021-05-17T17:01:11.8291371Z remote: Counting objects: 68% (131/192) 2021-05-17T17:01:11.8291865Z remote: Counting objects: 69% (133/192) 2021-05-17T17:01:11.8292397Z remote: Counting objects: 70% (135/192) 2021-05-17T17:01:11.8292908Z remote: Counting objects: 71% (137/192) 2021-05-17T17:01:11.8293400Z remote: Counting objects: 72% (139/192) 2021-05-17T17:01:11.8293908Z remote: Counting objects: 73% (141/192) 2021-05-17T17:01:11.8294401Z remote: Counting objects: 74% (143/192) 2021-05-17T17:01:11.8294910Z remote: Counting objects: 75% (144/192) 2021-05-17T17:01:11.8295421Z remote: Counting objects: 76% (146/192) 2021-05-17T17:01:11.8295918Z remote: Counting objects: 77% (148/192) 2021-05-17T17:01:11.8296423Z remote: Counting objects: 78% (150/192) 2021-05-17T17:01:11.8296993Z remote: Counting objects: 79% (152/192) 2021-05-17T17:01:11.8297488Z remote: Counting objects: 80% (154/192) 2021-05-17T17:01:11.8298001Z remote: Counting objects: 81% (156/192) 2021-05-17T17:01:11.8298500Z remote: Counting objects: 82% (158/192) 2021-05-17T17:01:11.8299004Z remote: Counting objects: 83% (160/192) 2021-05-17T17:01:11.8299512Z remote: Counting objects: 84% (162/192) 2021-05-17T17:01:11.8300003Z remote: Counting objects: 85% (164/192) 2021-05-17T17:01:11.8300512Z remote: Counting objects: 86% (166/192) 2021-05-17T17:01:11.8301242Z remote: Counting objects: 87% (168/192) 2021-05-17T17:01:11.8301754Z remote: Counting objects: 88% (169/192) 2021-05-17T17:01:11.8302262Z remote: Counting objects: 89% (171/192) 2021-05-17T17:01:11.8302761Z remote: Counting objects: 90% (173/192) 2021-05-17T17:01:11.8303273Z remote: Counting objects: 91% (175/192) 2021-05-17T17:01:11.8303793Z remote: Counting objects: 92% (177/192) 2021-05-17T17:01:11.8304296Z remote: Counting objects: 93% (179/192) 2021-05-17T17:01:11.8304805Z remote: Counting objects: 94% (181/192) 2021-05-17T17:01:11.8305301Z remote: Counting objects: 95% (183/192) 2021-05-17T17:01:11.8305811Z remote: Counting objects: 96% (185/192) 2021-05-17T17:01:11.8306324Z remote: Counting objects: 97% (187/192) 2021-05-17T17:01:11.8306821Z remote: Counting objects: 98% (189/192) 2021-05-17T17:01:11.8307333Z remote: Counting objects: 99% (191/192) 2021-05-17T17:01:11.8307826Z remote: Counting objects: 100% (192/192) 2021-05-17T17:01:11.8308363Z remote: Counting objects: 100% (192/192), done. 2021-05-17T17:01:11.8308929Z remote: Compressing objects: 0% (1/160) 2021-05-17T17:01:11.8309474Z remote: Compressing objects: 1% (2/160) 2021-05-17T17:01:11.8310030Z remote: Compressing objects: 2% (4/160) 2021-05-17T17:01:11.8310688Z remote: Compressing objects: 3% (5/160) 2021-05-17T17:01:11.8311233Z remote: Compressing objects: 4% (7/160) 2021-05-17T17:01:11.8311785Z remote: Compressing objects: 5% (8/160) 2021-05-17T17:01:11.8312329Z remote: Compressing objects: 6% (10/160) 2021-05-17T17:01:11.8312894Z remote: Compressing objects: 7% (12/160) 2021-05-17T17:01:11.8313454Z remote: Compressing objects: 8% (13/160) 2021-05-17T17:01:11.8314003Z remote: Compressing objects: 9% (15/160) 2021-05-17T17:01:11.8314563Z remote: Compressing objects: 10% (16/160) 2021-05-17T17:01:11.8315128Z remote: Compressing objects: 11% (18/160) 2021-05-17T17:01:11.8315668Z remote: Compressing objects: 12% (20/160) 2021-05-17T17:01:11.8316225Z remote: Compressing objects: 13% (21/160) 2021-05-17T17:01:11.8316765Z remote: Compressing objects: 14% (23/160) 2021-05-17T17:01:11.8317323Z remote: Compressing objects: 15% (24/160) 2021-05-17T17:01:11.8317896Z remote: Compressing objects: 16% (26/160) 2021-05-17T17:01:11.8318439Z remote: Compressing objects: 17% (28/160) 2021-05-17T17:01:11.8318996Z remote: Compressing objects: 18% (29/160) 2021-05-17T17:01:11.8319556Z remote: Compressing objects: 19% (31/160) 2021-05-17T17:01:11.8320120Z remote: Compressing objects: 20% (32/160) 2021-05-17T17:01:11.8320682Z remote: Compressing objects: 21% (34/160) 2021-05-17T17:01:11.8321220Z remote: Compressing objects: 22% (36/160) 2021-05-17T17:01:11.8321773Z remote: Compressing objects: 23% (37/160) 2021-05-17T17:01:11.8322325Z remote: Compressing objects: 24% (39/160) 2021-05-17T17:01:11.8322863Z remote: Compressing objects: 25% (40/160) 2021-05-17T17:01:11.8323422Z remote: Compressing objects: 26% (42/160) 2021-05-17T17:01:11.8323961Z remote: Compressing objects: 27% (44/160) 2021-05-17T17:01:11.8324521Z remote: Compressing objects: 28% (45/160) 2021-05-17T17:01:11.8325149Z remote: Compressing objects: 29% (47/160) 2021-05-17T17:01:11.8325689Z remote: Compressing objects: 30% (48/160) 2021-05-17T17:01:11.8326253Z remote: Compressing objects: 31% (50/160) 2021-05-17T17:01:11.8326810Z remote: Compressing objects: 32% (52/160) 2021-05-17T17:01:11.8327367Z remote: Compressing objects: 33% (53/160) 2021-05-17T17:01:11.8327930Z remote: Compressing objects: 34% (55/160) 2021-05-17T17:01:11.8328471Z remote: Compressing objects: 35% (56/160) 2021-05-17T17:01:11.8329028Z remote: Compressing objects: 36% (58/160) 2021-05-17T17:01:11.8329585Z remote: Compressing objects: 37% (60/160) 2021-05-17T17:01:11.8330164Z remote: Compressing objects: 38% (61/160) 2021-05-17T17:01:11.8330721Z remote: Compressing objects: 39% (63/160) 2021-05-17T17:01:11.8331257Z remote: Compressing objects: 40% (64/160) 2021-05-17T17:01:11.8331818Z remote: Compressing objects: 41% (66/160) 2021-05-17T17:01:11.8332391Z remote: Compressing objects: 42% (68/160) 2021-05-17T17:01:11.8332933Z remote: Compressing objects: 43% (69/160) 2021-05-17T17:01:11.8333488Z remote: Compressing objects: 44% (71/160) 2021-05-17T17:01:11.8334066Z remote: Compressing objects: 45% (72/160) 2021-05-17T17:01:11.8334607Z remote: Compressing objects: 46% (74/160) 2021-05-17T17:01:11.8335160Z remote: Compressing objects: 47% (76/160) 2021-05-17T17:01:11.8335702Z remote: Compressing objects: 48% (77/160) 2021-05-17T17:01:11.8336265Z remote: Compressing objects: 49% (79/160) 2021-05-17T17:01:11.8336816Z remote: Compressing objects: 50% (80/160) 2021-05-17T17:01:11.8337355Z remote: Compressing objects: 51% (82/160) 2021-05-17T17:01:11.8337918Z remote: Compressing objects: 52% (84/160) 2021-05-17T17:01:11.8338456Z remote: Compressing objects: 53% (85/160) 2021-05-17T17:01:11.8339062Z remote: Compressing objects: 54% (87/160) 2021-05-17T17:01:11.8339622Z remote: Compressing objects: 55% (88/160) 2021-05-17T17:01:11.8340165Z remote: Compressing objects: 56% (90/160) 2021-05-17T17:01:11.8340878Z remote: Compressing objects: 57% (92/160) 2021-05-17T17:01:11.8341438Z remote: Compressing objects: 58% (93/160) 2021-05-17T17:01:11.8341981Z remote: Compressing objects: 59% (95/160) 2021-05-17T17:01:11.8342537Z remote: Compressing objects: 60% (96/160) 2021-05-17T17:01:11.8343078Z remote: Compressing objects: 61% (98/160) 2021-05-17T17:01:11.8343638Z remote: Compressing objects: 62% (100/160) 2021-05-17T17:01:11.8344205Z remote: Compressing objects: 63% (101/160) 2021-05-17T17:01:11.8344752Z remote: Compressing objects: 64% (103/160) 2021-05-17T17:01:11.8345316Z remote: Compressing objects: 65% (104/160) 2021-05-17T17:01:11.8345876Z remote: Compressing objects: 66% (106/160) 2021-05-17T17:01:11.8346425Z remote: Compressing objects: 67% (108/160) 2021-05-17T17:01:11.8346983Z remote: Compressing objects: 68% (109/160) 2021-05-17T17:01:11.8347525Z remote: Compressing objects: 69% (111/160) 2021-05-17T17:01:11.8348079Z remote: Compressing objects: 70% (112/160) 2021-05-17T17:01:11.8348643Z remote: Compressing objects: 71% (114/160) 2021-05-17T17:01:11.8349183Z remote: Compressing objects: 72% (116/160) 2021-05-17T17:01:11.8349741Z remote: Compressing objects: 73% (117/160) 2021-05-17T17:01:11.8350288Z remote: Compressing objects: 74% (119/160) 2021-05-17T17:01:11.8350840Z remote: Compressing objects: 75% (120/160) 2021-05-17T17:01:11.8351392Z remote: Compressing objects: 76% (122/160) 2021-05-17T17:01:11.8351928Z remote: Compressing objects: 77% (124/160) 2021-05-17T17:01:11.8352482Z remote: Compressing objects: 78% (125/160) 2021-05-17T17:01:11.8353036Z remote: Compressing objects: 79% (127/160) 2021-05-17T17:01:11.8353665Z remote: Compressing objects: 80% (128/160) 2021-05-17T17:01:11.8354227Z remote: Compressing objects: 81% (130/160) 2021-05-17T17:01:11.8354765Z remote: Compressing objects: 82% (132/160) 2021-05-17T17:01:11.8355320Z remote: Compressing objects: 83% (133/160) 2021-05-17T17:01:11.8355875Z remote: Compressing objects: 84% (135/160) 2021-05-17T17:01:11.8356415Z remote: Compressing objects: 85% (136/160) 2021-05-17T17:01:11.8356967Z remote: Compressing objects: 86% (138/160) 2021-05-17T17:01:11.8357502Z remote: Compressing objects: 87% (140/160) 2021-05-17T17:01:11.8358109Z remote: Compressing objects: 88% (141/160) 2021-05-17T17:01:11.8358642Z remote: Compressing objects: 89% (143/160) 2021-05-17T17:01:11.8359196Z remote: Compressing objects: 90% (144/160) 2021-05-17T17:01:11.8359736Z remote: Compressing objects: 91% (146/160) 2021-05-17T17:01:11.8360289Z remote: Compressing objects: 92% (148/160) 2021-05-17T17:01:11.8360847Z remote: Compressing objects: 93% (149/160) 2021-05-17T17:01:11.8361384Z remote: Compressing objects: 94% (151/160) 2021-05-17T17:01:11.8361939Z remote: Compressing objects: 95% (152/160) 2021-05-17T17:01:11.8362492Z remote: Compressing objects: 96% (154/160) 2021-05-17T17:01:11.8363032Z remote: Compressing objects: 97% (156/160) 2021-05-17T17:01:11.8363588Z remote: Compressing objects: 98% (157/160) 2021-05-17T17:01:11.8364128Z remote: Compressing objects: 99% (159/160) 2021-05-17T17:01:11.8364680Z remote: Compressing objects: 100% (160/160) 2021-05-17T17:01:11.8365273Z remote: Compressing objects: 100% (160/160), done. 2021-05-17T17:01:11.8365789Z Receiving objects: 0% (1/192) 2021-05-17T17:01:11.8366252Z Receiving objects: 1% (2/192) 2021-05-17T17:01:11.8366743Z Receiving objects: 2% (4/192) 2021-05-17T17:01:11.8367184Z Receiving objects: 3% (6/192) 2021-05-17T17:01:11.8367698Z Receiving objects: 4% (8/192) 2021-05-17T17:01:11.8368147Z Receiving objects: 5% (10/192) 2021-05-17T17:01:11.8368613Z Receiving objects: 6% (12/192) 2021-05-17T17:01:11.8369068Z Receiving objects: 7% (14/192) 2021-05-17T17:01:11.8369508Z Receiving objects: 8% (16/192) 2021-05-17T17:01:11.8369959Z Receiving objects: 9% (18/192) 2021-05-17T17:01:11.8370403Z Receiving objects: 10% (20/192) 2021-05-17T17:01:11.8370852Z Receiving objects: 11% (22/192) 2021-05-17T17:01:11.8371348Z Receiving objects: 12% (24/192) 2021-05-17T17:01:11.8371787Z Receiving objects: 13% (25/192) 2021-05-17T17:01:11.8372239Z Receiving objects: 14% (27/192) 2021-05-17T17:01:11.8372679Z Receiving objects: 15% (29/192) 2021-05-17T17:01:11.8373129Z Receiving objects: 16% (31/192) 2021-05-17T17:01:11.8373592Z Receiving objects: 17% (33/192) 2021-05-17T17:01:11.8374033Z Receiving objects: 18% (35/192) 2021-05-17T17:01:11.8374480Z Receiving objects: 19% (37/192) 2021-05-17T17:01:11.8374920Z Receiving objects: 20% (39/192) 2021-05-17T17:01:11.8375382Z Receiving objects: 21% (41/192) 2021-05-17T17:01:11.8375836Z Receiving objects: 22% (43/192) 2021-05-17T17:01:11.8376275Z Receiving objects: 23% (45/192) 2021-05-17T17:01:11.8376725Z Receiving objects: 24% (47/192) 2021-05-17T17:01:11.8377169Z Receiving objects: 25% (48/192) 2021-05-17T17:01:11.8377623Z Receiving objects: 26% (50/192) 2021-05-17T17:01:11.8378077Z Receiving objects: 27% (52/192) 2021-05-17T17:01:11.8378513Z Receiving objects: 28% (54/192) 2021-05-17T17:01:11.8378962Z Receiving objects: 29% (56/192) 2021-05-17T17:01:11.8379413Z Receiving objects: 30% (58/192) 2021-05-17T17:01:11.8379853Z Receiving objects: 31% (60/192) 2021-05-17T17:01:11.8380304Z Receiving objects: 32% (62/192) 2021-05-17T17:01:11.8380885Z Receiving objects: 33% (64/192) 2021-05-17T17:01:11.8381338Z Receiving objects: 34% (66/192) 2021-05-17T17:01:11.8381793Z Receiving objects: 35% (68/192) 2021-05-17T17:01:11.8382235Z Receiving objects: 36% (70/192) 2021-05-17T17:01:11.8382775Z Receiving objects: 37% (72/192) 2021-05-17T17:01:11.8431035Z Receiving objects: 38% (73/192) 2021-05-17T17:01:11.8790333Z Receiving objects: 39% (75/192) 2021-05-17T17:01:11.9013761Z Receiving objects: 40% (77/192) 2021-05-17T17:01:11.9186063Z Receiving objects: 41% (79/192) 2021-05-17T17:01:11.9242687Z Receiving objects: 42% (81/192) 2021-05-17T17:01:11.9436397Z Receiving objects: 43% (83/192) 2021-05-17T17:01:11.9479419Z Receiving objects: 44% (85/192) 2021-05-17T17:01:11.9479938Z Receiving objects: 45% (87/192) 2021-05-17T17:01:11.9480407Z Receiving objects: 46% (89/192) 2021-05-17T17:01:11.9480856Z Receiving objects: 47% (91/192) 2021-05-17T17:01:11.9481322Z Receiving objects: 48% (93/192) 2021-05-17T17:01:11.9481778Z Receiving objects: 49% (95/192) 2021-05-17T17:01:11.9482229Z Receiving objects: 50% (96/192) 2021-05-17T17:01:11.9482683Z Receiving objects: 51% (98/192) 2021-05-17T17:01:11.9483127Z Receiving objects: 52% (100/192) 2021-05-17T17:01:11.9483591Z Receiving objects: 53% (102/192) 2021-05-17T17:01:11.9484074Z Receiving objects: 54% (104/192) 2021-05-17T17:01:11.9484941Z Receiving objects: 55% (106/192) 2021-05-17T17:01:11.9486455Z Receiving objects: 56% (108/192) 2021-05-17T17:01:11.9486931Z Receiving objects: 57% (110/192) 2021-05-17T17:01:11.9487387Z Receiving objects: 58% (112/192) 2021-05-17T17:01:11.9487845Z Receiving objects: 59% (114/192) 2021-05-17T17:01:11.9488288Z Receiving objects: 60% (116/192) 2021-05-17T17:01:11.9488738Z Receiving objects: 61% (118/192) 2021-05-17T17:01:11.9489177Z Receiving objects: 62% (120/192) 2021-05-17T17:01:11.9489632Z Receiving objects: 63% (121/192) 2021-05-17T17:01:11.9490085Z Receiving objects: 64% (123/192) 2021-05-17T17:01:11.9490528Z Receiving objects: 65% (125/192) 2021-05-17T17:01:11.9490982Z Receiving objects: 66% (127/192) 2021-05-17T17:01:11.9491436Z Receiving objects: 67% (129/192) 2021-05-17T17:01:11.9511307Z Receiving objects: 68% (131/192) 2021-05-17T17:01:11.9514229Z Receiving objects: 69% (133/192) 2021-05-17T17:01:11.9515695Z remote: Total 192 (delta 62), reused 80 (delta 26), pack-reused 0 2021-05-17T17:01:11.9522510Z Receiving objects: 70% (135/192) 2021-05-17T17:01:11.9523011Z Receiving objects: 71% (137/192) 2021-05-17T17:01:11.9523475Z Receiving objects: 72% (139/192) 2021-05-17T17:01:11.9523925Z Receiving objects: 73% (141/192) 2021-05-17T17:01:11.9524388Z Receiving objects: 74% (143/192) 2021-05-17T17:01:11.9524831Z Receiving objects: 75% (144/192) 2021-05-17T17:01:11.9525289Z Receiving objects: 76% (146/192) 2021-05-17T17:01:11.9525750Z Receiving objects: 77% (148/192) 2021-05-17T17:01:11.9526192Z Receiving objects: 78% (150/192) 2021-05-17T17:01:11.9526655Z Receiving objects: 79% (152/192) 2021-05-17T17:01:11.9527096Z Receiving objects: 80% (154/192) 2021-05-17T17:01:11.9527553Z Receiving objects: 81% (156/192) 2021-05-17T17:01:11.9528009Z Receiving objects: 82% (158/192) 2021-05-17T17:01:11.9528453Z Receiving objects: 83% (160/192) 2021-05-17T17:01:11.9529093Z Receiving objects: 84% (162/192) 2021-05-17T17:01:11.9529682Z Receiving objects: 85% (164/192) 2021-05-17T17:01:11.9530215Z Receiving objects: 86% (166/192) 2021-05-17T17:01:11.9530765Z Receiving objects: 87% (168/192) 2021-05-17T17:01:11.9531295Z Receiving objects: 88% (169/192) 2021-05-17T17:01:11.9531764Z Receiving objects: 89% (171/192) 2021-05-17T17:01:11.9532309Z Receiving objects: 90% (173/192) 2021-05-17T17:01:11.9533172Z Receiving objects: 91% (175/192) 2021-05-17T17:01:11.9534180Z Receiving objects: 92% (177/192) 2021-05-17T17:01:11.9535969Z Receiving objects: 93% (179/192) 2021-05-17T17:01:11.9537013Z Receiving objects: 94% (181/192) 2021-05-17T17:01:11.9537927Z Receiving objects: 95% (183/192) 2021-05-17T17:01:11.9538807Z Receiving objects: 96% (185/192) 2021-05-17T17:01:11.9539703Z Receiving objects: 97% (187/192) 2021-05-17T17:01:11.9544833Z Receiving objects: 98% (189/192) 2021-05-17T17:01:11.9545313Z Receiving objects: 99% (191/192) 2021-05-17T17:01:11.9545763Z Receiving objects: 100% (192/192) 2021-05-17T17:01:11.9546446Z Receiving objects: 100% (192/192), 2.04 MiB | 11.27 MiB/s, done. 2021-05-17T17:01:11.9547037Z Resolving deltas: 0% (0/62) 2021-05-17T17:01:11.9548483Z Resolving deltas: 1% (1/62) 2021-05-17T17:01:11.9550025Z Resolving deltas: 3% (2/62) 2021-05-17T17:01:11.9551968Z Resolving deltas: 4% (3/62) 2021-05-17T17:01:11.9553326Z Resolving deltas: 6% (4/62) 2021-05-17T17:01:11.9554054Z Resolving deltas: 8% (5/62) 2021-05-17T17:01:11.9558598Z Resolving deltas: 9% (6/62) 2021-05-17T17:01:11.9560316Z Resolving deltas: 11% (7/62) 2021-05-17T17:01:11.9562473Z Resolving deltas: 12% (8/62) 2021-05-17T17:01:11.9564505Z Resolving deltas: 14% (9/62) 2021-05-17T17:01:11.9566305Z Resolving deltas: 16% (10/62) 2021-05-17T17:01:11.9568236Z Resolving deltas: 17% (11/62) 2021-05-17T17:01:11.9570125Z Resolving deltas: 19% (12/62) 2021-05-17T17:01:11.9571940Z Resolving deltas: 20% (13/62) 2021-05-17T17:01:11.9573755Z Resolving deltas: 22% (14/62) 2021-05-17T17:01:11.9575326Z Resolving deltas: 24% (15/62) 2021-05-17T17:01:11.9576905Z Resolving deltas: 25% (16/62) 2021-05-17T17:01:11.9578555Z Resolving deltas: 27% (17/62) 2021-05-17T17:01:11.9580207Z Resolving deltas: 29% (18/62) 2021-05-17T17:01:11.9582188Z Resolving deltas: 30% (19/62) 2021-05-17T17:01:11.9584097Z Resolving deltas: 32% (20/62) 2021-05-17T17:01:11.9585704Z Resolving deltas: 33% (21/62) 2021-05-17T17:01:11.9587803Z Resolving deltas: 35% (22/62) 2021-05-17T17:01:11.9589643Z Resolving deltas: 37% (23/62) 2021-05-17T17:01:11.9591688Z Resolving deltas: 38% (24/62) 2021-05-17T17:01:11.9594145Z Resolving deltas: 40% (25/62) 2021-05-17T17:01:11.9596715Z Resolving deltas: 41% (26/62) 2021-05-17T17:01:11.9599258Z Resolving deltas: 43% (27/62) 2021-05-17T17:01:11.9599705Z Resolving deltas: 45% (28/62) 2021-05-17T17:01:11.9601442Z Resolving deltas: 46% (29/62) 2021-05-17T17:01:11.9603769Z Resolving deltas: 48% (30/62) 2021-05-17T17:01:11.9606694Z Resolving deltas: 50% (31/62) 2021-05-17T17:01:11.9607203Z Resolving deltas: 51% (32/62) 2021-05-17T17:01:11.9609991Z Resolving deltas: 53% (33/62) 2021-05-17T17:01:11.9610707Z Resolving deltas: 54% (34/62) 2021-05-17T17:01:11.9612875Z Resolving deltas: 56% (35/62) 2021-05-17T17:01:11.9613888Z Resolving deltas: 58% (36/62) 2021-05-17T17:01:11.9614733Z Resolving deltas: 59% (37/62) 2021-05-17T17:01:11.9615621Z Resolving deltas: 61% (38/62) 2021-05-17T17:01:11.9616383Z Resolving deltas: 62% (39/62) 2021-05-17T17:01:11.9617096Z Resolving deltas: 64% (40/62) 2021-05-17T17:01:11.9617841Z Resolving deltas: 66% (41/62) 2021-05-17T17:01:11.9618783Z Resolving deltas: 67% (42/62) 2021-05-17T17:01:11.9619365Z Resolving deltas: 69% (43/62) 2021-05-17T17:01:11.9620056Z Resolving deltas: 70% (44/62) 2021-05-17T17:01:11.9620870Z Resolving deltas: 72% (45/62) 2021-05-17T17:01:11.9622056Z Resolving deltas: 74% (46/62) 2021-05-17T17:01:11.9622866Z Resolving deltas: 75% (47/62) 2021-05-17T17:01:11.9623706Z Resolving deltas: 77% (48/62) 2021-05-17T17:01:11.9624422Z Resolving deltas: 79% (49/62) 2021-05-17T17:01:11.9625441Z Resolving deltas: 80% (50/62) 2021-05-17T17:01:11.9627383Z Resolving deltas: 82% (51/62) 2021-05-17T17:01:11.9628935Z Resolving deltas: 83% (52/62) 2021-05-17T17:01:11.9630082Z Resolving deltas: 85% (53/62) 2021-05-17T17:01:11.9631610Z Resolving deltas: 87% (54/62) 2021-05-17T17:01:11.9634220Z Resolving deltas: 88% (55/62) 2021-05-17T17:01:11.9634698Z Resolving deltas: 90% (56/62) 2021-05-17T17:01:11.9635128Z Resolving deltas: 91% (57/62) 2021-05-17T17:01:11.9635566Z Resolving deltas: 93% (58/62) 2021-05-17T17:01:11.9637270Z Resolving deltas: 95% (59/62) 2021-05-17T17:01:11.9637738Z Resolving deltas: 98% (61/62) 2021-05-17T17:01:11.9641371Z Resolving deltas: 100% (62/62) 2021-05-17T17:01:11.9641886Z Resolving deltas: 100% (62/62), done. 2021-05-17T17:01:11.9728118Z From https://github.com/neuroconductor/spm12r 2021-05-17T17:01:11.9729551Z * [new ref] ba1508c99cb4659c2bb8fe1550c66a5b38da2dd0 -> 2.8.1.s 2021-05-17T17:01:11.9746411Z ##[endgroup] 2021-05-17T17:01:11.9747175Z ##[group]Determining the checkout info 2021-05-17T17:01:11.9749069Z ##[endgroup] 2021-05-17T17:01:11.9749669Z ##[group]Checking out the ref 2021-05-17T17:01:11.9754652Z [command]/usr/bin/git checkout --progress --force refs/tags/2.8.1.s 2021-05-17T17:01:12.0010781Z Note: switching to 'refs/tags/2.8.1.s'. 2021-05-17T17:01:12.0028945Z 2021-05-17T17:01:12.0030449Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-17T17:01:12.0031524Z changes and commit them, and you can discard any commits you make in this 2021-05-17T17:01:12.0032529Z state without impacting any branches by switching back to a branch. 2021-05-17T17:01:12.0033172Z 2021-05-17T17:01:12.0033872Z If you want to create a new branch to retain commits you create, you may 2021-05-17T17:01:12.0035035Z do so (now or later) by using -c with the switch command. Example: 2021-05-17T17:01:12.0035647Z 2021-05-17T17:01:12.0036417Z git switch -c 2021-05-17T17:01:12.0036976Z 2021-05-17T17:01:12.0037556Z Or undo this operation with: 2021-05-17T17:01:12.0038031Z 2021-05-17T17:01:12.0038745Z git switch - 2021-05-17T17:01:12.0039157Z 2021-05-17T17:01:12.0039984Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-17T17:01:12.0040719Z 2021-05-17T17:01:12.0041321Z HEAD is now at ba1508c Version id 77 stable 2021-05-17T17:01:12.0046501Z ##[endgroup] 2021-05-17T17:01:12.0078799Z [command]/usr/bin/git log -1 --format='%H' 2021-05-17T17:01:12.0106349Z 'ba1508c99cb4659c2bb8fe1550c66a5b38da2dd0' 2021-05-17T17:01:12.0291045Z ##[group]Run r-lib/actions/setup-r@master 2021-05-17T17:01:12.0291501Z with: 2021-05-17T17:01:12.0291866Z r-version: devel 2021-05-17T17:01:12.0292233Z Ncpus: 1 2021-05-17T17:01:12.0292620Z crayon.enabled: NULL 2021-05-17T17:01:12.0293138Z remove-openmp-macos: true 2021-05-17T17:01:12.0293673Z http-user-agent: default 2021-05-17T17:01:12.0294123Z install-r: true 2021-05-17T17:01:12.0294678Z windows-path-include-mingw: true 2021-05-17T17:01:12.0295205Z env: 2021-05-17T17:01:12.0295626Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:01:12.0296068Z TIC_DEPLOY_KEY: 2021-05-17T17:01:12.0296849Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:01:12.0298152Z GITHUB_PAT: *** 2021-05-17T17:01:12.0298928Z COVERALLS_TOKEN: *** 2021-05-17T17:01:12.0299405Z continue-on-error: true 2021-05-17T17:01:12.0299869Z VDIFFR_RUN_TESTS: 2021-05-17T17:01:12.0300235Z ##[endgroup] 2021-05-17T17:01:12.8244602Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-17T17:01:14.3932893Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T17:01:14.3935811Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-17T17:01:14.3937701Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-17T17:01:14.3954496Z Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-17T17:01:14.4233449Z Get:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-17T17:01:14.4399411Z Hit:6 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T17:01:14.5273511Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T17:01:14.6262408Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-17T17:01:14.6455460Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [222 kB] 2021-05-17T17:01:14.6475401Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-17T17:01:14.6516004Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-17T17:01:14.6545492Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-17T17:01:14.6625314Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [774 kB] 2021-05-17T17:01:14.6685693Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [166 kB] 2021-05-17T17:01:14.6785167Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.4 kB] 2021-05-17T17:01:14.6823284Z Get:16 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-17T17:01:14.8534355Z Get:17 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.2 kB] 2021-05-17T17:01:14.9246288Z Hit:18 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T17:01:14.9537800Z Get:19 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [655 kB] 2021-05-17T17:01:15.0147052Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [132 kB] 2021-05-17T17:01:15.0184363Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-17T17:01:15.0216544Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-17T17:01:15.0218600Z Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-17T17:01:15.0220404Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [565 kB] 2021-05-17T17:01:15.0307552Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.0 kB] 2021-05-17T17:01:21.4179049Z Fetched 4463 kB in 1s (4475 kB/s) 2021-05-17T17:01:22.2558549Z Reading package lists... 2021-05-17T17:01:22.2788682Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-17T17:01:24.1588984Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-17T17:01:24.2218534Z Reading package lists... 2021-05-17T17:01:24.4003431Z Building dependency tree... 2021-05-17T17:01:24.4017415Z Reading state information... 2021-05-17T17:01:24.5633169Z The following additional packages will be installed: 2021-05-17T17:01:24.5634851Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-17T17:01:24.5636269Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-17T17:01:24.5637911Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-17T17:01:24.5640511Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-17T17:01:24.5642190Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-17T17:01:24.5643605Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-17T17:01:24.5645116Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-17T17:01:24.5646782Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-17T17:01:24.5648280Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-17T17:01:24.5649702Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-17T17:01:24.5651172Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-17T17:01:24.5652690Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-17T17:01:24.5654326Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-17T17:01:24.5655931Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-17T17:01:24.5657326Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-17T17:01:24.5658720Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-17T17:01:24.5660083Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T17:01:24.5662134Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T17:01:24.5663872Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T17:01:24.5665391Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T17:01:24.5666722Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T17:01:24.5668394Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T17:01:24.5669961Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T17:01:24.5671608Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T17:01:24.5673128Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T17:01:24.5674592Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T17:01:24.5676140Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T17:01:24.5677691Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T17:01:24.5679260Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T17:01:24.5680849Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T17:01:24.5682408Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T17:01:24.5684068Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T17:01:24.5685757Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T17:01:24.5687282Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T17:01:24.5688748Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T17:01:24.5690307Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T17:01:24.5691729Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T17:01:24.5693977Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-17T17:01:24.5694602Z Suggested packages: 2021-05-17T17:01:24.5695369Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-17T17:01:24.5696464Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-17T17:01:24.5697634Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-17T17:01:24.5698830Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-17T17:01:24.5700004Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-17T17:01:24.5701250Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-17T17:01:24.5702354Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-17T17:01:24.5703615Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-17T17:01:24.5705067Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-17T17:01:24.5706325Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-17T17:01:25.0237768Z The following NEW packages will be installed: 2021-05-17T17:01:25.0242323Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-17T17:01:25.0244753Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-17T17:01:25.0247646Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-17T17:01:25.0249526Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-17T17:01:25.0251525Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-17T17:01:25.0253303Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-17T17:01:25.0259829Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-17T17:01:25.0261620Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-17T17:01:25.0263211Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-17T17:01:25.0264766Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-17T17:01:25.0269305Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-17T17:01:25.0270633Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-17T17:01:25.0272148Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-17T17:01:25.0273532Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-17T17:01:25.0275111Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-17T17:01:25.0276366Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-17T17:01:25.0277727Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T17:01:25.0279253Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T17:01:25.0280777Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T17:01:25.0282068Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T17:01:25.0283231Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T17:01:25.0284423Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T17:01:25.0285762Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T17:01:25.0287207Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T17:01:25.0288539Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T17:01:25.0289783Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T17:01:25.0291130Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T17:01:25.0292467Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T17:01:25.0293829Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T17:01:25.0295297Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T17:01:25.0296653Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T17:01:25.0298115Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T17:01:25.0299579Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T17:01:25.0301144Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T17:01:25.0302466Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T17:01:25.0303791Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T17:01:25.0305038Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T17:01:25.0306061Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-17T17:01:25.0523991Z 0 upgraded, 130 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:01:25.0531540Z Need to get 8648 kB of archives. 2021-05-17T17:01:25.0532512Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-17T17:01:25.0534326Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-17T17:01:25.0548714Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-17T17:01:25.0580907Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-17T17:01:25.0600351Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-17T17:01:25.0609344Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-17T17:01:25.0623731Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-17T17:01:25.0629110Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-17T17:01:25.0637050Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-17T17:01:25.0641250Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-17T17:01:25.0645812Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-17T17:01:25.0650524Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-17T17:01:25.0655740Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-17T17:01:25.0667556Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-17T17:01:25.0672348Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-17T17:01:25.0678807Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-17T17:01:25.0685435Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-17T17:01:25.0695027Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-17T17:01:25.0705413Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-17T17:01:25.0713263Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-17T17:01:25.0808923Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-17T17:01:25.0817019Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-17T17:01:25.0833653Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-17T17:01:25.0842860Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-17T17:01:25.0856655Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-17T17:01:25.0868053Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-17T17:01:25.0939039Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-17T17:01:25.0954676Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-17T17:01:25.1023593Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-17T17:01:25.1025603Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-17T17:01:25.1027574Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-17T17:01:25.1029628Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-17T17:01:25.1040568Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-17T17:01:25.1042687Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-17T17:01:25.1045574Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-17T17:01:25.1047408Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-17T17:01:25.1049213Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-17T17:01:25.1051095Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-17T17:01:25.1052747Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-17T17:01:25.1054493Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-17T17:01:25.1056231Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-17T17:01:25.1057982Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-17T17:01:25.1059839Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-17T17:01:25.1061651Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-17T17:01:25.1063293Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-17T17:01:25.1065039Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-17T17:01:25.1069887Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-17T17:01:25.1082250Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-17T17:01:25.1087240Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-17T17:01:25.1092077Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-17T17:01:25.1097280Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-17T17:01:25.1103431Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-17T17:01:25.1131038Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-17T17:01:25.1141549Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-17T17:01:25.1144907Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-17T17:01:25.1163941Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-17T17:01:25.1165638Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-17T17:01:25.1168234Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-17T17:01:25.1169782Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-17T17:01:25.1176149Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-17T17:01:25.1182802Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-17T17:01:25.1210937Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-17T17:01:25.1219949Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-17T17:01:25.1228999Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-17T17:01:25.1234343Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-17T17:01:25.1238904Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-17T17:01:25.1245308Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-17T17:01:25.1249447Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-17T17:01:25.1256466Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-17T17:01:25.1267505Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-17T17:01:25.1275219Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-17T17:01:25.1280757Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-17T17:01:25.1286719Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-17T17:01:25.1289965Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-17T17:01:25.1295678Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-17T17:01:25.1301374Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-17T17:01:25.1309271Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-17T17:01:25.1334661Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-17T17:01:25.1343187Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-17T17:01:25.1348886Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-17T17:01:25.1352911Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-17T17:01:25.1375167Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-17T17:01:25.1379746Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-17T17:01:25.1384445Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-17T17:01:25.1389632Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-17T17:01:25.1398155Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-17T17:01:25.1402811Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-17T17:01:25.1410117Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-17T17:01:25.1417836Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-17T17:01:25.1423965Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-17T17:01:25.1430684Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-17T17:01:25.1435040Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-17T17:01:25.1440658Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-17T17:01:25.1445938Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-17T17:01:25.1453183Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-17T17:01:25.1458488Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-17T17:01:25.1463060Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-17T17:01:25.1469070Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-17T17:01:25.1476582Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-17T17:01:25.1484015Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-17T17:01:25.1489581Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-17T17:01:25.1494599Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-17T17:01:25.1560448Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-17T17:01:25.1578393Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-17T17:01:25.1583430Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-17T17:01:25.1589114Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-17T17:01:25.1594109Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-17T17:01:25.1600632Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-17T17:01:25.1606424Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-17T17:01:25.1618075Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-17T17:01:25.1634620Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-17T17:01:25.1639440Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-17T17:01:25.1646723Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-17T17:01:25.1652491Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-17T17:01:25.1656410Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-17T17:01:25.1662549Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-17T17:01:25.1668167Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-17T17:01:25.1672255Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-17T17:01:25.1678074Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-17T17:01:25.1682225Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-17T17:01:25.1688827Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-17T17:01:25.1693536Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-17T17:01:25.1698545Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-17T17:01:25.1703260Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-17T17:01:25.1707675Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-17T17:01:25.1713137Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-17T17:01:25.1718713Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-17T17:01:25.1790516Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-17T17:01:25.1794664Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-17T17:01:25.1799368Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-17T17:01:25.1845251Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-17T17:01:25.9118023Z Fetched 8648 kB in 0s (56.7 MB/s) 2021-05-17T17:01:25.9456183Z Selecting previously unselected package dctrl-tools. 2021-05-17T17:01:25.9629281Z (Reading database ... 2021-05-17T17:01:25.9629786Z (Reading database ... 5% 2021-05-17T17:01:25.9630236Z (Reading database ... 10% 2021-05-17T17:01:25.9630667Z (Reading database ... 15% 2021-05-17T17:01:25.9631078Z (Reading database ... 20% 2021-05-17T17:01:25.9631496Z (Reading database ... 25% 2021-05-17T17:01:25.9631907Z (Reading database ... 30% 2021-05-17T17:01:25.9632326Z (Reading database ... 35% 2021-05-17T17:01:25.9632746Z (Reading database ... 40% 2021-05-17T17:01:25.9633173Z (Reading database ... 45% 2021-05-17T17:01:25.9633590Z (Reading database ... 50% 2021-05-17T17:01:25.9867205Z (Reading database ... 55% 2021-05-17T17:01:26.0191673Z (Reading database ... 60% 2021-05-17T17:01:26.0494047Z (Reading database ... 65% 2021-05-17T17:01:26.0778520Z (Reading database ... 70% 2021-05-17T17:01:26.1382749Z (Reading database ... 75% 2021-05-17T17:01:26.2046627Z (Reading database ... 80% 2021-05-17T17:01:26.2811053Z (Reading database ... 85% 2021-05-17T17:01:26.3395259Z (Reading database ... 90% 2021-05-17T17:01:26.3900855Z (Reading database ... 95% 2021-05-17T17:01:26.3901737Z (Reading database ... 100% 2021-05-17T17:01:26.3902824Z (Reading database ... 254809 files and directories currently installed.) 2021-05-17T17:01:26.4033956Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-17T17:01:26.4182586Z Unpacking dctrl-tools (2.24-3) ... 2021-05-17T17:01:26.4503043Z Selecting previously unselected package libfile-which-perl. 2021-05-17T17:01:26.4712926Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-17T17:01:26.4747920Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-17T17:01:26.4967416Z Selecting previously unselected package libfile-homedir-perl. 2021-05-17T17:01:26.5235329Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb 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2021-05-17T17:01:26.7376854Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ... 2021-05-17T17:01:26.7384747Z Unpacking libb-hooks-op-check-perl (0.22-1build2) ... 2021-05-17T17:01:26.7607807Z Selecting previously unselected package libdynaloader-functions-perl. 2021-05-17T17:01:26.7875303Z Preparing to unpack .../007-libdynaloader-functions-perl_0.003-1_all.deb ... 2021-05-17T17:01:26.7884816Z Unpacking libdynaloader-functions-perl (0.003-1) ... 2021-05-17T17:01:26.8183118Z Selecting previously unselected package libdevel-callchecker-perl. 2021-05-17T17:01:26.8373427Z Preparing to unpack .../008-libdevel-callchecker-perl_0.008-1ubuntu1_amd64.deb ... 2021-05-17T17:01:26.8383412Z Unpacking libdevel-callchecker-perl (0.008-1ubuntu1) ... 2021-05-17T17:01:26.8702889Z Selecting previously unselected package libparams-classify-perl. 2021-05-17T17:01:26.8898390Z Preparing to unpack .../009-libparams-classify-perl_0.015-1build2_amd64.deb ... 2021-05-17T17:01:26.8909353Z Unpacking libparams-classify-perl (0.015-1build2) ... 2021-05-17T17:01:26.9143454Z Selecting previously unselected package libmodule-runtime-perl. 2021-05-17T17:01:26.9400085Z Preparing to unpack .../010-libmodule-runtime-perl_0.016-1_all.deb ... 2021-05-17T17:01:26.9408326Z Unpacking libmodule-runtime-perl (0.016-1) ... 2021-05-17T17:01:26.9620413Z Selecting previously unselected package libimport-into-perl. 2021-05-17T17:01:26.9889373Z Preparing to unpack .../011-libimport-into-perl_1.002005-1_all.deb ... 2021-05-17T17:01:26.9900271Z Unpacking libimport-into-perl (1.002005-1) ... 2021-05-17T17:01:27.0222791Z Selecting previously unselected package librole-tiny-perl. 2021-05-17T17:01:27.0429347Z Preparing to unpack .../012-librole-tiny-perl_2.001004-1_all.deb ... 2021-05-17T17:01:27.0454817Z Unpacking librole-tiny-perl (2.001004-1) ... 2021-05-17T17:01:27.0703995Z Selecting previously unselected package libstrictures-perl. 2021-05-17T17:01:27.0965758Z 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Done 2021-05-17T17:01:56.2903065Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-17T17:01:56.3019587Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-17T17:01:56.3277818Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-17T17:01:56.3278308Z env: 2021-05-17T17:01:56.3278738Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:01:56.3279197Z TIC_DEPLOY_KEY: 2021-05-17T17:01:56.3279966Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:01:56.3281742Z GITHUB_PAT: *** 2021-05-17T17:01:56.3282524Z COVERALLS_TOKEN: *** 2021-05-17T17:01:56.3282984Z continue-on-error: true 2021-05-17T17:01:56.3283451Z VDIFFR_RUN_TESTS: 2021-05-17T17:01:56.3283904Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:01:56.3284333Z TZ: UTC 2021-05-17T17:01:56.3284708Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:01:56.3285089Z NOT_CRAN: true 2021-05-17T17:01:56.3285456Z ##[endgroup] 2021-05-17T17:01:56.3784261Z [command]sudo apt-get install -y texinfo 2021-05-17T17:01:56.5513227Z Reading package lists... 2021-05-17T17:01:56.7324286Z Building dependency tree... 2021-05-17T17:01:56.7342544Z Reading state information... 2021-05-17T17:01:56.9555373Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-17T17:01:56.9564623Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:01:57.1806660Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-17T17:01:57.1947331Z --2021-05-17 17:01:57-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-17T17:01:57.2116286Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-17T17:01:57.2183574Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-17T17:01:57.2439181Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-17T17:01:57.2441772Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-17T17:01:57.2444248Z --2021-05-17 17:01:57-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-17T17:01:57.2843209Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-17T17:01:57.3435921Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-17T17:01:57.5522989Z HTTP request sent, awaiting response... 302 Found 2021-05-17T17:01:57.5526984Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=46SGmQ38pfOe6W%2FmK1Sc%2Bl%2BYyJG5StI%2FYn2a6gQ9N70%3D&st=2021-05-17T17%3A00%3A57Z&se=2021-05-17T17%3A06%3A57Z&sp=r [following] 2021-05-17T17:01:57.5532060Z --2021-05-17 17:01:57-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=46SGmQ38pfOe6W%2FmK1Sc%2Bl%2BYyJG5StI%2FYn2a6gQ9N70%3D&st=2021-05-17T17%3A00%3A57Z&se=2021-05-17T17%3A06%3A57Z&sp=r 2021-05-17T17:01:57.5875719Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-17T17:01:57.6465392Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-17T17:01:57.9001265Z HTTP request sent, awaiting response... 200 OK 2021-05-17T17:01:57.9002754Z Length: 67306919 (64M) [application/octet-stream] 2021-05-17T17:01:57.9004589Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-17T17:01:58.4295747Z 2021-05-17T17:01:59.8347696Z 0K ........ ........ ........ ........ 49% 17.2M 2s 2021-05-17T17:02:00.9262422Z 32768K ........ ........ ........ ........ 99% 28.9M 0s 2021-05-17T17:02:00.9265009Z 65536K 100% 3.01M=3.0s 2021-05-17T17:02:00.9265352Z 2021-05-17T17:02:00.9266915Z 2021-05-17 17:02:00 (21.2 MB/s) - ‘TinyTeX.tar.gz’ saved [67306919/67306919] 2021-05-17T17:02:00.9267372Z 2021-05-17T17:02:02.6225640Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-17T17:02:02.6226723Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-17T17:02:02.8965452Z ##[group]Run tlmgr update --self 2021-05-17T17:02:02.8966028Z tlmgr update --self 2021-05-17T17:02:02.8966929Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-17T17:02:02.8967778Z tlmgr update --all 2021-05-17T17:02:02.9014565Z shell: /usr/bin/bash -e {0} 2021-05-17T17:02:02.9014964Z env: 2021-05-17T17:02:02.9015387Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:02:02.9015848Z TIC_DEPLOY_KEY: 2021-05-17T17:02:02.9016640Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:02:02.9018421Z GITHUB_PAT: *** 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2021-05-17T17:02:12.7051097Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/ezAdY2GycD/wQbVSJCy9b. 2021-05-17T17:02:12.7052812Z OK: optex.fmt/luatex 2021-05-17T17:02:12.7053988Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-17T17:02:12.7055413Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-17T17:02:13.8659322Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-17T17:02:13.8661511Z tlmgr: no updates available 2021-05-17T17:02:13.9635668Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-17T17:02:13.9636171Z with: 2021-05-17T17:02:13.9636674Z pandoc-version: 2.7.3 2021-05-17T17:02:13.9637069Z env: 2021-05-17T17:02:13.9637473Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:02:13.9637932Z TIC_DEPLOY_KEY: 2021-05-17T17:02:13.9638716Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:02:13.9640543Z GITHUB_PAT: *** 2021-05-17T17:02:13.9641333Z COVERALLS_TOKEN: *** 2021-05-17T17:02:13.9641818Z continue-on-error: true 2021-05-17T17:02:13.9642272Z VDIFFR_RUN_TESTS: 2021-05-17T17:02:13.9642750Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:02:13.9643173Z TZ: UTC 2021-05-17T17:02:13.9643555Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:02:13.9643967Z NOT_CRAN: true 2021-05-17T17:02:13.9644321Z ##[endgroup] 2021-05-17T17:02:14.2889184Z [command]sudo apt-get install -y gdebi-core 2021-05-17T17:02:14.3562734Z Reading package lists... 2021-05-17T17:02:14.5417954Z Building dependency tree... 2021-05-17T17:02:14.5433812Z Reading state information... 2021-05-17T17:02:14.7778510Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-17T17:02:14.7780016Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:14.7814996Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-17T17:02:14.8948031Z 2021-05-17T17:02:14.9108043Z Reading package lists... 0% 2021-05-17T17:02:14.9109024Z 2021-05-17T17:02:14.9151757Z Reading package lists... 100% 2021-05-17T17:02:14.9152549Z 2021-05-17T17:02:14.9153020Z 2021-05-17T17:02:14.9153736Z Reading package lists... Done 2021-05-17T17:02:14.9154303Z 2021-05-17T17:02:14.9155013Z Building dependency tree... 0% 2021-05-17T17:02:14.9155591Z 2021-05-17T17:02:14.9466975Z Building dependency tree... 0% 2021-05-17T17:02:14.9467695Z 2021-05-17T17:02:14.9468576Z Building dependency tree... 50% 2021-05-17T17:02:14.9468973Z 2021-05-17T17:02:15.0964720Z Building dependency tree... 50% 2021-05-17T17:02:15.0965256Z 2021-05-17T17:02:15.0965777Z Building dependency tree 2021-05-17T17:02:15.0966185Z 2021-05-17T17:02:15.0966724Z Reading state information... 0% 2021-05-17T17:02:15.0967112Z 2021-05-17T17:02:15.2626309Z Reading state information... 0% 2021-05-17T17:02:15.2626891Z 2021-05-17T17:02:15.2627142Z 2021-05-17T17:02:15.2627701Z Reading state information... 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2021-05-17T17:02:15.4542895Z 2021-05-17T17:02:15.4543421Z Reading state information... 87% 2021-05-17T17:02:15.4582562Z 2021-05-17T17:02:15.4583359Z Reading state information... 89% 2021-05-17T17:02:15.4621553Z 2021-05-17T17:02:15.4622069Z Reading state information... 91% 2021-05-17T17:02:15.4662224Z 2021-05-17T17:02:15.4662730Z Reading state information... 93% 2021-05-17T17:02:15.4699949Z 2021-05-17T17:02:15.4700448Z Reading state information... 95% 2021-05-17T17:02:15.4741887Z 2021-05-17T17:02:15.4742415Z Reading state information... 97% 2021-05-17T17:02:15.4780882Z 2021-05-17T17:02:15.4781442Z Reading state information... 99% 2021-05-17T17:02:15.7578179Z Selecting previously unselected package pandoc. 2021-05-17T17:02:15.8892397Z (Reading database ... 261973 files and directories currently installed.) 2021-05-17T17:02:15.9023440Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-17T17:02:15.9033843Z Unpacking pandoc (2.7.3-1) ... 2021-05-17T17:02:17.9213063Z Setting up pandoc (2.7.3-1) ... 2021-05-17T17:02:17.9240478Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:18.7100215Z 2021-05-17T17:02:18.7101247Z 2021-05-17T17:02:18.7101908Z Reading state information... Done 2021-05-17T17:02:18.7455898Z ##[group]Run git config user.name adigherman 2021-05-17T17:02:18.7456562Z git config user.name adigherman 2021-05-17T17:02:18.7457143Z git config user.email adig@jhu.edu 2021-05-17T17:02:18.7498254Z shell: /usr/bin/bash -e {0} 2021-05-17T17:02:18.7498634Z env: 2021-05-17T17:02:18.7499090Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:02:18.7499552Z TIC_DEPLOY_KEY: 2021-05-17T17:02:18.7500353Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:02:18.7503680Z GITHUB_PAT: *** 2021-05-17T17:02:18.7504575Z COVERALLS_TOKEN: *** 2021-05-17T17:02:18.7505070Z continue-on-error: true 2021-05-17T17:02:18.7505544Z VDIFFR_RUN_TESTS: 2021-05-17T17:02:18.7506017Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:02:18.7506472Z TZ: UTC 2021-05-17T17:02:18.7506848Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:02:18.7507262Z NOT_CRAN: true 2021-05-17T17:02:18.7507649Z ##[endgroup] 2021-05-17T17:02:18.7807237Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-17T17:02:18.7807855Z env: 2021-05-17T17:02:18.7808293Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:02:18.7808750Z TIC_DEPLOY_KEY: 2021-05-17T17:02:18.7809534Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:02:18.7811234Z GITHUB_PAT: *** 2021-05-17T17:02:18.7812019Z COVERALLS_TOKEN: *** 2021-05-17T17:02:18.7812497Z continue-on-error: true 2021-05-17T17:02:18.7812950Z VDIFFR_RUN_TESTS: 2021-05-17T17:02:18.7813427Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:02:18.7813845Z TZ: UTC 2021-05-17T17:02:18.7814227Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:02:18.7814632Z NOT_CRAN: true 2021-05-17T17:02:18.7814983Z ##[endgroup] 2021-05-17T17:02:18.9655782Z Reading package lists... 2021-05-17T17:02:19.1454393Z Building dependency tree... 2021-05-17T17:02:19.1470009Z Reading state information... 2021-05-17T17:02:19.2884342Z The following additional packages will be installed: 2021-05-17T17:02:19.2886330Z cmake-data libjsoncpp1 librhash0 2021-05-17T17:02:19.2893180Z Suggested packages: 2021-05-17T17:02:19.2894041Z cmake-doc ninja-build 2021-05-17T17:02:19.3368411Z The following NEW packages will be installed: 2021-05-17T17:02:19.3379253Z cmake cmake-data libjsoncpp1 librhash0 2021-05-17T17:02:19.3638539Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:19.3639573Z Need to get 5470 kB of archives. 