2021-06-03T19:00:40.3856673Z ##[section]Starting: Request a runner to run this job
2021-06-03T19:00:40.9836015Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04'
2021-06-03T19:00:41.1030376Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04'
2021-06-03T19:00:41.2065200Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04'
2021-06-03T19:00:41.4095750Z ##[section]Finishing: Request a runner to run this job
2021-06-03T19:00:48.8385423Z Current runner version: '2.278.0'
2021-06-03T19:00:48.8408978Z ##[group]Operating System
2021-06-03T19:00:48.8409850Z Ubuntu
2021-06-03T19:00:48.8410366Z 20.04.2
2021-06-03T19:00:48.8410799Z LTS
2021-06-03T19:00:48.8411311Z ##[endgroup]
2021-06-03T19:00:48.8411939Z ##[group]Virtual Environment
2021-06-03T19:00:48.8412569Z Environment: ubuntu-20.04
2021-06-03T19:00:48.8413191Z Version: 20210531.0
2021-06-03T19:00:48.8414174Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210531.0/images/linux/Ubuntu2004-README.md
2021-06-03T19:00:48.8415552Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210531.0
2021-06-03T19:00:48.8416474Z ##[endgroup]
2021-06-03T19:00:48.8418318Z ##[group]GITHUB_TOKEN Permissions
2021-06-03T19:00:48.8419493Z Actions: write
2021-06-03T19:00:48.8420073Z Checks: write
2021-06-03T19:00:48.8420625Z Contents: write
2021-06-03T19:00:48.8421161Z Deployments: write
2021-06-03T19:00:48.8421827Z Issues: write
2021-06-03T19:00:48.8422400Z Metadata: read
2021-06-03T19:00:48.8422964Z Packages: write
2021-06-03T19:00:48.8423508Z PullRequests: write
2021-06-03T19:00:48.8424178Z RepositoryProjects: write
2021-06-03T19:00:48.8424869Z SecurityEvents: write
2021-06-03T19:00:48.8425434Z Statuses: write
2021-06-03T19:00:48.8426087Z ##[endgroup]
2021-06-03T19:00:48.8428816Z Prepare workflow directory
2021-06-03T19:00:48.9365952Z Prepare all required actions
2021-06-03T19:00:48.9376255Z Getting action download info
2021-06-03T19:00:49.3729082Z Download action repository 'actions/checkout@v2'
2021-06-03T19:00:51.0387068Z Download action repository 'r-lib/actions@master'
2021-06-03T19:00:51.5639103Z Download action repository 'adigherman/actions@master'
2021-06-03T19:00:53.8856552Z Download action repository 'msys2/setup-msys2@v2'
2021-06-03T19:00:54.1504778Z Download action repository 'actions/cache@v1'
2021-06-03T19:00:54.4129236Z Download action repository 'actions/upload-artifact@master'
2021-06-03T19:00:54.5596412Z Download action repository 'actions/upload-release-asset@v1.0.1'
2021-06-03T19:00:54.9755426Z ##[group]Run actions/checkout@v2
2021-06-03T19:00:54.9755992Z with:
2021-06-03T19:00:54.9756499Z   repository: neuroconductor/neuroCombatData
2021-06-03T19:00:54.9757526Z   token: ***
2021-06-03T19:00:54.9757898Z   ssh-strict: true
2021-06-03T19:00:54.9758363Z   persist-credentials: true
2021-06-03T19:00:54.9758822Z   clean: true
2021-06-03T19:00:54.9759180Z   fetch-depth: 1
2021-06-03T19:00:54.9759657Z   lfs: false
2021-06-03T19:00:54.9760023Z   submodules: false
2021-06-03T19:00:54.9760368Z env:
2021-06-03T19:00:54.9760785Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:00:54.9761219Z   TIC_DEPLOY_KEY: 
2021-06-03T19:00:54.9761993Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:00:54.9763168Z   GITHUB_PAT: ***
2021-06-03T19:00:54.9763927Z   COVERALLS_TOKEN: ***
2021-06-03T19:00:54.9764382Z   continue-on-error: true
2021-06-03T19:00:54.9764833Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:00:54.9765204Z ##[endgroup]
2021-06-03T19:00:55.1933504Z Syncing repository: neuroconductor/neuroCombatData
2021-06-03T19:00:55.1934359Z ##[group]Getting Git version info
2021-06-03T19:00:55.1935414Z Working directory is '/home/runner/work/neuroCombatData/neuroCombatData'
2021-06-03T19:00:55.2074819Z [command]/usr/bin/git version
2021-06-03T19:00:55.2237522Z git version 2.31.1
2021-06-03T19:00:55.2239367Z ##[endgroup]
2021-06-03T19:00:55.2240395Z Deleting the contents of '/home/runner/work/neuroCombatData/neuroCombatData'
2021-06-03T19:00:55.2248986Z ##[group]Initializing the repository
2021-06-03T19:00:55.2252720Z [command]/usr/bin/git init /home/runner/work/neuroCombatData/neuroCombatData
2021-06-03T19:00:55.2321976Z hint: Using 'master' as the name for the initial branch. This default branch name
2021-06-03T19:00:55.2323158Z hint: is subject to change. To configure the initial branch name to use in all
2021-06-03T19:00:55.2324119Z hint: of your new repositories, which will suppress this warning, call:
2021-06-03T19:00:55.2325087Z hint: 
2021-06-03T19:00:55.2328504Z hint: 	git config --global init.defaultBranch <name>
2021-06-03T19:00:55.2329043Z hint: 
2021-06-03T19:00:55.2329717Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and
2021-06-03T19:00:55.2330645Z hint: 'development'. The just-created branch can be renamed via this command:
2021-06-03T19:00:55.2331207Z hint: 
2021-06-03T19:00:55.2331699Z hint: 	git branch -m <name>
2021-06-03T19:00:55.2332436Z Initialized empty Git repository in /home/runner/work/neuroCombatData/neuroCombatData/.git/
2021-06-03T19:00:55.2335540Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/neuroCombatData
2021-06-03T19:00:55.2372675Z ##[endgroup]
2021-06-03T19:00:55.2373974Z ##[group]Disabling automatic garbage collection
2021-06-03T19:00:55.2382973Z [command]/usr/bin/git config --local gc.auto 0
2021-06-03T19:00:55.2412399Z ##[endgroup]
2021-06-03T19:00:55.2431472Z ##[group]Setting up auth
2021-06-03T19:00:55.2432394Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-06-03T19:00:55.2460849Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-06-03T19:00:55.2824358Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-06-03T19:00:55.2863617Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-06-03T19:00:55.6227767Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic ***
2021-06-03T19:00:55.6228943Z ##[endgroup]
2021-06-03T19:00:55.6229517Z ##[group]Fetching the repository
2021-06-03T19:00:55.6231822Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +a68005cec61d0f6252d7c9da963f8760bd809747:refs/tags/0.99.0.s
2021-06-03T19:00:55.6233119Z remote: Enumerating objects: 27, done.        