2021-05-17T17:02:19.3640700Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-17T17:02:19.3643127Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-17T17:02:19.3898511Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-17T17:02:19.3913300Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-17T17:02:19.3937703Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-17T17:02:19.8512859Z Fetched 5470 kB in 0s (48.5 MB/s) 2021-05-17T17:02:19.8869930Z Selecting previously unselected package cmake-data. 2021-05-17T17:02:19.8942437Z (Reading database ... 2021-05-17T17:02:19.8943247Z (Reading database ... 5% 2021-05-17T17:02:19.8943924Z (Reading database ... 10% 2021-05-17T17:02:19.8944572Z (Reading database ... 15% 2021-05-17T17:02:19.8945278Z (Reading database ... 20% 2021-05-17T17:02:19.8945929Z (Reading database ... 25% 2021-05-17T17:02:19.8946584Z (Reading database ... 30% 2021-05-17T17:02:19.8947229Z (Reading database ... 35% 2021-05-17T17:02:19.8947870Z (Reading database ... 40% 2021-05-17T17:02:19.8948499Z (Reading database ... 45% 2021-05-17T17:02:19.8949709Z (Reading database ... 50% 2021-05-17T17:02:19.8982308Z (Reading database ... 55% 2021-05-17T17:02:19.9021624Z (Reading database ... 60% 2021-05-17T17:02:19.9062021Z (Reading database ... 65% 2021-05-17T17:02:19.9197686Z (Reading database ... 70% 2021-05-17T17:02:19.9318057Z (Reading database ... 75% 2021-05-17T17:02:19.9618721Z (Reading database ... 80% 2021-05-17T17:02:19.9951318Z (Reading database ... 85% 2021-05-17T17:02:20.0107696Z (Reading database ... 90% 2021-05-17T17:02:20.0195433Z (Reading database ... 95% 2021-05-17T17:02:20.0196060Z (Reading database ... 100% 2021-05-17T17:02:20.0196924Z (Reading database ... 261980 files and directories currently installed.) 2021-05-17T17:02:20.0325924Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ... 2021-05-17T17:02:20.0531905Z Unpacking cmake-data (3.16.3-1ubuntu1) ... 2021-05-17T17:02:20.5553248Z Selecting previously unselected package libjsoncpp1:amd64. 2021-05-17T17:02:20.5863281Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ... 2021-05-17T17:02:20.5881476Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-17T17:02:20.6173486Z Selecting previously unselected package librhash0:amd64. 2021-05-17T17:02:20.6465181Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-17T17:02:20.6474603Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-17T17:02:20.6822696Z Selecting previously unselected package cmake. 2021-05-17T17:02:20.7077955Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-17T17:02:20.7084503Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-17T17:02:21.1090868Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-17T17:02:21.1116047Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-17T17:02:21.1492351Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-17T17:02:21.1511081Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-17T17:02:21.1540037Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:22.2847855Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:24.4330651Z Reading package lists... 2021-05-17T17:02:24.6176861Z Building dependency tree... 2021-05-17T17:02:24.6194768Z Reading state information... 2021-05-17T17:02:24.7800567Z Suggested packages: 2021-05-17T17:02:24.7801770Z libssh-doc 2021-05-17T17:02:24.8275198Z The following NEW packages will be installed: 2021-05-17T17:02:24.8282417Z libssh-dev 2021-05-17T17:02:24.8877141Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:24.8878013Z Need to get 219 kB of archives. 2021-05-17T17:02:24.8878832Z After this operation, 1127 kB of additional disk space will be used. 2021-05-17T17:02:24.8880924Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-17T17:02:25.3014919Z Fetched 219 kB in 0s (3287 kB/s) 2021-05-17T17:02:25.3291428Z Selecting previously unselected package libssh-dev:amd64. 2021-05-17T17:02:25.3362848Z (Reading database ... 2021-05-17T17:02:25.3363579Z (Reading database ... 5% 2021-05-17T17:02:25.3364297Z (Reading database ... 10% 2021-05-17T17:02:25.3364944Z (Reading database ... 15% 2021-05-17T17:02:25.3365590Z (Reading database ... 20% 2021-05-17T17:02:25.3366235Z (Reading database ... 25% 2021-05-17T17:02:25.3366893Z (Reading database ... 30% 2021-05-17T17:02:25.3367534Z (Reading database ... 35% 2021-05-17T17:02:25.3368182Z (Reading database ... 40% 2021-05-17T17:02:25.3368806Z (Reading database ... 45% 2021-05-17T17:02:25.3369443Z (Reading database ... 50% 2021-05-17T17:02:25.3402902Z (Reading database ... 55% 2021-05-17T17:02:25.3443361Z (Reading database ... 60% 2021-05-17T17:02:25.3489719Z (Reading database ... 65% 2021-05-17T17:02:25.3630118Z (Reading database ... 70% 2021-05-17T17:02:25.3764235Z (Reading database ... 75% 2021-05-17T17:02:25.4070919Z (Reading database ... 80% 2021-05-17T17:02:25.4426447Z (Reading database ... 85% 2021-05-17T17:02:25.4590250Z (Reading database ... 90% 2021-05-17T17:02:25.4677937Z (Reading database ... 95% 2021-05-17T17:02:25.4678549Z (Reading database ... 100% 2021-05-17T17:02:25.4679407Z (Reading database ... 264764 files and directories currently installed.) 2021-05-17T17:02:25.4811642Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-17T17:02:25.4819057Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T17:02:25.5564935Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T17:02:27.6053843Z Reading package lists... 2021-05-17T17:02:27.7850426Z Building dependency tree... 2021-05-17T17:02:27.7870594Z Reading state information... 2021-05-17T17:02:28.0032761Z The following NEW packages will be installed: 2021-05-17T17:02:28.0043264Z jags 2021-05-17T17:02:28.0519379Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:28.0520505Z Need to get 1562 kB of archives. 2021-05-17T17:02:28.0521386Z After this operation, 3615 kB of additional disk space will be used. 2021-05-17T17:02:28.0523370Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-17T17:02:28.5272949Z Fetched 1562 kB in 0s (12.8 MB/s) 2021-05-17T17:02:28.5567533Z Selecting previously unselected package jags. 2021-05-17T17:02:28.5642813Z (Reading database ... 2021-05-17T17:02:28.5643633Z (Reading database ... 5% 2021-05-17T17:02:28.5644127Z (Reading database ... 10% 2021-05-17T17:02:28.5644595Z (Reading database ... 15% 2021-05-17T17:02:28.5645070Z (Reading database ... 20% 2021-05-17T17:02:28.5645548Z (Reading database ... 25% 2021-05-17T17:02:28.5646009Z (Reading database ... 30% 2021-05-17T17:02:28.5646481Z (Reading database ... 35% 2021-05-17T17:02:28.5646940Z (Reading database ... 40% 2021-05-17T17:02:28.5647409Z (Reading database ... 45% 2021-05-17T17:02:28.5647889Z (Reading database ... 50% 2021-05-17T17:02:28.5680370Z (Reading database ... 55% 2021-05-17T17:02:28.5720485Z (Reading database ... 60% 2021-05-17T17:02:28.5765690Z (Reading database ... 65% 2021-05-17T17:02:28.5900695Z (Reading database ... 70% 2021-05-17T17:02:28.6029121Z (Reading database ... 75% 2021-05-17T17:02:28.6318490Z (Reading database ... 80% 2021-05-17T17:02:28.6656583Z (Reading database ... 85% 2021-05-17T17:02:28.6810706Z (Reading database ... 90% 2021-05-17T17:02:28.6892756Z (Reading database ... 95% 2021-05-17T17:02:28.6893870Z (Reading database ... 100% 2021-05-17T17:02:28.6894957Z (Reading database ... 264783 files and directories currently installed.) 2021-05-17T17:02:28.7023937Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-17T17:02:28.7036755Z Unpacking jags (4.3.0-3build1) ... 2021-05-17T17:02:28.8519449Z Setting up jags (4.3.0-3build1) ... 2021-05-17T17:02:28.8621564Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:29.6216529Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:31.7172367Z Reading package lists... 2021-05-17T17:02:31.9025112Z Building dependency tree... 2021-05-17T17:02:31.9043816Z Reading state information... 2021-05-17T17:02:32.0794334Z The following additional packages will be installed: 2021-05-17T17:02:32.0798518Z libnode64 libuv1-dev 2021-05-17T17:02:32.1283260Z The following NEW packages will be installed: 2021-05-17T17:02:32.1289939Z libnode-dev libnode64 libuv1-dev 2021-05-17T17:02:32.1480265Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:32.1481333Z Need to get 6239 kB of archives. 2021-05-17T17:02:32.1482517Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-17T17:02:32.1484913Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-17T17:02:32.1525267Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-17T17:02:32.3039087Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-17T17:02:32.7092797Z Fetched 6239 kB in 0s (35.0 MB/s) 2021-05-17T17:02:32.7423077Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-17T17:02:32.7449924Z (Reading database ... 2021-05-17T17:02:32.7450784Z (Reading database ... 5% 2021-05-17T17:02:32.7451416Z (Reading database ... 10% 2021-05-17T17:02:32.7452006Z (Reading database ... 15% 2021-05-17T17:02:32.7452644Z (Reading database ... 20% 2021-05-17T17:02:32.7453244Z (Reading database ... 25% 2021-05-17T17:02:32.7453832Z (Reading database ... 30% 2021-05-17T17:02:32.7454415Z (Reading database ... 35% 2021-05-17T17:02:32.7454987Z (Reading database ... 40% 2021-05-17T17:02:32.7455561Z (Reading database ... 45% 2021-05-17T17:02:32.7456147Z (Reading database ... 50% 2021-05-17T17:02:32.7488702Z (Reading database ... 55% 2021-05-17T17:02:32.7526719Z (Reading database ... 60% 2021-05-17T17:02:32.7567547Z (Reading database ... 65% 2021-05-17T17:02:32.7703552Z (Reading database ... 70% 2021-05-17T17:02:32.7830386Z (Reading database ... 75% 2021-05-17T17:02:32.8128037Z (Reading database ... 80% 2021-05-17T17:02:32.8469306Z (Reading database ... 85% 2021-05-17T17:02:32.8626739Z (Reading database ... 90% 2021-05-17T17:02:32.8708023Z (Reading database ... 95% 2021-05-17T17:02:32.8708627Z (Reading database ... 100% 2021-05-17T17:02:32.8709467Z (Reading database ... 264923 files and directories currently installed.) 2021-05-17T17:02:32.8836622Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-17T17:02:32.8849097Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T17:02:32.9223053Z Selecting previously unselected package libnode64:amd64. 2021-05-17T17:02:32.9456481Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T17:02:32.9480981Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:02:33.5371008Z Selecting previously unselected package libnode-dev:amd64. 2021-05-17T17:02:33.5579210Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T17:02:33.5588331Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:02:33.6464432Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T17:02:33.6495658Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:02:33.6520640Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:02:33.6543018Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:35.7500448Z Reading package lists... 2021-05-17T17:02:35.9323958Z Building dependency tree... 2021-05-17T17:02:35.9342356Z Reading state information... 2021-05-17T17:02:36.0959995Z The following additional packages will be installed: 2021-05-17T17:02:36.0964033Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T17:02:36.0968089Z Suggested packages: 2021-05-17T17:02:36.0969057Z libfftw3-doc 2021-05-17T17:02:36.1439162Z The following NEW packages will be installed: 2021-05-17T17:02:36.1451825Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T17:02:36.1670424Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:36.1671193Z Need to get 3986 kB of archives. 2021-05-17T17:02:36.1671908Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-17T17:02:36.1673741Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-17T17:02:36.1955887Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-17T17:02:36.2413388Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-17T17:02:36.2804620Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-17T17:02:36.2913299Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-17T17:02:36.7700414Z Fetched 3986 kB in 0s (17.8 MB/s) 2021-05-17T17:02:36.8016746Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-17T17:02:36.8093222Z (Reading database ... 2021-05-17T17:02:36.8093821Z (Reading database ... 5% 2021-05-17T17:02:36.8094302Z (Reading database ... 10% 2021-05-17T17:02:36.8094784Z (Reading database ... 15% 2021-05-17T17:02:36.8095264Z (Reading database ... 20% 2021-05-17T17:02:36.8095728Z (Reading database ... 25% 2021-05-17T17:02:36.8096224Z (Reading database ... 30% 2021-05-17T17:02:36.8096690Z (Reading database ... 35% 2021-05-17T17:02:36.8097161Z (Reading database ... 40% 2021-05-17T17:02:36.8097632Z (Reading database ... 45% 2021-05-17T17:02:36.8098092Z (Reading database ... 50% 2021-05-17T17:02:36.8123150Z (Reading database ... 55% 2021-05-17T17:02:36.8165478Z (Reading database ... 60% 2021-05-17T17:02:36.8209153Z (Reading database ... 65% 2021-05-17T17:02:36.8349278Z (Reading database ... 70% 2021-05-17T17:02:36.8485227Z (Reading database ... 75% 2021-05-17T17:02:36.8794614Z (Reading database ... 80% 2021-05-17T17:02:36.9150444Z (Reading database ... 85% 2021-05-17T17:02:36.9315617Z (Reading database ... 90% 2021-05-17T17:02:36.9404531Z (Reading database ... 95% 2021-05-17T17:02:36.9405210Z (Reading database ... 100% 2021-05-17T17:02:36.9406063Z (Reading database ... 265059 files and directories currently installed.) 2021-05-17T17:02:36.9537049Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:02:36.9556460Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.0131656Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-17T17:02:37.0352470Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:02:37.0363216Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.1263301Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-17T17:02:37.1486078Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:02:37.1500293Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.2423288Z Selecting previously unselected package libfftw3-bin. 2021-05-17T17:02:37.2645072Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:02:37.2657107Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.2960992Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-17T17:02:37.3205311Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:02:37.3213640Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.5916561Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.5943363Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.5965614Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.5983931Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.6006820Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:02:37.6032045Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:38.4068490Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:40.5423715Z Reading package lists... 2021-05-17T17:02:40.7310695Z Building dependency tree... 2021-05-17T17:02:40.7328669Z Reading state information... 2021-05-17T17:02:40.8984273Z The following additional packages will be installed: 2021-05-17T17:02:40.8988296Z libdcmtk14 2021-05-17T17:02:40.9455802Z The following NEW packages will be installed: 2021-05-17T17:02:40.9464305Z dcmtk libdcmtk14 2021-05-17T17:02:40.9902284Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:40.9903140Z Need to get 5546 kB of archives. 2021-05-17T17:02:40.9903960Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-17T17:02:40.9906052Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-17T17:02:41.1712883Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-17T17:02:41.6000864Z Fetched 5546 kB in 0s (22.2 MB/s) 2021-05-17T17:02:41.6284739Z Selecting previously unselected package libdcmtk14. 2021-05-17T17:02:41.6359091Z (Reading database ... 2021-05-17T17:02:41.6359742Z (Reading database ... 5% 2021-05-17T17:02:41.6360330Z (Reading database ... 10% 2021-05-17T17:02:41.6360905Z (Reading database ... 15% 2021-05-17T17:02:41.6361462Z (Reading database ... 20% 2021-05-17T17:02:41.6362056Z (Reading database ... 25% 2021-05-17T17:02:41.6362623Z (Reading database ... 30% 2021-05-17T17:02:41.6363166Z (Reading database ... 35% 2021-05-17T17:02:41.6363730Z (Reading database ... 40% 2021-05-17T17:02:41.6364295Z (Reading database ... 45% 2021-05-17T17:02:41.6364846Z (Reading database ... 50% 2021-05-17T17:02:41.6392690Z (Reading database ... 55% 2021-05-17T17:02:41.6430609Z (Reading database ... 60% 2021-05-17T17:02:41.6473033Z (Reading database ... 65% 2021-05-17T17:02:41.6607483Z (Reading database ... 70% 2021-05-17T17:02:41.6731837Z (Reading database ... 75% 2021-05-17T17:02:41.7029379Z (Reading database ... 80% 2021-05-17T17:02:41.7386745Z (Reading database ... 85% 2021-05-17T17:02:41.7550058Z (Reading database ... 90% 2021-05-17T17:02:41.7639193Z (Reading database ... 95% 2021-05-17T17:02:41.7639879Z (Reading database ... 100% 2021-05-17T17:02:41.7640722Z (Reading database ... 265150 files and directories currently installed.) 2021-05-17T17:02:41.7773192Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-17T17:02:41.7792500Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T17:02:42.2542819Z Selecting previously unselected package dcmtk. 2021-05-17T17:02:42.2770470Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-17T17:02:42.2833321Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-17T17:02:42.4163734Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T17:02:42.4190018Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-17T17:02:42.4296975Z Adding `dcmtk' group to system ... 2021-05-17T17:02:42.4750916Z Adding `dcmtk' user to system ... 2021-05-17T17:02:42.5370690Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-17T17:02:42.7828430Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:44.3796345Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:46.5088040Z Reading package lists... 2021-05-17T17:02:46.6957578Z Building dependency tree... 2021-05-17T17:02:46.6974868Z Reading state information... 2021-05-17T17:02:46.9379646Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-17T17:02:46.9380976Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:47.0011706Z Reading package lists... 2021-05-17T17:02:47.1880873Z Building dependency tree... 2021-05-17T17:02:47.1898833Z Reading state information... 2021-05-17T17:02:47.4584322Z libpng-dev is already the newest version (1.6.37-2). 2021-05-17T17:02:47.4585259Z libpng-dev set to manually installed. 2021-05-17T17:02:47.4586044Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:47.5201145Z Reading package lists... 2021-05-17T17:02:47.7084261Z Building dependency tree... 2021-05-17T17:02:47.7102262Z Reading state information... 2021-05-17T17:02:47.8749459Z The following additional packages will be installed: 2021-05-17T17:02:47.8753191Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-17T17:02:47.8759223Z Suggested packages: 2021-05-17T17:02:47.8760570Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-17T17:02:47.8762095Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-17T17:02:47.8763249Z fonts-arphic-uming fonts-nanum 2021-05-17T17:02:47.9239563Z The following NEW packages will be installed: 2021-05-17T17:02:47.9241267Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-17T17:02:47.9251460Z libpoppler97 poppler-data 2021-05-17T17:02:47.9444405Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:47.9445468Z Need to get 2582 kB of archives. 2021-05-17T17:02:47.9446304Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-17T17:02:47.9448422Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-17T17:02:47.9757279Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-17T17:02:47.9790066Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-17T17:02:48.0036977Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-17T17:02:48.0424491Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-17T17:02:48.0462004Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-17T17:02:48.4506909Z Fetched 2582 kB in 0s (22.2 MB/s) 2021-05-17T17:02:48.4800147Z Selecting previously unselected package poppler-data. 2021-05-17T17:02:48.4883805Z (Reading database ... 2021-05-17T17:02:48.4884638Z (Reading database ... 5% 2021-05-17T17:02:48.4885541Z (Reading database ... 10% 2021-05-17T17:02:48.4886051Z (Reading database ... 15% 2021-05-17T17:02:48.4886534Z (Reading database ... 20% 2021-05-17T17:02:48.4887316Z (Reading database ... 25% 2021-05-17T17:02:48.4887791Z (Reading database ... 30% 2021-05-17T17:02:48.4888270Z (Reading database ... 35% 2021-05-17T17:02:48.4888734Z (Reading database ... 40% 2021-05-17T17:02:48.4889211Z (Reading database ... 45% 2021-05-17T17:02:48.4889693Z (Reading database ... 50% 2021-05-17T17:02:48.4931547Z (Reading database ... 55% 2021-05-17T17:02:48.4971615Z (Reading database ... 60% 2021-05-17T17:02:48.5013020Z (Reading database ... 65% 2021-05-17T17:02:48.5154137Z (Reading database ... 70% 2021-05-17T17:02:48.5288264Z (Reading database ... 75% 2021-05-17T17:02:48.5596532Z (Reading database ... 80% 2021-05-17T17:02:48.5969057Z (Reading database ... 85% 2021-05-17T17:02:48.6138532Z (Reading database ... 90% 2021-05-17T17:02:48.6228209Z (Reading database ... 95% 2021-05-17T17:02:48.6228831Z (Reading database ... 100% 2021-05-17T17:02:48.6229691Z (Reading database ... 265385 files and directories currently installed.) 2021-05-17T17:02:48.6367253Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-17T17:02:48.6379678Z Unpacking poppler-data (0.4.9-2) ... 2021-05-17T17:02:48.8582673Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-17T17:02:48.8842546Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-17T17:02:48.8856916Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T17:02:48.9262962Z Selecting previously unselected package libpoppler97:amd64. 2021-05-17T17:02:48.9494852Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:02:48.9510084Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.0583386Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-17T17:02:49.0879688Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:02:49.0889536Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.1183093Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-17T17:02:49.1427915Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:02:49.1436917Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.1658971Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-17T17:02:49.1951134Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:02:49.1960880Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.2521913Z Setting up poppler-data (0.4.9-2) ... 2021-05-17T17:02:49.2596109Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T17:02:49.2616336Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.2634321Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.2653295Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.2671588Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:02:49.2700962Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T17:02:49.3002513Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:51.4038546Z Reading package lists... 2021-05-17T17:02:51.5852936Z Building dependency tree... 2021-05-17T17:02:51.5870589Z Reading state information... 2021-05-17T17:02:51.7597771Z The following additional packages will be installed: 2021-05-17T17:02:51.7603514Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-17T17:02:51.7608988Z Suggested packages: 2021-05-17T17:02:51.7609702Z libhdf5-doc 2021-05-17T17:02:51.8080716Z The following NEW packages will be installed: 2021-05-17T17:02:51.8088845Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-17T17:02:51.8094878Z libsz2 2021-05-17T17:02:51.8307142Z 0 upgraded, 7 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:51.8307917Z Need to get 4074 kB of archives. 2021-05-17T17:02:51.8308629Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-17T17:02:51.8310826Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-17T17:02:51.8330157Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-17T17:02:51.8336069Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-17T17:02:51.8341320Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-17T17:02:51.8484063Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-17T17:02:51.8496779Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-17T17:02:51.8502818Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-17T17:02:52.2724777Z Fetched 4074 kB in 0s (73.9 MB/s) 2021-05-17T17:02:52.2999396Z Selecting previously unselected package hdf5-helpers. 2021-05-17T17:02:52.3073276Z (Reading database ... 2021-05-17T17:02:52.3074182Z (Reading database ... 5% 2021-05-17T17:02:52.3074888Z (Reading database ... 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2021-05-17T17:02:52.4351699Z (Reading database ... 265945 files and directories currently installed.) 2021-05-17T17:02:52.4483773Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:02:52.4497380Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:52.4742116Z Selecting previously unselected package libaec0:amd64. 2021-05-17T17:02:52.5018140Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-17T17:02:52.5032645Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-17T17:02:52.5342119Z Selecting previously unselected package libsz2:amd64. 2021-05-17T17:02:52.5576621Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-17T17:02:52.5585010Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-17T17:02:52.5902752Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-17T17:02:52.6134599Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:02:52.6144916Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:52.7562503Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-17T17:02:52.7858482Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:02:52.7867020Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:52.8194618Z Selecting previously unselected package libaec-dev:amd64. 2021-05-17T17:02:52.8482114Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-17T17:02:52.8490937Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T17:02:52.8742480Z Selecting previously unselected package libhdf5-dev. 2021-05-17T17:02:52.9015421Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:02:52.9028054Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:53.2007927Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:53.2036133Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-17T17:02:53.2057469Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-17T17:02:53.2081620Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T17:02:53.2100578Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:53.2121294Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:53.2140425Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:02:53.2213928Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-17T17:02:53.2239328Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:53.9865542Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:02:56.0760148Z Reading package lists... 2021-05-17T17:02:56.2574120Z Building dependency tree... 2021-05-17T17:02:56.2592685Z Reading state information... 2021-05-17T17:02:56.4276187Z The following additional packages will be installed: 2021-05-17T17:02:56.4280973Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-17T17:02:56.4766114Z The following NEW packages will be installed: 2021-05-17T17:02:56.4774316Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-17T17:02:56.4779718Z mesa-common-dev 2021-05-17T17:02:56.5029961Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:02:56.5030749Z Need to get 1761 kB of archives. 2021-05-17T17:02:56.5031501Z After this operation, 5442 kB of additional disk space will be used. 2021-05-17T17:02:56.5033360Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-17T17:02:56.5185676Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-17T17:02:56.5191042Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-17T17:02:56.5207397Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-17T17:02:56.5235442Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-17T17:02:56.5312006Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-17T17:02:56.9621695Z Fetched 1761 kB in 0s (21.2 MB/s) 2021-05-17T17:02:56.9919330Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-17T17:02:56.9993407Z (Reading database ... 2021-05-17T17:02:56.9994316Z (Reading database ... 5% 2021-05-17T17:02:56.9994989Z (Reading database ... 10% 2021-05-17T17:02:56.9995795Z (Reading database ... 15% 2021-05-17T17:02:56.9996498Z (Reading database ... 20% 2021-05-17T17:02:56.9997301Z (Reading database ... 25% 2021-05-17T17:02:56.9998166Z (Reading database ... 30% 2021-05-17T17:02:56.9998925Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T17:02:57.1793178Z Selecting previously unselected package libglx-dev:amd64. 2021-05-17T17:02:57.2080945Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:02:57.2092760Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:02:57.2336405Z Selecting previously unselected package libgl-dev:amd64. 2021-05-17T17:02:57.2627035Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:02:57.2640277Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:02:57.2983532Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-17T17:02:57.3279639Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-17T17:02:57.3294398Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T17:02:57.3670526Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-17T17:02:57.3962662Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-17T17:02:57.3973894Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T17:02:57.4396902Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-17T17:02:57.4687177Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:02:57.4698082Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:02:57.6237097Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T17:02:57.6259657Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:02:57.6279924Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T17:02:57.6302623Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:02:57.6320717Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T17:02:57.6340055Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:02:57.6368350Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:02:59.0318217Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:01.1048844Z Reading package lists... 2021-05-17T17:03:01.2897161Z Building dependency tree... 2021-05-17T17:03:01.2915261Z Reading state information... 2021-05-17T17:03:01.4573086Z The following additional packages will be installed: 2021-05-17T17:03:01.4576048Z libprotobuf-lite17 libprotoc17 2021-05-17T17:03:01.5042191Z The following NEW packages will be installed: 2021-05-17T17:03:01.5048998Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-17T17:03:01.5053387Z protobuf-compiler 2021-05-17T17:03:01.5240513Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:01.5241327Z Need to get 2754 kB of archives. 2021-05-17T17:03:01.5242061Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-17T17:03:01.5243929Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-17T17:03:01.5270822Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-17T17:03:01.5388363Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-17T17:03:01.5636290Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-17T17:03:01.6429413Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-17T17:03:02.8226611Z Fetched 2754 kB in 0s (20.7 MB/s) 2021-05-17T17:03:02.8237260Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-17T17:03:02.8238564Z (Reading database ... 2021-05-17T17:03:02.8239256Z (Reading database ... 5% 2021-05-17T17:03:02.8239937Z (Reading database ... 10% 2021-05-17T17:03:02.8240603Z (Reading database ... 15% 2021-05-17T17:03:02.8241281Z (Reading 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2021-05-17T17:03:02.8254606Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:03:02.8255985Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8257127Z Selecting previously unselected package libprotoc17:amd64. 2021-05-17T17:03:02.8258483Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:03:02.8259666Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8261816Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-17T17:03:02.8263144Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:03:02.8264264Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8265396Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-17T17:03:02.8266601Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:03:02.8267664Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8268791Z Selecting previously unselected package protobuf-compiler. 2021-05-17T17:03:02.8270167Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:03:02.8271134Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8271997Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8272854Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8273786Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8274712Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8277908Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:03:02.8278717Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:03:03.4992870Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:05.5863292Z Reading package lists... 2021-05-17T17:03:05.7759012Z Building dependency tree... 2021-05-17T17:03:05.7777016Z Reading state information... 2021-05-17T17:03:05.9501995Z The following additional packages will be installed: 2021-05-17T17:03:05.9503876Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-17T17:03:05.9505315Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-17T17:03:05.9506463Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-17T17:03:05.9507881Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-17T17:03:05.9509305Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-17T17:03:05.9510593Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T17:03:05.9512392Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T17:03:05.9513790Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T17:03:05.9515150Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T17:03:05.9516512Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T17:03:05.9518087Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T17:03:05.9519417Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T17:03:05.9520692Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T17:03:05.9524806Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T17:03:05.9525609Z Suggested packages: 2021-05-17T17:03:05.9526745Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-17T17:03:05.9528174Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-17T17:03:05.9529703Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-17T17:03:05.9531724Z nvidia-legacy-304xx-vdpau-driver 2021-05-17T17:03:06.0233823Z The following NEW packages will be installed: 2021-05-17T17:03:06.0236241Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-17T17:03:06.0237949Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-17T17:03:06.0239465Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-17T17:03:06.0241123Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-17T17:03:06.0242802Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-17T17:03:06.0244505Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T17:03:06.0246206Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T17:03:06.0247917Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T17:03:06.0249514Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T17:03:06.0251115Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T17:03:06.0252795Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T17:03:06.0254322Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T17:03:06.0257994Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T17:03:06.0259254Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T17:03:06.0451597Z 0 upgraded, 76 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:06.0452762Z Need to get 47.1 MB of archives. 2021-05-17T17:03:06.0453734Z After this operation, 195 MB of additional disk space will be used. 2021-05-17T17:03:06.0455893Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-17T17:03:06.0726049Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-17T17:03:06.0735804Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-17T17:03:06.0744031Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-17T17:03:06.0751680Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-17T17:03:06.0758910Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-17T17:03:06.0767828Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-17T17:03:06.0798243Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-17T17:03:06.2145974Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-17T17:03:06.2151809Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-17T17:03:06.2165642Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-17T17:03:06.2215065Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-17T17:03:06.2228316Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-17T17:03:06.2237351Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-17T17:03:06.2261426Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-17T17:03:06.2274009Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-17T17:03:06.2289045Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-17T17:03:06.2318286Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-17T17:03:06.2331932Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-17T17:03:06.2349102Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-17T17:03:06.2371264Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-17T17:03:06.2451830Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-17T17:03:06.2644503Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-17T17:03:06.2684667Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-17T17:03:06.2709899Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-17T17:03:06.2747717Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-17T17:03:06.3705748Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-17T17:03:06.3711953Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-17T17:03:06.3720342Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-17T17:03:06.3739571Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-17T17:03:06.3812106Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-17T17:03:06.3824309Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-17T17:03:06.3847263Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-17T17:03:06.3869973Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-17T17:03:06.3971731Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-17T17:03:06.4014643Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-17T17:03:06.4243290Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-17T17:03:06.4247919Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-17T17:03:06.6467605Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-17T17:03:06.6475061Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-17T17:03:06.6535703Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-17T17:03:06.6541953Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-17T17:03:06.6548974Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-17T17:03:06.6559779Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-17T17:03:06.6572557Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-17T17:03:06.6756002Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-17T17:03:06.6768804Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-17T17:03:06.6796814Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-17T17:03:06.6803761Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-17T17:03:06.6997982Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-17T17:03:06.7034283Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-17T17:03:06.7044652Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-17T17:03:06.7050621Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-17T17:03:06.7057408Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-17T17:03:06.7071924Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-17T17:03:06.7082095Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-17T17:03:06.7122348Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-17T17:03:06.7167007Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-17T17:03:06.7169092Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-17T17:03:06.7227337Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-17T17:03:06.7236405Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-17T17:03:06.7253755Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-17T17:03:06.7285559Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-17T17:03:06.7326482Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-17T17:03:06.7394806Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-17T17:03:06.7411789Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-17T17:03:06.7426276Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-17T17:03:06.7664113Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-17T17:03:06.7681350Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-17T17:03:06.7932423Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-17T17:03:06.7944605Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-17T17:03:06.7954454Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-17T17:03:06.8392186Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-17T17:03:06.8857490Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-17T17:03:06.9102710Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-17T17:03:06.9104565Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-17T17:03:07.4663418Z Fetched 47.1 MB in 1s (54.1 MB/s) 2021-05-17T17:03:07.4984551Z Selecting previously unselected package libaom0:amd64. 2021-05-17T17:03:07.5062068Z (Reading database ... 2021-05-17T17:03:07.5062790Z (Reading database ... 5% 2021-05-17T17:03:07.5063375Z (Reading database ... 10% 2021-05-17T17:03:07.5063955Z (Reading database ... 15% 2021-05-17T17:03:07.5064626Z (Reading database ... 20% 2021-05-17T17:03:07.5065197Z (Reading database ... 25% 2021-05-17T17:03:07.5065747Z (Reading database ... 30% 2021-05-17T17:03:07.5066305Z (Reading database ... 35% 2021-05-17T17:03:07.5066865Z (Reading database ... 40% 2021-05-17T17:03:07.5067413Z (Reading database ... 45% 2021-05-17T17:03:07.5068507Z (Reading database ... 50% 2021-05-17T17:03:07.5098941Z (Reading database ... 55% 2021-05-17T17:03:07.5138610Z (Reading database ... 60% 2021-05-17T17:03:07.5179971Z (Reading database ... 65% 2021-05-17T17:03:07.5320535Z (Reading database ... 70% 2021-05-17T17:03:07.5446649Z (Reading database ... 75% 2021-05-17T17:03:07.5738539Z (Reading database ... 80% 2021-05-17T17:03:07.6095260Z (Reading database ... 85% 2021-05-17T17:03:07.6255668Z (Reading database ... 90% 2021-05-17T17:03:07.6342933Z (Reading database ... 95% 2021-05-17T17:03:07.6343572Z (Reading database ... 100% 2021-05-17T17:03:07.6344398Z (Reading database ... 266807 files and directories currently installed.) 2021-05-17T17:03:07.6476387Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-17T17:03:07.6496778Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-17T17:03:07.7740228Z Selecting previously unselected package libva2:amd64. 2021-05-17T17:03:07.8024512Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-17T17:03:07.8039066Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-17T17:03:07.8301474Z Selecting previously unselected package libva-drm2:amd64. 2021-05-17T17:03:07.8589623Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-17T17:03:07.8599032Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-17T17:03:07.8827724Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-17T17:03:07.9115682Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-17T17:03:07.9128283Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T17:03:07.9422388Z Selecting previously unselected package libvdpau1:amd64. 2021-05-17T17:03:07.9655458Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-17T17:03:07.9664586Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T17:03:08.0023208Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-17T17:03:08.0299358Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-17T17:03:08.0306905Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T17:03:08.0622215Z Selecting previously unselected package libavutil56:amd64. 2021-05-17T17:03:08.0842291Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T17:03:08.0854155Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:08.1383629Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-17T17:03:08.1586111Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-17T17:03:08.1597974Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-17T17:03:08.8222231Z Selecting previously unselected package libgsm1:amd64. 2021-05-17T17:03:08.8457988Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-17T17:03:08.8467320Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-17T17:03:08.8782575Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-17T17:03:08.8989706Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-17T17:03:08.9003979Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-17T17:03:08.9383213Z Selecting previously unselected package libopus0:amd64. 2021-05-17T17:03:08.9621528Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-17T17:03:08.9632804Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-17T17:03:09.0022592Z Selecting previously unselected package libshine3:amd64. 2021-05-17T17:03:09.0313828Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-17T17:03:09.0323806Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-17T17:03:09.0628998Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-17T17:03:09.0893439Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-17T17:03:09.0901415Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-17T17:03:09.1182229Z Selecting previously unselected package libspeex1:amd64. 2021-05-17T17:03:09.1415661Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-17T17:03:09.1436977Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-17T17:03:09.1743017Z Selecting previously unselected package libsoxr0:amd64. 2021-05-17T17:03:09.1991129Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-17T17:03:09.1999269Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-17T17:03:09.2342956Z Selecting previously unselected package libswresample3:amd64. 2021-05-17T17:03:09.2573414Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T17:03:09.2584663Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:09.2903243Z Selecting previously unselected package libtheora0:amd64. 2021-05-17T17:03:09.3145173Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-17T17:03:09.3153704Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T17:03:09.3582586Z Selecting previously unselected package libtwolame0:amd64. 2021-05-17T17:03:09.3809006Z Preparing to unpack .../17-libtwolame0_0.4.0-2_amd64.deb ... 2021-05-17T17:03:09.3819309Z Unpacking libtwolame0:amd64 (0.4.0-2) ... 2021-05-17T17:03:09.4142684Z Selecting previously unselected package libvorbisenc2:amd64. 2021-05-17T17:03:09.4367579Z Preparing to unpack .../18-libvorbisenc2_1.3.6-2ubuntu1_amd64.deb ... 2021-05-17T17:03:09.4377997Z Unpacking libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-17T17:03:09.4705545Z Selecting previously unselected package libwavpack1:amd64. 2021-05-17T17:03:09.5000434Z Preparing to unpack .../19-libwavpack1_5.2.0-1ubuntu0.1_amd64.deb ... 2021-05-17T17:03:09.5009403Z Unpacking libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-17T17:03:09.5343595Z Selecting previously unselected package libx264-155:amd64. 2021-05-17T17:03:09.5588889Z Preparing to unpack .../20-libx264-155_2%3a0.155.2917+git0a84d98-2_amd64.deb ... 2021-05-17T17:03:09.5600530Z Unpacking libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... 2021-05-17T17:03:09.6344106Z Selecting previously unselected package libx265-179:amd64. 2021-05-17T17:03:09.6604763Z Preparing to unpack .../21-libx265-179_3.2.1-1build1_amd64.deb ... 2021-05-17T17:03:09.6628907Z Unpacking libx265-179:amd64 (3.2.1-1build1) ... 2021-05-17T17:03:09.8423325Z Selecting previously unselected package libxvidcore4:amd64. 2021-05-17T17:03:09.8709009Z Preparing to unpack .../22-libxvidcore4_2%3a1.3.7-1_amd64.deb ... 2021-05-17T17:03:09.8722791Z Unpacking libxvidcore4:amd64 (2:1.3.7-1) ... 2021-05-17T17:03:09.9143436Z Selecting previously unselected package libzvbi-common. 2021-05-17T17:03:09.9410200Z Preparing to unpack .../23-libzvbi-common_0.2.35-17_all.deb ... 2021-05-17T17:03:09.9416720Z Unpacking libzvbi-common (0.2.35-17) ... 2021-05-17T17:03:09.9742379Z Selecting previously unselected package libzvbi0:amd64. 2021-05-17T17:03:09.9980897Z Preparing to unpack .../24-libzvbi0_0.2.35-17_amd64.deb ... 2021-05-17T17:03:09.9995176Z Unpacking libzvbi0:amd64 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Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T17:03:15.9290548Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-17T17:03:15.9313292Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T17:03:15.9341233Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-17T17:03:15.9362232Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-17T17:03:15.9380859Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T17:03:15.9472864Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-17T17:03:15.9497492Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:03:15.9519291Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-17T17:03:15.9547643Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-17T17:03:15.9567891Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T17:03:15.9588146Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-17T17:03:15.9614905Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-17T17:03:15.9632075Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-17T17:03:15.9652621Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-17T17:03:15.9673909Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-17T17:03:15.9700887Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-17T17:03:15.9718149Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-17T17:03:15.9736943Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-17T17:03:15.9760990Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:03:15.9778201Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-17T17:03:15.9801147Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-17T17:03:15.9823366Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-17T17:03:15.9850730Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-17T17:03:16.0092268Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0117919Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-17T17:03:16.0139133Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0160552Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-17T17:03:16.0183646Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-17T17:03:16.0207528Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-17T17:03:16.0229420Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-17T17:03:16.0255631Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-17T17:03:16.0278914Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0298491Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-17T17:03:16.0319664Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-17T17:03:16.0338064Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-17T17:03:16.0424648Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0444611Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0472429Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0491886Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-17T17:03:16.0510748Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-17T17:03:16.0528398Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0551697Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0571165Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0591105Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:03:16.0682950Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:03:17.1382618Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:19.2408630Z Reading package lists... 2021-05-17T17:03:19.4243491Z Building dependency tree... 2021-05-17T17:03:19.4262007Z Reading state information... 2021-05-17T17:03:19.5870847Z The following additional packages will be installed: 2021-05-17T17:03:19.5874168Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T17:03:19.6389785Z The following NEW packages will be installed: 2021-05-17T17:03:19.6391920Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T17:03:19.6396908Z libmagick++-dev 2021-05-17T17:03:19.6713704Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:19.6714537Z Need to get 309 kB of archives. 2021-05-17T17:03:19.6715417Z After this operation, 2202 kB of additional disk space will be used. 2021-05-17T17:03:19.6717565Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-17T17:03:19.6770110Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-17T17:03:19.6854671Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-17T17:03:19.6986924Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-17T17:03:20.1053091Z Fetched 309 kB in 0s (5685 kB/s) 2021-05-17T17:03:20.1360733Z Selecting previously unselected package libmagick++-6-headers. 2021-05-17T17:03:20.1437091Z (Reading database ... 2021-05-17T17:03:20.1437824Z (Reading database ... 5% 2021-05-17T17:03:20.1438561Z (Reading database ... 10% 2021-05-17T17:03:20.1439225Z (Reading database ... 15% 2021-05-17T17:03:20.1439867Z (Reading database ... 20% 2021-05-17T17:03:20.1440517Z (Reading database ... 25% 2021-05-17T17:03:20.1441170Z (Reading database ... 30% 2021-05-17T17:03:20.1441810Z (Reading database ... 35% 2021-05-17T17:03:20.1442460Z (Reading database ... 40% 2021-05-17T17:03:20.1443115Z (Reading database ... 45% 2021-05-17T17:03:20.1443748Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T17:03:20.8288002Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8289441Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-17T17:03:20.8291046Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T17:03:20.8292599Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8293986Z Selecting previously unselected package libmagick++-dev. 2021-05-17T17:03:20.8295464Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-17T17:03:20.8296844Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8298181Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8299590Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8301168Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8302881Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:03:20.8304075Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:22.6827833Z Reading package lists... 2021-05-17T17:03:22.8686275Z Building dependency tree... 2021-05-17T17:03:22.8707696Z Reading state information... 2021-05-17T17:03:23.0452922Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-17T17:03:23.0455847Z The following additional packages will be installed: 2021-05-17T17:03:23.0457395Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-17T17:03:23.0461508Z libijs-0.35 libjbig2dec0 2021-05-17T17:03:23.0468338Z Suggested packages: 2021-05-17T17:03:23.0469523Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-17T17:03:23.0470482Z ghostscript-x 2021-05-17T17:03:23.0961842Z The following NEW packages will be installed: 2021-05-17T17:03:23.0964860Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-17T17:03:23.0972704Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-17T17:03:23.1152282Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:23.1153061Z Need to get 11.2 MB of archives. 2021-05-17T17:03:23.1153767Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-17T17:03:23.1155640Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-17T17:03:23.1342079Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-17T17:03:23.1355166Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-17T17:03:23.3273955Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-17T17:03:23.3355997Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-17T17:03:23.3358360Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-17T17:03:23.3366019Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-17T17:03:23.3641588Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-17T17:03:23.8119416Z Fetched 11.2 MB in 0s (42.6 MB/s) 2021-05-17T17:03:23.8447072Z Selecting previously unselected package fonts-droid-fallback. 2021-05-17T17:03:23.8527362Z (Reading database ... 2021-05-17T17:03:23.8528161Z (Reading database ... 5% 2021-05-17T17:03:23.8528738Z (Reading 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... 100% 2021-05-17T17:03:23.9848723Z (Reading database ... 267393 files and directories currently installed.) 2021-05-17T17:03:23.9982217Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-17T17:03:24.0207514Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T17:03:24.2143568Z Selecting previously unselected package fonts-noto-mono. 2021-05-17T17:03:24.2390963Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-17T17:03:24.2400607Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T17:03:24.2714959Z Selecting previously unselected package fonts-urw-base35. 2021-05-17T17:03:24.3004902Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-17T17:03:24.3611712Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-17T17:03:24.7321783Z Selecting previously unselected package libgs9-common. 2021-05-17T17:03:24.7610905Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-17T17:03:24.7618828Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:03:24.8582650Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-17T17:03:24.8829457Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-17T17:03:24.8846048Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-17T17:03:24.9085808Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-17T17:03:24.9376061Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-17T17:03:24.9385981Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T17:03:24.9742780Z Selecting previously unselected package libgs9:amd64. 2021-05-17T17:03:24.9982916Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T17:03:24.9993882Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:03:25.2677078Z Selecting previously unselected package ghostscript. 2021-05-17T17:03:25.2965424Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T17:03:25.2973636Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:03:25.3658642Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T17:03:25.3690181Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-17T17:03:25.3711881Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-17T17:03:25.4317618Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T17:03:25.4338355Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T17:03:25.4566319Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:03:25.4590495Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:03:25.4612269Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:03:25.4715338Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T17:03:25.5674513Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:25.5880736Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:03:28.7318262Z Reading package lists... 2021-05-17T17:03:28.9177015Z Building dependency tree... 2021-05-17T17:03:28.9195960Z Reading state information... 2021-05-17T17:03:29.0824643Z The following additional packages will be installed: 2021-05-17T17:03:29.0826189Z libudunits2-0 libudunits2-data 2021-05-17T17:03:29.1308136Z The following NEW packages will be installed: 2021-05-17T17:03:29.1314951Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-17T17:03:29.1546350Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:29.1547320Z Need to get 429 kB of archives. 2021-05-17T17:03:29.1548035Z After this operation, 1026 kB of additional disk space will be used. 2021-05-17T17:03:29.1549905Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-17T17:03:29.1639843Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-17T17:03:29.1726020Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-17T17:03:29.5967370Z Fetched 429 kB in 0s (8556 kB/s) 2021-05-17T17:03:29.6306473Z Selecting previously unselected package libudunits2-data. 2021-05-17T17:03:29.6385574Z (Reading database ... 2021-05-17T17:03:29.6386541Z (Reading database ... 5% 2021-05-17T17:03:29.6387253Z (Reading database ... 10% 2021-05-17T17:03:29.6387945Z (Reading database ... 15% 2021-05-17T17:03:29.6388586Z (Reading database ... 20% 2021-05-17T17:03:29.6389243Z (Reading database ... 25% 2021-05-17T17:03:29.6389890Z (Reading database ... 30% 2021-05-17T17:03:29.6390564Z (Reading database ... 35% 2021-05-17T17:03:29.6391224Z (Reading database ... 40% 2021-05-17T17:03:29.6391987Z (Reading database ... 45% 2021-05-17T17:03:29.6392644Z (Reading database ... 50% 2021-05-17T17:03:29.6433086Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-17T17:03:29.8743387Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-17T17:03:29.8950455Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-17T17:03:29.8963502Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T17:03:29.9684095Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-17T17:03:29.9709695Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-17T17:03:29.9727324Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T17:03:29.9748406Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T17:03:30.0794823Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:32.1437361Z Reading package lists... 2021-05-17T17:03:32.3282971Z Building dependency tree... 2021-05-17T17:03:32.3302217Z Reading state information... 2021-05-17T17:03:32.5384703Z The following NEW packages will be installed: 2021-05-17T17:03:32.5390959Z libjq-dev 2021-05-17T17:03:32.5831093Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:32.5831952Z Need to get 11.2 kB of archives. 2021-05-17T17:03:32.5832780Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-17T17:03:32.5835020Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-17T17:03:32.9921924Z Fetched 11.2 kB in 0s (278 kB/s) 2021-05-17T17:03:33.0216427Z Selecting previously unselected package libjq-dev:amd64. 2021-05-17T17:03:33.0295607Z (Reading database ... 2021-05-17T17:03:33.0296315Z (Reading database ... 5% 2021-05-17T17:03:33.0297206Z (Reading database ... 10% 2021-05-17T17:03:33.0297885Z (Reading database ... 15% 2021-05-17T17:03:33.0298516Z (Reading database ... 20% 2021-05-17T17:03:33.0299121Z (Reading database ... 25% 2021-05-17T17:03:33.0299687Z (Reading database ... 30% 2021-05-17T17:03:33.0300296Z (Reading database ... 35% 2021-05-17T17:03:33.0301178Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-17T17:03:35.3425891Z Reading package lists... 2021-05-17T17:03:35.5269225Z Building dependency tree... 2021-05-17T17:03:35.5289531Z Reading state information... 2021-05-17T17:03:35.7417352Z The following NEW packages will be installed: 2021-05-17T17:03:35.7424041Z libmng2 2021-05-17T17:03:35.7655152Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:35.7655907Z Need to get 168 kB of archives. 2021-05-17T17:03:35.7656965Z After this operation, 571 kB of additional disk space will be used. 2021-05-17T17:03:35.7658840Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-17T17:03:36.1890784Z Fetched 168 kB in 0s (5372 kB/s) 2021-05-17T17:03:36.2213180Z Selecting previously unselected package libmng2:amd64. 2021-05-17T17:03:36.2291666Z (Reading database ... 2021-05-17T17:03:36.2295022Z (Reading database ... 5% 2021-05-17T17:03:36.2295516Z (Reading database ... 10% 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2021-05-17T17:03:36.3609514Z (Reading database ... 267992 files and directories currently installed.) 2021-05-17T17:03:36.3743054Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-17T17:03:36.3765445Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T17:03:36.4480891Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T17:03:36.4509474Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:38.5707498Z Reading package lists... 2021-05-17T17:03:38.7563767Z Building dependency tree... 2021-05-17T17:03:38.7583043Z Reading state information... 2021-05-17T17:03:38.8899763Z E: Unable to locate package libmng1 2021-05-17T17:03:38.9523140Z Reading package lists... 2021-05-17T17:03:39.1406363Z Building dependency tree... 2021-05-17T17:03:39.1427635Z Reading state information... 2021-05-17T17:03:39.2726900Z E: Unable to locate package libapparmor-devel 2021-05-17T17:03:39.3344449Z Reading package lists... 2021-05-17T17:03:39.5215137Z Building dependency tree... 2021-05-17T17:03:39.5235272Z Reading state information... 2021-05-17T17:03:39.6900158Z The following additional packages will be installed: 2021-05-17T17:03:39.6903453Z libij-java 2021-05-17T17:03:39.7383700Z The following NEW packages will be installed: 2021-05-17T17:03:39.7397493Z imagej libij-java 2021-05-17T17:03:39.7911287Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:39.7912143Z Need to get 2328 kB of archives. 2021-05-17T17:03:39.7912972Z After this operation, 2498 kB of additional disk space will be used. 2021-05-17T17:03:39.7914943Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-17T17:03:39.8793109Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-17T17:03:40.2992929Z Fetched 2328 kB in 0s (16.9 MB/s) 2021-05-17T17:03:40.3300097Z Selecting previously unselected package libij-java. 2021-05-17T17:03:40.3378527Z (Reading 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lists... 2021-05-17T17:03:43.9642689Z Building dependency tree... 2021-05-17T17:03:43.9662267Z Reading state information... 2021-05-17T17:03:44.1329633Z Suggested packages: 2021-05-17T17:03:44.1330866Z bowtie2-examples 2021-05-17T17:03:44.1802637Z The following NEW packages will be installed: 2021-05-17T17:03:44.1817771Z bowtie2 2021-05-17T17:03:44.2066618Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:44.2067643Z Need to get 1324 kB of archives. 2021-05-17T17:03:44.2068375Z After this operation, 5630 kB of additional disk space will be used. 2021-05-17T17:03:44.2070160Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-17T17:03:44.7626890Z Fetched 1324 kB in 0s (8272 kB/s) 2021-05-17T17:03:44.7921957Z Selecting previously unselected package bowtie2. 2021-05-17T17:03:44.8001952Z (Reading database ... 2021-05-17T17:03:44.8002698Z (Reading database ... 5% 2021-05-17T17:03:44.8003410Z 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package. 2021-05-17T17:03:48.7624371Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T17:03:48.7625238Z is only available from another source 2021-05-17T17:03:48.7625638Z 2021-05-17T17:03:48.8637244Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-17T17:03:48.9264380Z Reading package lists... 2021-05-17T17:03:49.1215004Z Building dependency tree... 2021-05-17T17:03:49.1234700Z Reading state information... 2021-05-17T17:03:49.1520774Z Package libav-tools is not available, but is referred to by another package. 2021-05-17T17:03:49.1522426Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T17:03:49.1523426Z is only available from another source 2021-05-17T17:03:49.1524323Z However the following packages replace it: 2021-05-17T17:03:49.1525044Z ffmpeg 2021-05-17T17:03:49.1525451Z 2021-05-17T17:03:49.2527075Z E: Package 'libav-tools' has no installation candidate 2021-05-17T17:03:49.3155927Z Reading package lists... 2021-05-17T17:03:49.5092546Z Building dependency tree... 2021-05-17T17:03:49.5112169Z Reading state information... 2021-05-17T17:03:49.6849987Z The following additional packages will be installed: 2021-05-17T17:03:49.6852342Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-17T17:03:49.6854261Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T17:03:49.6855462Z libssh2-1-dev 2021-05-17T17:03:49.6859410Z Suggested packages: 2021-05-17T17:03:49.6860446Z libgcrypt20-doc libmbedtls-doc 2021-05-17T17:03:49.7370719Z The following NEW packages will be installed: 2021-05-17T17:03:49.7374718Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-17T17:03:49.7381781Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T17:03:49.7391225Z libssh2-1-dev 2021-05-17T17:03:49.7581934Z 0 upgraded, 11 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:49.7582724Z Need to get 2667 kB of archives. 2021-05-17T17:03:49.7583435Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-17T17:03:49.7585279Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-17T17:03:49.7662582Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-17T17:03:49.7869821Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-17T17:03:49.7901500Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-17T17:03:49.7945323Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-17T17:03:49.7978776Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-17T17:03:49.8066901Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-17T17:03:49.8166842Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-17T17:03:49.8432445Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-17T17:03:49.8550144Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-17T17:03:49.8556772Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-17T17:03:50.2953752Z Fetched 2667 kB in 0s (20.5 MB/s) 2021-05-17T17:03:50.3258408Z Selecting previously unselected package libgpg-error-dev. 2021-05-17T17:03:50.3339140Z (Reading database ... 2021-05-17T17:03:50.3343965Z (Reading database ... 5% 2021-05-17T17:03:50.3344521Z (Reading database 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2021-05-17T17:03:51.3350991Z (Reading database ... 268047 files and directories currently installed.) 2021-05-17T17:03:51.3352683Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-17T17:03:51.3353753Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-17T17:03:51.3354846Z Selecting previously unselected package libgcrypt20-dev. 2021-05-17T17:03:51.3356085Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-17T17:03:51.3357147Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T17:03:51.3358297Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-17T17:03:51.3359515Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-17T17:03:51.3360583Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T17:03:51.3361563Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-17T17:03:51.3362775Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:03:51.3363867Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3364979Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-17T17:03:51.3366149Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:03:51.3367192Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3368141Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-17T17:03:51.3369303Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:03:51.3370341Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3371406Z Selecting previously unselected package libgit2-28:amd64. 2021-05-17T17:03:51.3372542Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T17:03:51.3373522Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:03:51.3374624Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-17T17:03:51.3376088Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:03:51.3377192Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3378380Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-17T17:03:51.3379538Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-17T17:03:51.3381402Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T17:03:51.3382497Z Selecting previously unselected package libhttp-parser-dev. 2021-05-17T17:03:51.3383605Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-17T17:03:51.3384529Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-17T17:03:51.3385477Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-17T17:03:51.3386494Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T17:03:51.3387358Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:03:51.3466124Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-17T17:03:51.3496027Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3519754Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T17:03:51.3545606Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-17T17:03:51.3563002Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3583931Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3606052Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:03:51.3623115Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T17:03:51.3642281Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T17:03:51.3667644Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:03:51.3688044Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:03:51.3715864Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:03:56.4012896Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T17:03:56.5077485Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:03:58.6624379Z Reading package lists... 2021-05-17T17:03:58.8464211Z Building dependency tree... 2021-05-17T17:03:58.8483839Z Reading state information... 2021-05-17T17:03:59.1056153Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-17T17:03:59.1057516Z libtiff-dev set to manually installed. 2021-05-17T17:03:59.1058495Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:59.1672500Z Reading package lists... 2021-05-17T17:03:59.3517034Z Building dependency tree... 2021-05-17T17:03:59.3536524Z Reading state information... 2021-05-17T17:03:59.5938006Z unixodbc-dev is already the newest version (2.3.7). 2021-05-17T17:03:59.5939389Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:59.6557973Z Reading package lists... 2021-05-17T17:03:59.8438182Z Building dependency tree... 2021-05-17T17:03:59.8457439Z Reading state information... 2021-05-17T17:04:00.0630269Z The following NEW packages will be installed: 2021-05-17T17:04:00.0636841Z libsodium-dev 2021-05-17T17:04:00.0939748Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:00.0940442Z Need to get 169 kB of archives. 2021-05-17T17:04:00.0941615Z After this operation, 826 kB of additional disk space will be used. 2021-05-17T17:04:00.0943454Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-17T17:04:00.5408057Z Fetched 169 kB in 0s (2730 kB/s) 2021-05-17T17:04:00.5708311Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-17T17:04:00.5786438Z (Reading database ... 2021-05-17T17:04:00.5787188Z (Reading database ... 5% 2021-05-17T17:04:00.5787901Z (Reading database ... 10% 2021-05-17T17:04:00.5788571Z (Reading database ... 15% 2021-05-17T17:04:00.5789217Z (Reading database ... 20% 2021-05-17T17:04:00.5789873Z (Reading database ... 25% 2021-05-17T17:04:00.5790526Z (Reading database ... 30% 2021-05-17T17:04:00.5791377Z (Reading database ... 35% 2021-05-17T17:04:00.5792036Z (Reading database ... 40% 2021-05-17T17:04:00.5792693Z (Reading database ... 45% 2021-05-17T17:04:00.5793328Z (Reading database ... 50% 2021-05-17T17:04:00.5821734Z (Reading database ... 55% 2021-05-17T17:04:00.5874438Z (Reading database ... 60% 2021-05-17T17:04:00.5906820Z (Reading database ... 65% 2021-05-17T17:04:00.6043386Z (Reading database ... 70% 2021-05-17T17:04:00.6175604Z (Reading database ... 75% 2021-05-17T17:04:00.6204274Z (Reading database ... 80% 2021-05-17T17:04:00.6787788Z (Reading database ... 85% 2021-05-17T17:04:00.6982921Z (Reading database ... 90% 2021-05-17T17:04:00.7068933Z (Reading database ... 95% 2021-05-17T17:04:00.7072152Z (Reading database ... 100% 2021-05-17T17:04:00.7073004Z (Reading database ... 268550 files and directories currently installed.) 2021-05-17T17:04:00.7201935Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-17T17:04:00.7212759Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T17:04:00.7968957Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T17:04:02.9115970Z Reading package lists... 2021-05-17T17:04:03.1047636Z Building dependency tree... 2021-05-17T17:04:03.1068290Z Reading state information... 2021-05-17T17:04:03.2696776Z The following additional packages will be installed: 2021-05-17T17:04:03.2704740Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-17T17:04:03.3191718Z The following NEW packages will be installed: 2021-05-17T17:04:03.3201300Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-17T17:04:03.3202830Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-17T17:04:03.3385281Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:03.3386968Z Need to get 10.4 MB of archives. 2021-05-17T17:04:03.3387938Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-17T17:04:03.3390431Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-17T17:04:03.3457256Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-17T17:04:03.3650297Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-17T17:04:03.4041419Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-17T17:04:03.4504270Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-17T17:04:03.4872596Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-17T17:04:03.5348834Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-17T17:04:03.6257604Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-17T17:04:04.0508334Z Fetched 10.4 MB in 0s (34.3 MB/s) 2021-05-17T17:04:04.0812483Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-17T17:04:04.0893739Z (Reading database ... 2021-05-17T17:04:04.0894481Z (Reading database ... 5% 2021-05-17T17:04:04.0895063Z (Reading database ... 10% 2021-05-17T17:04:04.0895624Z (Reading database ... 15% 2021-05-17T17:04:04.0896196Z (Reading database ... 20% 2021-05-17T17:04:04.0896795Z (Reading database ... 25% 2021-05-17T17:04:04.0897347Z (Reading database ... 30% 2021-05-17T17:04:04.0897911Z (Reading database ... 35% 2021-05-17T17:04:04.0898468Z (Reading database ... 40% 2021-05-17T17:04:04.0899016Z (Reading database ... 45% 2021-05-17T17:04:04.0899578Z (Reading database 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.../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-17T17:04:04.3361443Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-17T17:04:04.4504002Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-17T17:04:04.4720153Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-17T17:04:04.4728610Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T17:04:04.6145419Z Selecting previously unselected package libtesseract4:amd64. 2021-05-17T17:04:04.6443960Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-17T17:04:04.6450811Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T17:04:04.7863579Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-17T17:04:04.8166935Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-17T17:04:04.8183714Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T17:04:04.9803590Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-17T17:04:05.0095671Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T17:04:05.0105620Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:04:05.1759279Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-17T17:04:05.2023499Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T17:04:05.2040207Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:04:05.5183995Z Selecting previously unselected package tesseract-ocr. 2021-05-17T17:04:05.5411708Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-17T17:04:05.5422860Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-17T17:04:05.6261710Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:04:05.6292951Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-17T17:04:05.6313201Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T17:04:05.6342749Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T17:04:05.6363170Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-17T17:04:05.6387512Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:04:05.6406795Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T17:04:05.6429617Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-17T17:04:05.6457391Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:08.7017542Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:10.8707613Z Reading package lists... 2021-05-17T17:04:11.0609209Z Building dependency tree... 2021-05-17T17:04:11.0629514Z Reading state information... 2021-05-17T17:04:11.3121643Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-17T17:04:11.3123037Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:11.3742031Z Reading package lists... 2021-05-17T17:04:11.5642240Z Building dependency tree... 2021-05-17T17:04:11.5661588Z Reading state information... 2021-05-17T17:04:12.3387508Z The following additional packages will be installed: 2021-05-17T17:04:12.3390224Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T17:04:12.3391660Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-17T17:04:12.3392407Z Suggested packages: 2021-05-17T17:04:12.3393506Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-17T17:04:12.3394314Z The following NEW packages will be installed: 2021-05-17T17:04:12.3395549Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T17:04:12.3396813Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-17T17:04:12.3397782Z 0 upgraded, 10 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:12.3398653Z Need to get 1459 kB of archives. 2021-05-17T17:04:12.3399492Z After this operation, 7754 kB of additional disk space will be used. 2021-05-17T17:04:12.3401079Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-17T17:04:12.3403009Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-17T17:04:12.3404933Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-17T17:04:12.3406920Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-17T17:04:12.3408781Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-17T17:04:12.3410584Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-17T17:04:12.3412442Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-17T17:04:12.3414284Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-17T17:04:12.3416128Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-17T17:04:12.3417942Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-17T17:04:12.4134149Z Fetched 1459 kB in 0s (7413 kB/s) 2021-05-17T17:04:12.4444043Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-17T17:04:12.4526000Z (Reading database ... 2021-05-17T17:04:12.4526776Z (Reading database ... 5% 2021-05-17T17:04:12.4527423Z (Reading database ... 10% 2021-05-17T17:04:12.4528114Z (Reading database ... 15% 2021-05-17T17:04:12.4528751Z (Reading database ... 20% 2021-05-17T17:04:12.4529397Z (Reading database ... 25% 2021-05-17T17:04:12.4530071Z (Reading database ... 30% 2021-05-17T17:04:12.4530705Z (Reading database ... 35% 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2021-05-17T17:04:12.6382859Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-17T17:04:12.6618787Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:04:12.6627247Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:12.6983386Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-17T17:04:12.7195425Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:04:12.7205884Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:12.7544067Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-17T17:04:12.7790504Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:04:12.7800657Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:12.8142776Z Selecting previously unselected package comerr-dev:amd64. 2021-05-17T17:04:12.8390943Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-17T17:04:12.8430009Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T17:04:12.8699642Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-17T17:04:12.8993602Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:04:12.9004802Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:12.9502784Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-17T17:04:12.9741044Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-17T17:04:12.9750160Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T17:04:13.0463038Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-17T17:04:13.0731987Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T17:04:13.0743443Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T17:04:13.1167027Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-17T17:04:13.1460790Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:04:13.1471432Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.1783189Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-17T17:04:13.2029573Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-17T17:04:13.2040889Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T17:04:13.3069529Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T17:04:13.3099685Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.3122490Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T17:04:13.3141230Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T17:04:13.3177403Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.3198819Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.3222510Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.3246397Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.3268624Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:04:13.3288838Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T17:04:13.3322015Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:13.3526697Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:16.6117109Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T17:04:18.8235495Z Reading package lists... 2021-05-17T17:04:19.0090288Z Building dependency tree... 2021-05-17T17:04:19.0111655Z Reading state information... 2021-05-17T17:04:19.1396050Z E: Unable to locate package udunits 2021-05-17T17:04:19.2015139Z Reading package lists... 2021-05-17T17:04:19.3882271Z Building dependency tree... 2021-05-17T17:04:19.3902904Z Reading state information... 2021-05-17T17:04:19.5545802Z The following additional packages will be installed: 2021-05-17T17:04:19.5548454Z libwebpdemux2 2021-05-17T17:04:19.6021937Z The following NEW packages will be installed: 2021-05-17T17:04:19.6025802Z libwebp-dev libwebpdemux2 2021-05-17T17:04:19.6372526Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:19.6373363Z Need to get 277 kB of archives. 2021-05-17T17:04:19.6374135Z After this operation, 965 kB of additional disk space will be used. 2021-05-17T17:04:19.6376102Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-17T17:04:19.6396508Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-17T17:04:20.0655380Z Fetched 277 kB in 0s (7248 kB/s) 2021-05-17T17:04:20.0978824Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-17T17:04:20.1062014Z (Reading database ... 2021-05-17T17:04:20.1063041Z (Reading database ... 5% 2021-05-17T17:04:20.1063624Z (Reading 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... 100% 2021-05-17T17:04:20.2455794Z (Reading database ... 269145 files and directories currently installed.) 2021-05-17T17:04:20.2601119Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-17T17:04:20.2617226Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T17:04:20.2903480Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-17T17:04:20.3138828Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-17T17:04:20.3148742Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T17:04:20.3953676Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T17:04:20.3983014Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T17:04:20.4006923Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:22.5544537Z Reading package lists... 2021-05-17T17:04:22.7418267Z Building dependency tree... 2021-05-17T17:04:22.7437868Z Reading state information... 2021-05-17T17:04:22.9146112Z The following additional packages will be installed: 2021-05-17T17:04:22.9149179Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T17:04:22.9151129Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T17:04:22.9152807Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T17:04:22.9158077Z Suggested packages: 2021-05-17T17:04:22.9159227Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-17T17:04:22.9160159Z Recommended packages: 2021-05-17T17:04:22.9161566Z cargo 2021-05-17T17:04:22.9694464Z The following NEW packages will be installed: 2021-05-17T17:04:22.9706978Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T17:04:22.9708400Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T17:04:22.9717843Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T17:04:22.9952522Z 0 upgraded, 13 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:22.9953249Z Need to get 108 MB of archives. 2021-05-17T17:04:22.9954617Z After this operation, 501 MB of additional disk space will be used. 2021-05-17T17:04:22.9956477Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-17T17:04:22.9992380Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-17T17:04:23.0007556Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-17T17:04:23.0013760Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-17T17:04:23.0053270Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-17T17:04:23.0084885Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-17T17:04:23.0256218Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-17T17:04:23.1575826Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-17T17:04:26.1931404Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-17T17:04:26.9091658Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-17T17:04:26.9744858Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-17T17:04:27.0868891Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-17T17:04:27.1840375Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-17T17:04:27.6211716Z Fetched 108 MB in 4s (25.6 MB/s) 2021-05-17T17:04:27.6517629Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-17T17:04:27.6599657Z (Reading database ... 2021-05-17T17:04:27.6600442Z (Reading database ... 5% 2021-05-17T17:04:27.6601162Z (Reading database ... 10% 2021-05-17T17:04:27.6601835Z (Reading database ... 15% 2021-05-17T17:04:27.6602490Z (Reading database ... 20% 2021-05-17T17:04:27.6603146Z (Reading database ... 25% 2021-05-17T17:04:27.6603790Z (Reading database ... 30% 2021-05-17T17:04:27.6604441Z (Reading database ... 35% 2021-05-17T17:04:27.6605092Z (Reading database ... 40% 2021-05-17T17:04:27.6605749Z (Reading database ... 45% 2021-05-17T17:04:27.6606400Z (Reading database ... 50% 2021-05-17T17:04:27.6645053Z (Reading database ... 55% 2021-05-17T17:04:27.6694486Z (Reading database ... 60% 2021-05-17T17:04:27.6728766Z (Reading database ... 65% 2021-05-17T17:04:27.6877352Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-17T17:04:27.9382988Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T17:04:27.9823224Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-17T17:04:28.0088011Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-17T17:04:28.0096888Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T17:04:28.0823389Z Selecting previously unselected package libsource-highlight4v5. 2021-05-17T17:04:28.1089014Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-17T17:04:28.1099624Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T17:04:28.1539185Z Selecting previously unselected package libxxhash0:amd64. 2021-05-17T17:04:28.1838169Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-17T17:04:28.1847641Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T17:04:28.2080167Z Selecting previously unselected package gdb. 2021-05-17T17:04:28.2379667Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-17T17:04:28.2388010Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T17:04:28.5422731Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-17T17:04:28.5679069Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:04:28.5687923Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:34.2234972Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-17T17:04:34.2535346Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:04:34.2546313Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:37.0188136Z Selecting previously unselected package rustc. 2021-05-17T17:04:37.0495811Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:04:37.0505542Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:37.2241228Z Selecting previously unselected package cargo. 2021-05-17T17:04:37.2538669Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:04:37.2550672Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T17:04:37.5656029Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-17T17:04:37.5957744Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-17T17:04:37.5967214Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T17:04:38.6770978Z Selecting previously unselected package rust-gdb. 2021-05-17T17:04:38.7077547Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-17T17:04:38.7090134Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:38.7692611Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:38.7719423Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T17:04:38.7739501Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T17:04:38.7759977Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:38.7778444Z Setting up libipt2 (2.0.1-1) ... 2021-05-17T17:04:38.7797936Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T17:04:38.7817639Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-17T17:04:38.7838285Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:38.7857170Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T17:04:38.7877291Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T17:04:38.7895822Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T17:04:38.7914860Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T17:04:38.7941679Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:04:38.7971503Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:38.8184887Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:42.1723767Z Reading package lists... 2021-05-17T17:04:42.3641719Z Building dependency tree... 2021-05-17T17:04:42.3661844Z Reading state information... 2021-05-17T17:04:42.5578894Z The following additional packages will be installed: 2021-05-17T17:04:42.5581871Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T17:04:42.5583719Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T17:04:42.5585394Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T17:04:42.5586999Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T17:04:42.5588647Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T17:04:42.5590651Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T17:04:42.5592119Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T17:04:42.5593780Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T17:04:42.5595456Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T17:04:42.5597207Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T17:04:42.5598894Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T17:04:42.5600569Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T17:04:42.5602301Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T17:04:42.5604184Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T17:04:42.5606024Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T17:04:42.5607870Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T17:04:42.5609524Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T17:04:42.5611216Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T17:04:42.5613021Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T17:04:42.5614450Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T17:04:42.5615850Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T17:04:42.5617323Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T17:04:42.5618726Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T17:04:42.5620049Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T17:04:42.5621652Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T17:04:42.5623332Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T17:04:42.5627230Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T17:04:42.5628564Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T17:04:42.5629888Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T17:04:42.5631126Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T17:04:42.5632317Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T17:04:42.5633458Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T17:04:42.5634699Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T17:04:42.5635986Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T17:04:42.5637349Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T17:04:42.5638727Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T17:04:42.5640005Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T17:04:42.5641242Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T17:04:42.5642448Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T17:04:42.5643741Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T17:04:42.5645073Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T17:04:42.5646268Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-17T17:04:42.5647480Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T17:04:42.5648907Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T17:04:42.5650393Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T17:04:42.5651664Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T17:04:42.5652921Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T17:04:42.5654491Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T17:04:42.5655664Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T17:04:42.5656354Z Suggested packages: 2021-05-17T17:04:42.5657314Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-17T17:04:42.5658501Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-17T17:04:42.5659857Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-17T17:04:42.5661345Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-17T17:04:42.5662501Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-17T17:04:42.5663734Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-17T17:04:42.5665025Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-17T17:04:42.5666339Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-17T17:04:42.5667575Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-17T17:04:42.5668854Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-17T17:04:42.5670235Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-17T17:04:42.5671625Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-17T17:04:42.5672930Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-17T17:04:42.5673905Z wpagui libengine-pkcs11-openssl 2021-05-17T17:04:42.6477725Z The following NEW packages will be installed: 2021-05-17T17:04:42.6480306Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T17:04:42.6482162Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T17:04:42.6484008Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T17:04:42.6485757Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T17:04:42.6487512Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T17:04:42.6489179Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T17:04:42.6490743Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T17:04:42.6492509Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T17:04:42.6494288Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T17:04:42.6495997Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T17:04:42.6497733Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T17:04:42.6499536Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T17:04:42.6502937Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T17:04:42.6507582Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T17:04:42.6509273Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T17:04:42.6510833Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T17:04:42.6512346Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T17:04:42.6513878Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T17:04:42.6515472Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T17:04:42.6516769Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T17:04:42.6518026Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T17:04:42.6519362Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T17:04:42.6520623Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T17:04:42.6521813Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T17:04:42.6523365Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T17:04:42.6524861Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T17:04:42.6526324Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T17:04:42.6527843Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T17:04:42.6529489Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T17:04:42.6530925Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T17:04:42.6532263Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T17:04:42.6533583Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T17:04:42.6534991Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T17:04:42.6536460Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T17:04:42.6538046Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T17:04:42.6539615Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T17:04:42.6541333Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T17:04:42.6542855Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T17:04:42.6544074Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T17:04:42.6545381Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T17:04:42.6546683Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T17:04:42.6547920Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-17T17:04:42.6549153Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T17:04:42.6550570Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T17:04:42.6552059Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T17:04:42.6553345Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T17:04:42.6554594Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T17:04:42.6555975Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T17:04:42.6557129Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T17:04:42.6721064Z 0 upgraded, 214 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:42.6721860Z Need to get 183 MB of archives. 