2021-06-03T19:00:55.6233754Z remote: Counting objects:   3% (1/27)        
2021-06-03T19:00:55.6234341Z remote: Counting objects:   7% (2/27)        
2021-06-03T19:00:55.6234916Z remote: Counting objects:  11% (3/27)        
2021-06-03T19:00:55.6235504Z remote: Counting objects:  14% (4/27)        
2021-06-03T19:00:55.6236089Z remote: Counting objects:  18% (5/27)        
2021-06-03T19:00:55.6236660Z remote: Counting objects:  22% (6/27)        
2021-06-03T19:00:55.6237244Z remote: Counting objects:  25% (7/27)        
2021-06-03T19:00:55.6237823Z remote: Counting objects:  29% (8/27)        
2021-06-03T19:00:55.6238393Z remote: Counting objects:  33% (9/27)        
2021-06-03T19:00:55.6238976Z remote: Counting objects:  37% (10/27)        
2021-06-03T19:00:55.6239565Z remote: Counting objects:  40% (11/27)        
2021-06-03T19:00:55.6240135Z remote: Counting objects:  44% (12/27)        
2021-06-03T19:00:55.6240734Z remote: Counting objects:  48% (13/27)        
2021-06-03T19:00:55.6241318Z remote: Counting objects:  51% (14/27)        
2021-06-03T19:00:55.6241904Z remote: Counting objects:  55% (15/27)        
2021-06-03T19:00:55.6242470Z remote: Counting objects:  59% (16/27)        
2021-06-03T19:00:55.6243052Z remote: Counting objects:  62% (17/27)        
2021-06-03T19:00:55.6243629Z remote: Counting objects:  66% (18/27)        
2021-06-03T19:00:55.6244196Z remote: Counting objects:  70% (19/27)        
2021-06-03T19:00:55.6244781Z remote: Counting objects:  74% (20/27)        
2021-06-03T19:00:55.6245362Z remote: Counting objects:  77% (21/27)        
2021-06-03T19:00:55.6246114Z remote: Counting objects:  81% (22/27)        
2021-06-03T19:00:55.6246696Z remote: Counting objects:  85% (23/27)        
2021-06-03T19:00:55.6247278Z remote: Counting objects:  88% (24/27)        
2021-06-03T19:00:55.6247846Z remote: Counting objects:  92% (25/27)        
2021-06-03T19:00:55.6248557Z remote: Counting objects:  96% (26/27)        
2021-06-03T19:00:55.6249140Z remote: Counting objects: 100% (27/27)        
2021-06-03T19:00:55.6249731Z remote: Counting objects: 100% (27/27), done.        
2021-06-03T19:00:55.6250366Z remote: Compressing objects:   4% (1/21)        
2021-06-03T19:00:55.6250999Z remote: Compressing objects:   9% (2/21)        
2021-06-03T19:00:55.6251613Z remote: Compressing objects:  14% (3/21)        
2021-06-03T19:00:55.6252245Z remote: Compressing objects:  19% (4/21)        
2021-06-03T19:00:55.6252872Z remote: Compressing objects:  23% (5/21)        
2021-06-03T19:00:55.6253487Z remote: Compressing objects:  28% (6/21)        
2021-06-03T19:00:55.6254112Z remote: Compressing objects:  33% (7/21)        
2021-06-03T19:00:55.6254741Z remote: Compressing objects:  38% (8/21)        
2021-06-03T19:00:55.6255353Z remote: Compressing objects:  42% (9/21)        
2021-06-03T19:00:55.6255984Z remote: Compressing objects:  47% (10/21)        
2021-06-03T19:00:55.6256623Z remote: Compressing objects:  52% (11/21)        
2021-06-03T19:00:55.6257242Z remote: Compressing objects:  57% (12/21)        
2021-06-03T19:00:55.6257944Z remote: Compressing objects:  61% (13/21)        
2021-06-03T19:00:55.6258571Z remote: Compressing objects:  66% (14/21)        
2021-06-03T19:00:55.6259181Z remote: Compressing objects:  71% (15/21)        
2021-06-03T19:00:55.6259814Z remote: Compressing objects:  76% (16/21)        
2021-06-03T19:00:55.6260440Z remote: Compressing objects:  80% (17/21)        
2021-06-03T19:00:55.6261055Z remote: Compressing objects:  85% (18/21)        
2021-06-03T19:00:55.6261686Z remote: Compressing objects:  90% (19/21)        
2021-06-03T19:00:55.6262319Z remote: Compressing objects:  95% (20/21)        
2021-06-03T19:00:55.6262930Z remote: Compressing objects: 100% (21/21)        
2021-06-03T19:00:55.6263588Z remote: Compressing objects: 100% (21/21), done.        