2021-05-17T17:04:42.6722581Z After this operation, 776 MB of additional disk space will be used. 2021-05-17T17:04:42.6724647Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-17T17:04:42.6750655Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-17T17:04:42.7694460Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-17T17:04:42.7727130Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-17T17:04:42.7741319Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-17T17:04:42.7760432Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-17T17:04:42.7770445Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-17T17:04:42.7792035Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-17T17:04:42.7810199Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-17T17:04:42.7846413Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-17T17:04:42.7902391Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-17T17:04:42.7979893Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-17T17:04:42.8237605Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-17T17:04:42.8251256Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-17T17:04:42.8259191Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-17T17:04:42.8266106Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-17T17:04:42.8272867Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-17T17:04:42.8281699Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-17T17:04:42.8293230Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-17T17:04:42.8308956Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-17T17:04:42.8335710Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-17T17:04:42.8356140Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-17T17:04:42.8367917Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-17T17:04:42.9378595Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-17T17:04:42.9949242Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-17T17:04:42.9985800Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-17T17:04:43.0036094Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-17T17:04:43.0227218Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-17T17:04:43.0444145Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-17T17:04:43.0563910Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-17T17:04:43.0723363Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-17T17:04:43.1314167Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-17T17:04:43.1916987Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-17T17:04:43.2017432Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-17T17:04:43.2056875Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-17T17:04:43.2116308Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-17T17:04:43.6255111Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-17T17:04:43.6315197Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-17T17:04:43.6686861Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-17T17:04:43.6854801Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-17T17:04:43.6954201Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-17T17:04:43.6988062Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-17T17:04:43.7002534Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-17T17:04:43.7054605Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-17T17:04:43.7081625Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-17T17:04:43.7124967Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-17T17:04:43.7154753Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-17T17:04:43.7272389Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-17T17:04:43.7299014Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-17T17:04:43.7424515Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-17T17:04:43.7449113Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-17T17:04:43.7462404Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-17T17:04:43.7498473Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-17T17:04:43.7530587Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-17T17:04:43.7667120Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-17T17:04:43.7696121Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-17T17:04:44.0135756Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-17T17:04:44.0419429Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-17T17:04:44.0441927Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-17T17:04:44.0535378Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-17T17:04:44.0541863Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-17T17:04:44.0551575Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-17T17:04:44.0572349Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-17T17:04:44.0616728Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-17T17:04:44.0640678Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-17T17:04:44.0741364Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-17T17:04:44.0793211Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-17T17:04:44.0842021Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-17T17:04:44.1180166Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-17T17:04:44.1433639Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-17T17:04:44.2718506Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-17T17:04:44.2763996Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-17T17:04:44.2839802Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-17T17:04:44.2872552Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-17T17:04:44.2954402Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-17T17:04:44.3109996Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-17T17:04:44.3168628Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-17T17:04:44.5130246Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-17T17:04:44.5214701Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-17T17:04:44.5304426Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-17T17:04:44.5931894Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-17T17:04:44.5964605Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-17T17:04:44.6029951Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-17T17:04:44.6230681Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-17T17:04:44.7234441Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-17T17:04:44.7922534Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-17T17:04:44.8010075Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-17T17:04:44.8060063Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-17T17:04:44.8099652Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-17T17:04:44.8225480Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-17T17:04:44.8229259Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-17T17:04:44.8260575Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-17T17:04:44.8277059Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-17T17:04:44.8318931Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-17T17:04:44.8348455Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-17T17:04:44.8363055Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-17T17:04:44.8884671Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-17T17:04:44.8984345Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-17T17:04:44.9029137Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-17T17:04:44.9037072Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-17T17:04:44.9066134Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-17T17:04:44.9363656Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-17T17:04:44.9549335Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-17T17:04:44.9669485Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-17T17:04:44.9757281Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-17T17:04:45.0050637Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-17T17:04:45.0142468Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-17T17:04:46.0686411Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-17T17:04:46.0801087Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-17T17:04:46.0907675Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-17T17:04:46.1505577Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-17T17:04:46.3304107Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-17T17:04:46.3369358Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-17T17:04:46.3505174Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-17T17:04:46.3896416Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-17T17:04:46.4017008Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-17T17:04:46.5053582Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-17T17:04:46.5327511Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-17T17:04:46.5439910Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-17T17:04:46.5442071Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-17T17:04:46.5493793Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-17T17:04:46.5636935Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-17T17:04:46.5863940Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-17T17:04:46.5898307Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-17T17:04:46.5906895Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-17T17:04:46.5973540Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-17T17:04:46.6033589Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-17T17:04:46.6063842Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-17T17:04:46.6352895Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-17T17:04:46.6433296Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-17T17:04:46.6535953Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-17T17:04:46.6684837Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-17T17:04:46.6840682Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-17T17:04:46.7335285Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-17T17:04:46.7418288Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-17T17:04:46.7460851Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-17T17:04:46.7577125Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-17T17:04:46.7835603Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-17T17:04:46.7983604Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-17T17:04:46.8153173Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-17T17:04:46.8223344Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-17T17:04:46.8377384Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-17T17:04:46.8738530Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-17T17:04:46.8831967Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-17T17:04:46.8925286Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-17T17:04:46.9020293Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-17T17:04:46.9116571Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-17T17:04:46.9307070Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-17T17:04:46.9723645Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-17T17:04:47.0855137Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-17T17:04:47.0928074Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-17T17:04:47.1159488Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-17T17:04:47.1294356Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-17T17:04:47.1399287Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-17T17:04:47.1636847Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-17T17:04:47.1696811Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-17T17:04:47.2793239Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-17T17:04:47.3148936Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-17T17:04:47.3529974Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-17T17:04:47.4813156Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-17T17:04:47.5003951Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-17T17:04:47.5830385Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-17T17:04:47.5918140Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-17T17:04:47.6189770Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-17T17:04:47.6224386Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-17T17:04:47.6302288Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-17T17:04:47.6342565Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-17T17:04:47.6632292Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-17T17:04:47.6899969Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-17T17:04:47.8223994Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-17T17:04:47.8341448Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-17T17:04:47.8446470Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-17T17:04:47.8499271Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-17T17:04:47.8579597Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-17T17:04:47.8717486Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-17T17:04:47.9137724Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-17T17:04:47.9184203Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-17T17:04:47.9339467Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-17T17:04:47.9839909Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-17T17:04:47.9954284Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-17T17:04:48.0027946Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-17T17:04:48.0115485Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-17T17:04:48.0752335Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-17T17:04:48.0859708Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-17T17:04:48.2395437Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-17T17:04:48.2475966Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-17T17:04:48.2806756Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-17T17:04:48.3104407Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-17T17:04:48.3233324Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-17T17:04:48.3356367Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-17T17:04:48.3582056Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-17T17:04:48.3649898Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-17T17:04:48.4796862Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-17T17:04:48.5066148Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-17T17:04:48.5713023Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-17T17:04:48.6621629Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-17T17:04:48.6843097Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-17T17:04:48.6933534Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-17T17:04:48.7007148Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-17T17:04:48.7102031Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-17T17:04:48.7925859Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-17T17:04:49.0384794Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-17T17:04:49.0639989Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-17T17:04:49.1046096Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-17T17:04:51.0089854Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-17T17:04:51.2418550Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-17T17:04:51.2657733Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-17T17:04:51.2778556Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-17T17:04:51.3017069Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-17T17:04:51.3030633Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-17T17:04:51.3144850Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-17T17:04:51.3259642Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-17T17:04:51.3270578Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-17T17:04:51.3277165Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-17T17:04:52.4052031Z Fetched 183 MB in 9s (21.1 MB/s) 2021-05-17T17:04:52.4392661Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-17T17:04:52.4472446Z (Reading database ... 2021-05-17T17:04:52.4473228Z (Reading database ... 5% 2021-05-17T17:04:52.4473901Z (Reading database ... 10% 2021-05-17T17:04:52.4474586Z (Reading database ... 15% 2021-05-17T17:04:52.4475225Z (Reading database ... 20% 2021-05-17T17:04:52.4475866Z (Reading database ... 25% 2021-05-17T17:04:52.4476510Z (Reading database ... 30% 2021-05-17T17:04:52.4477140Z (Reading database ... 35% 2021-05-17T17:04:52.4477783Z (Reading database ... 40% 2021-05-17T17:04:52.4478422Z (Reading database ... 45% 2021-05-17T17:04:52.4479067Z (Reading database ... 50% 2021-05-17T17:04:52.4515584Z (Reading database ... 55% 2021-05-17T17:04:52.4562208Z (Reading database ... 60% 2021-05-17T17:04:52.4597356Z (Reading database ... 65% 2021-05-17T17:04:52.4730039Z (Reading database ... 70% 2021-05-17T17:04:52.4861766Z (Reading database ... 75% 2021-05-17T17:04:52.4889271Z (Reading database ... 80% 2021-05-17T17:04:52.5328893Z (Reading database ... 85% 2021-05-17T17:04:52.5687104Z (Reading database ... 90% 2021-05-17T17:04:52.5777663Z (Reading database ... 95% 2021-05-17T17:04:52.5778687Z (Reading database ... 100% 2021-05-17T17:04:52.5779761Z (Reading database ... 269928 files and directories currently installed.) 2021-05-17T17:04:52.5916283Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-17T17:04:52.5935646Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-17T17:04:52.6342230Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-17T17:04:52.6555657Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-17T17:04:52.6634991Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:04:52.8463056Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-17T17:04:52.8679200Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:04:52.8692336Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:04:52.9062659Z Selecting previously unselected package libegl1:amd64. 2021-05-17T17:04:52.9307472Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:04:52.9320664Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:04:52.9663055Z Selecting previously unselected package libevdev2:amd64. 2021-05-17T17:04:52.9879939Z Preparing to unpack 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2021-05-17T17:05:26.0853195Z Setting up libkmldom1:amd64 (1.3.0-8build1) ... 2021-05-17T17:05:26.0885706Z Setting up libspatialite7:amd64 (4.3.0a-6build1) ... 2021-05-17T17:05:26.0906718Z Setting up libgcr-ui-3-1:amd64 (3.36.0-2build1) ... 2021-05-17T17:05:26.0930215Z Setting up python3-matplotlib (3.1.2-1ubuntu4) ... 2021-05-17T17:05:27.0560923Z Setting up libkmlengine1:amd64 (1.3.0-8build1) ... 2021-05-17T17:05:27.0581930Z Setting up libqt5keychain1:amd64 (0.10.0-1build1) ... 2021-05-17T17:05:27.0610755Z Setting up libsqlite3-mod-spatialite:amd64 (4.3.0a-6build1) ... 2021-05-17T17:05:27.0634046Z Setting up qdoc-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:27.0657613Z Setting up libqt5positioning5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:27.0682007Z Setting up proj-bin (6.3.1-1) ... 2021-05-17T17:05:27.0699803Z Setting up libqca-qt5-2-plugins:amd64 (2.2.1-2build1) ... 2021-05-17T17:05:27.0717683Z Setting up libgstreamer-plugins-base1.0-0:amd64 (1.16.2-4) ... 2021-05-17T17:05:27.0742403Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-17T17:05:27.4621469Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-17T17:05:27.4638957Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:27.4662761Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-17T17:05:27.6280798Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-17T17:05:27.6298682Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-17T17:05:27.7904578Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:27.7927566Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-17T17:05:27.9852225Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-17T17:05:27.9872020Z Setting up gcr (3.36.0-2build1) ... 2021-05-17T17:05:27.9890450Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:27.9916839Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-17T17:05:28.1207980Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T17:05:28.1210579Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T17:05:28.6254137Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-17T17:05:28.9068469Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:28.9093057Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-17T17:05:28.9112607Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:28.9134636Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:05:28.9154477Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:28.9174310Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:28.9193905Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-17T17:05:29.0732169Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:29.0733883Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T17:05:29.0735293Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:29.0736610Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T17:05:29.1156651Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:29.1157890Z if direction is "increasing": 2021-05-17T17:05:29.1159369Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:29.1160394Z elif direction is "decreasing": 2021-05-17T17:05:29.1334803Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:29.1336026Z if direction is "increasing": 2021-05-17T17:05:29.1337413Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:29.1338396Z elif direction is "decreasing": 2021-05-17T17:05:30.0507739Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:30.0509492Z if props["offset_coordinates"] is "data": 2021-05-17T17:05:30.0511390Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T17:05:30.0512752Z if props["coordinates"] is not "data": 2021-05-17T17:05:30.7660453Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-17T17:05:31.2917608Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T17:05:31.2921534Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T17:05:31.2924980Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-17T17:05:32.5000611Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-17T17:05:32.5034462Z First installation detected... 2021-05-17T17:05:32.5052281Z Checking NSS setup... 2021-05-17T17:05:32.5094265Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-17T17:05:32.5122292Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:32.5144431Z Setting up python3-owslib (0.19.1-1) ... 2021-05-17T17:05:32.8082312Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-17T17:05:32.8104812Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-17T17:05:32.8128256Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-17T17:05:32.8150524Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-17T17:05:32.8171100Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-17T17:05:32.8193083Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-17T17:05:32.8217045Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-17T17:05:32.8243622Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-17T17:05:32.8269519Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-17T17:05:33.0428791Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-17T17:05:33.0449650Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-17T17:05:33.0475634Z Setting up grass-core (7.8.2-1build3) ... 2021-05-17T17:05:33.4035792Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:33.4039634Z if value is '': 2021-05-17T17:05:33.5001936Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:33.5003063Z if do_profiling is "True" or do_profiling is "1": 2021-05-17T17:05:33.5004207Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:33.5005220Z if do_profiling is "True" or do_profiling is "1": 2021-05-17T17:05:33.5006373Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T17:05:33.5007420Z if driver_string is not None and driver_string is not "": 2021-05-17T17:05:33.5442294Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:33.5443549Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T17:05:33.5444861Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:05:33.5445986Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T17:05:33.6079239Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-17T17:05:33.6103479Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.6177035Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-17T17:05:33.6197538Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.6219959Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.6377599Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:33.6397850Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.6417364Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.6437489Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:05:33.6461923Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.6486806Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-17T17:05:33.7451762Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:33.7502867Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.7526791Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:33.7548838Z Setting up modemmanager (1.12.8-1) ... 2021-05-17T17:05:33.8775430Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-17T17:05:33.8778521Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-17T17:05:34.3981325Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:34.3999425Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:05:34.4020390Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-17T17:05:34.4044692Z Setting up libqt5svg5:amd64 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2021-05-17T17:05:34.4395773Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-17T17:05:34.4418319Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-17T17:05:34.4437319Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:05:34.4461261Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:34.4484504Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-17T17:05:34.6130964Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-17T17:05:34.6154366Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:34.6174476Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:05:34.6194999Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:05.8776500Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:06:05.8797046Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-17T17:06:05.8818796Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:05.8839938Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:06:05.8856424Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:05.8876954Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:05.8896949Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:06:05.8919030Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.0336187Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.0359424Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-17T17:06:06.0380080Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.0402602Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-17T17:06:06.0421761Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.2099180Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.2124585Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.2152060Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:06:06.2265462Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-17T17:06:06.2371337Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-17T17:06:06.9756274Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T17:06:06.9926375Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-17T17:06:07.0165100Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-17T17:06:07.0317666Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-17T17:06:07.0479664Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:06:07.0775454Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-17T17:06:07.3286715Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:06:18.9371829Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-17T17:06:18.9542721Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-17T17:06:21.0302801Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-17T17:06:21.0303328Z with: 2021-05-17T17:06:21.0303786Z github_slug: neuroconductor/spm12r 2021-05-17T17:06:21.0304213Z env: 2021-05-17T17:06:21.0304632Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:06:21.0305092Z TIC_DEPLOY_KEY: 2021-05-17T17:06:21.0305864Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:06:21.0307611Z GITHUB_PAT: *** 2021-05-17T17:06:21.0308398Z COVERALLS_TOKEN: *** 2021-05-17T17:06:21.0308858Z continue-on-error: true 2021-05-17T17:06:21.0309316Z VDIFFR_RUN_TESTS: 2021-05-17T17:06:21.0310261Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:06:21.0310698Z TZ: UTC 2021-05-17T17:06:21.0311071Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:06:21.0311453Z NOT_CRAN: true 2021-05-17T17:06:21.0311813Z ##[endgroup] 2021-05-17T17:06:21.0638800Z repo slug is: neuroconductor/spm12r 2021-05-17T17:06:21.0735129Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-17T17:06:21.0735689Z env: 2021-05-17T17:06:21.0736131Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:06:21.0736579Z TIC_DEPLOY_KEY: 2021-05-17T17:06:21.0737367Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:06:21.0738656Z GITHUB_PAT: *** 2021-05-17T17:06:21.0739420Z COVERALLS_TOKEN: *** 2021-05-17T17:06:21.0739903Z continue-on-error: true 2021-05-17T17:06:21.0740351Z VDIFFR_RUN_TESTS: 2021-05-17T17:06:21.0740963Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:06:21.0741404Z TZ: UTC 2021-05-17T17:06:21.0741766Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:06:21.0742170Z NOT_CRAN: true 2021-05-17T17:06:21.0742528Z ##[endgroup] 2021-05-17T17:06:21.2728145Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-17T17:06:21.2728719Z with: 2021-05-17T17:06:21.2729079Z repo_name: spm12r 2021-05-17T17:06:21.2729455Z repo_version: 2.8.1 2021-05-17T17:06:21.2729856Z runner_os: Linux 2021-05-17T17:06:21.2730228Z R_version: 4.1 2021-05-17T17:06:21.2730550Z env: 2021-05-17T17:06:21.2730969Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:06:21.2731417Z TIC_DEPLOY_KEY: 2021-05-17T17:06:21.2732200Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:06:21.2733985Z GITHUB_PAT: *** 2021-05-17T17:06:21.2734768Z COVERALLS_TOKEN: *** 2021-05-17T17:06:21.2735248Z continue-on-error: true 2021-05-17T17:06:21.2735715Z VDIFFR_RUN_TESTS: 2021-05-17T17:06:21.2736174Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:06:21.2736614Z TZ: UTC 2021-05-17T17:06:21.2737053Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:06:21.2737484Z NOT_CRAN: true 2021-05-17T17:06:21.2737877Z ##[endgroup] 2021-05-17T17:06:21.3079487Z Package: spm12r 2021-05-17T17:06:21.3084612Z Version: 2.8.1 2021-05-17T17:06:21.3086419Z OS: Linux 2021-05-17T17:06:21.3185140Z ##[group]Run install.packages('remotes') 2021-05-17T17:06:21.3185989Z install.packages('remotes') 2021-05-17T17:06:21.3186767Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-17T17:06:21.3187760Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-17T17:06:21.3195399Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:06:21.3195813Z env: 2021-05-17T17:06:21.3196230Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:06:21.3196698Z TIC_DEPLOY_KEY: 2021-05-17T17:06:21.3197483Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:06:21.3198779Z GITHUB_PAT: *** 2021-05-17T17:06:21.3199566Z COVERALLS_TOKEN: *** 2021-05-17T17:06:21.3200039Z continue-on-error: true 2021-05-17T17:06:21.3200502Z VDIFFR_RUN_TESTS: 2021-05-17T17:06:21.3200956Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:06:21.3201416Z TZ: UTC 2021-05-17T17:06:21.3201778Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:06:21.3202290Z NOT_CRAN: true 2021-05-17T17:06:21.3202647Z ##[endgroup] 2021-05-17T17:06:21.4883688Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:06:21.4884606Z (as ‘lib’ is unspecified) 2021-05-17T17:06:36.3242930Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-17T17:06:36.5967914Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-17T17:06:36.6092677Z ================================================== 2021-05-17T17:06:36.6094001Z downloaded 145 KB 2021-05-17T17:06:36.6094600Z 2021-05-17T17:06:36.9004090Z * installing *source* package ‘remotes’ ... 2021-05-17T17:06:36.9044951Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-17T17:06:36.9046061Z ** using staged installation 2021-05-17T17:06:36.9215974Z ** R 2021-05-17T17:06:36.9405003Z ** inst 2021-05-17T17:06:36.9416115Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:06:38.8560852Z ** help 2021-05-17T17:06:38.9449239Z *** installing help indices 2021-05-17T17:06:39.0068948Z ** building package indices 2021-05-17T17:06:39.2496599Z ** installing vignettes 2021-05-17T17:06:39.2564920Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:06:39.4419459Z ** testing if installed package can be loaded from final location 2021-05-17T17:06:39.6617077Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:06:39.6640285Z * DONE (remotes) 2021-05-17T17:06:39.6742291Z 2021-05-17T17:06:39.6743503Z The downloaded source packages are in 2021-05-17T17:06:39.6745315Z ‘/tmp/RtmpmUQiOd/downloaded_packages’ 2021-05-17T17:06:57.5804317Z ##[group]Run actions/cache@v1 2021-05-17T17:06:57.5804745Z with: 2021-05-17T17:06:57.5805151Z path: /home/runner/work/_temp/Library 2021-05-17T17:06:57.5808017Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-58f2b718d1386ce07745dfa4972841aa034cbf77f9c7102fc76f302b7c502a05 2021-05-17T17:06:57.5811693Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-17T17:06:57.5812901Z env: 2021-05-17T17:06:57.5813327Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:06:57.5813784Z TIC_DEPLOY_KEY: 2021-05-17T17:06:57.5814560Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:06:57.5816491Z GITHUB_PAT: *** 2021-05-17T17:06:57.5817281Z COVERALLS_TOKEN: *** 2021-05-17T17:06:57.5817750Z continue-on-error: true 2021-05-17T17:06:57.5818213Z VDIFFR_RUN_TESTS: 2021-05-17T17:06:57.5818671Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:06:57.5819175Z TZ: UTC 2021-05-17T17:06:57.5819536Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:06:57.5819930Z NOT_CRAN: true 2021-05-17T17:06:57.5820275Z ##[endgroup] 2021-05-17T17:06:57.6255447Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T17:06:57.6312690Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T17:06:57.6313490Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T17:06:57.6314210Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-17T17:06:57.6314829Z sudo -s eval "$sysreqs" 2021-05-17T17:06:57.6360613Z shell: /usr/bin/bash -e {0} 2021-05-17T17:06:57.6361002Z env: 2021-05-17T17:06:57.6361417Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:06:57.6361887Z TIC_DEPLOY_KEY: 2021-05-17T17:06:57.6362679Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:06:57.6364026Z GITHUB_PAT: *** 2021-05-17T17:06:57.6364799Z COVERALLS_TOKEN: *** 2021-05-17T17:06:57.6365279Z continue-on-error: true 2021-05-17T17:06:57.6365733Z VDIFFR_RUN_TESTS: 2021-05-17T17:06:57.6366205Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:06:57.6366624Z TZ: UTC 2021-05-17T17:06:57.6367028Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:06:57.6367567Z NOT_CRAN: true 2021-05-17T17:06:57.6368036Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-17T17:06:57.6368485Z ##[endgroup] 2021-05-17T17:06:57.8325161Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:06:58.8872605Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-17T17:07:14.2740123Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-17T17:07:14.2741171Z crayon (NA -> 1.4.1) [CRAN] 2021-05-17T17:07:14.2741851Z R6 (NA -> 2.5.0) [CRAN] 2021-05-17T17:07:14.2742486Z desc (NA -> 1.3.0) [CRAN] 2021-05-17T17:07:14.2743162Z debugme (NA -> 1.1.0) [CRAN] 2021-05-17T17:07:14.2765145Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-17T17:07:14.2778243Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:07:14.2779122Z (as ‘lib’ is unspecified) 2021-05-17T17:07:28.9005410Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-17T17:07:29.1699035Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-17T17:07:29.1752708Z ================================================== 2021-05-17T17:07:29.1753541Z downloaded 60 KB 2021-05-17T17:07:29.1754014Z 2021-05-17T17:07:29.1794859Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-17T17:07:29.9272923Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-17T17:07:29.9273799Z ================================================== 2021-05-17T17:07:29.9274295Z downloaded 34 KB 2021-05-17T17:07:29.9274622Z 2021-05-17T17:07:29.9318247Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-17T17:07:30.1217848Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-17T17:07:30.1271234Z ================================================== 2021-05-17T17:07:30.1271768Z downloaded 62 KB 2021-05-17T17:07:30.1272054Z 2021-05-17T17:07:30.1392317Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-17T17:07:30.4102516Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-17T17:07:30.4270610Z ================================================== 2021-05-17T17:07:30.4271201Z downloaded 285 KB 2021-05-17T17:07:30.4271495Z 2021-05-17T17:07:30.4312986Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-17T17:07:31.1655187Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-17T17:07:31.1921324Z ================================================== 2021-05-17T17:07:31.1921930Z downloaded 973 KB 2021-05-17T17:07:31.1922207Z 2021-05-17T17:07:31.4533023Z * installing *source* package ‘rprojroot’ ... 2021-05-17T17:07:31.4556671Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-17T17:07:31.4557934Z ** using staged installation 2021-05-17T17:07:31.4696726Z ** R 2021-05-17T17:07:31.4742975Z ** inst 2021-05-17T17:07:31.4752810Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:07:31.9663624Z ** help 2021-05-17T17:07:31.9927586Z *** installing help indices 2021-05-17T17:07:32.0214376Z *** copying figures 2021-05-17T17:07:32.0218635Z ** building package indices 2021-05-17T17:07:32.2234849Z ** installing vignettes 2021-05-17T17:07:32.2292086Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:07:32.4148079Z ** testing if installed package can be loaded from final location 2021-05-17T17:07:32.6008249Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:07:32.6016279Z * DONE (rprojroot) 2021-05-17T17:07:32.8466862Z * installing *source* package ‘crayon’ ... 2021-05-17T17:07:32.8486384Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-17T17:07:32.8487663Z ** using staged installation 2021-05-17T17:07:32.8628595Z ** R 2021-05-17T17:07:32.8721151Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:07:33.7421274Z ** help 2021-05-17T17:07:33.7966933Z *** installing help indices 2021-05-17T17:07:33.8357349Z ** building package indices 2021-05-17T17:07:34.0654611Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:07:34.2523792Z ** testing if installed package can be loaded from final location 2021-05-17T17:07:34.4447611Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:07:34.4458247Z * DONE (crayon) 2021-05-17T17:07:34.6793914Z * installing *source* package ‘R6’ ... 2021-05-17T17:07:34.6811916Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-17T17:07:34.6813110Z ** using staged installation 2021-05-17T17:07:34.6943248Z ** R 2021-05-17T17:07:34.7011366Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:07:35.1965583Z ** help 2021-05-17T17:07:35.2164598Z *** installing help indices 2021-05-17T17:07:35.2362843Z *** copying figures 2021-05-17T17:07:35.2367399Z ** building package indices 2021-05-17T17:07:35.4334096Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:07:35.6153265Z ** testing if installed package can be loaded from final location 2021-05-17T17:07:35.8000261Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:07:35.8001017Z * DONE (R6) 2021-05-17T17:07:36.1079859Z * installing *source* package ‘desc’ ... 2021-05-17T17:07:36.1130394Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-17T17:07:36.1131814Z ** using staged installation 2021-05-17T17:07:36.1287522Z ** R 2021-05-17T17:07:36.1414285Z ** inst 2021-05-17T17:07:36.1430722Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:07:37.7365776Z ** help 2021-05-17T17:07:37.8630404Z *** installing help indices 2021-05-17T17:07:37.9514045Z ** building package indices 2021-05-17T17:07:38.2261905Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:07:38.4187672Z ** testing if installed package can be loaded from final location 2021-05-17T17:07:38.6392971Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:07:38.6411732Z * DONE (desc) 2021-05-17T17:07:38.8973253Z * installing *source* package ‘debugme’ ... 2021-05-17T17:07:38.9005506Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-17T17:07:38.9006567Z ** using staged installation 2021-05-17T17:07:38.9114436Z ** R 2021-05-17T17:07:38.9146337Z ** inst 2021-05-17T17:07:38.9166826Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:07:39.2341675Z ** help 2021-05-17T17:07:39.2464759Z *** installing help indices 2021-05-17T17:07:39.2682900Z ** building package indices 2021-05-17T17:07:39.4631459Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:07:39.6518458Z ** testing if installed package can be loaded from final location 2021-05-17T17:07:39.8405529Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:07:39.8406570Z * DONE (debugme) 2021-05-17T17:07:39.8455123Z 2021-05-17T17:07:39.8456020Z The downloaded source packages are in 2021-05-17T17:07:39.8457425Z ‘/tmp/RtmpLnxuTp/downloaded_packages’ 2021-05-17T17:07:39.8473161Z Running `R CMD build`... 2021-05-17T17:07:40.0879598Z * checking for file ‘/tmp/RtmpLnxuTp/remotes68fc21825cc1/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-17T17:07:40.0881166Z * preparing ‘sysreqs’: 2021-05-17T17:07:40.0882269Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:07:40.0883679Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:07:40.0884733Z * checking for empty or unneeded directories 2021-05-17T17:07:40.0885780Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:07:40.0886739Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-17T17:07:40.0889071Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:07:40.0890090Z (as ‘lib’ is unspecified) 2021-05-17T17:07:40.2944530Z * installing *source* package ‘sysreqs’ ... 2021-05-17T17:07:40.2946546Z ** using staged installation 2021-05-17T17:07:40.3076181Z ** R 2021-05-17T17:07:40.3109637Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:07:40.6837152Z ** help 2021-05-17T17:07:40.7057578Z *** installing help indices 2021-05-17T17:07:40.7227202Z ** building package indices 2021-05-17T17:07:40.9171609Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:07:41.1165273Z ** testing if installed package can be loaded from final location 2021-05-17T17:07:41.3149978Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:07:41.3156521Z * DONE (sysreqs) 2021-05-17T17:07:58.7270206Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T17:07:58.7272511Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-17T17:07:58.7279406Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-17T17:07:58.7671510Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-17T17:07:58.7949595Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T17:07:58.8760376Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T17:07:59.0029433Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-17T17:07:59.0338337Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-17T17:07:59.1914296Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T17:08:00.9074196Z Reading package lists... 2021-05-17T17:08:00.9075230Z Reading package lists... 2021-05-17T17:08:00.9075951Z Building dependency tree... 2021-05-17T17:08:00.9076726Z Reading state information... 2021-05-17T17:08:00.9937289Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-17T17:08:00.9938898Z libicu-dev set to manually installed. 2021-05-17T17:08:00.9940144Z libgit2-dev is already the newest version (0.28.4+dfsg.1-2). 2021-05-17T17:08:00.9942223Z libssh2-1-dev is already the newest version (1.8.0-2.1build1). 2021-05-17T17:08:00.9943200Z libssh2-1-dev set to manually installed. 2021-05-17T17:08:00.9944247Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-17T17:08:00.9945414Z zlib1g-dev is already the newest version (1:1.2.11.dfsg-2ubuntu1.2). 2021-05-17T17:08:00.9946415Z pandoc is already the newest version (2.7.3-1). 2021-05-17T17:08:00.9947271Z The following additional packages will be installed: 2021-05-17T17:08:00.9948385Z libbibutils6 libghc-pandoc-citeproc-data 2021-05-17T17:08:00.9949352Z Suggested packages: 2021-05-17T17:08:00.9950624Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-17T17:08:01.0444067Z The following NEW packages will be installed: 2021-05-17T17:08:01.0454875Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-17T17:08:01.0459918Z pandoc-citeproc 2021-05-17T17:08:01.0709738Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:08:01.0710754Z Need to get 13.7 MB of archives. 2021-05-17T17:08:01.0711461Z After this operation, 109 MB of additional disk space will be used. 2021-05-17T17:08:01.0713261Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-17T17:08:01.0976103Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-17T17:08:01.1141951Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-17T17:08:01.1179390Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-17T17:08:02.8234578Z Fetched 13.7 MB in 1s (10.4 MB/s) 2021-05-17T17:08:02.8570228Z Selecting previously unselected package libbibutils6. 2021-05-17T17:08:02.8665294Z (Reading database ... 2021-05-17T17:08:02.8665898Z (Reading database ... 5% 2021-05-17T17:08:02.8666436Z (Reading database ... 10% 2021-05-17T17:08:02.8667679Z (Reading database ... 15% 2021-05-17T17:08:02.8668197Z (Reading database ... 20% 2021-05-17T17:08:02.8668679Z (Reading database ... 25% 2021-05-17T17:08:02.8669161Z (Reading database ... 30% 2021-05-17T17:08:02.8669631Z (Reading database ... 35% 2021-05-17T17:08:02.8670121Z (Reading database ... 40% 2021-05-17T17:08:02.8670589Z (Reading database ... 45% 2021-05-17T17:08:02.8671412Z (Reading database ... 50% 2021-05-17T17:08:02.8715927Z (Reading database ... 55% 2021-05-17T17:08:02.8776820Z (Reading database ... 60% 2021-05-17T17:08:02.8833574Z (Reading database ... 65% 2021-05-17T17:08:02.9063798Z (Reading database ... 70% 2021-05-17T17:08:02.9102934Z (Reading database ... 75% 2021-05-17T17:08:02.9422539Z (Reading database ... 80% 2021-05-17T17:08:02.9552822Z (Reading database ... 85% 2021-05-17T17:08:03.0038021Z (Reading database ... 90% 2021-05-17T17:08:03.0138892Z (Reading database ... 95% 2021-05-17T17:08:03.0139639Z (Reading database ... 100% 2021-05-17T17:08:03.0140531Z (Reading database ... 285139 files and directories currently installed.) 2021-05-17T17:08:03.0299098Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ... 2021-05-17T17:08:03.0317022Z Unpacking libbibutils6 (6.2-1) ... 2021-05-17T17:08:03.1023699Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-17T17:08:03.1297161Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-17T17:08:03.1306366Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T17:08:03.1944368Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-17T17:08:03.2206492Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-17T17:08:03.2218854Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T17:08:03.2583632Z Selecting previously unselected package pandoc-citeproc. 2021-05-17T17:08:03.2828446Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-17T17:08:03.2842988Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T17:08:03.2876798Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-17T17:08:04.6286553Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T17:08:04.6310186Z Setting up libbibutils6 (6.2-1) ... 2021-05-17T17:08:04.6329876Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T17:08:04.6350136Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T17:08:04.6376060Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:08:08.0737661Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:08:10.2234587Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-17T17:08:10.2235303Z remotes::install_github("ropensci/tic") 2021-05-17T17:08:10.2235955Z remotes::install_github("muschellij2/ghtravis") 2021-05-17T17:08:10.2236633Z remotes::install_github("muschellij2/aghast") 2021-05-17T17:08:10.2237250Z remotes::install_cran("covr") 2021-05-17T17:08:10.2244108Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:08:10.2244514Z env: 2021-05-17T17:08:10.2244990Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:08:10.2245476Z TIC_DEPLOY_KEY: 2021-05-17T17:08:10.2246254Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:08:10.2247872Z GITHUB_PAT: *** 2021-05-17T17:08:10.2248762Z COVERALLS_TOKEN: *** 2021-05-17T17:08:10.2249262Z continue-on-error: true 2021-05-17T17:08:10.2249731Z VDIFFR_RUN_TESTS: 2021-05-17T17:08:10.2250203Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:08:10.2250681Z TZ: UTC 2021-05-17T17:08:10.2251102Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:08:10.2251517Z NOT_CRAN: true 2021-05-17T17:08:10.2251870Z ##[endgroup] 2021-05-17T17:08:10.4137268Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:08:11.0077670Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-17T17:08:29.3711146Z rlang (NA -> 0.4.11) [CRAN] 2021-05-17T17:08:29.3712532Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-17T17:08:29.3714034Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-17T17:08:29.3714922Z sys (NA -> 3.4 ) [CRAN] 2021-05-17T17:08:29.3715823Z askpass (NA -> 1.1 ) [CRAN] 2021-05-17T17:08:29.3716735Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-17T17:08:29.3717621Z mime (NA -> 0.10 ) [CRAN] 2021-05-17T17:08:29.3718486Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-17T17:08:29.3719393Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-17T17:08:29.3720290Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-17T17:08:29.3721165Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-17T17:08:29.3722084Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-17T17:08:29.3722956Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-17T17:08:29.3723822Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-17T17:08:29.3724728Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-17T17:08:29.3725660Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-17T17:08:29.3726587Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-17T17:08:29.3727470Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-17T17:08:29.3728339Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-17T17:08:29.3729233Z whisker (NA -> 0.4 ) [CRAN] 2021-05-17T17:08:29.3730146Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-17T17:08:29.3731032Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-17T17:08:29.3731937Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-17T17:08:29.3732840Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-17T17:08:29.3734463Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-17T17:08:29.3735112Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-17T17:08:29.3735762Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-17T17:08:29.3736413Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-17T17:08:29.3737082Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-17T17:08:29.3737744Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-17T17:08:29.3738409Z git2r (NA -> 0.28.0) [CRAN] 2021-05-17T17:08:29.3838687Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-17T17:08:29.3848980Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:08:29.3849752Z (as ‘lib’ is unspecified) 2021-05-17T17:08:43.8383706Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-17T17:08:44.2251350Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-17T17:08:44.2507649Z ================================================== 2021-05-17T17:08:44.2508531Z downloaded 839 KB 2021-05-17T17:08:44.2509304Z 2021-05-17T17:08:44.2547694Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-17T17:08:44.4701271Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-17T17:08:44.5811104Z ================================================== 2021-05-17T17:08:44.5811738Z downloaded 258 KB 2021-05-17T17:08:44.5813366Z 2021-05-17T17:08:44.5857257Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-17T17:08:44.7588949Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-17T17:08:44.7693476Z ================================================== 2021-05-17T17:08:44.7694316Z downloaded 97 KB 2021-05-17T17:08:44.7694898Z 2021-05-17T17:08:44.7736496Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-17T17:08:45.1608671Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-17T17:08:45.1610293Z ================================================== 2021-05-17T17:08:45.1611037Z downloaded 19 KB 2021-05-17T17:08:45.1611562Z 2021-05-17T17:08:45.1645723Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-17T17:08:45.3386647Z Content type 'application/x-tar' length 5688 bytes 2021-05-17T17:08:45.3388147Z ================================================== 2021-05-17T17:08:45.3389187Z downloaded 5688 bytes 2021-05-17T17:08:45.3389739Z 2021-05-17T17:08:45.3424418Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-17T17:08:45.7495523Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-17T17:08:45.7817210Z ================================================== 2021-05-17T17:08:45.7819464Z downloaded 1.3 MB 2021-05-17T17:08:45.7821410Z 2021-05-17T17:08:45.7855245Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-17T17:08:46.0626520Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-17T17:08:46.0627985Z ================================================== 2021-05-17T17:08:46.0628866Z downloaded 12 KB 2021-05-17T17:08:46.0629193Z 2021-05-17T17:08:46.0667765Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-17T17:08:46.3590013Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-17T17:08:46.3842486Z ================================================== 2021-05-17T17:08:46.3843598Z downloaded 779 KB 2021-05-17T17:08:46.3844086Z 2021-05-17T17:08:46.3880909Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-17T17:08:46.6709091Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-17T17:08:46.6906143Z ================================================== 2021-05-17T17:08:46.6906726Z downloaded 412 KB 2021-05-17T17:08:46.6907037Z 2021-05-17T17:08:46.6946301Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-17T17:08:47.2012376Z Content type 'application/x-tar' length 3475 bytes 2021-05-17T17:08:47.2013830Z ================================================== 2021-05-17T17:08:47.2014600Z downloaded 3475 bytes 2021-05-17T17:08:47.2015135Z 2021-05-17T17:08:47.2057600Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-17T17:08:47.4771756Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-17T17:08:47.4896431Z ================================================== 2021-05-17T17:08:47.4897047Z downloaded 156 KB 2021-05-17T17:08:47.4897375Z 2021-05-17T17:08:47.4943319Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-17T17:08:47.8906749Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-17T17:08:47.8979677Z ================================================== 2021-05-17T17:08:47.8980513Z downloaded 60 KB 2021-05-17T17:08:47.8981217Z 2021-05-17T17:08:47.9026061Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-17T17:08:48.0786547Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-17T17:08:48.0904055Z ================================================== 2021-05-17T17:08:48.0904697Z downloaded 154 KB 2021-05-17T17:08:48.0905011Z 2021-05-17T17:08:48.0946489Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-17T17:08:49.1378942Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-17T17:08:49.1482363Z ================================================== 2021-05-17T17:08:49.1483556Z downloaded 110 KB 2021-05-17T17:08:49.1484174Z 2021-05-17T17:08:49.1525640Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-17T17:08:49.4412925Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-17T17:08:49.4471678Z ================================================== 2021-05-17T17:08:49.4472285Z downloaded 107 KB 2021-05-17T17:08:49.4472568Z 2021-05-17T17:08:49.4512158Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-17T17:08:51.2794662Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-17T17:08:51.2931390Z ================================================== 2021-05-17T17:08:51.2932099Z downloaded 225 KB 2021-05-17T17:08:51.2932395Z 2021-05-17T17:08:51.2972283Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-17T17:08:51.8029317Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-17T17:08:51.8030810Z ================================================== 2021-05-17T17:08:51.8031625Z downloaded 43 KB 2021-05-17T17:08:51.8032173Z 2021-05-17T17:08:51.8068606Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-17T17:08:52.1943240Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-17T17:08:52.2015892Z ================================================== 2021-05-17T17:08:52.2016419Z downloaded 90 KB 2021-05-17T17:08:52.2016706Z 2021-05-17T17:08:52.2058936Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-17T17:08:52.4784337Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-17T17:08:52.4858650Z ================================================== 2021-05-17T17:08:52.4859672Z downloaded 92 KB 2021-05-17T17:08:52.4860150Z 2021-05-17T17:08:52.4896068Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-17T17:08:52.7333451Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-17T17:08:52.7357749Z ================================================== 2021-05-17T17:08:52.7358648Z downloaded 28 KB 2021-05-17T17:08:52.7359209Z 2021-05-17T17:08:52.7396118Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-17T17:08:53.7951383Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-17T17:08:53.7952147Z ================================================== 2021-05-17T17:08:53.7952645Z downloaded 12 KB 2021-05-17T17:08:53.7952963Z 2021-05-17T17:08:53.7993216Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-17T17:08:54.3050637Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-17T17:08:54.3242357Z ================================================== 2021-05-17T17:08:54.3243554Z downloaded 364 KB 2021-05-17T17:08:54.3244113Z 2021-05-17T17:08:54.3285933Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-17T17:08:54.7218648Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-17T17:08:54.7282902Z ================================================== 2021-05-17T17:08:54.7283890Z downloaded 81 KB 2021-05-17T17:08:54.7284434Z 2021-05-17T17:08:54.7322242Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-17T17:08:55.1789034Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-17T17:08:55.1853466Z ================================================== 2021-05-17T17:08:55.1854062Z downloaded 44 KB 2021-05-17T17:08:55.1854389Z 2021-05-17T17:08:55.1899930Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-17T17:08:55.5016086Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-17T17:08:55.5077431Z ================================================== 2021-05-17T17:08:55.5077997Z downloaded 64 KB 2021-05-17T17:08:55.5078348Z 2021-05-17T17:08:55.5118256Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-17T17:08:56.0180950Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-17T17:08:56.0444000Z ================================================== 2021-05-17T17:08:56.0444612Z downloaded 781 KB 2021-05-17T17:08:56.0444886Z 2021-05-17T17:08:56.0490132Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-17T17:08:56.5916558Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-17T17:08:56.5917420Z ================================================== 2021-05-17T17:08:56.5917916Z downloaded 20 KB 2021-05-17T17:08:56.5918238Z 2021-05-17T17:08:56.5962904Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-17T17:08:56.9800186Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-17T17:08:56.9802668Z ================================================== 2021-05-17T17:08:56.9803585Z downloaded 24 KB 2021-05-17T17:08:56.9803947Z 2021-05-17T17:08:56.9846949Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-17T17:08:57.3363031Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-17T17:08:57.3543680Z ================================================== 2021-05-17T17:08:57.3544831Z downloaded 297 KB 2021-05-17T17:08:57.3545366Z 2021-05-17T17:08:57.3582973Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-17T17:08:58.8689147Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-17T17:08:58.8689985Z ================================================== 2021-05-17T17:08:58.8690480Z downloaded 17 KB 2021-05-17T17:08:58.8690799Z 2021-05-17T17:08:58.8733334Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-17T17:08:59.3793519Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-17T17:08:59.4086583Z ================================================== 2021-05-17T17:08:59.4087772Z downloaded 1.2 MB 2021-05-17T17:08:59.4088351Z 2021-05-17T17:08:59.9194487Z * installing *source* package ‘rlang’ ... 2021-05-17T17:08:59.9324939Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-17T17:08:59.9326715Z ** using staged installation 2021-05-17T17:08:59.9519940Z ** libs 2021-05-17T17:08:59.9585240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-17T17:09:00.0540147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-17T17:09:00.3680383Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-17T17:09:02.6578973Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-17T17:09:03.6271237Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:09:03.6664491Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:03.7102900Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-17T17:09:03.7125495Z ** R 2021-05-17T17:09:03.7572363Z ** inst 2021-05-17T17:09:03.7581763Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:07.2271682Z ** help 2021-05-17T17:09:07.9484621Z *** installing help indices 2021-05-17T17:09:08.2372474Z *** copying figures 2021-05-17T17:09:08.2377150Z ** building package indices 2021-05-17T17:09:08.7164288Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:08.9193003Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:09.0148297Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:09.2829865Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:09.2865979Z * DONE (rlang) 2021-05-17T17:09:09.5498892Z * installing *source* package ‘magrittr’ ... 2021-05-17T17:09:09.5526143Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:09.5527330Z ** using staged installation 2021-05-17T17:09:09.5657219Z ** libs 2021-05-17T17:09:09.5707386Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-17T17:09:09.6929194Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:09:09.7471340Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:09.7702930Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-17T17:09:09.7712791Z ** R 2021-05-17T17:09:09.7752638Z ** inst 2021-05-17T17:09:09.7767691Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:10.0696260Z ** help 2021-05-17T17:09:10.1109593Z *** installing help indices 2021-05-17T17:09:10.1409980Z *** copying figures 2021-05-17T17:09:10.1412500Z ** building package indices 2021-05-17T17:09:10.3501844Z ** installing vignettes 2021-05-17T17:09:10.3553429Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:10.5378050Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:10.5556134Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:10.7325053Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:10.7332538Z * DONE (magrittr) 2021-05-17T17:09:10.9754517Z * installing *source* package ‘glue’ ... 2021-05-17T17:09:10.9774140Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:10.9775349Z ** using staged installation 2021-05-17T17:09:10.9926927Z ** libs 2021-05-17T17:09:10.9977262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-17T17:09:11.1120676Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:11.1565289Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-17T17:09:11.2384762Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:11.2617198Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-17T17:09:11.2630220Z ** R 2021-05-17T17:09:11.2679288Z ** inst 2021-05-17T17:09:11.2690774Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:11.7443091Z ** help 2021-05-17T17:09:11.7733966Z *** installing help indices 2021-05-17T17:09:11.8043291Z *** copying figures 2021-05-17T17:09:11.8045594Z ** building package indices 2021-05-17T17:09:12.0046879Z ** installing vignettes 2021-05-17T17:09:12.0107325Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:12.2384351Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:12.2566733Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:12.4832508Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:12.4841114Z * DONE (glue) 2021-05-17T17:09:12.7050193Z * installing *source* package ‘sys’ ... 2021-05-17T17:09:12.7062436Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:12.7063538Z ** using staged installation 2021-05-17T17:09:12.7263980Z ** libs 2021-05-17T17:09:12.7312323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-17T17:09:12.9117412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:12.9579154Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:12.9822820Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-17T17:09:12.9826890Z ** R 2021-05-17T17:09:12.9861921Z ** inst 2021-05-17T17:09:12.9870131Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:13.2694006Z ** help 2021-05-17T17:09:13.2890528Z *** installing help indices 2021-05-17T17:09:13.3083191Z ** building package indices 2021-05-17T17:09:13.5041189Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:13.6847619Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:13.7026945Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:13.8784136Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:13.8790156Z * DONE (sys) 2021-05-17T17:09:14.0831487Z * installing *source* package ‘mime’ ... 2021-05-17T17:09:14.0841434Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:14.0843703Z ** using staged installation 2021-05-17T17:09:14.0974486Z ** libs 2021-05-17T17:09:14.1027886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:14.1479812Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-17T17:09:14.2035765Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:14.2189220Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-17T17:09:14.2204608Z ** R 2021-05-17T17:09:14.2258867Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:14.5553865Z ** help 2021-05-17T17:09:14.5769235Z *** installing help indices 2021-05-17T17:09:14.5927989Z ** building package indices 2021-05-17T17:09:14.7863064Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:14.9677247Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:14.9856807Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:15.1662193Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:15.1668969Z * DONE (mime) 2021-05-17T17:09:15.5238413Z * installing *source* package ‘curl’ ... 2021-05-17T17:09:15.5317002Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:15.5319745Z ** using staged installation 2021-05-17T17:09:15.5403681Z Found pkg-config cflags and libs! 2021-05-17T17:09:15.6249719Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-17T17:09:15.6250857Z Using PKG_LIBS=-lcurl 2021-05-17T17:09:15.6745250Z ** libs 2021-05-17T17:09:15.6800064Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-17T17:09:15.6829121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-17T17:09:15.7581927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-17T17:09:15.8813066Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-17T17:09:15.9669703Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-17T17:09:16.0238083Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-17T17:09:16.1280588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-17T17:09:16.1998240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-17T17:09:16.2544223Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-17T17:09:16.5785253Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-17T17:09:16.6179441Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:16.6744555Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-17T17:09:16.7404432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-17T17:09:16.9118258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-17T17:09:16.9659585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-17T17:09:17.0212786Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T17:09:17.0648916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T17:09:17.1123650Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-17T17:09:17.1685649Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:09:17.2899976Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:09:17.3579542Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-17T17:09:17.3789008Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T17:09:17.4310797Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:17.4622827Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-17T17:09:17.4637635Z ** R 2021-05-17T17:09:17.4755424Z ** inst 2021-05-17T17:09:17.4790143Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:17.9923232Z ** help 2021-05-17T17:09:18.0397206Z *** installing help indices 2021-05-17T17:09:18.0735910Z ** building package indices 2021-05-17T17:09:18.2849768Z ** installing vignettes 2021-05-17T17:09:18.2923085Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:18.4875760Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:18.5131653Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:18.7105855Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:18.7115360Z * DONE (curl) 2021-05-17T17:09:19.0360130Z * installing *source* package ‘jsonlite’ ... 2021-05-17T17:09:19.0414967Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:19.0416244Z ** using staged installation 2021-05-17T17:09:19.0556247Z ** libs 2021-05-17T17:09:19.0609441Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:09:19.1282667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-17T17:09:19.1853354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-17T17:09:19.2483000Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-17T17:09:19.3574636Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-17T17:09:19.4264443Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-17T17:09:19.4751936Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-17T17:09:19.5240838Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-17T17:09:19.5786734Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-17T17:09:19.6293308Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-17T17:09:19.7567773Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-17T17:09:19.8240096Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-17T17:09:19.9052332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-17T17:09:19.9760055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-17T17:09:20.0437641Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-17T17:09:20.1001379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-17T17:09:20.1557461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-17T17:09:20.2016433Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-17T17:09:20.2692865Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-17T17:09:20.3211480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-17T17:09:20.3711108Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-17T17:09:20.4324042Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-17T17:09:20.4634948Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-17T17:09:20.5111771Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-17T17:09:20.6062777Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-17T17:09:20.8406248Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-17T17:09:21.0960047Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-17T17:09:21.2629886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-17T17:09:21.3998911Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-17T17:09:21.4079482Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:21.4423714Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-17T17:09:21.4425050Z ** R 2021-05-17T17:09:21.4581955Z ** inst 2021-05-17T17:09:21.4599912Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:22.5113966Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-17T17:09:22.5116021Z ** help 2021-05-17T17:09:22.5423447Z *** installing help indices 2021-05-17T17:09:22.5689946Z ** building package indices 2021-05-17T17:09:22.7766286Z ** installing vignettes 2021-05-17T17:09:22.7836883Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:22.9866556Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:23.0101107Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:23.2222153Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:23.2223419Z * DONE (jsonlite) 2021-05-17T17:09:23.4320936Z * installing *source* package ‘ini’ ... 2021-05-17T17:09:23.4329974Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:23.4331976Z ** using staged installation 2021-05-17T17:09:23.4440960Z ** R 2021-05-17T17:09:23.4467397Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:23.6901675Z ** help 2021-05-17T17:09:23.7019250Z *** installing help indices 2021-05-17T17:09:23.7254943Z ** building package indices 2021-05-17T17:09:23.9162718Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:24.0939645Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:24.2725765Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:24.2731366Z * DONE (ini) 2021-05-17T17:09:24.5118971Z * installing *source* package ‘gitcreds’ ... 2021-05-17T17:09:24.5137169Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:24.5138672Z ** using staged installation 2021-05-17T17:09:24.5248593Z ** R 2021-05-17T17:09:24.5306231Z ** inst 2021-05-17T17:09:24.5317842Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:25.0211382Z ** help 2021-05-17T17:09:25.0468465Z *** installing help indices 2021-05-17T17:09:25.0704283Z ** building package indices 2021-05-17T17:09:25.2701853Z ** installing vignettes 2021-05-17T17:09:25.2721591Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:25.4541138Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:25.6335434Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:25.6343430Z * DONE (gitcreds) 2021-05-17T17:09:25.8824136Z * installing *source* package ‘zip’ ... 2021-05-17T17:09:25.8849675Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:25.8850917Z ** using staged installation 2021-05-17T17:09:25.8953775Z ** libs 2021-05-17T17:09:25.9006423Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-17T17:09:28.6024235Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-17T17:09:31.2458466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:31.2914413Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-17T17:09:33.7080782Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-17T17:09:33.8018083Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-17T17:09:33.9301686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-17T17:09:33.9935057Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:34.0208956Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-17T17:09:34.0262482Z ** R 2021-05-17T17:09:34.0302791Z ** inst 2021-05-17T17:09:34.0313499Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:34.3652651Z ** help 2021-05-17T17:09:34.3858696Z *** installing help indices 2021-05-17T17:09:34.4101116Z ** building package indices 2021-05-17T17:09:34.6092848Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:34.7948342Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:34.8127834Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:34.9933615Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:34.9941034Z * DONE (zip) 2021-05-17T17:09:35.2899073Z * installing *source* package ‘rstudioapi’ ... 2021-05-17T17:09:35.2938425Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:35.2939707Z ** using staged installation 2021-05-17T17:09:35.3063447Z ** R 2021-05-17T17:09:35.3163602Z ** inst 2021-05-17T17:09:35.3182382Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:35.8436753Z ** help 2021-05-17T17:09:36.0095040Z *** installing help indices 2021-05-17T17:09:36.1278836Z *** copying figures 2021-05-17T17:09:36.1281489Z ** building package indices 2021-05-17T17:09:36.4261763Z ** installing vignettes 2021-05-17T17:09:36.4309560Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:36.6093600Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:36.7958631Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:36.7968630Z * DONE (rstudioapi) 2021-05-17T17:09:37.0226140Z * installing *source* package ‘fastmap’ ... 2021-05-17T17:09:37.0241543Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:37.0242754Z ** using staged installation 2021-05-17T17:09:37.0423710Z ** libs 2021-05-17T17:09:37.0476011Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-17T17:09:39.0873110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:39.1339310Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:39.2022909Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-17T17:09:39.2035614Z ** R 2021-05-17T17:09:39.2085625Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:39.6349933Z ** help 2021-05-17T17:09:39.6522349Z *** installing help indices 2021-05-17T17:09:39.6706893Z ** building package indices 2021-05-17T17:09:39.8661909Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:40.0472987Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:40.0659656Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:40.2461279Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:40.2468713Z * DONE (fastmap) 2021-05-17T17:09:40.4951271Z * installing *source* package ‘yaml’ ... 2021-05-17T17:09:40.4975754Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:40.4977563Z ** using staged installation 2021-05-17T17:09:40.5073421Z ** libs 2021-05-17T17:09:40.5122853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-17T17:09:40.8360622Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-17T17:09:40.9453745Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-17T17:09:41.8575005Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-17T17:09:42.0159878Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-17T17:09:42.1441377Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-17T17:09:42.4934635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-17T17:09:42.7749321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-17T17:09:42.8780539Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-17T17:09:43.2841264Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-17T17:09:43.3892301Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-17T17:09:44.6742873Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T17:09:44.7348439Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:44.7659270Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-17T17:09:44.7680147Z ** R 2021-05-17T17:09:44.7707931Z ** inst 2021-05-17T17:09:44.7721073Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:45.0231581Z ** help 2021-05-17T17:09:45.0431108Z *** installing help indices 2021-05-17T17:09:45.0679468Z ** building package indices 2021-05-17T17:09:45.2685451Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:45.4514732Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:45.4703704Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:45.6475775Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:45.6482409Z * DONE (yaml) 2021-05-17T17:09:45.9093812Z * installing *source* package ‘withr’ ... 2021-05-17T17:09:45.9120220Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:45.9121503Z ** using staged installation 2021-05-17T17:09:45.9277328Z ** R 2021-05-17T17:09:45.9361017Z ** inst 2021-05-17T17:09:45.9370264Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:46.5741590Z ** help 2021-05-17T17:09:46.6505415Z *** installing help indices 2021-05-17T17:09:46.7072938Z *** copying figures 2021-05-17T17:09:46.7075824Z ** building package indices 2021-05-17T17:09:46.9406245Z ** installing vignettes 2021-05-17T17:09:46.9473104Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:47.1283919Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:47.3166418Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:47.3175450Z * DONE (withr) 2021-05-17T17:09:47.5533928Z * installing *source* package ‘whisker’ ... 2021-05-17T17:09:47.5550920Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:47.5552132Z ** using staged installation 2021-05-17T17:09:47.5646208Z ** R 2021-05-17T17:09:47.5686883Z ** inst 2021-05-17T17:09:47.5705943Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:47.9678585Z ** help 2021-05-17T17:09:47.9898995Z *** installing help indices 2021-05-17T17:09:48.0125979Z ** building package indices 2021-05-17T17:09:48.2129796Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:48.3916439Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:48.5686421Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:48.5695514Z * DONE (whisker) 2021-05-17T17:09:48.7862648Z * installing *source* package ‘rappdirs’ ... 2021-05-17T17:09:48.7873740Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:48.7874833Z ** using staged installation 2021-05-17T17:09:48.8097604Z ** libs 2021-05-17T17:09:48.8146751Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:09:48.8599497Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-17T17:09:48.9058322Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:09:48.9210555Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-17T17:09:48.9223608Z ** R 2021-05-17T17:09:48.9264472Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:49.2277652Z ** help 2021-05-17T17:09:49.2513356Z *** installing help indices 2021-05-17T17:09:49.2724296Z ** building package indices 2021-05-17T17:09:49.4712612Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:49.6514468Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:09:49.6691253Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:49.8480595Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:49.8487156Z * DONE (rappdirs) 2021-05-17T17:09:50.3206951Z * installing *source* package ‘fs’ ... 2021-05-17T17:09:50.3340923Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-17T17:09:50.3343680Z ** using staged installation 2021-05-17T17:09:50.3503558Z ** libs 2021-05-17T17:09:50.3565076Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-17T17:09:50.9131296Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-17T17:09:51.3253762Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-17T17:09:51.7098563Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-17T17:09:51.7899949Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-17T17:09:52.0842779Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-17T17:09:52.3796454Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-17T17:09:52.4660385Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-17T17:09:52.8843295Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-17T17:09:53.1627386Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-17T17:09:53.2604693Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-17T17:09:53.5606240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-17T17:09:53.6841807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-17T17:09:53.7267207Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-17T17:09:53.7587512Z (cd libuv-1.38.1 \ 2021-05-17T17:09:53.7589705Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-17T17:09:58.7090768Z make --directory=libuv-1.38.1 \ 2021-05-17T17:09:58.7091883Z HAVE_DTRACE=0 2021-05-17T17:09:58.7189319Z make[1]: Entering directory '/tmp/RtmpAtevk4/R.INSTALL7915f399dd3/fs/src/libuv-1.38.1' 2021-05-17T17:09:58.7288572Z CC src/libuv_la-fs-poll.lo 2021-05-17T17:09:59.3419438Z CC src/libuv_la-idna.lo 2021-05-17T17:09:59.9695458Z CC src/libuv_la-inet.lo 2021-05-17T17:10:00.6101142Z CC src/libuv_la-random.lo 2021-05-17T17:10:01.1356781Z CC src/libuv_la-strscpy.lo 2021-05-17T17:10:01.6235957Z CC src/libuv_la-threadpool.lo 2021-05-17T17:10:02.2717568Z CC src/libuv_la-timer.lo 2021-05-17T17:10:02.8940356Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-17T17:10:03.4262168Z CC src/libuv_la-uv-common.lo 2021-05-17T17:10:04.5033766Z CC src/libuv_la-version.lo 2021-05-17T17:10:04.9910899Z CC src/unix/libuv_la-async.lo 2021-05-17T17:10:05.6145916Z CC src/unix/libuv_la-core.lo 2021-05-17T17:10:06.7621207Z CC src/unix/libuv_la-dl.lo 2021-05-17T17:10:07.2786354Z CC src/unix/libuv_la-fs.lo 2021-05-17T17:10:08.7711361Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-17T17:10:09.3674648Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-17T17:10:09.8978866Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-17T17:10:10.4983739Z CC src/unix/libuv_la-loop.lo 2021-05-17T17:10:11.0775713Z CC src/unix/libuv_la-pipe.lo 2021-05-17T17:10:11.7185285Z CC src/unix/libuv_la-poll.lo 2021-05-17T17:10:12.2796162Z CC src/unix/libuv_la-process.lo 2021-05-17T17:10:13.0441060Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-17T17:10:13.5836546Z CC src/unix/libuv_la-signal.lo 2021-05-17T17:10:14.4733871Z CC src/unix/libuv_la-stream.lo 2021-05-17T17:10:15.5250555Z CC src/unix/libuv_la-tcp.lo 2021-05-17T17:10:16.1870665Z CC src/unix/libuv_la-thread.lo 2021-05-17T17:10:16.9205768Z CC src/unix/libuv_la-tty.lo 2021-05-17T17:10:17.5287842Z CC src/unix/libuv_la-udp.lo 2021-05-17T17:10:18.5543502Z CC src/unix/libuv_la-linux-core.lo 2021-05-17T17:10:19.6131657Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-17T17:10:20.4313060Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-17T17:10:20.8978996Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-17T17:10:21.4179553Z CC src/unix/libuv_la-proctitle.lo 2021-05-17T17:10:21.9696282Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-17T17:10:22.4789724Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-17T17:10:23.0164339Z CCLD libuv.la 2021-05-17T17:10:23.2151534Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-17T17:10:23.2480065Z make[1]: Leaving directory '/tmp/RtmpAtevk4/R.INSTALL7915f399dd3/fs/src/libuv-1.38.1' 2021-05-17T17:10:23.2499037Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:10:23.3463480Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-17T17:10:23.3468293Z ** R 2021-05-17T17:10:23.3570281Z ** inst 2021-05-17T17:10:23.3581689Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:24.4033207Z ** help 2021-05-17T17:10:24.4736364Z *** installing help indices 2021-05-17T17:10:24.5262180Z ** building package indices 2021-05-17T17:10:24.7621694Z ** installing vignettes 2021-05-17T17:10:24.7705087Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:25.0074162Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:10:25.0267141Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:25.2700022Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:25.2713213Z * DONE (fs) 2021-05-17T17:10:25.5073290Z * installing *source* package ‘clipr’ ... 2021-05-17T17:10:25.5086302Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:25.5087300Z ** using staged installation 2021-05-17T17:10:25.5300559Z ** R 2021-05-17T17:10:25.5339769Z ** inst 2021-05-17T17:10:25.5350107Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:25.8581183Z ** help 2021-05-17T17:10:25.8790315Z *** installing help indices 2021-05-17T17:10:25.8999092Z ** building package indices 2021-05-17T17:10:26.0981759Z ** installing vignettes 2021-05-17T17:10:26.1016948Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:26.2829843Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:26.4650395Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:26.4656971Z * DONE (clipr) 2021-05-17T17:10:27.2038175Z * installing *source* package ‘git2r’ ... 2021-05-17T17:10:27.2277797Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:27.2279480Z ** using staged installation 2021-05-17T17:10:27.4059529Z checking build system type... x86_64-unknown-linux-gnu 2021-05-17T17:10:27.4062273Z checking host system type... x86_64-unknown-linux-gnu 2021-05-17T17:10:27.4076146Z checking for gcc... gcc 2021-05-17T17:10:27.4663599Z checking whether the C compiler works... yes 2021-05-17T17:10:27.4665303Z checking for C compiler default output file name... a.out 2021-05-17T17:10:27.5037838Z checking for suffix of executables... 2021-05-17T17:10:27.5449428Z checking whether we are cross compiling... no 2021-05-17T17:10:27.5688938Z checking for suffix of object files... o 2021-05-17T17:10:27.5900161Z checking whether we are using the GNU C compiler... yes 2021-05-17T17:10:27.6113682Z checking whether gcc accepts -g... yes 2021-05-17T17:10:27.6475863Z checking for gcc option to accept ISO C89... none needed 2021-05-17T17:10:27.6483756Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T17:10:27.6498320Z checking pkg-config is at least version 0.9.0... yes 2021-05-17T17:10:27.6572001Z Found pkg-config cflags and libs! 2021-05-17T17:10:27.7479079Z checking whether the libgit2 version will work in git2r... yes 2021-05-17T17:10:27.8691701Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-17T17:10:27.9900119Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-17T17:10:28.1112844Z checking whether the libgit2 function git_error_last is available... yes 2021-05-17T17:10:28.2142451Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-17T17:10:28.2144588Z ----- Results of the git2r package configure ----- 2021-05-17T17:10:28.2145238Z 2021-05-17T17:10:28.2146337Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-17T17:10:28.2147405Z PKG_LIBS: -lgit2 2021-05-17T17:10:28.2147871Z 2021-05-17T17:10:28.2148693Z -------------------------------------------------- 2021-05-17T17:10:28.2332884Z configure: creating ./config.status 2021-05-17T17:10:28.3085736Z config.status: creating src/Makevars 2021-05-17T17:10:28.3632965Z ** libs 2021-05-17T17:10:28.3694611Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-17T17:10:28.4335874Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-17T17:10:28.9520422Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-17T17:10:28.9523995Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-17T17:10:28.9526712Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-17T17:10:28.9529401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-17T17:10:29.0636844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-17T17:10:29.1533613Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-17T17:10:29.2409540Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-17T17:10:29.3872057Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-17T17:10:29.5393331Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-17T17:10:29.6278883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-17T17:10:29.8705452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-17T17:10:29.9347106Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-17T17:10:30.0166163Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-17T17:10:30.1011081Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-17T17:10:30.1800061Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-17T17:10:30.3489537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-17T17:10:30.4747053Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-17T17:10:30.5550312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-17T17:10:30.7111731Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-17T17:10:30.7745887Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-17T17:10:30.8551604Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-17T17:10:30.9471288Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-17T17:10:31.0306679Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-17T17:10:31.2018678Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-17T17:10:31.3530082Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-17T17:10:31.4336083Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-17T17:10:31.5118440Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-17T17:10:31.6852908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-17T17:10:31.7632979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-17T17:10:31.8763397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-17T17:10:32.0289104Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-17T17:10:32.1513523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-17T17:10:32.2157420Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-17T17:10:32.3279676Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:10:32.3688707Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-17T17:10:32.3709130Z ** R 2021-05-17T17:10:32.3904418Z ** inst 2021-05-17T17:10:32.3914851Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:33.3631715Z ** help 2021-05-17T17:10:33.6039900Z *** installing help indices 2021-05-17T17:10:33.8010045Z ** building package indices 2021-05-17T17:10:34.1380852Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:34.3329591Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:10:34.3511450Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:34.5533246Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:34.5544698Z * DONE (git2r) 2021-05-17T17:10:34.7747268Z * installing *source* package ‘askpass’ ... 2021-05-17T17:10:34.7756404Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:34.7757488Z ** using staged installation 2021-05-17T17:10:34.7894032Z ** libs 2021-05-17T17:10:34.7945477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-17T17:10:34.8447734Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:10:34.8661828Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-17T17:10:34.8675760Z ** R 2021-05-17T17:10:34.8705873Z ** inst 2021-05-17T17:10:34.8714073Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:35.1284490Z ** help 2021-05-17T17:10:35.1466702Z *** installing help indices 2021-05-17T17:10:35.1612902Z ** building package indices 2021-05-17T17:10:35.3490278Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:35.5307799Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:10:35.5488844Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:35.7245049Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:35.7251174Z * DONE (askpass) 2021-05-17T17:10:36.0633296Z * installing *source* package ‘cli’ ... 2021-05-17T17:10:36.0690829Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:36.0692247Z ** using staged installation 2021-05-17T17:10:36.0885417Z ** R 2021-05-17T17:10:36.1156086Z ** inst 2021-05-17T17:10:36.1169238Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:38.7852937Z ** help 2021-05-17T17:10:38.9764472Z *** installing help indices 2021-05-17T17:10:39.1123277Z *** copying figures 2021-05-17T17:10:39.1124786Z ** building package indices 2021-05-17T17:10:39.4199538Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:39.6449837Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:39.9181642Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:39.9211211Z * DONE (cli) 2021-05-17T17:10:40.2472476Z * installing *source* package ‘purrr’ ... 2021-05-17T17:10:40.2527884Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:40.2531345Z ** using staged installation 2021-05-17T17:10:40.2687499Z ** libs 2021-05-17T17:10:40.2741456Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-17T17:10:40.3120048Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T17:10:40.4022344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T17:10:40.4902957Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-17T17:10:40.5996806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:10:40.6448488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-17T17:10:40.7649074Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-17T17:10:40.8970949Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-17T17:10:40.9837867Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:10:41.0383933Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:10:41.0662788Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-17T17:10:41.0664007Z ** R 2021-05-17T17:10:41.0819331Z ** inst 2021-05-17T17:10:41.0829975Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:42.3138518Z ** help 2021-05-17T17:10:42.4857999Z *** installing help indices 2021-05-17T17:10:42.5906535Z *** copying figures 2021-05-17T17:10:43.4554084Z ** building package indices 2021-05-17T17:10:43.4555547Z ** installing vignettes 2021-05-17T17:10:43.4556672Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:43.4557788Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:10:43.4558888Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:43.4560366Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:43.4561269Z * DONE (purrr) 2021-05-17T17:10:43.6001383Z * installing *source* package ‘lifecycle’ ... 2021-05-17T17:10:43.6027086Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:43.6028324Z ** using staged installation 2021-05-17T17:10:43.6198044Z ** R 2021-05-17T17:10:43.6253545Z ** inst 2021-05-17T17:10:43.6270517Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:44.0501650Z ** help 2021-05-17T17:10:44.0825781Z *** installing help indices 2021-05-17T17:10:44.1074027Z *** copying figures 2021-05-17T17:10:44.1078959Z ** building package indices 2021-05-17T17:10:44.3096282Z ** installing vignettes 2021-05-17T17:10:44.3155728Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:44.5165928Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:44.7180812Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:44.7189855Z * DONE (lifecycle) 2021-05-17T17:10:44.9375518Z * installing *source* package ‘cachem’ ... 2021-05-17T17:10:44.9386905Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:44.9388016Z ** using staged installation 2021-05-17T17:10:44.9520958Z ** libs 2021-05-17T17:10:44.9573531Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-17T17:10:45.0096176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:10:45.0563858Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:10:45.0787779Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-17T17:10:45.0803368Z ** R 2021-05-17T17:10:45.0938438Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:45.6407974Z ** help 2021-05-17T17:10:45.6644902Z *** installing help indices 2021-05-17T17:10:45.6844601Z ** building package indices 2021-05-17T17:10:45.8840090Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:46.0867429Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:10:46.1041417Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:46.3093516Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:46.3100859Z * DONE (cachem) 2021-05-17T17:10:46.7683370Z * installing *source* package ‘openssl’ ... 2021-05-17T17:10:46.7808670Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:46.7810739Z ** using staged installation 2021-05-17T17:10:46.8012161Z Found pkg-config cflags and libs! 2021-05-17T17:10:46.8846988Z Using PKG_CFLAGS= 2021-05-17T17:10:47.2323763Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-17T17:10:47.2489795Z ** libs 2021-05-17T17:10:47.2554641Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T17:10:47.2590025Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T17:10:47.3441374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:10:47.4249909Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-17T17:10:47.5276153Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-17T17:10:47.6875519Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-17T17:10:47.7549486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-17T17:10:47.8532061Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-17T17:10:47.9718892Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-17T17:10:48.0269103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T17:10:48.1263826Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-17T17:10:48.1935602Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-17T17:10:48.2988791Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-17T17:10:48.4316767Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-17T17:10:48.5232551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-17T17:10:48.7107792Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-17T17:10:48.7656493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-17T17:10:48.8097083Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-17T17:10:48.9427231Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-17T17:10:49.0854671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-17T17:10:49.2120142Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-17T17:10:49.2605937Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-17T17:10:49.3612822Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-17T17:10:49.4828197Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T17:10:49.6291364Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-17T17:10:49.7475397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-17T17:10:49.8768169Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-17T17:10:50.0040397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-17T17:10:50.0742261Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-17T17:10:50.2516090Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T17:10:50.2575193Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:10:50.3181690Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-17T17:10:50.3199787Z ** R 2021-05-17T17:10:50.3306413Z ** inst 2021-05-17T17:10:50.3360819Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:51.3123956Z ** help 2021-05-17T17:10:51.3659637Z *** installing help indices 2021-05-17T17:10:51.4042084Z ** building package indices 2021-05-17T17:10:51.6280232Z ** installing vignettes 2021-05-17T17:10:51.6432108Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:51.8379026Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:10:51.8566163Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:52.0640981Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:52.0655693Z * DONE (openssl) 2021-05-17T17:10:52.2872135Z * installing *source* package ‘memoise’ ... 2021-05-17T17:10:52.2883854Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:52.2884933Z ** using staged installation 2021-05-17T17:10:52.3037649Z ** R 2021-05-17T17:10:52.3149002Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:52.7223922Z ** help 2021-05-17T17:10:52.7475466Z *** installing help indices 2021-05-17T17:10:52.7721947Z ** building package indices 2021-05-17T17:10:52.9767097Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:53.1814630Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:53.3862547Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:53.3868386Z * DONE (memoise) 2021-05-17T17:10:53.7096680Z * installing *source* package ‘httr’ ... 2021-05-17T17:10:53.7145131Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:53.7146403Z ** using staged installation 2021-05-17T17:10:53.7304364Z ** R 2021-05-17T17:10:53.7477346Z ** demo 2021-05-17T17:10:53.7488929Z ** inst 2021-05-17T17:10:53.7504747Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:56.4691996Z ** help 2021-05-17T17:10:56.6261706Z *** installing help indices 2021-05-17T17:10:56.7331487Z ** building package indices 2021-05-17T17:10:57.0221866Z ** installing vignettes 2021-05-17T17:10:57.0270154Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:57.2119042Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:57.4430778Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:57.4462517Z * DONE (httr) 2021-05-17T17:10:57.6850863Z * installing *source* package ‘credentials’ ... 2021-05-17T17:10:57.6868700Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:57.6869964Z ** using staged installation 2021-05-17T17:10:57.7012963Z ** R 2021-05-17T17:10:57.7057599Z ** inst 2021-05-17T17:10:57.7069301Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:58.1481771Z ** help 2021-05-17T17:10:58.1670639Z *** installing help indices 2021-05-17T17:10:58.1876568Z ** building package indices 2021-05-17T17:10:58.3824390Z ** installing vignettes 2021-05-17T17:10:58.3883083Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:58.6579502Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:58.9023889Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:58.9031422Z * DONE (credentials) 2021-05-17T17:10:59.1471279Z * installing *source* package ‘gh’ ... 2021-05-17T17:10:59.1489234Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:59.1490495Z ** using staged installation 2021-05-17T17:10:59.1638429Z ** R 2021-05-17T17:10:59.1718301Z ** inst 2021-05-17T17:10:59.1727800Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:00.2342300Z ** help 2021-05-17T17:11:00.2629669Z *** installing help indices 2021-05-17T17:11:00.2940559Z ** building package indices 2021-05-17T17:11:00.4981838Z ** installing vignettes 2021-05-17T17:11:00.4987927Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:00.7506005Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:01.0170557Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:01.0183761Z * DONE (gh) 2021-05-17T17:11:01.2831702Z * installing *source* package ‘gert’ ... 2021-05-17T17:11:01.2858665Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:01.2859750Z ** using staged installation 2021-05-17T17:11:01.2952379Z Found pkg-config cflags and libs! 2021-05-17T17:11:01.3813591Z Using PKG_CFLAGS= 2021-05-17T17:11:01.3814946Z Using PKG_LIBS=-lgit2 2021-05-17T17:11:01.4186381Z Configuration OK! 2021-05-17T17:11:01.4344044Z ** libs 2021-05-17T17:11:01.4396483Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-17T17:11:01.4423699Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-17T17:11:01.6460841Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-17T17:11:01.8673769Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-17T17:11:02.0860530Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-17T17:11:02.1706594Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-17T17:11:02.2443123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-17T17:11:02.3894977Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:02.4528676Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-17T17:11:02.5556239Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-17T17:11:02.6675340Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-17T17:11:02.7518176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-17T17:11:02.8636445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-17T17:11:02.9457979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:11:03.0650838Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:11:03.1413035Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:03.1743519Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-17T17:11:03.1745190Z ** R 2021-05-17T17:11:03.1821322Z ** inst 2021-05-17T17:11:03.1830157Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:03.9214749Z ** help 2021-05-17T17:11:03.9813429Z *** installing help indices 2021-05-17T17:11:04.0258427Z ** building package indices 2021-05-17T17:11:04.2488110Z ** installing vignettes 2021-05-17T17:11:04.2583856Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:04.4899708Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:04.5082954Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:04.7408286Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:04.7418388Z * DONE (gert) 2021-05-17T17:11:05.1431713Z * installing *source* package ‘usethis’ ... 2021-05-17T17:11:05.1511336Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:05.1513026Z ** using staged installation 2021-05-17T17:11:05.1760842Z ** R 2021-05-17T17:11:05.2098938Z ** inst 2021-05-17T17:11:05.2134171Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:08.1191112Z ** help 2021-05-17T17:11:08.3169065Z *** installing help indices 2021-05-17T17:11:08.4532366Z *** copying figures 2021-05-17T17:11:08.4538514Z ** building package indices 2021-05-17T17:11:08.7670479Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:09.0651391Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:09.4049335Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:09.4081186Z * DONE (usethis) 2021-05-17T17:11:09.4193451Z 2021-05-17T17:11:09.4194407Z The downloaded source packages are in 2021-05-17T17:11:09.4195636Z ‘/tmp/RtmpHheZom/downloaded_packages’ 2021-05-17T17:11:09.4196309Z Running `R CMD build`... 2021-05-17T17:11:11.5842331Z * checking for file ‘/tmp/RtmpHheZom/remotes7262301c662f/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-17T17:11:11.5844091Z * preparing ‘tic’: 2021-05-17T17:11:11.5845244Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:11:11.5846411Z * installing the package to process help pages 2021-05-17T17:11:11.5847796Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:11:11.5848920Z * checking for empty or unneeded directories 2021-05-17T17:11:11.5850039Z Removed empty directory ‘tic/.circleci’ 2021-05-17T17:11:11.5851164Z Removed empty directory ‘tic/pkgdown’ 2021-05-17T17:11:11.5852179Z * building ‘tic_0.10.0.tar.gz’ 2021-05-17T17:11:11.5856669Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:11:11.5857549Z (as ‘lib’ is unspecified) 2021-05-17T17:11:11.9271953Z * installing *source* package ‘tic’ ... 2021-05-17T17:11:11.9303547Z ** using staged installation 2021-05-17T17:11:11.9539685Z ** R 2021-05-17T17:11:11.9730100Z ** inst 2021-05-17T17:11:11.9764791Z ** preparing package for lazy loading 2021-05-17T17:11:12.3400751Z ** help 2021-05-17T17:11:12.4972916Z *** installing help indices 2021-05-17T17:11:12.5980056Z *** copying figures 2021-05-17T17:11:12.5985680Z ** building package indices 2021-05-17T17:11:12.8741768Z ** installing vignettes 2021-05-17T17:11:12.8767677Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:13.1433630Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:13.4584739Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:13.4615689Z * DONE (tic) 2021-05-17T17:11:13.4751234Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:11:13.6649903Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-17T17:11:14.5013698Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-17T17:11:14.5014836Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-17T17:11:14.5015659Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-17T17:11:14.5016504Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-17T17:11:14.5017799Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-17T17:11:14.5018641Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-17T17:11:14.5019477Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-17T17:11:14.5020308Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-17T17:11:14.5021366Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-17T17:11:14.5022200Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-17T17:11:14.5023002Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-17T17:11:14.5023812Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-17T17:11:14.5024662Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-17T17:11:14.5027292Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-17T17:11:14.5029375Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-17T17:11:14.5030227Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-17T17:11:14.5031087Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-17T17:11:14.5031924Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-17T17:11:14.5032731Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-17T17:11:14.5033535Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-17T17:11:14.5034336Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-17T17:11:14.5035126Z xfun (NA -> 0.23 ) [CRAN] 2021-05-17T17:11:14.5035951Z markdown (NA -> 1.1 ) [CRAN] 2021-05-17T17:11:14.5036782Z highr (NA -> 0.9 ) [CRAN] 2021-05-17T17:11:14.5037598Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-17T17:11:14.5038422Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-17T17:11:14.5039237Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-17T17:11:14.5040045Z knitr (NA -> 1.33 ) [CRAN] 2021-05-17T17:11:14.5040879Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-17T17:11:14.5041720Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-17T17:11:14.5042527Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-17T17:11:14.5043369Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-17T17:11:14.5044259Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-17T17:11:14.5045127Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-17T17:11:14.5045961Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-17T17:11:14.5046812Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-17T17:11:14.5047663Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-17T17:11:14.5048719Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-17T17:11:14.5049691Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-17T17:11:14.5051630Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:11:14.5052487Z (as ‘lib’ is unspecified) 2021-05-17T17:11:28.8672404Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-17T17:11:29.5401352Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-17T17:11:29.5556437Z ================================================== 2021-05-17T17:11:29.5557612Z downloaded 232 KB 2021-05-17T17:11:29.5558174Z 2021-05-17T17:11:29.5592959Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-17T17:11:29.8262023Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-17T17:11:29.8507292Z ================================================== 2021-05-17T17:11:29.8508463Z downloaded 766 KB 2021-05-17T17:11:29.8509006Z 2021-05-17T17:11:29.8543260Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-17T17:11:30.0651666Z Content type 'application/x-tar' length 6108 bytes 2021-05-17T17:11:30.0654287Z ================================================== 2021-05-17T17:11:30.0655283Z downloaded 6108 bytes 2021-05-17T17:11:30.0656156Z 2021-05-17T17:11:30.0699316Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-17T17:11:30.4554877Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-17T17:11:30.4856113Z ================================================== 2021-05-17T17:11:30.4857001Z downloaded 1.1 MB 2021-05-17T17:11:30.4857533Z 2021-05-17T17:11:30.4896365Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-17T17:11:30.8729103Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-17T17:11:30.9018034Z ================================================== 2021-05-17T17:11:30.9018604Z downloaded 673 KB 2021-05-17T17:11:30.9018890Z 2021-05-17T17:11:30.9057055Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-17T17:11:31.3377550Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-17T17:11:31.9688688Z ================================================== 2021-05-17T17:11:31.9689685Z downloaded 13 KB 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-05-17T17:11:35.2718302Z Content type 'application/x-tar' length 6100 bytes 2021-05-17T17:11:35.2719768Z ================================================== 2021-05-17T17:11:35.2720787Z downloaded 6100 bytes 2021-05-17T17:11:35.2721167Z 2021-05-17T17:11:35.2765712Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-05-17T17:11:35.5297573Z Content type 'binary/octet-stream' length 60723 bytes (59 KB) 2021-05-17T17:11:35.5349275Z ================================================== 2021-05-17T17:11:35.5349815Z downloaded 59 KB 2021-05-17T17:11:35.5350097Z 2021-05-17T17:11:35.5397856Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-17T17:11:36.0465075Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-17T17:11:36.0466038Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz' 2021-05-17T17:11:36.9860180Z Content type 'binary/octet-stream' length 74923 bytes (73 KB) 2021-05-17T17:11:36.9920269Z ================================================== 2021-05-17T17:11:36.9921300Z downloaded 73 KB 2021-05-17T17:11:36.9921852Z 2021-05-17T17:11:36.9957860Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz' 2021-05-17T17:11:37.2219363Z Content type 'binary/octet-stream' length 12096 bytes (11 KB) 2021-05-17T17:11:37.2221086Z ================================================== 2021-05-17T17:11:37.2221848Z downloaded 11 KB 2021-05-17T17:11:37.2222379Z 2021-05-17T17:11:37.2256401Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-17T17:11:37.3931671Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-17T17:11:37.4095851Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/highr_0.9.tar.gz' 2021-05-17T17:11:38.3108974Z Content type 'binary/octet-stream' length 15361 bytes (15 KB) 2021-05-17T17:11:38.3110506Z ================================================== 2021-05-17T17:11:38.3111238Z downloaded 15 KB 2021-05-17T17:11:38.3111782Z 2021-05-17T17:11:38.3144976Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringr_1.4.0.tar.gz' 2021-05-17T17:11:38.9176197Z Content type 'application/x-tar' length 135526 bytes (132 KB) 2021-05-17T17:11:38.9285775Z ================================================== 2021-05-17T17:11:38.9286382Z downloaded 132 KB 2021-05-17T17:11:38.9286676Z 2021-05-17T17:11:38.9329407Z trying URL 'https://cloud.r-project.org/src/contrib/stringi_1.6.2.tar.gz' 2021-05-17T17:11:39.3367413Z Content type 'application/x-gzip' length 7575370 bytes (7.2 MB) 2021-05-17T17:11:39.4869178Z ================================================== 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2021-05-17T17:11:44.9576584Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-17T17:11:45.3665585Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-17T17:11:45.3816216Z ================================================== 2021-05-17T17:11:45.3816771Z downloaded 249 KB 2021-05-17T17:11:45.3817223Z 2021-05-17T17:11:45.3855992Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-17T17:11:45.6636291Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-17T17:11:45.6689594Z ================================================== 2021-05-17T17:11:45.6690134Z downloaded 43 KB 2021-05-17T17:11:45.6690429Z 2021-05-17T17:11:45.6730235Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-17T17:11:45.8667179Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-17T17:11:45.8864706Z ================================================== 2021-05-17T17:11:45.8865856Z downloaded 361 KB 2021-05-17T17:11:45.8866400Z 2021-05-17T17:11:46.2054050Z * installing *source* package ‘utf8’ ... 