2021-06-03T19:00:55.6264660Z remote: Total 27 (delta 1), reused 25 (delta 1), pack-reused 0        
2021-06-03T19:00:55.6265626Z From https://github.com/neuroconductor/neuroCombatData
2021-06-03T19:00:55.6266775Z  * [new ref]         a68005cec61d0f6252d7c9da963f8760bd809747 -> 0.99.0.s
2021-06-03T19:00:55.6267543Z ##[endgroup]
2021-06-03T19:00:55.6268117Z ##[group]Determining the checkout info
2021-06-03T19:00:55.6268671Z ##[endgroup]
2021-06-03T19:00:55.6269188Z ##[group]Checking out the ref
2021-06-03T19:00:55.6270045Z [command]/usr/bin/git checkout --progress --force refs/tags/0.99.0.s
2021-06-03T19:00:55.6270873Z Note: switching to 'refs/tags/0.99.0.s'.
2021-06-03T19:00:55.6271286Z 
2021-06-03T19:00:55.6272081Z You are in 'detached HEAD' state. You can look around, make experimental
2021-06-03T19:00:55.6272930Z changes and commit them, and you can discard any commits you make in this
2021-06-03T19:00:55.6273945Z state without impacting any branches by switching back to a branch.
2021-06-03T19:00:55.6274469Z 
2021-06-03T19:00:55.6275059Z If you want to create a new branch to retain commits you create, you may
2021-06-03T19:00:55.6276035Z do so (now or later) by using -c with the switch command. Example:
2021-06-03T19:00:55.6276521Z 
2021-06-03T19:00:55.6277098Z   git switch -c <new-branch-name>
2021-06-03T19:00:55.6277529Z 
2021-06-03T19:00:55.6277993Z Or undo this operation with:
2021-06-03T19:00:55.6278381Z 
2021-06-03T19:00:55.6278902Z   git switch -
2021-06-03T19:00:55.6279242Z 
2021-06-03T19:00:55.6279915Z Turn off this advice by setting config variable advice.detachedHead to false
2021-06-03T19:00:55.6280508Z 
2021-06-03T19:00:55.6280927Z HEAD is now at a68005c Version id 200 stable
2021-06-03T19:00:55.6281473Z ##[endgroup]
2021-06-03T19:00:55.6282154Z [command]/usr/bin/git log -1 --format='%H'
2021-06-03T19:00:55.6283009Z 'a68005cec61d0f6252d7c9da963f8760bd809747'
2021-06-03T19:00:55.6374767Z ##[group]Run r-lib/actions/setup-r@master
2021-06-03T19:00:55.6375227Z with:
2021-06-03T19:00:55.6375567Z   r-version: devel
2021-06-03T19:00:55.6375930Z   Ncpus: 1
2021-06-03T19:00:55.6376319Z   crayon.enabled: NULL
2021-06-03T19:00:55.6376913Z   remove-openmp-macos: true
2021-06-03T19:00:55.6377444Z   http-user-agent: default
2021-06-03T19:00:55.6377878Z   install-r: true
2021-06-03T19:00:55.6378423Z   windows-path-include-mingw: true
2021-06-03T19:00:55.6379004Z   update-rtools: false
2021-06-03T19:00:55.6379374Z env:
2021-06-03T19:00:55.6379789Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:00:55.6380226Z   TIC_DEPLOY_KEY: 
2021-06-03T19:00:55.6380994Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:00:55.6382269Z   GITHUB_PAT: ***
2021-06-03T19:00:55.6383019Z   COVERALLS_TOKEN: ***
2021-06-03T19:00:55.6383486Z   continue-on-error: true
2021-06-03T19:00:55.6383936Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:00:55.6384296Z ##[endgroup]
2021-06-03T19:00:57.0839081Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis
2021-06-03T19:00:58.9342067Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease
2021-06-03T19:00:58.9344648Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB]
2021-06-03T19:00:58.9350010Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB]
2021-06-03T19:00:58.9580942Z Get:4 http://security.ubuntu.com/ubuntu focal-security InRelease [114 kB]
2021-06-03T19:00:59.0473087Z Get:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB]
2021-06-03T19:00:59.0816230Z Get:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB]
2021-06-03T19:00:59.1492755Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [1012 kB]
2021-06-03T19:00:59.1675147Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [227 kB]
2021-06-03T19:00:59.1690903Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.5 kB]
2021-06-03T19:00:59.1698060Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [241 kB]
2021-06-03T19:00:59.1724738Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [35.5 kB]
2021-06-03T19:00:59.1730914Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 c-n-f Metadata [456 B]
2021-06-03T19:00:59.1734453Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [779 kB]