2021-05-17T17:11:46.2115632Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:46.2116938Z ** using staged installation 2021-05-17T17:11:46.2248928Z ** libs 2021-05-17T17:11:46.2304358Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-17T17:11:46.2963188Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-17T17:11:46.4353662Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-17T17:11:46.4961951Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:46.5376531Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-17T17:11:46.5993274Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-17T17:11:46.7573688Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-17T17:11:46.8196558Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-17T17:11:46.9469393Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-17T17:11:47.0264876Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-17T17:11:47.1151386Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-17T17:11:47.1832601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-17T17:11:47.2417674Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-17T17:11:47.3023492Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-17T17:11:47.3569744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-17T17:11:47.4117457Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-17T17:11:47.4792354Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-17T17:11:47.5369723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-17T17:11:47.5762493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-17T17:11:47.6394589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-17T17:11:47.6845682Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-17T17:11:47.8826790Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-17T17:11:48.1741732Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-17T17:11:48.3441908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-17T17:11:48.4124968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-17T17:11:48.4730179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-17T17:11:48.5441778Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-17T17:11:48.6146978Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-17T17:11:48.6221848Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:48.6542765Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-17T17:11:48.6559574Z ** R 2021-05-17T17:11:48.6645122Z ** inst 2021-05-17T17:11:48.6653817Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:49.1221769Z ** help 2021-05-17T17:11:49.1506500Z *** installing help indices 2021-05-17T17:11:49.1752570Z ** building package indices 2021-05-17T17:11:49.3763173Z ** installing vignettes 2021-05-17T17:11:49.3816044Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:49.5627902Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:49.5812772Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:49.7615492Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:49.7624265Z * DONE (utf8) 2021-05-17T17:11:49.9760730Z * installing *source* package ‘pkgconfig’ ... 2021-05-17T17:11:49.9770649Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:49.9771779Z ** using staged installation 2021-05-17T17:11:49.9885590Z ** R 2021-05-17T17:11:49.9912762Z ** inst 2021-05-17T17:11:49.9921750Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:50.2301698Z ** help 2021-05-17T17:11:50.2494949Z *** installing help indices 2021-05-17T17:11:50.2673045Z ** building package indices 2021-05-17T17:11:50.4633359Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:50.6425105Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:50.8213724Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:50.8219411Z * DONE (pkgconfig) 2021-05-17T17:11:51.1021819Z * installing *source* package ‘fansi’ ... 2021-05-17T17:11:51.1056676Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:51.1057916Z ** using staged installation 2021-05-17T17:11:51.1189504Z ** libs 2021-05-17T17:11:51.1276931Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-17T17:11:51.1672776Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-17T17:11:51.2283162Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:51.2750800Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-17T17:11:51.3464104Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-17T17:11:51.7844843Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-17T17:11:51.8225237Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-17T17:11:52.1736149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-17T17:11:52.3100332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-17T17:11:52.3564825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-17T17:11:52.4775759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-17T17:11:52.7153293Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-17T17:11:52.8154583Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-17T17:11:52.8707726Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T17:11:52.9286811Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:11:53.0901710Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-17T17:11:53.3929988Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:53.4222733Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-17T17:11:53.4234542Z ** R 2021-05-17T17:11:53.4332012Z ** inst 2021-05-17T17:11:53.4341576Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:54.0562364Z ** help 2021-05-17T17:11:54.1204057Z *** installing help indices 2021-05-17T17:11:54.1586739Z ** building package indices 2021-05-17T17:11:54.3864381Z ** installing vignettes 2021-05-17T17:11:54.3924212Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:54.5779597Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:54.5963660Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:54.7834608Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:54.7844130Z * DONE (fansi) 2021-05-17T17:11:55.2291513Z * installing *source* package ‘diffobj’ ... 2021-05-17T17:11:55.2393368Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:55.2396098Z ** using staged installation 2021-05-17T17:11:55.2547989Z ** libs 2021-05-17T17:11:55.2592944Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-17T17:11:55.4588709Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-17T17:11:55.5195900Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:55.5664800Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:55.5902713Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-17T17:11:55.5906020Z ** R 2021-05-17T17:11:55.6308227Z ** inst 2021-05-17T17:11:55.6325509Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:02.2613864Z ** help 2021-05-17T17:12:02.4650627Z *** installing help indices 2021-05-17T17:12:02.9767004Z ** building package indices 2021-05-17T17:12:02.9776534Z ** installing vignettes 2021-05-17T17:12:02.9777657Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:03.2326779Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:03.2502632Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:03.6737930Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:03.6815706Z * DONE (diffobj) 2021-05-17T17:12:03.9770197Z * installing *source* package ‘ps’ ... 2021-05-17T17:12:03.9809763Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:03.9810966Z ** using staged installation 2021-05-17T17:12:04.1813723Z ** libs 2021-05-17T17:12:04.1870936Z gcc -g -O2 -Wall px.c -o px 2021-05-17T17:12:04.3126537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:04.3791850Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-17T17:12:04.4449521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-17T17:12:04.5111086Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-17T17:12:04.6681692Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-17T17:12:04.7196223Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-17T17:12:04.9981881Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-17T17:12:05.1712965Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-17T17:12:05.2716353Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-17T17:12:05.4248769Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-17T17:12:05.8537742Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:05.8823790Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-17T17:12:05.8847267Z ** R 2021-05-17T17:12:05.8953231Z ** inst 2021-05-17T17:12:05.8963772Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:06.9354593Z ** help 2021-05-17T17:12:07.0786099Z *** installing help indices 2021-05-17T17:12:07.1747139Z ** building package indices 2021-05-17T17:12:07.4547697Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:07.6424988Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:07.6609124Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:07.8585308Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:07.8597609Z * DONE (ps) 2021-05-17T17:12:08.0727733Z * installing *source* package ‘praise’ ... 2021-05-17T17:12:08.0736488Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:08.0737599Z ** using staged installation 2021-05-17T17:12:08.0844305Z ** R 2021-05-17T17:12:08.0882004Z ** inst 2021-05-17T17:12:08.0890717Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:08.3221650Z ** help 2021-05-17T17:12:08.3317030Z *** installing help indices 2021-05-17T17:12:08.3546788Z ** building package indices 2021-05-17T17:12:08.5482569Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:08.7274251Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:08.9027751Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:08.9033196Z * DONE (praise) 2021-05-17T17:12:09.2302422Z * installing *source* package ‘pkgload’ ... 2021-05-17T17:12:09.2350444Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:09.2351623Z ** using staged installation 2021-05-17T17:12:09.2494654Z ** R 2021-05-17T17:12:09.2596775Z ** inst 2021-05-17T17:12:09.2603508Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:10.1289155Z ** help 2021-05-17T17:12:10.1815767Z *** installing help indices 2021-05-17T17:12:10.2272775Z ** building package indices 2021-05-17T17:12:10.4581648Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:10.9234005Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:11.3993762Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:11.4007673Z * DONE (pkgload) 2021-05-17T17:12:11.6439842Z * installing *source* package ‘evaluate’ ... 2021-05-17T17:12:11.6458131Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:11.6459449Z ** using staged installation 2021-05-17T17:12:11.6601449Z ** R 2021-05-17T17:12:11.6654879Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:12.1655353Z ** help 2021-05-17T17:12:12.1936944Z *** installing help indices 2021-05-17T17:12:12.2258679Z ** building package indices 2021-05-17T17:12:12.4323667Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:12.6129709Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:12.7986226Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:12.7993511Z * DONE (evaluate) 2021-05-17T17:12:13.0133645Z * installing *source* package ‘ellipsis’ ... 2021-05-17T17:12:13.0144794Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:13.0146956Z ** using staged installation 2021-05-17T17:12:13.0291507Z ** libs 2021-05-17T17:12:13.0340396Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-17T17:12:13.1060450Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:13.1521399Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:13.1745613Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-17T17:12:13.1760744Z ** R 2021-05-17T17:12:13.1793186Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:13.4486342Z ** help 2021-05-17T17:12:13.4737164Z *** installing help indices 2021-05-17T17:12:13.4936957Z ** building package indices 2021-05-17T17:12:13.6911616Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:13.8923952Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:13.9098273Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:14.1090969Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:14.1097315Z * DONE (ellipsis) 2021-05-17T17:12:14.3836106Z * installing *source* package ‘digest’ ... 2021-05-17T17:12:14.3871026Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:14.3874982Z ** using staged installation 2021-05-17T17:12:14.3988679Z ** libs 2021-05-17T17:12:14.4047879Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-17T17:12:14.5772259Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T17:12:14.8800900Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-17T17:12:15.5229872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-17T17:12:15.7497705Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-17T17:12:16.2819121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-17T17:12:16.3561868Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-17T17:12:16.5681410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-17T17:12:16.6252467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:16.6486283Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-17T17:12:16.7878005Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-17T17:12:16.8395220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-17T17:12:16.9115788Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-17T17:12:17.2010293Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-17T17:12:17.3134091Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-17T17:12:17.8698371Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-17T17:12:17.9820314Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-17T17:12:18.2262053Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:18.2703129Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-17T17:12:18.2711653Z ** R 2021-05-17T17:12:18.2770606Z ** demo 2021-05-17T17:12:18.2775831Z ** inst 2021-05-17T17:12:18.2793057Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:18.8215473Z ** help 2021-05-17T17:12:18.8595907Z *** installing help indices 2021-05-17T17:12:18.8862607Z ** building package indices 2021-05-17T17:12:19.0941786Z ** installing vignettes 2021-05-17T17:12:19.0945008Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:19.2798604Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:19.2982618Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:19.4826698Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:19.4837618Z * DONE (digest) 2021-05-17T17:12:19.7081823Z * installing *source* package ‘brio’ ... 2021-05-17T17:12:19.7094543Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:19.7095542Z ** using staged installation 2021-05-17T17:12:19.7283686Z ** libs 2021-05-17T17:12:19.7334719Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-17T17:12:19.7710938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-17T17:12:19.8197177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:19.8644996Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-17T17:12:19.9173476Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-17T17:12:19.9701486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-17T17:12:20.0513684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-17T17:12:20.0994209Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-17T17:12:20.1569205Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:20.1822823Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-17T17:12:20.1825085Z ** R 2021-05-17T17:12:20.1858987Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:20.4238667Z ** help 2021-05-17T17:12:20.4433588Z *** installing help indices 2021-05-17T17:12:20.4632606Z ** building package indices 2021-05-17T17:12:20.6626506Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:20.8468118Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:20.8646410Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:21.0427830Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:21.0432589Z * DONE (brio) 2021-05-17T17:12:21.3366696Z * installing *source* package ‘xml2’ ... 2021-05-17T17:12:21.3406538Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:21.3407906Z ** using staged installation 2021-05-17T17:12:21.3489169Z Found pkg-config cflags and libs! 2021-05-17T17:12:21.4322936Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-17T17:12:21.4324158Z Using PKG_LIBS=-lxml2 2021-05-17T17:12:21.4824213Z ** libs 2021-05-17T17:12:21.4875014Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-17T17:12:22.0068671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:22.0538168Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-17T17:12:22.5955757Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-17T17:12:23.0148288Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-17T17:12:23.7047354Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-17T17:12:25.5380368Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-17T17:12:26.0623949Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-17T17:12:26.6333333Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-17T17:12:27.0853248Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-17T17:12:27.5065394Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:27.5987263Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-17T17:12:27.6017383Z ** R 2021-05-17T17:12:27.6126304Z ** inst 2021-05-17T17:12:27.6139636Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:28.5511298Z ** help 2021-05-17T17:12:28.6450904Z *** installing help indices 2021-05-17T17:12:28.6961556Z ** building package indices 2021-05-17T17:12:28.9306955Z ** installing vignettes 2021-05-17T17:12:28.9393589Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:29.1297707Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:29.9850327Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:29.9852161Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:12:29.9854106Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:29.9855388Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:29.9856991Z * DONE (xml2) 2021-05-17T17:12:29.9858084Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:29.9859294Z * installing *source* package ‘xfun’ ... 2021-05-17T17:12:29.9860318Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:29.9861419Z ** using staged installation 2021-05-17T17:12:29.9861950Z ** libs 2021-05-17T17:12:29.9862921Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-17T17:12:29.9863578Z ** R 2021-05-17T17:12:29.9864004Z ** inst 2021-05-17T17:12:29.9865135Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:31.2254826Z ** help 2021-05-17T17:12:31.3695341Z *** installing help indices 2021-05-17T17:12:31.4731390Z ** building package indices 2021-05-17T17:12:31.7549744Z ** installing vignettes 2021-05-17T17:12:31.7616288Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:31.9493398Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:31.9670598Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:32.1715502Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:32.1731243Z * DONE (xfun) 2021-05-17T17:12:34.6925497Z * installing *source* package ‘stringi’ ... 2021-05-17T17:12:34.8044151Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:34.8045039Z ** using staged installation 2021-05-17T17:12:34.9231273Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-17T17:12:34.9232482Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-17T17:12:35.0854564Z checking for endianness... little 2021-05-17T17:12:35.2483611Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-17T17:12:35.4085943Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-17T17:12:35.4090333Z checking for cat... /usr/bin/cat 2021-05-17T17:12:35.6287050Z checking for local ICUDT_DIR... icu69/data 2021-05-17T17:12:35.6288236Z checking for gcc... gcc 2021-05-17T17:12:35.6876024Z checking whether the C compiler works... yes 2021-05-17T17:12:35.6877544Z checking for C compiler default output file name... a.out 2021-05-17T17:12:35.7254099Z checking for suffix of executables... 2021-05-17T17:12:35.7721494Z checking whether we are cross compiling... no 2021-05-17T17:12:35.7967242Z checking for suffix of object files... o 2021-05-17T17:12:35.8190789Z checking whether we are using the GNU C compiler... yes 2021-05-17T17:12:35.8404835Z checking whether gcc accepts -g... yes 2021-05-17T17:12:35.8762972Z checking for gcc option to accept ISO C89... none needed 2021-05-17T17:12:35.8970263Z checking how to run the C preprocessor... gcc -E 2021-05-17T17:12:35.9197333Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-17T17:12:35.9213553Z checking for egrep... /usr/bin/grep -E 2021-05-17T17:12:36.0273570Z checking for ANSI C header files... yes 2021-05-17T17:12:36.0565634Z checking for sys/types.h... yes 2021-05-17T17:12:36.0905813Z checking for sys/stat.h... yes 2021-05-17T17:12:36.1241113Z checking for stdlib.h... yes 2021-05-17T17:12:36.1595990Z checking for string.h... yes 2021-05-17T17:12:36.1950776Z checking for memory.h... yes 2021-05-17T17:12:36.2307953Z checking for strings.h... yes 2021-05-17T17:12:36.2675400Z checking for inttypes.h... yes 2021-05-17T17:12:36.3040663Z checking for stdint.h... yes 2021-05-17T17:12:36.3432994Z checking for unistd.h... yes 2021-05-17T17:12:36.4000390Z checking elf.h usability... yes 2021-05-17T17:12:36.4109920Z checking elf.h presence... yes 2021-05-17T17:12:36.4110999Z checking for elf.h... yes 2021-05-17T17:12:36.4645998Z checking whether we are using the GNU C++ compiler... yes 2021-05-17T17:12:36.4869264Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-17T17:12:36.8010768Z checking whether the C++ compiler supports the long long type... yes 2021-05-17T17:12:36.8267509Z checking whether the compiler implements namespaces... yes 2021-05-17T17:12:36.9559396Z checking whether the compiler supports Standard Template Library... yes 2021-05-17T17:12:37.4765319Z checking whether std::map is available... yes 2021-05-17T17:12:37.4787427Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T17:12:37.4840988Z checking with pkg-config for the system ICU4C... 66.1 2021-05-17T17:12:37.4865471Z checking for ICU4C >= 55... yes 2021-05-17T17:12:37.4931635Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-17T17:12:37.8113434Z checking whether an ICU4C-based project can be built... yes 2021-05-17T17:12:37.8712078Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-17T17:12:38.1460984Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-17T17:12:38.8803776Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-17T17:12:39.4801582Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-17T17:12:39.5155300Z configure: creating ./config.status 2021-05-17T17:12:39.5971633Z config.status: creating src/Makevars 2021-05-17T17:12:39.6141203Z config.status: creating src/uconfig_local.h 2021-05-17T17:12:39.6310333Z config.status: creating src/install.libs.R 2021-05-17T17:12:39.6476887Z 2021-05-17T17:12:39.6478167Z *** stringi configure summary: 2021-05-17T17:12:39.6479053Z ICU_FOUND=1 2021-05-17T17:12:39.6479565Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-17T17:12:39.6480725Z STRINGI_CFLAGS= -fpic 2021-05-17T17:12:39.6481551Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-17T17:12:39.6482276Z STRINGI_CXXFLAGS= -fpic 2021-05-17T17:12:39.6483076Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-17T17:12:39.6483879Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-17T17:12:39.6484260Z 2021-05-17T17:12:39.6484677Z *** Compiler settings used: 2021-05-17T17:12:39.6485109Z CC=gcc 2021-05-17T17:12:39.6485618Z LD=g++ -std=gnu++14 2021-05-17T17:12:39.6486176Z CFLAGS=-g -O2 -fpic 2021-05-17T17:12:39.6486920Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-17T17:12:39.6487820Z CXX=g++ -std=gnu++11 2021-05-17T17:12:39.6488408Z CXXFLAGS=-g -O2 -fpic 2021-05-17T17:12:39.6488824Z LDFLAGS= 2021-05-17T17:12:39.6489220Z LIBS= 2021-05-17T17:12:39.6489463Z 2021-05-17T17:12:39.6855826Z ** libs 2021-05-17T17:12:39.6944329Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-17T17:12:40.3619686Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-17T17:12:40.9887799Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-17T17:12:41.6405325Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-17T17:12:42.3687388Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-17T17:12:42.8791829Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-17T17:12:43.7217192Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-17T17:12:44.2786830Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-17T17:12:44.8731879Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-17T17:12:45.4281472Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-17T17:12:46.0683991Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-17T17:12:46.7111455Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-17T17:12:47.4423935Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-17T17:12:48.1130656Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-17T17:12:48.7205792Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-17T17:12:49.6764047Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-17T17:12:51.2537047Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-17T17:12:51.9325536Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-17T17:12:52.5961266Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-17T17:12:53.1198515Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-17T17:12:53.6421528Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-17T17:12:54.5688264Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-17T17:12:55.2432357Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-17T17:12:55.8652280Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-17T17:12:56.6558571Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-17T17:12:57.4294247Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-17T17:12:58.0020000Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-17T17:12:58.6388335Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-17T17:12:59.2771356Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-17T17:13:00.1358793Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-17T17:13:00.9752009Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-17T17:13:01.9646719Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-17T17:13:02.7798812Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-17T17:13:03.5077865Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-17T17:13:04.2664728Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-17T17:13:04.9341307Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-17T17:13:05.5787812Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-17T17:13:06.2152857Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-17T17:13:06.8726999Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-17T17:13:07.6870810Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-17T17:13:08.4942123Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-17T17:13:09.3680405Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-17T17:13:10.2057293Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-17T17:13:10.9482042Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-17T17:13:11.6949588Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-17T17:13:12.2455781Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-17T17:13:12.9544969Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-17T17:13:13.6616602Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-17T17:13:14.3724961Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-17T17:13:14.9522730Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-17T17:13:15.5385271Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-17T17:13:16.2848233Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-17T17:13:17.0262661Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-17T17:13:17.8508315Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-17T17:13:18.6367990Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-17T17:13:19.3963470Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-17T17:13:20.0666372Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-17T17:13:20.0826973Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-17T17:13:20.9172169Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-17T17:13:21.4904709Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-17T17:13:22.0758308Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-17T17:13:22.8647880Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-17T17:13:23.6287973Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-17T17:13:24.5612381Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-17T17:13:25.2528623Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-17T17:13:26.0502504Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-17T17:13:26.7229779Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-17T17:13:28.2942224Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-17T17:13:28.9346365Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-17T17:13:29.5127015Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-17T17:13:30.3339451Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-17T17:13:30.8725997Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-17T17:13:31.4582415Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-17T17:13:32.2458550Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-17T17:13:32.9551885Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-17T17:13:33.9077615Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-17T17:13:34.5853116Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-17T17:13:35.2975334Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-17T17:13:35.9256890Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-17T17:13:36.5132317Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-17T17:13:37.1250304Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-17T17:13:37.6555602Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-17T17:13:38.2310378Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-17T17:13:39.5788672Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:39.8143496Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-17T17:13:39.8880322Z ** R 2021-05-17T17:13:39.9174130Z ** inst 2021-05-17T17:13:39.9183537Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:41.0423728Z ** help 2021-05-17T17:13:41.5064034Z *** installing help indices 2021-05-17T17:13:41.7153209Z ** building package indices 2021-05-17T17:13:42.1234189Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:42.3130597Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:42.3351726Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:42.5462332Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:42.5463100Z * DONE (stringi) 2021-05-17T17:13:43.5123506Z * installing *source* package ‘Rcpp’ ... 2021-05-17T17:13:43.5481276Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:43.5482136Z ** using staged installation 2021-05-17T17:13:43.5596674Z ** libs 2021-05-17T17:13:43.5644941Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-17T17:13:46.6925725Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-17T17:14:02.4046174Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-17T17:14:02.6028009Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-17T17:14:05.8919962Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-17T17:14:12.2597956Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-17T17:14:15.1514120Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:15.3368043Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-17T17:14:15.3490132Z ** R 2021-05-17T17:14:15.3626128Z ** inst 2021-05-17T17:14:15.4026291Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:17.1990004Z ** help 2021-05-17T17:14:17.2958335Z *** installing help indices 2021-05-17T17:14:17.3605892Z ** building package indices 2021-05-17T17:14:17.6101735Z ** installing vignettes 2021-05-17T17:14:17.6141993Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:17.8898733Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:17.9136482Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:18.2173238Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:18.2263238Z * DONE (Rcpp) 2021-05-17T17:14:18.5300358Z * installing *source* package ‘commonmark’ ... 2021-05-17T17:14:18.5337931Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:18.5339254Z ** using staged installation 2021-05-17T17:14:18.5456039Z ** libs 2021-05-17T17:14:18.5508474Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-17T17:14:18.5543368Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-17T17:14:18.6010209Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:14:18.6420576Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-17T17:14:18.7058571Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-17T17:14:18.7550049Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-17T17:14:19.0278431Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-17T17:14:19.1147130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-17T17:14:19.5466535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-17T17:14:20.2569436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-17T17:14:21.9392003Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-17T17:14:25.1423601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-17T17:14:25.2657115Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-17T17:14:25.3138715Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-17T17:14:25.4131343Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-17T17:14:25.4989807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-17T17:14:25.5800467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-17T17:14:25.7655733Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-17T17:14:25.9553341Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-17T17:14:26.0774527Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-17T17:14:26.1211494Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-17T17:14:26.1655509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-17T17:14:26.2677372Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-17T17:14:26.2990301Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-17T17:14:26.3600732Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-17T17:14:26.4036294Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-17T17:14:26.4427701Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-17T17:14:26.4921179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-17T17:14:26.5583791Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-17T17:14:26.6525518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-17T17:14:26.6974567Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-17T17:14:26.7705056Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-17T17:14:26.9356588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-17T17:14:26.9665600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-17T17:14:27.1023319Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-17T17:14:27.1808744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-17T17:14:27.4601943Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-17T17:14:27.5131752Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-17T17:14:27.5261459Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:27.5703000Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-17T17:14:27.5764328Z ** R 2021-05-17T17:14:27.5790425Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:27.8117517Z ** help 2021-05-17T17:14:27.8242726Z *** installing help indices 2021-05-17T17:14:27.8405871Z ** building package indices 2021-05-17T17:14:28.0318781Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:28.2151866Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:28.2351220Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:28.4156998Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:28.4162352Z * DONE (commonmark) 2021-05-17T17:14:28.6635046Z * installing *source* package ‘brew’ ... 2021-05-17T17:14:28.6636629Z ** using staged installation 2021-05-17T17:14:28.6719788Z ** R 2021-05-17T17:14:28.6747463Z ** inst 2021-05-17T17:14:28.6773824Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:29.0301640Z ** help 2021-05-17T17:14:29.0425324Z *** installing help indices 2021-05-17T17:14:29.0596567Z ** building package indices 2021-05-17T17:14:29.2535494Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:29.4357417Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:29.6161474Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:29.6169571Z * DONE (brew) 2021-05-17T17:14:29.8440448Z * installing *source* package ‘sessioninfo’ ... 2021-05-17T17:14:29.8454351Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:29.8455448Z ** using staged installation 2021-05-17T17:14:29.8636453Z ** R 2021-05-17T17:14:29.8676488Z ** inst 2021-05-17T17:14:29.8683228Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:30.3105866Z ** help 2021-05-17T17:14:30.3264632Z *** installing help indices 2021-05-17T17:14:30.3445168Z ** building package indices 2021-05-17T17:14:30.5421465Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:30.7712246Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:31.0022558Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:31.0028290Z * DONE (sessioninfo) 2021-05-17T17:14:31.2143147Z * installing *source* package ‘prettyunits’ ... 2021-05-17T17:14:31.2152751Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:31.2153882Z ** using staged installation 2021-05-17T17:14:31.2262158Z ** R 2021-05-17T17:14:31.2302521Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:31.5501720Z ** help 2021-05-17T17:14:31.5772481Z *** installing help indices 2021-05-17T17:14:31.5978664Z ** building package indices 2021-05-17T17:14:31.7978517Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:31.9783602Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:32.1606653Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:32.1613266Z * DONE (prettyunits) 2021-05-17T17:14:32.6938299Z * installing *source* package ‘vctrs’ ... 2021-05-17T17:14:32.7081594Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:32.7084503Z ** using staged installation 2021-05-17T17:14:32.7259679Z ** libs 2021-05-17T17:14:32.7331779Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-17T17:14:32.8462668Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-17T17:14:32.9299908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-17T17:14:33.0142895Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-17T17:14:33.2472138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-17T17:14:33.3596369Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-17T17:14:33.4927252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-17T17:14:33.5560117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-17T17:14:33.6596940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-17T17:14:33.7335390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-17T17:14:33.8642419Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-17T17:14:34.0575074Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-17T17:14:34.1743614Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T17:14:34.2598311Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-17T17:14:34.5017978Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-17T17:14:34.5610403Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-17T17:14:34.9338443Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-17T17:14:35.0214258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-17T17:14:35.1415581Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-17T17:14:35.2575707Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-17T17:14:35.3131940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T17:14:35.5349574Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:14:35.5943258Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-17T17:14:35.8964855Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-17T17:14:35.9686465Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-17T17:14:36.6584925Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-17T17:14:36.8050599Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-17T17:14:36.8749315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-17T17:14:36.9469047Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-17T17:14:37.1011492Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-17T17:14:37.2078737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-17T17:14:37.3312737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-17T17:14:37.4385841Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-17T17:14:37.5676092Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-17T17:14:37.8046916Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-17T17:14:37.9000435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-17T17:14:37.9795193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-17T17:14:38.0879952Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-17T17:14:38.5293732Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-17T17:14:38.8689897Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-17T17:14:39.1042548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-17T17:14:39.2672554Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-17T17:14:39.5315865Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T17:14:39.5858577Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-17T17:14:39.7778811Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-17T17:14:39.9200650Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-17T17:14:40.0220332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-17T17:14:40.3606428Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-17T17:14:40.5092192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-17T17:14:40.6339326Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-17T17:14:40.7325397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-17T17:14:40.8042834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-17T17:14:40.9217059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-17T17:14:41.0480520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-17T17:14:41.1669394Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-17T17:14:41.2648553Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-17T17:14:41.3384671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-17T17:14:41.4084391Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-17T17:14:41.4619278Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:14:42.0723450Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:14:42.1114916Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:42.1708728Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-17T17:14:42.1744030Z ** R 2021-05-17T17:14:42.2082121Z ** inst 2021-05-17T17:14:42.2102831Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:44.9973313Z ** help 2021-05-17T17:14:45.2575720Z *** installing help indices 2021-05-17T17:14:45.4597411Z *** copying figures 2021-05-17T17:14:45.4607314Z ** building package indices 2021-05-17T17:14:45.7869193Z ** installing vignettes 2021-05-17T17:14:45.8053292Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:46.0436128Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:46.0640829Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:46.3542495Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:46.3576607Z * DONE (vctrs) 2021-05-17T17:14:46.6487303Z * installing *source* package ‘processx’ ... 2021-05-17T17:14:46.6523518Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:46.6524841Z ** using staged installation 2021-05-17T17:14:46.6699544Z ** libs 2021-05-17T17:14:46.6753665Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-17T17:14:46.8095626Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-17T17:14:46.8097036Z supervisor/utils.c -o supervisor/supervisor 2021-05-17T17:14:46.9791462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:14:47.0637884Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-17T17:14:47.1558551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-17T17:14:47.2154065Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-17T17:14:47.2155351Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-17T17:14:47.2387098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:14:47.3184255Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-17T17:14:47.4188307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-17T17:14:47.7488776Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-17T17:14:47.8374744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-17T17:14:47.9498421Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-17T17:14:48.0441136Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-17T17:14:48.1203934Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-17T17:14:48.4308282Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-17T17:14:48.5282489Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-17T17:14:48.6329698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-17T17:14:48.6885669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-17T17:14:48.7587796Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:48.7866664Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-17T17:14:48.7905901Z ** R 2021-05-17T17:14:48.8039820Z ** inst 2021-05-17T17:14:48.8047327Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:50.4605908Z ** help 2021-05-17T17:14:50.5358788Z *** installing help indices 2021-05-17T17:14:50.5797097Z ** building package indices 2021-05-17T17:14:50.8059719Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:51.0035613Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:51.0298857Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:51.2485125Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:51.2503870Z * DONE (processx) 2021-05-17T17:14:51.5115907Z * installing *source* package ‘markdown’ ... 2021-05-17T17:14:51.5140533Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:51.5143304Z ** using staged installation 2021-05-17T17:14:51.5297593Z ** libs 2021-05-17T17:14:51.5348886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-17T17:14:51.5991345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-17T17:14:51.6507061Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-17T17:14:51.8175675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-17T17:14:51.9215365Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-17T17:14:51.9969321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-17T17:14:52.0375163Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-17T17:14:52.0781182Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-17T17:14:52.2863015Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-17T17:14:52.4225126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-17T17:14:53.4708569Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-17T17:14:53.5187042Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:53.5463110Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-17T17:14:53.5470518Z ** R 2021-05-17T17:14:53.5524901Z ** inst 2021-05-17T17:14:53.5544066Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:53.9925590Z ** help 2021-05-17T17:14:54.0298351Z *** installing help indices 2021-05-17T17:14:54.0565900Z ** building package indices 2021-05-17T17:14:54.2599189Z ** installing vignettes 2021-05-17T17:14:54.2656535Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:54.4543587Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:54.4726050Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:54.6618570Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:54.6629525Z * DONE (markdown) 2021-05-17T17:14:54.8836186Z * installing *source* package ‘highr’ ... 2021-05-17T17:14:54.8846789Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:54.8847879Z ** using staged installation 2021-05-17T17:14:54.8999696Z ** R 2021-05-17T17:14:54.9035836Z ** inst 2021-05-17T17:14:54.9046827Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:55.2532373Z ** help 2021-05-17T17:14:55.2661041Z *** installing help indices 2021-05-17T17:14:55.2820135Z ** building package indices 2021-05-17T17:14:55.4756638Z ** installing vignettes 2021-05-17T17:14:55.4807786Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:55.6652421Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:55.8506954Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:55.8514053Z * DONE (highr) 2021-05-17T17:14:56.1397650Z * installing *source* package ‘stringr’ ... 2021-05-17T17:14:56.1433860Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:56.1434680Z ** using staged installation 2021-05-17T17:14:56.1612405Z ** R 2021-05-17T17:14:56.1688864Z ** data 2021-05-17T17:14:56.1692635Z *** moving datasets to lazyload DB 2021-05-17T17:14:56.1870252Z ** inst 2021-05-17T17:14:56.1884347Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:56.7061773Z ** help 2021-05-17T17:14:56.7835540Z *** installing help indices 2021-05-17T17:14:56.8400111Z *** copying figures 2021-05-17T17:14:56.8401909Z ** building package indices 2021-05-17T17:14:57.0781823Z ** installing vignettes 2021-05-17T17:14:57.0836449Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:57.2807601Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:57.4796099Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:57.4805677Z * DONE (stringr) 2021-05-17T17:14:57.7006742Z * installing *source* package ‘rversions’ ... 2021-05-17T17:14:57.7018869Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:57.7021619Z ** using staged installation 2021-05-17T17:14:57.7163050Z ** R 2021-05-17T17:14:57.7196876Z ** inst 2021-05-17T17:14:57.7204249Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:58.0461608Z ** help 2021-05-17T17:14:58.0622554Z *** installing help indices 2021-05-17T17:14:58.0830210Z *** copying figures 2021-05-17T17:14:58.0833488Z ** building package indices 2021-05-17T17:14:58.2823470Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:58.4912700Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:58.6946641Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:58.6952215Z * DONE (rversions) 2021-05-17T17:14:59.1103098Z * installing *source* package ‘pillar’ ... 2021-05-17T17:14:59.1205002Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:59.1206283Z ** using staged installation 2021-05-17T17:14:59.1389708Z ** R 2021-05-17T17:14:59.1566782Z ** inst 2021-05-17T17:14:59.1601132Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:00.9655368Z ** help 2021-05-17T17:15:01.0485418Z *** installing help indices 2021-05-17T17:15:01.1108946Z *** copying figures 2021-05-17T17:15:01.1113524Z ** building package indices 2021-05-17T17:15:01.3541713Z ** installing vignettes 2021-05-17T17:15:01.3593232Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:01.6557908Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:01.9844968Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:01.9869677Z * DONE (pillar) 2021-05-17T17:15:02.2560326Z * installing *source* package ‘callr’ ... 2021-05-17T17:15:02.2588838Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:02.2590037Z ** using staged installation 2021-05-17T17:15:02.2731264Z ** R 2021-05-17T17:15:02.2865323Z ** inst 2021-05-17T17:15:02.2874234Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:05.7458782Z ** help 2021-05-17T17:15:05.8664382Z *** installing help indices 2021-05-17T17:15:05.9403877Z ** building package indices 2021-05-17T17:15:06.1958516Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:06.3977513Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:06.6593530Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:06.6627488Z * DONE (callr) 2021-05-17T17:15:07.1363231Z * installing *source* package ‘knitr’ ... 2021-05-17T17:15:07.1474970Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:07.1476539Z ** using staged installation 2021-05-17T17:15:07.1826978Z ** R 2021-05-17T17:15:07.2202303Z ** demo 2021-05-17T17:15:07.2210241Z ** inst 2021-05-17T17:15:07.2315839Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:11.7062584Z ** help 2021-05-17T17:15:11.9031220Z *** installing help indices 2021-05-17T17:15:12.0360866Z ** building package indices 2021-05-17T17:15:12.3461411Z ** installing vignettes 2021-05-17T17:15:12.3536293Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:12.5586242Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:12.8594909Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:12.8649512Z * DONE (knitr) 2021-05-17T17:15:13.0840615Z * installing *source* package ‘xopen’ ... 2021-05-17T17:15:13.0848700Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:13.0849669Z ** using staged installation 2021-05-17T17:15:13.0996940Z ** R 2021-05-17T17:15:13.1021464Z ** inst 2021-05-17T17:15:13.1028927Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:13.3530318Z ** help 2021-05-17T17:15:13.3649734Z *** installing help indices 2021-05-17T17:15:13.3896295Z ** building package indices 2021-05-17T17:15:13.5861399Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:13.7695448Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:13.9477733Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:13.9483298Z * DONE (xopen) 2021-05-17T17:15:14.3686198Z * installing *source* package ‘tibble’ ... 2021-05-17T17:15:14.3782153Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:14.3783371Z ** using staged installation 2021-05-17T17:15:14.3987930Z ** libs 2021-05-17T17:15:14.4038033Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-17T17:15:14.4500442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T17:15:14.5144746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:14.5526639Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-17T17:15:14.6485125Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:14.6710071Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-17T17:15:14.6724845Z ** R 2021-05-17T17:15:14.6882744Z ** inst 2021-05-17T17:15:14.6913380Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:16.6090363Z ** help 2021-05-17T17:15:16.6818558Z *** installing help indices 2021-05-17T17:15:16.7321848Z *** copying figures 2021-05-17T17:15:16.7326442Z ** building package indices 2021-05-17T17:15:16.9661656Z ** installing vignettes 2021-05-17T17:15:16.9736288Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:17.3341768Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:17.3518724Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:17.7258978Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:17.7281206Z * DONE (tibble) 2021-05-17T17:15:17.9819920Z * installing *source* package ‘pkgbuild’ ... 2021-05-17T17:15:17.9840949Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:17.9842141Z ** using staged installation 2021-05-17T17:15:17.9992221Z ** R 2021-05-17T17:15:18.0073530Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:19.2493167Z ** help 2021-05-17T17:15:19.2848280Z *** installing help indices 2021-05-17T17:15:19.3210848Z ** building package indices 2021-05-17T17:15:19.5358548Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:19.8024286Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:20.0822541Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:20.0839153Z * DONE (pkgbuild) 2021-05-17T17:15:20.4724021Z * installing *source* package ‘roxygen2’ ... 2021-05-17T17:15:20.4797358Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:20.4798817Z ** using staged installation 2021-05-17T17:15:20.4989738Z ** libs 2021-05-17T17:15:20.5062711Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-17T17:15:25.0297746Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-17T17:15:27.9972084Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-17T17:15:30.9782278Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-17T17:15:33.9858234Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-17T17:15:38.7196396Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-17T17:15:41.8127270Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:41.9171348Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-17T17:15:41.9217201Z ** R 2021-05-17T17:15:41.9520344Z ** inst 2021-05-17T17:15:41.9539423Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:45.8710512Z ** help 2021-05-17T17:15:45.9414785Z *** installing help indices 2021-05-17T17:15:45.9944125Z *** copying figures 2021-05-17T17:15:45.9945974Z ** building package indices 2021-05-17T17:15:46.2341830Z ** installing vignettes 2021-05-17T17:15:46.2416355Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:46.5980224Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:46.6173418Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:47.0388709Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:47.0430317Z * DONE (roxygen2) 2021-05-17T17:15:47.2667437Z * installing *source* package ‘rematch2’ ... 2021-05-17T17:15:47.2678347Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:47.2679474Z ** using staged installation 2021-05-17T17:15:47.2814541Z ** R 2021-05-17T17:15:47.2855594Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:47.7861731Z ** help 2021-05-17T17:15:47.8149387Z *** installing help indices 2021-05-17T17:15:48.5458691Z ** building package indices 2021-05-17T17:15:48.5460526Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:48.5461939Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:48.7446793Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:48.7453008Z * DONE (rematch2) 2021-05-17T17:15:49.0040230Z * installing *source* package ‘rcmdcheck’ ... 2021-05-17T17:15:49.0066383Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:49.0070275Z ** using staged installation 2021-05-17T17:15:49.0210483Z ** R 2021-05-17T17:15:49.0288429Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:50.3049645Z ** help 2021-05-17T17:15:50.3413887Z *** installing help indices 2021-05-17T17:15:50.3707178Z ** building package indices 2021-05-17T17:15:50.5840260Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:50.8709232Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:51.1718363Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:51.1732135Z * DONE (rcmdcheck) 2021-05-17T17:15:51.4214456Z * installing *source* package ‘waldo’ ... 2021-05-17T17:15:51.4231823Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:51.4232929Z ** using staged installation 2021-05-17T17:15:51.4374961Z ** R 2021-05-17T17:15:51.4433075Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:52.1661967Z ** help 2021-05-17T17:15:52.1803438Z *** installing help indices 2021-05-17T17:15:52.1984122Z *** copying figures 2021-05-17T17:15:52.1986486Z ** building package indices 2021-05-17T17:15:52.3972693Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:52.6448696Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:52.8937033Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:52.8945735Z * DONE (waldo) 2021-05-17T17:15:53.3948328Z * installing *source* package ‘testthat’ ... 2021-05-17T17:15:53.4072591Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:53.4075348Z ** using staged installation 2021-05-17T17:15:53.4292115Z ** libs 2021-05-17T17:15:53.4342031Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:53.4804401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T17:15:53.5322389Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-17T17:15:54.2924917Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-17T17:15:54.8865418Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-17T17:16:11.7767252Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:16:11.9482476Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-17T17:16:11.9595735Z ** R 2021-05-17T17:16:11.9958867Z ** inst 2021-05-17T17:16:11.9993774Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:22.2542562Z ** help 2021-05-17T17:16:22.4752839Z *** installing help indices 2021-05-17T17:16:22.6678278Z *** copying figures 2021-05-17T17:16:22.6683139Z ** building package indices 2021-05-17T17:16:22.9910324Z ** installing vignettes 2021-05-17T17:16:23.0036581Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:23.2219564Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:16:23.2464426Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:23.6988006Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:23.7071640Z * DONE (testthat) 2021-05-17T17:16:24.0785413Z * installing *source* package ‘devtools’ ... 2021-05-17T17:16:24.0844493Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-17T17:16:24.0846020Z ** using staged installation 2021-05-17T17:16:24.1132489Z ** R 2021-05-17T17:16:24.1266036Z ** inst 2021-05-17T17:16:24.1277442Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:25.9858531Z ** help 2021-05-17T17:16:26.0963078Z *** installing help indices 2021-05-17T17:16:26.1715873Z *** copying figures 2021-05-17T17:16:26.1717227Z ** building package indices 2021-05-17T17:16:26.4301709Z ** installing vignettes 2021-05-17T17:16:26.4356166Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:27.1273386Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:27.8590001Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:27.8611625Z * DONE (devtools) 2021-05-17T17:16:27.8732638Z 2021-05-17T17:16:27.8733878Z The downloaded source packages are in 2021-05-17T17:16:27.8735376Z ‘/tmp/RtmpHheZom/downloaded_packages’ 2021-05-17T17:16:27.9721641Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-17T17:16:28.5926576Z 2021-05-17T17:16:28.8898557Z 2021-05-17T17:16:28.8900781Z checking for file ‘/tmp/RtmpHheZom/remotes72621c45d0d3/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-17T17:16:28.8960465Z 2021-05-17T17:16:28.8963123Z ✔ checking for file ‘/tmp/RtmpHheZom/remotes72621c45d0d3/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-17T17:16:28.8999035Z 2021-05-17T17:16:28.9034023Z 2021-05-17T17:16:28.9035259Z ─ preparing ‘desc’: 2021-05-17T17:16:28.9035784Z 2021-05-17T17:16:28.9036274Z 2021-05-17T17:16:28.9129677Z checking DESCRIPTION meta-information ... 2021-05-17T17:16:28.9154972Z 2021-05-17T17:16:28.9157139Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:16:28.9797455Z 2021-05-17T17:16:28.9827766Z 2021-05-17T17:16:28.9830612Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:16:28.9840948Z 2021-05-17T17:16:28.9866925Z 2021-05-17T17:16:28.9869394Z ─ checking for empty or unneeded directories 2021-05-17T17:16:28.9872947Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:16:28.9900393Z 2021-05-17T17:16:28.9924920Z 2021-05-17T17:16:28.9926855Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-17T17:16:29.0965415Z 2021-05-17T17:16:29.0968715Z 2021-05-17T17:16:29.0970211Z 2021-05-17T17:16:29.1073485Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:16:29.1074535Z (as ‘lib’ is unspecified) 2021-05-17T17:16:29.4123766Z * installing *source* package ‘desc’ ... 2021-05-17T17:16:29.4152520Z ** using staged installation 2021-05-17T17:16:29.4316946Z ** R 2021-05-17T17:16:29.4444342Z ** inst 2021-05-17T17:16:29.4460060Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:31.0437172Z ** help 2021-05-17T17:16:31.1724752Z *** installing help indices 2021-05-17T17:16:31.2624495Z ** building package indices 2021-05-17T17:16:31.5401801Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:31.7297184Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:31.9466239Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:31.9482397Z * DONE (desc) 2021-05-17T17:16:32.1501746Z 2021-05-17T17:16:32.1502822Z 2021-05-17T17:16:32.1506702Z checking for file ‘/tmp/RtmpHheZom/remotes72626aa518e4/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-17T17:16:32.1507739Z 2021-05-17T17:16:32.1514320Z checking for file ‘/tmp/RtmpHheZom/remotes72626aa518e4/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-17T17:16:32.1539915Z 2021-05-17T17:16:32.1541789Z ✔ checking for file ‘/tmp/RtmpHheZom/remotes72626aa518e4/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-17T17:16:32.1654070Z 2021-05-17T17:16:32.1655038Z 2021-05-17T17:16:32.1656184Z ─ preparing ‘ghtravis’: 2021-05-17T17:16:32.1656633Z 2021-05-17T17:16:32.1657056Z 2021-05-17T17:16:32.1730791Z checking DESCRIPTION meta-information ... 2021-05-17T17:16:32.1756668Z 2021-05-17T17:16:32.1760269Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:16:32.2119591Z 2021-05-17T17:16:32.2149650Z 2021-05-17T17:16:32.2152410Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:16:32.2162844Z 2021-05-17T17:16:32.2189182Z 2021-05-17T17:16:32.2191615Z ─ checking for empty or unneeded directories 2021-05-17T17:16:32.2195032Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:16:32.2275844Z 2021-05-17T17:16:32.2300413Z 2021-05-17T17:16:32.2303970Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-17T17:16:32.2506462Z 2021-05-17T17:16:32.2509868Z 2021-05-17T17:16:32.2511402Z 2021-05-17T17:16:32.2874915Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:16:32.2876285Z (as ‘lib’ is unspecified) 2021-05-17T17:16:32.5329503Z * installing *source* package ‘ghtravis’ ... 2021-05-17T17:16:32.5331127Z ** using staged installation 2021-05-17T17:16:32.5483482Z ** R 2021-05-17T17:16:32.5570502Z ** inst 2021-05-17T17:16:32.5579521Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:33.9001998Z ** help 2021-05-17T17:16:33.9587303Z *** installing help indices 2021-05-17T17:16:34.0024555Z ** building package indices 2021-05-17T17:16:34.2346169Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:34.9375632Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:35.6545129Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:35.6555309Z * DONE (ghtravis) 2021-05-17T17:16:35.6647281Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:16:35.8333656Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-17T17:16:36.5897266Z 2021-05-17T17:16:36.5898987Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-17T17:16:36.5900875Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-17T17:16:36.5901853Z generics (NA -> 0.1.0) [CRAN] 2021-05-17T17:16:36.5902714Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-17T17:16:36.5903535Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-17T17:16:36.5904358Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-17T17:16:36.6022246Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:16:36.6023664Z (as ‘lib’ is unspecified) 2021-05-17T17:16:51.4232881Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-17T17:16:51.8058181Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-17T17:16:51.8129366Z ================================================== 2021-05-17T17:16:51.8130127Z downloaded 89 KB 2021-05-17T17:16:51.8130684Z 2021-05-17T17:16:51.8171609Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-17T17:16:52.2009932Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-17T17:16:52.2112959Z ================================================== 2021-05-17T17:16:52.2113827Z downloaded 116 KB 2021-05-17T17:16:52.2114229Z 2021-05-17T17:16:52.2151511Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-17T17:16:52.6121892Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-17T17:16:52.6325024Z ================================================== 2021-05-17T17:16:52.6326279Z downloaded 195 KB 2021-05-17T17:16:52.6326834Z 2021-05-17T17:16:52.6365714Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-17T17:16:52.8826029Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-17T17:16:52.9106697Z ================================================== 2021-05-17T17:16:52.9107284Z downloaded 932 KB 2021-05-17T17:16:52.9107570Z 2021-05-17T17:16:52.9227503Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-17T17:16:53.1966086Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-17T17:16:53.2203246Z ================================================== 2021-05-17T17:16:53.2205132Z downloaded 690 KB 2021-05-17T17:16:53.2206585Z 2021-05-17T17:16:53.4935401Z * installing *source* package ‘tidyselect’ ... 2021-05-17T17:16:53.4967417Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-17T17:16:53.4968710Z ** using staged installation 2021-05-17T17:16:53.5135864Z ** R 2021-05-17T17:16:53.5232809Z ** inst 2021-05-17T17:16:53.5239024Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:54.5183034Z ** help 2021-05-17T17:16:54.5758494Z *** installing help indices 2021-05-17T17:16:54.6186228Z ** building package indices 2021-05-17T17:16:54.8597312Z ** installing vignettes 2021-05-17T17:16:54.8656588Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:55.1343508Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:55.4038080Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:55.4050286Z * DONE (tidyselect) 2021-05-17T17:16:55.6811618Z * installing *source* package ‘generics’ ... 2021-05-17T17:16:55.6843139Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-17T17:16:55.6844415Z ** using staged installation 2021-05-17T17:16:55.6977657Z ** R 2021-05-17T17:16:55.7031286Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:56.0096044Z ** help 2021-05-17T17:16:56.1265794Z *** installing help indices 2021-05-17T17:16:56.1711633Z ** building package indices 2021-05-17T17:16:56.4065070Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:56.5897272Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:56.7739215Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:56.7745486Z * DONE (generics) 2021-05-17T17:16:57.0480312Z * installing *source* package ‘cpp11’ ... 2021-05-17T17:16:57.0515724Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-17T17:16:57.0517109Z ** using staged installation 2021-05-17T17:16:57.0677253Z ** R 2021-05-17T17:16:57.0721384Z ** inst 2021-05-17T17:16:57.0750398Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:16:57.4753179Z ** help 2021-05-17T17:16:57.4967222Z *** installing help indices 2021-05-17T17:16:57.5148670Z ** building package indices 2021-05-17T17:16:57.7071430Z ** installing vignettes 2021-05-17T17:16:57.7126449Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:16:57.8924057Z ** testing if installed package can be loaded from final location 2021-05-17T17:16:58.0745751Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:16:58.0756083Z * DONE (cpp11) 2021-05-17T17:16:58.5765558Z * installing *source* package ‘dplyr’ ... 2021-05-17T17:16:58.5894815Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-17T17:16:58.5897293Z ** using staged installation 2021-05-17T17:16:58.6113183Z ** libs 2021-05-17T17:16:58.6163262Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-17T17:16:58.7507591Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-17T17:16:58.9138232Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-17T17:16:59.0386226Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-17T17:16:59.5696340Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-17T17:16:59.6744570Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-17T17:16:59.7836779Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-17T17:16:59.8939577Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-17T17:17:00.0221814Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-17T17:17:00.1439359Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-17T17:17:00.2382703Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-17T17:17:00.4014747Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:00.4703020Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-17T17:17:00.4720392Z ** R 2021-05-17T17:17:00.5164071Z ** data 2021-05-17T17:17:00.5168851Z *** moving datasets to lazyload DB 2021-05-17T17:17:00.6126127Z ** inst 2021-05-17T17:17:00.6153755Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:05.2045068Z ** help 2021-05-17T17:17:05.7157471Z *** installing help indices 2021-05-17T17:17:05.9631549Z *** copying figures 2021-05-17T17:17:05.9636887Z ** building package indices 2021-05-17T17:17:06.3261469Z ** installing vignettes 2021-05-17T17:17:06.3395803Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:06.8192115Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:06.8372656Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:07.4078976Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:07.4132135Z * DONE (dplyr) 2021-05-17T17:17:07.7887204Z * installing *source* package ‘tidyr’ ... 2021-05-17T17:17:07.7960571Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-17T17:17:07.7961926Z ** using staged installation 2021-05-17T17:17:07.8143681Z ** libs 2021-05-17T17:17:07.8209355Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-17T17:17:08.8027742Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-17T17:17:09.1385363Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-17T17:17:10.8097934Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-17T17:17:12.0940974Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:12.1747257Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-17T17:17:12.1771186Z ** R 2021-05-17T17:17:12.1925963Z ** data 2021-05-17T17:17:12.1937726Z *** moving datasets to lazyload DB 2021-05-17T17:17:12.3764215Z ** inst 2021-05-17T17:17:12.3786348Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:14.1666078Z ** help 2021-05-17T17:17:14.2854220Z *** installing help indices 2021-05-17T17:17:14.3627761Z *** copying figures 2021-05-17T17:17:14.3633093Z ** building package indices 2021-05-17T17:17:14.6211685Z ** installing vignettes 2021-05-17T17:17:14.6325412Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:15.1271902Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:15.1463690Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:15.6633204Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:15.6652642Z * DONE (tidyr) 2021-05-17T17:17:15.6781804Z 2021-05-17T17:17:15.6782808Z The downloaded source packages are in 2021-05-17T17:17:15.6784060Z ‘/tmp/RtmpHheZom/downloaded_packages’ 2021-05-17T17:17:15.8622667Z 2021-05-17T17:17:15.8633734Z checking for file ‘/tmp/RtmpHheZom/remotes72621a617602/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-17T17:17:15.8674096Z 2021-05-17T17:17:15.8677076Z ✔ checking for file ‘/tmp/RtmpHheZom/remotes72621a617602/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-17T17:17:15.8767798Z 2021-05-17T17:17:15.8768654Z 2021-05-17T17:17:15.8769688Z ─ preparing ‘aghast’: 2021-05-17T17:17:15.8770180Z 2021-05-17T17:17:15.8770637Z 2021-05-17T17:17:15.8834102Z checking DESCRIPTION meta-information ... 2021-05-17T17:17:15.8860417Z 2021-05-17T17:17:15.8863862Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:17:15.9096847Z 2021-05-17T17:17:15.9129458Z 2021-05-17T17:17:15.9132424Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:17:15.9142616Z 2021-05-17T17:17:15.9168263Z 2021-05-17T17:17:15.9170521Z ─ checking for empty or unneeded directories 2021-05-17T17:17:15.9173820Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:17:15.9182929Z 2021-05-17T17:17:15.9208526Z 2021-05-17T17:17:15.9210373Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-17T17:17:15.9280921Z 2021-05-17T17:17:15.9283111Z 2021-05-17T17:17:15.9284398Z 2021-05-17T17:17:15.9360507Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:17:15.9361290Z (as ‘lib’ is unspecified) 2021-05-17T17:17:16.1452118Z * installing *source* package ‘aghast’ ... 2021-05-17T17:17:16.1453720Z ** using staged installation 2021-05-17T17:17:16.1615933Z ** R 2021-05-17T17:17:16.1671944Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:16.6061690Z ** help 2021-05-17T17:17:16.6353701Z *** installing help indices 2021-05-17T17:17:16.6579726Z ** building package indices 2021-05-17T17:17:16.8595163Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:17.0429866Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:17.2294234Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:17.2300523Z * DONE (aghast) 2021-05-17T17:17:17.2398137Z Installing 1 packages: covr 2021-05-17T17:17:17.2409018Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:17:17.2409804Z (as ‘lib’ is unspecified) 2021-05-17T17:17:32.1436225Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-17T17:17:32.1438724Z 2021-05-17T17:17:32.1448295Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-17T17:17:32.6381167Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-17T17:17:32.6445772Z ================================================== 2021-05-17T17:17:32.6446772Z downloaded 81 KB 2021-05-17T17:17:32.6447325Z 2021-05-17T17:17:32.6486016Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-17T17:17:33.8544724Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-17T17:17:33.8699763Z ================================================== 2021-05-17T17:17:33.8700274Z downloaded 89 KB 2021-05-17T17:17:33.8701171Z 2021-05-17T17:17:33.8743421Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-17T17:17:34.3807911Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-17T17:17:34.3876764Z ================================================== 2021-05-17T17:17:34.3877317Z downloaded 144 KB 2021-05-17T17:17:34.3877603Z 2021-05-17T17:17:34.6521738Z * installing *source* package ‘lazyeval’ ... 2021-05-17T17:17:34.6548395Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-17T17:17:34.6549671Z ** using staged installation 2021-05-17T17:17:34.6675102Z ** libs 2021-05-17T17:17:34.6724272Z 2021-05-17T17:17:34.6726088Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-17T17:17:34.7331507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:17:34.7708760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-17T17:17:34.8322019Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-17T17:17:34.9067773Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-17T17:17:34.9691374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:17:35.0399563Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:35.0663670Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-17T17:17:35.0665025Z ** R 2021-05-17T17:17:35.0718996Z ** inst 2021-05-17T17:17:35.0731474Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:36.0788750Z ** help 2021-05-17T17:17:36.0790213Z *** installing help indices 2021-05-17T17:17:36.0791115Z ** building package indices 2021-05-17T17:17:36.0791955Z ** installing vignettes 2021-05-17T17:17:36.0793042Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:36.0941438Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:36.1122731Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:36.2969383Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:36.2978900Z * DONE (lazyeval) 2021-05-17T17:17:36.5540189Z * installing *source* package ‘rex’ ... 2021-05-17T17:17:36.5567538Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-17T17:17:36.5570646Z ** using staged installation 2021-05-17T17:17:36.5712194Z ** R 2021-05-17T17:17:36.5769885Z ** inst 2021-05-17T17:17:36.5782430Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:37.0922266Z ** help 2021-05-17T17:17:37.1426750Z *** installing help indices 2021-05-17T17:17:37.1806361Z ** building package indices 2021-05-17T17:17:37.4015735Z ** installing vignettes 2021-05-17T17:17:37.4112128Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:37.5952290Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:37.7813829Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:37.7822310Z * DONE (rex) 2021-05-17T17:17:38.1406255Z * installing *source* package ‘covr’ ... 2021-05-17T17:17:38.1467094Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-17T17:17:38.1469721Z ** using staged installation 2021-05-17T17:17:38.1682637Z ** libs 2021-05-17T17:17:38.1730541Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T17:17:38.2290006Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:38.2440712Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-17T17:17:38.2454201Z ** R 2021-05-17T17:17:38.2590613Z ** inst 2021-05-17T17:17:38.2613345Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:39.6194613Z ** help 2021-05-17T17:17:39.6819105Z *** installing help indices 2021-05-17T17:17:39.7311866Z *** copying figures 2021-05-17T17:17:39.7313305Z ** building package indices 2021-05-17T17:17:39.9625579Z ** installing vignettes 2021-05-17T17:17:39.9684524Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:40.1717892Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:40.1898105Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:40.4114449Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:40.4133733Z * DONE (covr) 2021-05-17T17:17:40.4239978Z 2021-05-17T17:17:40.4240733Z The downloaded source packages are in 2021-05-17T17:17:40.4242067Z ‘/tmp/RtmpHheZom/downloaded_packages’ 2021-05-17T17:17:40.4418865Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-17T17:17:40.4419503Z Rscript -e "tic::before_install()" 2021-05-17T17:17:40.4464805Z shell: /usr/bin/bash -e {0} 2021-05-17T17:17:40.4465181Z env: 2021-05-17T17:17:40.4465634Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:17:40.4466086Z TIC_DEPLOY_KEY: 2021-05-17T17:17:40.4466874Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:17:40.4468472Z GITHUB_PAT: *** 2021-05-17T17:17:40.4469332Z COVERALLS_TOKEN: *** 2021-05-17T17:17:40.4469813Z continue-on-error: true 2021-05-17T17:17:40.4470279Z VDIFFR_RUN_TESTS: 2021-05-17T17:17:40.4470734Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:17:40.4471172Z TZ: UTC 2021-05-17T17:17:40.4471540Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:17:40.4471944Z NOT_CRAN: true 2021-05-17T17:17:40.4472310Z ##[endgroup] 2021-05-17T17:17:40.7278250Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:17:40.8598021Z Running before_install: step_install_remote_binaries() 2021-05-17T17:17:41.4170711Z Installing kirby21.t1 binaries 2021-05-17T17:17:41.4181976Z [1] "neuroconductor/kirby21.t1" 2021-05-17T17:17:41.6921202Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T17:17:41.6928144Z Installing oro.nifti binaries 2021-05-17T17:17:41.6935928Z [1] "neuroconductor/oro.nifti" 2021-05-17T17:17:41.8341922Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T17:17:41.8348938Z Installing kirby21.fmri binaries 2021-05-17T17:17:41.8356582Z [1] "neuroconductor/kirby21.fmri" 2021-05-17T17:17:42.0305839Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T17:17:42.0313533Z Installing neurobase binaries 2021-05-17T17:17:42.0321464Z [1] "neuroconductor/neurobase" 2021-05-17T17:17:42.1733216Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T17:17:42.1859101Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-17T17:17:42.1859999Z remotes::install_deps(dependencies = TRUE) 2021-05-17T17:17:42.1860844Z remotes::install_cran("rcmdcheck") 2021-05-17T17:17:42.1861393Z remotes::install_cran("markdown") 2021-05-17T17:17:42.1868560Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:17:42.1868967Z env: 2021-05-17T17:17:42.1869401Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:17:42.1869847Z TIC_DEPLOY_KEY: 2021-05-17T17:17:42.1870636Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:17:42.1872167Z GITHUB_PAT: *** 2021-05-17T17:17:42.1873020Z COVERALLS_TOKEN: *** 2021-05-17T17:17:42.1873505Z continue-on-error: true 2021-05-17T17:17:42.1873966Z VDIFFR_RUN_TESTS: 2021-05-17T17:17:42.1874427Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:17:42.1874861Z TZ: UTC 2021-05-17T17:17:42.1875231Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:17:42.1875659Z NOT_CRAN: true 2021-05-17T17:17:42.1876025Z ##[endgroup] 2021-05-17T17:18:00.7852075Z kirby21.t1 (NA -> d9d2c5888...) [GitHub] 2021-05-17T17:18:00.7853866Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-17T17:18:00.7854985Z kirby21.fmri (NA -> e59273128...) [GitHub] 2021-05-17T17:18:00.7856088Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-17T17:18:00.7858132Z colorspace (NA -> 2.0-1 ) [CRAN] 2021-05-17T17:18:00.7859136Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T17:18:00.7860055Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T17:18:00.7861146Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-17T17:18:00.7861989Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-17T17:18:00.7862841Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T17:18:00.7863699Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T17:18:00.7866162Z viridisLite (NA -> 0.4.0 ) [CRAN] 2021-05-17T17:18:00.7866933Z RColorBrewer (NA -> 1.1-2 ) [CRAN] 2021-05-17T17:18:00.7867644Z munsell (NA -> 0.5.0 ) [CRAN] 2021-05-17T17:18:00.7868325Z labeling (NA -> 0.4.2 ) [CRAN] 2021-05-17T17:18:00.7868968Z farver (NA -> 2.1.0 ) [CRAN] 2021-05-17T17:18:00.7869613Z kirby21.base (NA -> 1.7.3 ) [CRAN] 2021-05-17T17:18:00.7870237Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T17:18:00.7870861Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T17:18:00.7871472Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-17T17:18:00.7872111Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-17T17:18:00.7872750Z scales (NA -> 1.1.1 ) [CRAN] 2021-05-17T17:18:00.7873355Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T17:18:00.7873978Z matlabr (NA -> 1.5.2 ) [CRAN] 2021-05-17T17:18:01.0857165Z Downloading GitHub repo neuroconductor/kirby21.t1@d9d2c5888aae676ae04f31146111014c589ea26f 2021-05-17T17:18:05.1408033Z kirby21.base (NA -> 05f22dce0...) [GitHub] 2021-05-17T17:18:05.3668776Z Downloading GitHub repo neuroconductor/kirby21.base@05f22dce05785d199035f6a933598c1a9fd9119d 2021-05-17T17:18:06.2542570Z 2021-05-17T17:18:06.5781968Z 2021-05-17T17:18:06.5800770Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f96ad2cee1/neuroconductor-kirby21.base-05f22dc/DESCRIPTION’ ... 2021-05-17T17:18:06.5871789Z 2021-05-17T17:18:06.5874194Z ✔ checking for file ‘/tmp/RtmpUFqVwN/remotesd4f96ad2cee1/neuroconductor-kirby21.base-05f22dc/DESCRIPTION’ 2021-05-17T17:18:06.5961839Z 2021-05-17T17:18:06.5962479Z 2021-05-17T17:18:06.5963455Z ─ preparing ‘kirby21.base’: 2021-05-17T17:18:06.5963794Z 2021-05-17T17:18:06.5964077Z 2021-05-17T17:18:06.5978495Z checking DESCRIPTION meta-information ... 2021-05-17T17:18:06.6002184Z 2021-05-17T17:18:06.6004224Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:18:06.6223642Z 2021-05-17T17:18:06.6425278Z 2021-05-17T17:18:06.6427882Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:18:06.6445112Z 2021-05-17T17:18:06.6482128Z 2021-05-17T17:18:06.6483660Z ─ checking for empty or unneeded directories 2021-05-17T17:18:06.6510260Z ─ building ‘kirby21.base_1.7.3.tar.gz’ 2021-05-17T17:18:06.6511118Z 2021-05-17T17:18:06.6592105Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:18:06.6593275Z (as ‘lib’ is unspecified) 2021-05-17T17:18:06.8738797Z * installing *source* package ‘kirby21.base’ ... 2021-05-17T17:18:06.8740446Z ** using staged installation 2021-05-17T17:18:06.8886837Z ** R 2021-05-17T17:18:06.8996766Z ** data 2021-05-17T17:18:06.9000075Z *** moving datasets to lazyload DB 2021-05-17T17:18:06.9065139Z ** inst 2021-05-17T17:18:06.9072356Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:07.2607909Z ** help 2021-05-17T17:18:07.2842902Z *** installing help indices 2021-05-17T17:18:07.3083833Z ** building package indices 2021-05-17T17:18:07.5120564Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:07.7055370Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:07.8978209Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:07.8984607Z * DONE (kirby21.base) 2021-05-17T17:18:07.9848158Z Skipping install of 'kirby21.base' from a github remote, the SHA1 (05f22dce) has not changed since last install. 2021-05-17T17:18:07.9849682Z Use `force = TRUE` to force installation 2021-05-17T17:18:08.1759778Z 2021-05-17T17:18:08.1760704Z 2021-05-17T17:18:08.1770755Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f975370bf7/neuroconductor-kirby21.t1-d9d2c58/DESCRIPTION’ ... 2021-05-17T17:18:08.1801821Z 2021-05-17T17:18:08.1803984Z ✔ checking for file ‘/tmp/RtmpUFqVwN/remotesd4f975370bf7/neuroconductor-kirby21.t1-d9d2c58/DESCRIPTION’ 2021-05-17T17:18:08.2263402Z 2021-05-17T17:18:08.2264575Z 2021-05-17T17:18:08.2266053Z ─ preparing ‘kirby21.t1’: 2021-05-17T17:18:08.2275985Z checking DESCRIPTION meta-information ... 2021-05-17T17:18:08.2307861Z 2021-05-17T17:18:08.2309344Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:18:08.2548872Z 2021-05-17T17:18:08.2587857Z 2021-05-17T17:18:08.2589670Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:18:08.2599896Z 2021-05-17T17:18:08.2626280Z 2021-05-17T17:18:08.2627723Z ─ checking for empty or unneeded directories 2021-05-17T17:18:08.2652571Z ─ building ‘kirby21.t1_1.7.3.2.tar.gz’ 2021-05-17T17:18:08.2661016Z 2021-05-17T17:18:08.2662946Z 2021-05-17T17:18:08.2663771Z 2021-05-17T17:18:08.3585429Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:18:08.3587031Z (as ‘lib’ is unspecified) 2021-05-17T17:18:08.5585221Z * installing *source* package ‘kirby21.t1’ ... 2021-05-17T17:18:08.5587307Z ** using staged installation 2021-05-17T17:18:08.5724827Z ** R 2021-05-17T17:18:08.5750849Z ** inst 2021-05-17T17:18:08.5757731Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:08.7981644Z ** help 2021-05-17T17:18:08.8093757Z *** installing help indices 2021-05-17T17:18:08.8337086Z ** building package indices 2021-05-17T17:18:09.0255542Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:09.2240057Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:09.4198133Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:09.4203287Z * DONE (kirby21.t1) 2021-05-17T17:18:09.6297660Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-17T17:18:11.3634066Z 2021-05-17T17:18:11.3635581Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-17T17:18:11.3636372Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T17:18:11.3637089Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T17:18:11.3637817Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T17:18:11.3638639Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T17:18:11.3639245Z rticles (NA -> 0.19 ) [CRAN] 2021-05-17T17:18:11.3639853Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T17:18:11.3640811Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T17:18:11.5456157Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-17T17:18:12.7283195Z 2021-05-17T17:18:12.9202133Z 2021-05-17T17:18:12.9212769Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f97271e227/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-17T17:18:12.9246191Z 2021-05-17T17:18:12.9248936Z ✔ checking for file ‘/tmp/RtmpUFqVwN/remotesd4f97271e227/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-17T17:18:12.9349553Z 2021-05-17T17:18:12.9377744Z 2021-05-17T17:18:12.9379807Z ─ preparing ‘RNifti’: 2021-05-17T17:18:12.9497014Z checking DESCRIPTION meta-information ... 2021-05-17T17:18:12.9524289Z 2021-05-17T17:18:12.9526415Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:18:12.9552169Z ─ cleaning src 2021-05-17T17:18:12.9562223Z 2021-05-17T17:18:12.9588153Z 2021-05-17T17:18:12.9590051Z ─ running ‘cleanup’ 2021-05-17T17:18:13.0058475Z 2021-05-17T17:18:13.0095191Z 2021-05-17T17:18:13.0098329Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:18:13.0440323Z 2021-05-17T17:18:13.0473485Z 2021-05-17T17:18:13.0475863Z ─ checking for empty or unneeded directories 2021-05-17T17:18:13.0493472Z 2021-05-17T17:18:13.0520956Z 2021-05-17T17:18:13.0523028Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-17T17:18:13.3489194Z 2021-05-17T17:18:13.3492609Z 2021-05-17T17:18:13.3494081Z 2021-05-17T17:18:13.3600463Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:18:13.3601811Z (as ‘lib’ is unspecified) 2021-05-17T17:18:13.7058082Z * installing *source* package ‘RNifti’ ... 2021-05-17T17:18:13.7059655Z ** using staged installation 2021-05-17T17:18:13.7233941Z ** libs 2021-05-17T17:18:13.7286488Z 2021-05-17T17:18:13.7289010Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-17T17:18:32.2054171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-17T17:18:32.2915485Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-17T17:18:32.3781435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-17T17:18:32.4176506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-17T17:18:32.5268647Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-17T17:18:32.9885501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-17T17:18:33.0310970Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-17T17:18:33.1518462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-17T17:18:33.3048660Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-17T17:18:33.4354818Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-17T17:18:33.6695895Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-17T17:18:33.7790671Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-17T17:18:34.2882494Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-17T17:18:34.3834755Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-17T17:18:34.6863683Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-17T17:18:34.7234177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-17T17:18:34.7703835Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-17T17:18:34.8486407Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-17T17:18:35.9678143Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-17T17:18:38.2934040Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:18:38.4883668Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-17T17:18:38.5015198Z ** R 2021-05-17T17:18:38.5093939Z ** inst 2021-05-17T17:18:38.5124401Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:39.3145188Z ** help 2021-05-17T17:18:39.3676426Z *** installing help indices 2021-05-17T17:18:39.4032199Z ** building package indices 2021-05-17T17:18:39.6250893Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:39.8973425Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:18:39.9222535Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:40.1992625Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:40.2004680Z * DONE (RNifti) 2021-05-17T17:18:40.2173148Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-17T17:18:40.2196418Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:18:40.2198677Z (as ‘lib’ is unspecified) 2021-05-17T17:18:55.4490067Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T17:18:55.7308262Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T17:18:55.7309632Z ================================================== 2021-05-17T17:18:55.7310302Z downloaded 7843 bytes 2021-05-17T17:18:55.7310779Z 2021-05-17T17:18:55.7349920Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T17:18:56.1227862Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T17:18:56.1245389Z ================================================== 2021-05-17T17:18:56.1246203Z downloaded 28 KB 2021-05-17T17:18:56.1246644Z 2021-05-17T17:18:56.1288593Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-17T17:18:56.5292080Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-17T17:18:56.5354707Z ================================================== 2021-05-17T17:18:56.5355619Z downloaded 70 KB 2021-05-17T17:18:56.5356209Z 2021-05-17T17:18:56.5402091Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T17:18:56.9453193Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T17:18:57.0034101Z ================================================== 2021-05-17T17:18:57.0035155Z downloaded 3.1 MB 2021-05-17T17:18:57.0035645Z 2021-05-17T17:18:57.0077718Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-17T17:18:58.1520066Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-17T17:18:58.1861084Z ================================================== 2021-05-17T17:18:58.1862773Z downloaded 1.6 MB 2021-05-17T17:18:58.1863461Z 2021-05-17T17:18:58.1915897Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T17:18:58.5598237Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T17:18:58.5598980Z ================================================== 2021-05-17T17:18:58.5599477Z downloaded 21 KB 2021-05-17T17:18:58.5602934Z 2021-05-17T17:18:58.5647227Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T17:18:58.9494002Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T17:18:58.9495469Z ================================================== 2021-05-17T17:18:58.9496223Z downloaded 10 KB 2021-05-17T17:18:58.9496753Z 2021-05-17T17:18:59.1556998Z * installing *source* package ‘base64enc’ ... 2021-05-17T17:18:59.1564514Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:59.1565613Z ** using staged installation 2021-05-17T17:18:59.1668460Z ** libs 2021-05-17T17:18:59.1718508Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:18:59.2799114Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T17:18:59.3545555Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T17:18:59.4281312Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:18:59.4509964Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T17:18:59.4541394Z ** R 2021-05-17T17:18:59.4561224Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:59.7141229Z ** help 2021-05-17T17:18:59.7377284Z *** installing help indices 2021-05-17T17:18:59.7548696Z ** building package indices 2021-05-17T17:18:59.9496900Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:00.1350952Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:19:00.1531936Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:00.3364017Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:00.3369848Z * DONE (base64enc) 2021-05-17T17:19:00.5573373Z * installing *source* package ‘tinytex’ ... 2021-05-17T17:19:00.5585468Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:00.5586587Z ** using staged installation 2021-05-17T17:19:00.5796977Z ** R 2021-05-17T17:19:00.5870310Z ** inst 2021-05-17T17:19:00.5877703Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:01.3063678Z ** help 2021-05-17T17:19:01.3356921Z *** installing help indices 2021-05-17T17:19:01.3627780Z ** building package indices 2021-05-17T17:19:01.5697946Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:01.7602744Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:01.9634760Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:01.9645565Z * DONE (tinytex) 2021-05-17T17:19:02.1830487Z * installing *source* package ‘abind’ ... 2021-05-17T17:19:02.1841872Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:02.1842861Z ** using staged installation 2021-05-17T17:19:02.1949718Z ** R 2021-05-17T17:19:02.1999923Z ** inst 2021-05-17T17:19:02.2007389Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:02.7615142Z ** help 2021-05-17T17:19:02.7873183Z *** installing help indices 2021-05-17T17:19:02.8099323Z ** building package indices 2021-05-17T17:19:03.0138892Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:03.1991850Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:03.3855767Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:03.3864890Z * DONE (abind) 2021-05-17T17:19:03.5942629Z * installing *source* package ‘bitops’ ... 2021-05-17T17:19:03.5950829Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:03.5951792Z ** using staged installation 2021-05-17T17:19:03.6046701Z ** libs 2021-05-17T17:19:03.6098368Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T17:19:03.7943205Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T17:19:03.8534636Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:19:03.9008544Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:19:03.9183092Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T17:19:03.9185093Z ** R 2021-05-17T17:19:03.9210660Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:04.1520445Z ** help 2021-05-17T17:19:04.1785871Z *** installing help indices 2021-05-17T17:19:04.1969625Z ** building package indices 2021-05-17T17:19:04.3954322Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:04.5796658Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:19:04.5973985Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:04.7771400Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:04.7776815Z * DONE (bitops) 2021-05-17T17:19:05.0335120Z * installing *source* package ‘htmltools’ ... 2021-05-17T17:19:05.0359435Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:05.0360663Z ** using staged installation 2021-05-17T17:19:05.0515019Z ** libs 2021-05-17T17:19:05.0562507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:19:05.1020568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T17:19:05.2083574Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:19:05.2306086Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T17:19:05.2319699Z ** R 2021-05-17T17:19:05.2449994Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:06.7180964Z ** help 2021-05-17T17:19:06.7981048Z *** installing help indices 2021-05-17T17:19:06.8574654Z ** building package indices 2021-05-17T17:19:07.1056646Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:07.3164448Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:19:07.3347411Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:07.5640362Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:07.5655524Z * DONE (htmltools) 2021-05-17T17:19:08.3494532Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T17:19:08.3775333Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:08.3777150Z ** using staged installation 2021-05-17T17:19:08.4054301Z ** R 2021-05-17T17:19:08.4428860Z ** inst 2021-05-17T17:19:08.4652504Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:12.0565987Z ** help 2021-05-17T17:19:12.2565036Z *** installing help indices 2021-05-17T17:19:12.4257756Z *** copying figures 2021-05-17T17:19:12.4258472Z ** building package indices 2021-05-17T17:19:12.7301764Z ** installing vignettes 2021-05-17T17:19:12.7372077Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:12.9947746Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:13.3130496Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:13.3190523Z * DONE (rmarkdown) 2021-05-17T17:19:13.8983833Z * installing *source* package ‘rticles’ ... 2021-05-17T17:19:13.9152060Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:13.9154329Z ** using staged installation 2021-05-17T17:19:13.9374335Z ** R 2021-05-17T17:19:13.9436693Z ** inst 2021-05-17T17:19:13.9663722Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:14.4187158Z ** help 2021-05-17T17:19:14.4572015Z *** installing help indices 2021-05-17T17:19:14.4907557Z ** building package indices 2021-05-17T17:19:14.7006014Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:14.9557344Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:15.2114567Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:15.2158621Z * DONE (rticles) 2021-05-17T17:19:15.2303245Z 2021-05-17T17:19:15.2304303Z The downloaded source packages are in 2021-05-17T17:19:15.2305787Z ‘/tmp/RtmpUFqVwN/downloaded_packages’ 2021-05-17T17:19:15.3223866Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-17T17:19:15.3225878Z Use `force = TRUE` to force installation 2021-05-17T17:19:15.5156830Z 2021-05-17T17:19:15.5168292Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f9544f3864/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-17T17:19:15.5204259Z 2021-05-17T17:19:15.5207327Z ✔ checking for file ‘/tmp/RtmpUFqVwN/remotesd4f9544f3864/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-17T17:19:15.5419121Z 2021-05-17T17:19:15.5449391Z 2021-05-17T17:19:15.5451654Z ─ preparing ‘oro.nifti’: 2021-05-17T17:19:15.5571181Z checking DESCRIPTION meta-information ... 2021-05-17T17:19:15.5598239Z 2021-05-17T17:19:15.5600503Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:19:15.6982777Z 2021-05-17T17:19:15.7015788Z 2021-05-17T17:19:15.7020074Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:19:15.7044611Z 2021-05-17T17:19:15.7069070Z 2021-05-17T17:19:15.7071172Z ─ checking for empty or unneeded directories 2021-05-17T17:19:15.7074300Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-17T17:19:15.7077302Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-17T17:19:15.7170817Z 2021-05-17T17:19:15.7195910Z 2021-05-17T17:19:15.7198058Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-17T17:19:16.2071116Z 2021-05-17T17:19:16.2074509Z 2021-05-17T17:19:16.2076020Z 2021-05-17T17:19:16.2258108Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:19:16.2258983Z (as ‘lib’ is unspecified) 2021-05-17T17:19:16.7580423Z * installing *source* package ‘oro.nifti’ ... 2021-05-17T17:19:16.7582294Z ** using staged installation 2021-05-17T17:19:16.7775167Z ** R 2021-05-17T17:19:16.8213570Z ** demo 2021-05-17T17:19:16.8221740Z ** inst 2021-05-17T17:19:16.8293648Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:23.7078604Z 2021-05-17T17:19:23.7080318Z ** help 2021-05-17T17:19:23.7081591Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-17T17:19:24.0881175Z *** installing help indices 2021-05-17T17:19:24.3988516Z ** building package indices 2021-05-17T17:19:24.8308372Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:25.4425662Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:26.1659009Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:26.1740533Z * DONE (oro.nifti) 2021-05-17T17:19:26.4530403Z Downloading GitHub repo neuroconductor/kirby21.fmri@e59273128069905f2da32e9d48864ec7e73c1ad7 2021-05-17T17:19:43.9175134Z 2021-05-17T17:19:44.1096601Z 2021-05-17T17:19:44.1102651Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f9299ea66f/neuroconductor-kirby21.fmri-e592731/DESCRIPTION’ ... 2021-05-17T17:19:44.1104030Z 2021-05-17T17:19:44.1110652Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f9299ea66f/neuroconductor-kirby21.fmri-e592731/DESCRIPTION’ ... 2021-05-17T17:19:44.1138341Z 2021-05-17T17:19:44.1140210Z ✔ checking for file ‘/tmp/RtmpUFqVwN/remotesd4f9299ea66f/neuroconductor-kirby21.fmri-e592731/DESCRIPTION’ 2021-05-17T17:19:44.3512217Z 2021-05-17T17:19:44.3542263Z 2021-05-17T17:19:44.3544811Z ─ preparing ‘kirby21.fmri’: 2021-05-17T17:19:44.3561715Z checking DESCRIPTION meta-information ... 2021-05-17T17:19:44.3646815Z 2021-05-17T17:19:44.3649108Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:19:44.4642282Z 2021-05-17T17:19:44.4670654Z 2021-05-17T17:19:44.4673416Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:19:44.4683251Z 2021-05-17T17:19:44.4718162Z 2021-05-17T17:19:44.4720410Z ─ checking for empty or unneeded directories 2021-05-17T17:19:44.4729719Z 2021-05-17T17:19:44.4754147Z 2021-05-17T17:19:44.4755136Z ─ building ‘kirby21.fmri_1.7.0.tar.gz’ 2021-05-17T17:19:44.4763160Z 2021-05-17T17:19:44.4765206Z 2021-05-17T17:19:44.4765527Z 2021-05-17T17:19:44.8733364Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:19:44.8734793Z (as ‘lib’ is unspecified) 2021-05-17T17:19:45.0734676Z * installing *source* package ‘kirby21.fmri’ ... 2021-05-17T17:19:45.0736010Z ** using staged installation 2021-05-17T17:19:45.0878760Z ** R 2021-05-17T17:19:45.0905228Z ** inst 2021-05-17T17:19:45.0912161Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:45.3221638Z ** help 2021-05-17T17:19:45.3342192Z *** installing help indices 2021-05-17T17:19:45.3583483Z ** building package indices 2021-05-17T17:19:45.5545186Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:45.7514363Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:45.9472174Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:45.9477194Z * DONE (kirby21.fmri) 2021-05-17T17:19:46.3320556Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-17T17:19:48.3639754Z 2021-05-17T17:19:48.3641999Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T17:19:48.3642959Z Installing 4 packages: R.methodsS3, R.oo, R.utils, matrixStats 2021-05-17T17:19:48.3644220Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-17T17:19:48.3645203Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-17T17:19:48.3646157Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-17T17:19:48.3654846Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:19:48.3655744Z (as ‘lib’ is unspecified) 2021-05-17T17:20:04.2475220Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T17:20:04.7060456Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T17:20:04.7061834Z ================================================== 2021-05-17T17:20:04.7062447Z downloaded 23 KB 2021-05-17T17:20:04.7062859Z 2021-05-17T17:20:04.7109208Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T17:20:05.2665629Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T17:20:05.2936713Z ================================================== 2021-05-17T17:20:05.2937284Z downloaded 373 KB 2021-05-17T17:20:05.2938283Z 2021-05-17T17:20:05.2986488Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-17T17:20:05.8052858Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-17T17:20:05.8313716Z ================================================== 2021-05-17T17:20:05.8314281Z downloaded 353 KB 2021-05-17T17:20:05.8314565Z 2021-05-17T17:20:05.8357947Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T17:20:06.1710454Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T17:20:06.1876247Z ================================================== 2021-05-17T17:20:06.1876832Z downloaded 190 KB 2021-05-17T17:20:06.1877110Z 2021-05-17T17:20:06.4205322Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T17:20:06.4221942Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:06.4223169Z ** using staged installation 2021-05-17T17:20:06.4346926Z ** R 2021-05-17T17:20:06.4412921Z ** inst 2021-05-17T17:20:06.4421183Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:06.9287219Z ** help 2021-05-17T17:20:06.9666215Z *** installing help indices 2021-05-17T17:20:07.0025373Z ** building package indices 2021-05-17T17:20:07.2174518Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:07.4071587Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:07.5983040Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:07.5991957Z * DONE (R.methodsS3) 2021-05-17T17:20:08.0424200Z * installing *source* package ‘matrixStats’ ... 2021-05-17T17:20:08.0523053Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:08.0525932Z ** using staged installation 2021-05-17T17:20:08.0680713Z ** libs 2021-05-17T17:20:08.0743248Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T17:20:08.1161277Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T17:20:08.1993930Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T17:20:08.3031745Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T17:20:08.3974412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T17:20:08.5317552Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T17:20:09.8063570Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T17:20:10.1590587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T17:20:11.5672661Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T17:20:11.7732552Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T17:20:11.8371271Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T17:20:12.0336677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T17:20:12.1740919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T17:20:12.3217100Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T17:20:12.3887700Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T17:20:13.7530811Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T17:20:14.7492437Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T17:20:15.7463944Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T17:20:16.5900290Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T17:20:17.4341171Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T17:20:19.3774819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T17:20:19.5108942Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T17:20:20.4636963Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T17:20:21.0257332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T17:20:21.8845852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T17:20:22.2894396Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T17:20:23.7848496Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T17:20:35.4236676Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T17:20:35.9692001Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T17:20:36.6093361Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T17:20:36.7297821Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T17:20:36.8402229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T17:20:37.0786385Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T17:20:37.2465094Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T17:20:37.6527541Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T17:21:29.7208486Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:21:29.8128605Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T17:21:29.8261745Z ** R 2021-05-17T17:21:29.8475511Z ** inst 2021-05-17T17:21:29.8522616Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:31.2523150Z ** help 2021-05-17T17:21:31.3886235Z *** installing help indices 2021-05-17T17:21:31.4782278Z ** building package indices 2021-05-17T17:21:31.7461819Z ** installing vignettes 2021-05-17T17:21:31.7498375Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:31.9399834Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:21:31.9643455Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:32.1702093Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:32.1721120Z * DONE (matrixStats) 2021-05-17T17:21:32.5575063Z * installing *source* package ‘R.oo’ ... 2021-05-17T17:21:32.5646970Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T17:21:32.5648295Z ** using staged installation 2021-05-17T17:21:32.5783501Z ** R 2021-05-17T17:21:32.6103997Z ** inst 2021-05-17T17:21:32.6120345Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:35.5296864Z ** help 2021-05-17T17:21:36.0169042Z *** installing help indices 2021-05-17T17:21:36.3920589Z ** building package indices 2021-05-17T17:21:36.8662699Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:37.0809008Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:37.3765076Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:37.3813993Z * DONE (R.oo) 2021-05-17T17:21:37.9130933Z * installing *source* package ‘R.utils’ ... 2021-05-17T17:21:37.9266856Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T17:21:37.9267691Z ** using staged installation 2021-05-17T17:21:37.9410312Z ** R 2021-05-17T17:21:38.0091194Z ** inst 2021-05-17T17:21:38.0103571Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:44.3566557Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T17:21:44.3568408Z ** help 2021-05-17T17:21:44.3569297Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T17:21:45.2383110Z *** installing help indices 2021-05-17T17:21:45.7178337Z ** building package indices 2021-05-17T17:21:46.4731182Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:46.7252774Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:47.1321944Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:47.1423925Z * DONE (R.utils) 2021-05-17T17:21:47.1547005Z 2021-05-17T17:21:47.1548084Z The downloaded source packages are in 2021-05-17T17:21:47.1549520Z ‘/tmp/RtmpUFqVwN/downloaded_packages’ 2021-05-17T17:21:47.3477957Z 2021-05-17T17:21:47.3489467Z checking for file ‘/tmp/RtmpUFqVwN/remotesd4f97faf8d4f/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-17T17:21:47.3520574Z 2021-05-17T17:21:47.3523712Z ✔ checking for file ‘/tmp/RtmpUFqVwN/remotesd4f97faf8d4f/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-17T17:21:47.3715606Z 2021-05-17T17:21:47.3742258Z 2021-05-17T17:21:47.3744488Z ─ preparing ‘neurobase’: 2021-05-17T17:21:47.3839240Z checking DESCRIPTION meta-information ... 2021-05-17T17:21:47.3868165Z 2021-05-17T17:21:47.3870510Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:21:47.4704483Z 2021-05-17T17:21:47.4735143Z 2021-05-17T17:21:47.4738091Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:21:47.4748653Z 2021-05-17T17:21:47.4772285Z 2021-05-17T17:21:47.4774367Z ─ checking for empty or unneeded directories 2021-05-17T17:21:47.4782579Z 2021-05-17T17:21:47.4804389Z 2021-05-17T17:21:47.4806266Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-17T17:21:47.5468145Z 2021-05-17T17:21:47.5472916Z 2021-05-17T17:21:47.5474427Z 2021-05-17T17:21:47.5573808Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:21:47.5574774Z (as ‘lib’ is unspecified) 2021-05-17T17:21:47.8684374Z * installing *source* package ‘neurobase’ ... 2021-05-17T17:21:47.8685913Z ** using staged installation 2021-05-17T17:21:47.8864321Z ** R 2021-05-17T17:21:47.9068475Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:50.4321554Z ** help 2021-05-17T17:21:50.5965531Z *** installing help indices 2021-05-17T17:21:50.7103426Z ** building package indices 2021-05-17T17:21:50.9962408Z ** installing vignettes 2021-05-17T17:21:51.0018094Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:51.7549605Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:52.5147114Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:52.5168645Z * DONE (neurobase) 2021-05-17T17:21:52.5333459Z Installing 20 packages: colorspace, base64enc, R.methodsS3, R.oo, RNifti, abind, bitops, viridisLite, RColorBrewer, munsell, labeling, farver, kirby21.base, tinytex, htmltools, R.utils, matrixStats, scales, rmarkdown, matlabr 2021-05-17T17:21:52.5341528Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:21:52.5342564Z (as ‘lib’ is unspecified) 2021-05-17T17:22:08.0373179Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/colorspace_2.0-1.tar.gz' 2021-05-17T17:22:08.4264246Z Content type 'binary/octet-stream' length 2191517 bytes (2.1 MB) 2021-05-17T17:22:08.4712809Z ================================================== 2021-05-17T17:22:08.4713851Z downloaded 2.1 MB 2021-05-17T17:22:08.4714319Z 2021-05-17T17:22:08.4754823Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T17:22:08.7433309Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T17:22:08.7434759Z ================================================== 2021-05-17T17:22:08.7435271Z downloaded 7843 bytes 2021-05-17T17:22:08.7435604Z 2021-05-17T17:22:08.7472055Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T17:22:08.9213276Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T17:22:08.9218566Z ================================================== 2021-05-17T17:22:08.9219621Z downloaded 23 KB 2021-05-17T17:22:08.9219968Z 2021-05-17T17:22:08.9266372Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T17:22:09.1967697Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T17:22:09.2154791Z ================================================== 2021-05-17T17:22:09.2155355Z downloaded 373 KB 2021-05-17T17:22:09.2155639Z 2021-05-17T17:22:09.2201572Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T17:22:09.4766949Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T17:22:09.4769760Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T17:22:09.4771242Z In addition: Warning message: 2021-05-17T17:22:09.4772284Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T17:22:09.4774415Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-17T17:22:09.4776318Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-17T17:22:09.4777563Z download of package ‘RNifti’ failed 2021-05-17T17:22:09.4779263Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T17:22:09.7565294Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T17:22:09.7566542Z ================================================== 2021-05-17T17:22:09.7567194Z downloaded 21 KB 2021-05-17T17:22:09.7567647Z 2021-05-17T17:22:09.7604376Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T17:22:09.9288233Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T17:22:09.9289071Z ================================================== 2021-05-17T17:22:09.9289956Z downloaded 10 KB 2021-05-17T17:22:09.9290278Z 2021-05-17T17:22:09.9330733Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/viridisLite_0.4.0.tar.gz' 2021-05-17T17:22:10.2195089Z Content type 'binary/octet-stream' length 1267617 bytes (1.2 MB) 2021-05-17T17:22:10.2485819Z ================================================== 2021-05-17T17:22:10.2486384Z downloaded 1.2 MB 2021-05-17T17:22:10.2486655Z 2021-05-17T17:22:10.2532182Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RColorBrewer_1.1-2.tar.gz' 2021-05-17T17:22:10.6101336Z Content type 'application/x-tar' length 11593 bytes (11 KB) 2021-05-17T17:22:10.6102713Z ================================================== 2021-05-17T17:22:10.6103685Z downloaded 11 KB 2021-05-17T17:22:10.6104006Z 2021-05-17T17:22:10.6144201Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/munsell_0.5.0.tar.gz' 2021-05-17T17:22:10.9063661Z Content type 'application/x-tar' length 181721 bytes (177 KB) 2021-05-17T17:22:10.9178531Z ================================================== 2021-05-17T17:22:10.9179249Z downloaded 177 KB 2021-05-17T17:22:10.9179533Z 2021-05-17T17:22:10.9225809Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/labeling_0.4.2.tar.gz' 2021-05-17T17:22:11.0891703Z Content type 'binary/octet-stream' length 10239 bytes 2021-05-17T17:22:11.0893239Z ================================================== 2021-05-17T17:22:11.0893989Z downloaded 10239 bytes 2021-05-17T17:22:11.0894529Z 2021-05-17T17:22:11.0930376Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/farver_2.1.0.tar.gz' 2021-05-17T17:22:11.5328339Z Content type 'binary/octet-stream' length 1278316 bytes (1.2 MB) 2021-05-17T17:22:11.6114794Z ================================================== 2021-05-17T17:22:11.6115359Z downloaded 1.2 MB 2021-05-17T17:22:11.6115645Z 2021-05-17T17:22:11.6162778Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/kirby21.base_1.7.3.tar.gz' 2021-05-17T17:22:12.3118256Z Content type 'binary/octet-stream' length 9903 bytes 2021-05-17T17:22:12.3120480Z ================================================== 2021-05-17T17:22:12.3121015Z downloaded 9903 bytes 2021-05-17T17:22:12.3121347Z 2021-05-17T17:22:12.3168397Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T17:22:12.5888709Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T17:22:12.5890563Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T17:22:13.2626750Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T17:22:13.2755222Z ================================================== 2021-05-17T17:22:13.2755803Z downloaded 190 KB 2021-05-17T17:22:13.2756089Z 2021-05-17T17:22:13.2804242Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/scales_1.1.1.tar.gz' 2021-05-17T17:22:13.6670953Z Content type 'binary/octet-stream' length 514712 bytes (502 KB) 2021-05-17T17:22:13.6882642Z ================================================== 2021-05-17T17:22:13.6883277Z downloaded 502 KB 2021-05-17T17:22:13.6883560Z 2021-05-17T17:22:13.6932847Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T17:22:13.8623428Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T17:22:13.8991518Z ================================================== 2021-05-17T17:22:13.8992463Z downloaded 3.1 MB 2021-05-17T17:22:13.8992983Z 2021-05-17T17:22:13.9133795Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matlabr_1.5.2.tar.gz' 2021-05-17T17:22:14.4196456Z Content type 'application/x-tar' length 6257 bytes 2021-05-17T17:22:14.4197276Z ================================================== 2021-05-17T17:22:14.4197774Z downloaded 6257 bytes 2021-05-17T17:22:14.4198105Z 2021-05-17T17:22:14.8957573Z * installing *source* package ‘colorspace’ ... 2021-05-17T17:22:14.9091893Z ** package ‘colorspace’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:14.9093489Z ** using staged installation 2021-05-17T17:22:14.9281600Z ** libs 2021-05-17T17:22:14.9329891Z 2021-05-17T17:22:14.9331688Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colorspace.c -o colorspace.o 2021-05-17T17:22:15.8297452Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:22:15.8763685Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o colorspace.so colorspace.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:22:15.8994730Z installing to /home/runner/work/_temp/Library/00LOCK-colorspace/00new/colorspace/libs 2021-05-17T17:22:15.9021204Z ** R 2021-05-17T17:22:15.9299024Z ** data 2021-05-17T17:22:15.9305602Z *** moving datasets to lazyload DB 2021-05-17T17:22:16.0492243Z ** demo 2021-05-17T17:22:16.0498899Z ** inst 2021-05-17T17:22:16.0607330Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:20.0089115Z ** help 2021-05-17T17:22:20.2017654Z *** installing help indices 2021-05-17T17:22:20.3533831Z ** building package indices 2021-05-17T17:22:20.6366983Z ** installing vignettes 2021-05-17T17:22:20.6445199Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:20.8787495Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:22:20.8970863Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:21.2127417Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:21.2186581Z * DONE (colorspace) 2021-05-17T17:22:21.4304468Z * installing *source* package ‘base64enc’ ... 2021-05-17T17:22:21.4315989Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:21.4349200Z ** using staged installation 2021-05-17T17:22:21.4452621Z ** libs 2021-05-17T17:22:21.4503138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:22:21.5587771Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T17:22:21.6335889Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T17:22:21.7079131Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:22:21.7316502Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T17:22:21.7341464Z ** R 2021-05-17T17:22:21.7362597Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:21.9969998Z ** help 2021-05-17T17:22:22.0206843Z *** installing help indices 2021-05-17T17:22:22.0377289Z ** building package indices 2021-05-17T17:22:22.2363461Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:22.4236919Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:22:22.4416122Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:22.6233438Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:22.6239252Z * DONE (base64enc) 2021-05-17T17:22:22.8633222Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T17:22:22.8650338Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:22.8681348Z ** using staged installation 2021-05-17T17:22:22.8808481Z ** R 2021-05-17T17:22:22.8873853Z ** inst 2021-05-17T17:22:22.8882466Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:23.3821881Z ** help 2021-05-17T17:22:23.4201767Z *** installing help indices 2021-05-17T17:22:23.4563385Z ** building package indices 2021-05-17T17:22:23.6734899Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:23.8600971Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:24.0502803Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:24.0512047Z * DONE (R.methodsS3) 2021-05-17T17:22:24.2714521Z * installing *source* package ‘abind’ ... 2021-05-17T17:22:24.2726446Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:24.2757746Z ** using staged installation 2021-05-17T17:22:24.2866246Z ** R 2021-05-17T17:22:24.2915931Z ** inst 2021-05-17T17:22:24.2924429Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:24.8569481Z ** help 2021-05-17T17:22:24.8826789Z *** installing help indices 2021-05-17T17:22:24.9048052Z ** building package indices 2021-05-17T17:22:25.1103565Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:25.2925467Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:25.4820826Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:25.4829640Z * DONE (abind) 2021-05-17T17:22:25.6935163Z * installing *source* package ‘bitops’ ... 2021-05-17T17:22:25.6943809Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:25.6973674Z ** using staged installation 2021-05-17T17:22:25.7066948Z ** libs 2021-05-17T17:22:25.7116234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T17:22:25.8928265Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T17:22:25.9522415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:22:25.9992819Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:22:26.0158544Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T17:22:26.0181210Z ** R 2021-05-17T17:22:26.0200739Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:26.2482020Z ** help 2021-05-17T17:22:26.2740113Z *** installing help indices 2021-05-17T17:22:26.2924420Z ** building package indices 2021-05-17T17:22:26.4887839Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:26.6706799Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:22:26.6900413Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:26.8686605Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:26.8691398Z * DONE (bitops) 2021-05-17T17:22:27.1346999Z * installing *source* package ‘viridisLite’ ... 2021-05-17T17:22:27.1389612Z ** package ‘viridisLite’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:27.1392928Z ** using staged installation 2021-05-17T17:22:27.1535450Z ** R 2021-05-17T17:22:27.1625576Z ** inst 2021-05-17T17:22:27.1634742Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:27.4301641Z ** help 2021-05-17T17:22:27.4473388Z *** installing help indices 2021-05-17T17:22:27.4642983Z *** copying figures 2021-05-17T17:22:27.4662018Z ** building package indices 2021-05-17T17:22:27.6635856Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:27.8469412Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:28.0268728Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:28.0276278Z * DONE (viridisLite) 2021-05-17T17:22:28.2378661Z * installing *source* package ‘RColorBrewer’ ... 2021-05-17T17:22:28.2386023Z ** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:28.2387162Z ** using staged installation 2021-05-17T17:22:28.2512325Z ** R 2021-05-17T17:22:28.2598010Z ** inst 2021-05-17T17:22:28.2600353Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:29.0221704Z ** help 2021-05-17T17:22:29.0409595Z *** installing help indices 2021-05-17T17:22:29.0562479Z ** building package indices 2021-05-17T17:22:29.2512719Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:29.4325699Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:29.6486320Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:29.6497616Z * DONE (RColorBrewer) 2021-05-17T17:22:29.8603393Z * installing *source* package ‘labeling’ ... 2021-05-17T17:22:29.8613285Z ** package ‘labeling’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:29.8615449Z ** using staged installation 2021-05-17T17:22:29.8722893Z ** R 2021-05-17T17:22:29.8779652Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:30.4461762Z ** help 2021-05-17T17:22:30.4808817Z *** installing help indices 2021-05-17T17:22:30.5067405Z ** building package indices 2021-05-17T17:22:30.7129125Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:30.8932130Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:31.0793169Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:31.0800219Z * DONE (labeling) 2021-05-17T17:22:31.3791933Z * installing *source* package ‘farver’ ... 2021-05-17T17:22:31.3845518Z ** package ‘farver’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:31.3848255Z ** using staged installation 2021-05-17T17:22:31.3976100Z ** libs 2021-05-17T17:22:31.4029664Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ColorSpace.cpp -o ColorSpace.o 2021-05-17T17:22:31.7889957Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Comparison.cpp -o Comparison.o 2021-05-17T17:22:31.9519964Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Conversion.cpp -o Conversion.o 2021-05-17T17:22:32.3603457Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c encode.cpp -o encode.o 2021-05-17T17:22:37.0104824Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c farver.cpp -o farver.o 2021-05-17T17:22:54.8847257Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-17T17:22:55.2537723Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:22:55.3982324Z installing to /home/runner/work/_temp/Library/00LOCK-farver/00new/farver/libs 2021-05-17T17:22:55.4062325Z ** R 2021-05-17T17:22:55.4139321Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:55.7347421Z ** help 2021-05-17T17:22:55.7642600Z *** installing help indices 2021-05-17T17:22:55.7939799Z *** copying figures 2021-05-17T17:22:55.7961858Z ** building package indices 2021-05-17T17:22:55.9981447Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:56.1854723Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:22:56.2078213Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:56.3914234Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:56.3921128Z * DONE (farver) 2021-05-17T17:22:56.6168633Z * installing *source* package ‘kirby21.base’ ... 2021-05-17T17:22:56.6180089Z ** package ‘kirby21.base’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:56.6209773Z ** using staged installation 2021-05-17T17:22:56.6331290Z ** R 2021-05-17T17:22:56.6439210Z ** data 2021-05-17T17:22:56.6442602Z *** moving datasets to lazyload DB 2021-05-17T17:22:56.6505594Z ** inst 2021-05-17T17:22:56.6512762Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:57.0021687Z ** help 2021-05-17T17:22:57.0240517Z *** installing help indices 2021-05-17T17:22:57.0476191Z ** building package indices 2021-05-17T17:22:57.2552690Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:57.4504320Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:57.6441776Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:57.6448032Z * DONE (kirby21.base) 2021-05-17T17:22:57.8636077Z * installing *source* package ‘tinytex’ ... 2021-05-17T17:22:57.8647599Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:57.8679124Z ** using staged installation 2021-05-17T17:22:57.8890163Z ** R 2021-05-17T17:22:57.8960078Z ** inst 2021-05-17T17:22:57.8968387Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:58.6080054Z ** help 2021-05-17T17:22:58.6407557Z *** installing help indices 2021-05-17T17:22:58.6689002Z ** building package indices 2021-05-17T17:22:58.8777129Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:59.0687104Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:59.2714506Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:59.2724720Z * DONE (tinytex) 2021-05-17T17:22:59.7427096Z * installing *source* package ‘matrixStats’ ... 2021-05-17T17:22:59.7524508Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T17:22:59.7581483Z ** using staged installation 2021-05-17T17:22:59.7702029Z ** libs 2021-05-17T17:22:59.7762461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T17:22:59.8173696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T17:22:59.8999912Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T17:23:00.0021591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T17:23:00.0982479Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T17:23:00.2314430Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T17:23:01.5101296Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T17:23:01.8647051Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T17:23:03.2772707Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T17:23:03.4816395Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T17:23:03.5445859Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T17:23:03.7401582Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T17:23:03.8798921Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T17:23:04.0273478Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T17:23:04.0941044Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T17:23:05.4596696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T17:23:06.4496103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T17:23:07.4452649Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T17:23:08.2862351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T17:23:09.1267442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T17:23:11.0718855Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T17:23:11.2063938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T17:23:12.1604806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T17:23:12.7256228Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T17:23:13.5861429Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T17:23:13.9861255Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T17:23:15.4908520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T17:23:27.1533990Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T17:23:27.6967621Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T17:23:28.3301626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T17:23:28.4514200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T17:23:28.5617505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T17:23:28.7991756Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T17:23:28.9679158Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T17:23:29.3777852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T17:24:21.5115069Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:24:21.6033159Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T17:24:21.6165449Z ** R 2021-05-17T17:24:21.6382646Z ** inst 2021-05-17T17:24:21.6430204Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:23.0389136Z ** help 2021-05-17T17:24:23.1767531Z *** installing help indices 2021-05-17T17:24:23.2675172Z ** building package indices 2021-05-17T17:24:23.5421932Z ** installing vignettes 2021-05-17T17:24:23.5467119Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:23.7413627Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:24:23.7665872Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:23.9702480Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:23.9724708Z * DONE (matrixStats) 2021-05-17T17:24:24.2004577Z * installing *source* package ‘matlabr’ ... 2021-05-17T17:24:24.2012845Z ** package ‘matlabr’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:24.2014233Z ** using staged installation 2021-05-17T17:24:24.2149483Z ** R 2021-05-17T17:24:24.2183775Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:24.5221703Z ** help 2021-05-17T17:24:24.5528636Z *** installing help indices 2021-05-17T17:24:24.5740986Z ** building package indices 2021-05-17T17:24:24.7804656Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:24.9810775Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:25.1790194Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:25.1795598Z * DONE (matlabr) 2021-05-17T17:24:25.5532661Z * installing *source* package ‘R.oo’ ... 2021-05-17T17:24:25.5607302Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:25.5640911Z ** using staged installation 2021-05-17T17:24:25.5777199Z ** R 2021-05-17T17:24:25.6099662Z ** inst 2021-05-17T17:24:25.6115191Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:28.4918706Z ** help 2021-05-17T17:24:28.9713607Z *** installing help indices 2021-05-17T17:24:29.3762998Z ** building package indices 2021-05-17T17:24:29.8501312Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:30.0644597Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:30.3641476Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:30.3688855Z * DONE (R.oo) 2021-05-17T17:24:30.6198006Z * installing *source* package ‘munsell’ ... 2021-05-17T17:24:30.6218284Z ** package ‘munsell’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:30.6219373Z ** using staged installation 2021-05-17T17:24:30.6324705Z ** R 2021-05-17T17:24:30.6466504Z ** inst 2021-05-17T17:24:30.6477506Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:31.2261692Z ** help 2021-05-17T17:24:31.2701880Z *** installing help indices 2021-05-17T17:24:31.3133101Z *** copying figures 2021-05-17T17:24:31.3136527Z ** building package indices 2021-05-17T17:24:31.5437277Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:31.7813706Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:32.0281386Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:32.0292459Z * DONE (munsell) 2021-05-17T17:24:32.2878407Z * installing *source* package ‘htmltools’ ... 2021-05-17T17:24:32.2901679Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:32.2934000Z ** using staged installation 2021-05-17T17:24:32.3093294Z ** libs 2021-05-17T17:24:32.3142988Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:24:32.3601135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T17:24:32.4657930Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:24:32.4903743Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T17:24:32.4905269Z ** R 2021-05-17T17:24:32.5021379Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:33.9677365Z ** help 2021-05-17T17:24:34.0472701Z *** installing help indices 2021-05-17T17:24:34.1057394Z ** building package indices 2021-05-17T17:24:34.3572560Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:34.5695390Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:24:34.5873883Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:34.8176299Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:34.8192630Z * DONE (htmltools) 2021-05-17T17:24:35.3546904Z * installing *source* package ‘R.utils’ ... 2021-05-17T17:24:35.3679945Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:35.3707369Z ** using staged installation 2021-05-17T17:24:35.3850291Z ** R 2021-05-17T17:24:35.4527130Z ** inst 2021-05-17T17:24:35.4539939Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:41.7737619Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T17:24:41.7739433Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T17:24:41.7741447Z ** help 2021-05-17T17:24:42.6467790Z *** installing help indices 2021-05-17T17:24:43.1142557Z ** building package indices 2021-05-17T17:24:43.8623934Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:44.1126218Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:44.5215746Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:44.5295639Z * DONE (R.utils) 2021-05-17T17:24:44.8677769Z * installing *source* package ‘scales’ ... 2021-05-17T17:24:44.8732782Z ** package ‘scales’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:44.8735327Z ** using staged installation 2021-05-17T17:24:44.8894888Z ** R 2021-05-17T17:24:44.9037676Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:47.5140751Z ** help 2021-05-17T17:24:47.6970165Z *** installing help indices 2021-05-17T17:24:47.8114886Z *** copying figures 2021-05-17T17:24:47.8122640Z ** building package indices 2021-05-17T17:24:48.1092560Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:48.3783700Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:48.6805556Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:48.6831581Z * DONE (scales) 2021-05-17T17:24:49.4779323Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T17:24:49.5064257Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:49.5096857Z ** using staged installation 2021-05-17T17:24:49.5378850Z ** R 2021-05-17T17:24:49.5756234Z ** inst 2021-05-17T17:24:49.5982397Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:53.1641186Z ** help 2021-05-17T17:24:53.3587325Z *** installing help indices 2021-05-17T17:24:53.5224381Z *** copying figures 2021-05-17T17:24:53.5228129Z ** building package indices 2021-05-17T17:24:53.8212127Z ** installing vignettes 2021-05-17T17:24:53.8293033Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:54.0825414Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:54.4007173Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:54.4067919Z * DONE (rmarkdown) 2021-05-17T17:24:54.4297956Z 2021-05-17T17:24:54.4299184Z The downloaded source packages are in 2021-05-17T17:24:54.4300920Z ‘/tmp/RtmpUFqVwN/downloaded_packages’ 2021-05-17T17:24:54.5226979Z Skipping install of 'kirby21.t1' from a github remote, the SHA1 (d9d2c588) has not changed since last install. 2021-05-17T17:24:54.5228741Z Use `force = TRUE` to force installation 2021-05-17T17:24:54.6056553Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-17T17:24:54.6058053Z Use `force = TRUE` to force installation 2021-05-17T17:24:54.6968595Z Skipping install of 'kirby21.fmri' from a github remote, the SHA1 (e5927312) has not changed since last install. 2021-05-17T17:24:54.6971662Z Use `force = TRUE` to force installation 2021-05-17T17:24:54.7751664Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-17T17:24:54.7752696Z Use `force = TRUE` to force installation 2021-05-17T17:25:08.5122461Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-17T17:25:08.5125735Z Use `force = TRUE` to force installation 2021-05-17T17:25:08.5136884Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-17T17:25:08.5137822Z Use `force = TRUE` to force installation 2021-05-17T17:25:08.5270027Z ##[group]Run options(width = 100) 2021-05-17T17:25:08.5270555Z options(width = 100) 2021-05-17T17:25:08.5271111Z pkgs <- installed.packages()[, "Package"] 2021-05-17T17:25:08.5271784Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-17T17:25:08.5279295Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:25:08.5279707Z env: 2021-05-17T17:25:08.5280132Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:25:08.5280591Z TIC_DEPLOY_KEY: 2021-05-17T17:25:08.5281372Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:25:08.5283062Z GITHUB_PAT: *** 2021-05-17T17:25:08.5283916Z COVERALLS_TOKEN: *** 2021-05-17T17:25:08.5284400Z continue-on-error: true 2021-05-17T17:25:08.5284860Z VDIFFR_RUN_TESTS: 2021-05-17T17:25:08.5285321Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:25:08.5285752Z TZ: UTC 2021-05-17T17:25:08.5286115Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:25:08.5286540Z NOT_CRAN: true 2021-05-17T17:25:08.5286904Z ##[endgroup] 2021-05-17T17:25:08.9991622Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-17T17:25:08.9992382Z setting value 2021-05-17T17:25:08.9993359Z version R Under development (unstable) (2021-05-15 r80301) 2021-05-17T17:25:08.9994097Z os Ubuntu 20.04.2 LTS 2021-05-17T17:25:08.9994913Z system x86_64, linux-gnu 2021-05-17T17:25:08.9995535Z ui X11 2021-05-17T17:25:08.9996115Z language (EN) 2021-05-17T17:25:08.9996920Z collate C.UTF-8 2021-05-17T17:25:08.9997761Z ctype C.UTF-8 2021-05-17T17:25:08.9998342Z tz UTC 2021-05-17T17:25:08.9999107Z date 2021-05-17 2021-05-17T17:25:08.9999428Z 2021-05-17T17:25:09.0000347Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-17T17:25:09.0001156Z package * version date lib source 2021-05-17T17:25:09.0002139Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0003150Z aghast 0.2.1 2021-05-17 [1] Github (muschellij2/aghast@0c3b853) 2021-05-17T17:25:09.0004176Z askpass 1.1 2019-01-13 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0005080Z base * 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0006004Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0006981Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0007870Z boot 1.3-28 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0008764Z brew 1.0-6 2011-04-13 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0009664Z brio 1.1.2 2021-04-23 [1] RSPM (R 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(R 4.2.0) 2021-05-17T17:25:09.0046304Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0047090Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0047861Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0048693Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0049542Z kirby21.base 1.7.3 2020-07-02 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0050496Z kirby21.fmri 1.7.0 2021-05-17 [1] Github (neuroconductor/kirby21.fmri@e592731) 2021-05-17T17:25:09.0051570Z kirby21.t1 1.7.3.2 2021-05-17 [1] Github (neuroconductor/kirby21.t1@d9d2c58) 2021-05-17T17:25:09.0052494Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0053291Z labeling 0.4.2 2020-10-20 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0054104Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0054916Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0055717Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0056526Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0057336Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0058119Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0058901Z matlabr 1.5.2 2018-08-13 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0059696Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0060498Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0071912Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0072764Z methods * 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0073557Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0074347Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0075150Z munsell 0.5.0 2018-06-12 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0076086Z neurobase 1.30.1 2021-05-17 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-17T17:25:09.0077016Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0077806Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0078616Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0079551Z oro.nifti 0.10.3 2021-05-17 [1] Github (neuroconductor/oro.nifti@bd06b05) 2021-05-17T17:25:09.0080473Z parallel 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0081283Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0082082Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0082889Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0083711Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0084518Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0085512Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0086433Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0087234Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0088003Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0088825Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0089631Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0090396Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0091178Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0091978Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0092796Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0093654Z RColorBrewer 1.1-2 2014-12-07 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0094485Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0095278Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0096089Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0096865Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0097638Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0098434Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0099325Z RNifti 1.3.1 2021-05-17 [1] Github (neuroconductor/RNifti@929106d) 2021-05-17T17:25:09.0100229Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0101212Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0102007Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0102848Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0103670Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0104473Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0105288Z scales 1.1.1 2020-05-11 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0106108Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0106926Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0110516Z splines 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0111393Z stats * 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0112210Z stats4 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0113010Z stringi 1.6.2 2021-05-17 [1] CRAN (R 4.2.0) 2021-05-17T17:25:09.0113812Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0114604Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-17T17:25:09.0115395Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0116252Z sysreqs 1.0.0.9000 2021-05-17 [1] Github (r-hub/sysreqs@f068afa) 2021-05-17T17:25:09.0117235Z tcltk 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0118122Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0118939Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0119785Z tic 0.10.0 2021-05-17 [1] Github (ropensci/tic@3b4dfb8) 2021-05-17T17:25:09.0120631Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0121435Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0122278Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0123092Z tools 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0123876Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0124691Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0125496Z utils * 4.2.0 2021-05-16 [2] local 2021-05-17T17:25:09.0126266Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0127108Z viridisLite 0.4.0 2021-04-13 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0127944Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0128743Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0129554Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0130337Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0131107Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0131898Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0132702Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0133474Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-17T17:25:09.0133781Z 2021-05-17T17:25:09.0134241Z [1] /home/runner/work/_temp/Library 2021-05-17T17:25:09.0134770Z [2] /opt/R/devel/lib/R/library 2021-05-17T17:25:09.0166684Z ##[group]Run Rscript -e 'tic::script()' 2021-05-17T17:25:09.0167254Z Rscript -e 'tic::script()' 2021-05-17T17:25:09.0167658Z ls -l check 2021-05-17T17:25:09.0211348Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T17:25:09.0211875Z env: 2021-05-17T17:25:09.0212302Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:25:09.0212751Z TIC_DEPLOY_KEY: 2021-05-17T17:25:09.0213544Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:25:09.0215280Z GITHUB_PAT: *** 2021-05-17T17:25:09.0216049Z COVERALLS_TOKEN: *** 2021-05-17T17:25:09.0216531Z continue-on-error: true 2021-05-17T17:25:09.0216995Z VDIFFR_RUN_TESTS: 2021-05-17T17:25:09.0217450Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:25:09.0217882Z TZ: UTC 2021-05-17T17:25:09.0218250Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:25:09.0218660Z NOT_CRAN: true 2021-05-17T17:25:09.0219032Z ##[endgroup] 2021-05-17T17:25:09.2955117Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:25:09.4282526Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-17T17:25:09.4283659Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-17T17:25:09.4284435Z timeout = Inf, check_dir = "check") 2021-05-17T17:25:09.4898077Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-17T17:25:09.7102906Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-17T17:25:09.7273351Z * preparing ‘spm12r’: 2021-05-17T17:25:09.7383136Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:25:09.7390590Z * running ‘cleanup’ 2021-05-17T17:25:09.8511009Z * installing the package to build vignettes 2021-05-17T17:25:16.1931144Z * creating vignettes ... OK 2021-05-17T17:25:16.2085609Z * running ‘cleanup’ 2021-05-17T17:25:16.2458702Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:25:16.2466366Z * checking for empty or unneeded directories 2021-05-17T17:25:16.2516221Z * building ‘spm12r_2.8.1.tar.gz’ 2021-05-17T17:25:16.3232440Z 2021-05-17T17:25:16.5062737Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-17T17:25:16.7261817Z * using log directory ‘/home/runner/work/spm12r/spm12r/check/spm12r.Rcheck’ 2021-05-17T17:25:16.7262937Z * using R Under development (unstable) (2021-05-15 r80301) 2021-05-17T17:25:16.7263751Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-17T17:25:16.7264508Z * using session charset: UTF-8 2021-05-17T17:25:16.8140891Z * using option ‘--as-cran’ 2021-05-17T17:25:16.8163532Z * checking for file ‘spm12r/DESCRIPTION’ ... OK 2021-05-17T17:25:16.8164685Z * checking extension type ... Package 2021-05-17T17:25:16.8165829Z * this is package ‘spm12r’ version ‘2.8.1’ 2021-05-17T17:25:16.8166827Z * package encoding: UTF-8 2021-05-17T17:25:16.8201404Z * checking package namespace information ... OK 2021-05-17T17:25:31.8450131Z * checking package dependencies ... OK 2021-05-17T17:25:31.8462028Z * checking if this is a source package ... OK 2021-05-17T17:25:31.8463092Z * checking if there is a namespace ... OK 2021-05-17T17:25:32.2536507Z * checking for executable files ... OK 2021-05-17T17:25:32.2537290Z * checking for hidden files and directories ... OK 2021-05-17T17:25:32.2552795Z * checking for portable file names ... OK 2021-05-17T17:25:32.2563891Z * checking for sufficient/correct file permissions ... OK 2021-05-17T17:25:32.2594555Z * checking serialization versions ... OK 2021-05-17T17:25:36.3228325Z * checking whether package ‘spm12r’ can be installed ... OK 2021-05-17T17:25:36.3273978Z * checking installed package size ... OK 2021-05-17T17:25:36.4036384Z * checking package directory ... OK 2021-05-17T17:25:36.4046251Z * checking for future file timestamps ... OK 2021-05-17T17:25:36.4055445Z * checking ‘build’ directory ... OK 2021-05-17T17:25:36.5715356Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:25:36.6217410Z * checking top-level files ... OK 2021-05-17T17:25:36.6218274Z * checking for left-over files ... OK 2021-05-17T17:25:36.8029686Z * checking index information ... OK 2021-05-17T17:25:36.9874421Z * checking package subdirectories ... OK 2021-05-17T17:25:37.0372085Z * checking R files for non-ASCII characters ... OK 2021-05-17T17:25:37.0985777Z * checking R files for syntax errors ... OK 2021-05-17T17:25:37.9022694Z * checking whether the package can be loaded ... OK 2021-05-17T17:25:38.6547639Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-17T17:25:39.3999008Z * checking whether the package can be unloaded cleanly ... OK 2021-05-17T17:25:40.1290098Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-17T17:25:40.9106054Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-17T17:25:41.7094016Z * checking loading without being on the library search path ... OK 2021-05-17T17:25:42.5093140Z * checking dependencies in R code ... OK 2021-05-17T17:25:43.8051360Z * checking S3 generic/method consistency ... OK 2021-05-17T17:25:44.5137375Z * checking replacement functions ... OK 2021-05-17T17:25:45.3445119Z * checking foreign function calls ... OK 2021-05-17T17:25:53.0822496Z * checking R code for possible problems ... OK 2021-05-17T17:25:53.3704839Z * checking Rd files ... OK 2021-05-17T17:25:53.4179054Z * checking Rd metadata ... OK 2021-05-17T17:25:53.5405118Z * checking Rd line widths ... OK 2021-05-17T17:25:53.6739912Z * checking Rd cross-references ... OK 2021-05-17T17:25:54.3967286Z * checking for missing documentation entries ... OK 2021-05-17T17:25:56.6182392Z * checking for code/documentation mismatches ... OK 2021-05-17T17:25:58.1686823Z * checking Rd \usage sections ... OK 2021-05-17T17:25:58.3251492Z * checking Rd contents ... OK 2021-05-17T17:25:58.4639083Z * checking for unstated dependencies in examples ... OK 2021-05-17T17:25:58.4651385Z * checking line endings in shell scripts ... OK 2021-05-17T17:25:58.4747608Z * checking installed files from ‘inst/doc’ ... OK 2021-05-17T17:25:58.4842949Z * checking files in ‘vignettes’ ... OK 2021-05-17T17:26:07.6450113Z * checking examples ... OK 2021-05-17T17:26:07.6469427Z Examples with CPU (user + system) or elapsed time > 5s 2021-05-17T17:26:07.6551924Z user system elapsed 2021-05-17T17:26:07.6556698Z install_spm12 5.765 0.964 6.98 2021-05-17T17:26:07.8404225Z * checking for unstated dependencies in vignettes ... OK 2021-05-17T17:26:07.8675837Z * checking package vignettes in ‘inst/doc’ ... OK 2021-05-17T17:26:12.3023645Z * checking re-building of vignette outputs ... OK 2021-05-17T17:26:15.0782418Z * checking PDF version of manual ... OK 2021-05-17T17:26:15.0783885Z * checking for non-standard things in the check directory ... OK 2021-05-17T17:26:15.0784669Z * checking for detritus in the temp directory ... OK 2021-05-17T17:26:15.0785153Z * DONE 2021-05-17T17:26:15.0799769Z 2021-05-17T17:26:15.0800616Z Status: OK 2021-05-17T17:26:15.0801069Z 2021-05-17T17:26:15.1755216Z ── R CMD check results ─────────────────────────────────────── spm12r 2.8.1 ──── 2021-05-17T17:26:15.1770996Z Duration: 58.8s 2021-05-17T17:26:15.1771562Z 2021-05-17T17:26:15.1783003Z 0 errors ✔ | 0 warnings ✔ | 0 notes ✔ 2021-05-17T17:26:15.1885038Z total 380 2021-05-17T17:26:15.1886813Z drwxr-xr-x 5 runner docker 4096 May 17 17:26 spm12r.Rcheck 2021-05-17T17:26:15.1889022Z -rw-r--r-- 1 runner docker 108424 May 17 17:25 spm12r_2.8.1.tar.gz 2021-05-17T17:26:15.1890437Z -rw-r--r-- 1 runner docker 272820 May 17 17:25 spm12r_2.8.1_R_x86_64-pc-linux-gnu.tar.gz 2021-05-17T17:26:15.1923472Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T17:26:15.1924220Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T17:26:15.1969160Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T17:26:15.1969650Z env: 2021-05-17T17:26:15.1970098Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:26:15.1970553Z TIC_DEPLOY_KEY: 2021-05-17T17:26:15.1971318Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:26:15.1973103Z GITHUB_PAT: *** 2021-05-17T17:26:15.1973886Z COVERALLS_TOKEN: *** 2021-05-17T17:26:15.1974345Z continue-on-error: true 2021-05-17T17:26:15.1974803Z VDIFFR_RUN_TESTS: 2021-05-17T17:26:15.1975265Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:26:15.1975677Z TZ: UTC 2021-05-17T17:26:15.1976046Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:26:15.1976432Z NOT_CRAN: true 2021-05-17T17:26:15.1976957Z ##[endgroup] 2021-05-17T17:26:15.2108133Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-17T17:26:15.2108728Z Rscript -e "tic::before_deploy()" 2021-05-17T17:26:15.2152639Z shell: /usr/bin/bash -e {0} 2021-05-17T17:26:15.2153008Z env: 2021-05-17T17:26:15.2153440Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:26:15.2153883Z TIC_DEPLOY_KEY: 2021-05-17T17:26:15.2154671Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:26:15.2155965Z GITHUB_PAT: *** 2021-05-17T17:26:15.2156718Z COVERALLS_TOKEN: *** 2021-05-17T17:26:15.2157197Z continue-on-error: true 2021-05-17T17:26:15.2157661Z VDIFFR_RUN_TESTS: 2021-05-17T17:26:15.2158112Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:26:15.2158545Z TZ: UTC 2021-05-17T17:26:15.2158906Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:26:15.2159304Z NOT_CRAN: true 2021-05-17T17:26:15.2159657Z ##[endgroup] 2021-05-17T17:26:15.4858440Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:26:15.6149732Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-17T17:26:15.6150263Z with: 2021-05-17T17:26:15.6151079Z upload_url: https://uploads.github.com/repos/neuroconductor/spm12r/releases/43074698/assets{?name,label} 2021-05-17T17:26:15.6152052Z asset_path: check/spm12r_2.8.1_R_x86_64-pc-linux-gnu.tar.gz 2021-05-17T17:26:15.6152709Z asset_name: spm12r_2.8.1_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-17T17:26:15.6153344Z asset_content_type: application/octet-stream 2021-05-17T17:26:15.6153811Z env: 2021-05-17T17:26:15.6154232Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:26:15.6154679Z TIC_DEPLOY_KEY: 2021-05-17T17:26:15.6155436Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:26:15.6156958Z GITHUB_PAT: *** 2021-05-17T17:26:15.6157819Z COVERALLS_TOKEN: *** 2021-05-17T17:26:15.6158284Z continue-on-error: true 2021-05-17T17:26:15.6158736Z VDIFFR_RUN_TESTS: 2021-05-17T17:26:15.6159237Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:26:15.6159666Z TZ: UTC 2021-05-17T17:26:15.6160027Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:26:15.6160426Z NOT_CRAN: true 2021-05-17T17:26:15.6161307Z GITHUB_TOKEN: *** 2021-05-17T17:26:15.6161681Z ##[endgroup] 2021-05-17T17:26:16.2014325Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-17T17:26:16.2014865Z Rscript -e "tic::deploy()" 2021-05-17T17:26:16.2058052Z shell: /usr/bin/bash -e {0} 2021-05-17T17:26:16.2058433Z env: 2021-05-17T17:26:16.2058853Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:26:16.2059308Z TIC_DEPLOY_KEY: 2021-05-17T17:26:16.2060081Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:26:16.2062003Z GITHUB_PAT: *** 2021-05-17T17:26:16.2062855Z COVERALLS_TOKEN: *** 2021-05-17T17:26:16.2063318Z continue-on-error: true 2021-05-17T17:26:16.2063776Z VDIFFR_RUN_TESTS: 2021-05-17T17:26:16.2064247Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:26:16.2064673Z TZ: UTC 2021-05-17T17:26:16.2065049Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:26:16.2065443Z NOT_CRAN: true 2021-05-17T17:26:16.2065802Z ##[endgroup] 2021-05-17T17:26:16.4762382Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:26:16.6016270Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-17T17:26:16.6016875Z Rscript -e "tic::after_deploy()" 2021-05-17T17:26:16.6061757Z shell: /usr/bin/bash -e {0} 2021-05-17T17:26:16.6062150Z env: 2021-05-17T17:26:16.6062581Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:26:16.6063073Z TIC_DEPLOY_KEY: 2021-05-17T17:26:16.6063871Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:26:16.6065336Z GITHUB_PAT: *** 2021-05-17T17:26:16.6066146Z COVERALLS_TOKEN: *** 2021-05-17T17:26:16.6066643Z continue-on-error: true 2021-05-17T17:26:16.6067103Z VDIFFR_RUN_TESTS: 2021-05-17T17:26:16.6067573Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:26:16.6067990Z TZ: UTC 2021-05-17T17:26:16.6068492Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:26:16.6068890Z NOT_CRAN: true 2021-05-17T17:26:16.6069237Z ##[endgroup] 2021-05-17T17:26:16.8760586Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:26:17.1648729Z Post job cleanup. 2021-05-17T17:26:17.2081556Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T17:26:17.2232699Z Post job cleanup. 2021-05-17T17:26:17.3190417Z [command]/usr/bin/git version 2021-05-17T17:26:17.3248457Z git version 2.31.1 2021-05-17T17:26:17.3281203Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T17:26:17.3332325Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T17:26:17.3577830Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T17:26:17.3618022Z http.https://github.com/.extraheader 2021-05-17T17:26:17.3627847Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-17T17:26:17.3676440Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T17:26:17.3975650Z Cleaning up orphan processes