2021-06-03T19:00:59.1864748Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [168 kB]
2021-06-03T19:00:59.1882282Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.6 kB]
2021-06-03T19:00:59.1889291Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 Packages [23.4 kB]
2021-06-03T19:00:59.1896555Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse Translation-en [5888 B]
2021-06-03T19:00:59.1902720Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal-updates/multiverse amd64 c-n-f Metadata [648 B]
2021-06-03T19:00:59.3237277Z Hit:19 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease
2021-06-03T19:00:59.3779761Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [687 kB]
2021-06-03T19:00:59.4491975Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [138 kB]
2021-06-03T19:00:59.4499594Z Get:22 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7780 B]
2021-06-03T19:00:59.4501281Z Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [222 kB]
2021-06-03T19:00:59.4520127Z Get:24 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [32.7 kB]
2021-06-03T19:00:59.4526111Z Get:25 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 c-n-f Metadata [456 B]
2021-06-03T19:00:59.4529723Z Get:26 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [588 kB]
2021-06-03T19:00:59.4678024Z Get:27 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [94.6 kB]
2021-06-03T19:00:59.4679912Z Get:28 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.5 kB]
2021-06-03T19:00:59.4681482Z Get:29 http://security.ubuntu.com/ubuntu focal-security/multiverse amd64 Packages [19.9 kB]
2021-06-03T19:00:59.5253326Z Get:30 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [74.7 kB]
2021-06-03T19:01:03.8325344Z Fetched 4758 kB in 1s (5180 kB/s)
2021-06-03T19:01:04.5432077Z Reading package lists...
2021-06-03T19:01:04.5632182Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq
2021-06-03T19:01:06.0644472Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts
2021-06-03T19:01:06.1243221Z Reading package lists...
2021-06-03T19:01:06.2710796Z Building dependency tree...
2021-06-03T19:01:06.2725429Z Reading state information...
2021-06-03T19:01:06.4085101Z The following additional packages will be installed:
2021-06-03T19:01:06.4091626Z   dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl
2021-06-03T19:01:06.4094837Z   libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl
2021-06-03T19:01:06.4096917Z   libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl
2021-06-03T19:01:06.4106286Z   libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
2021-06-03T19:01:06.4108360Z   libconst-fast-perl libcontextual-return-perl libcpanel-json-xs-perl
2021-06-03T19:01:06.4110308Z   libcroco3 libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl
2021-06-03T19:01:06.4112055Z   libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl
2021-06-03T19:01:06.4113919Z   libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl
2021-06-03T19:01:06.4115718Z   libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl
2021-06-03T19:01:06.4117061Z   libfile-which-perl libfont-ttf-perl libfuture-perl
2021-06-03T19:01:06.4119706Z   libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl
2021-06-03T19:01:06.4121323Z   libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl
2021-06-03T19:01:06.4122770Z   libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl
2021-06-03T19:01:06.4124132Z   libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl
2021-06-03T19:01:06.4125471Z   liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl
2021-06-03T19:01:06.4126883Z   liblist-someutils-perl liblist-someutils-xs-perl
2021-06-03T19:01:06.4128347Z   liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl
2021-06-03T19:01:06.4129928Z   libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl
2021-06-03T19:01:06.4131307Z   libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl
2021-06-03T19:01:06.4132551Z   libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl
2021-06-03T19:01:06.4133798Z   libnumber-compare-perl libnumber-range-perl libobject-id-perl
2021-06-03T19:01:06.4135218Z   libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl
2021-06-03T19:01:06.4136759Z   libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl
2021-06-03T19:01:06.4138151Z   libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl
2021-06-03T19:01:06.4139504Z   libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl
2021-06-03T19:01:06.4140927Z   libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl
2021-06-03T19:01:06.4142363Z   libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl
2021-06-03T19:01:06.4143814Z   libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl
2021-06-03T19:01:06.4145266Z   libstrictures-perl libstring-copyright-perl libstring-escape-perl
2021-06-03T19:01:06.4146909Z   libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl
2021-06-03T19:01:06.4148472Z   libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
2021-06-03T19:01:06.4150055Z   libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl
2021-06-03T19:01:06.4151583Z   libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl
2021-06-03T19:01:06.4152906Z   libtype-tiny-perl libtype-tiny-xs-perl libunicode-utf8-perl
2021-06-03T19:01:06.4154270Z   libvariable-magic-perl libwant-perl libxml-writer-perl libyaml-libyaml-perl
2021-06-03T19:01:06.4155610Z   licensecheck lintian patchutils python3-gpg python3-magic python3-unidiff
2021-06-03T19:01:06.4156493Z   python3-xdg t1utils wdiff
2021-06-03T19:01:06.4156990Z Suggested packages:
2021-06-03T19:01:06.4157817Z   debtags adequate autopkgtest bls-standalone bsd-mailx | mailx
2021-06-03T19:01:06.4158963Z   check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope
2021-06-03T19:01:06.4160212Z   disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl
2021-06-03T19:01:06.4161474Z   libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts
2021-06-03T19:01:06.4162728Z   mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring
2021-06-03T19:01:06.4163897Z   equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc
2021-06-03T19:01:06.4165067Z   autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl
2021-06-03T19:01:06.4168617Z   libscalar-number-perl libbareword-filehandles-perl libindirect-perl
2021-06-03T19:01:06.4170167Z   libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl
2021-06-03T19:01:06.4171483Z   binutils-multiarch libtext-template-perl wdiff-doc
2021-06-03T19:01:07.0405674Z The following NEW packages will be installed:
2021-06-03T19:01:07.0409040Z   dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian
2021-06-03T19:01:07.0410579Z   libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl
2021-06-03T19:01:07.0412328Z   libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
2021-06-03T19:01:07.0414119Z   libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl
2021-06-03T19:01:07.0415721Z   libclone-perl libconst-fast-perl libcontextual-return-perl
2021-06-03T19:01:07.0417049Z   libcpanel-json-xs-perl libcroco3 libdata-optlist-perl
2021-06-03T19:01:07.0418520Z   libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl
2021-06-03T19:01:07.0420180Z   libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl
2021-06-03T19:01:07.0421650Z   libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl
2021-06-03T19:01:07.0423031Z   libfile-find-rule-perl libfile-homedir-perl libfile-which-perl
2021-06-03T19:01:07.0424520Z   libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl
2021-06-03T19:01:07.0425998Z   libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl
2021-06-03T19:01:07.0427589Z   libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl
2021-06-03T19:01:07.0430484Z   libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl
2021-06-03T19:01:07.0431708Z   libipc-run-perl libjson-maybexs-perl liblinux-epoll-perl
2021-06-03T19:01:07.0432977Z   liblist-compare-perl liblist-moreutils-perl liblist-someutils-perl
2021-06-03T19:01:07.0434429Z   liblist-someutils-xs-perl liblog-any-adapter-screen-perl liblog-any-perl
2021-06-03T19:01:07.0435920Z   libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
2021-06-03T19:01:07.0437299Z   libmoox-aliases-perl libmoox-struct-perl libnamespace-clean-perl
2021-06-03T19:01:07.0438931Z   libnet-dns-perl libnet-dns-sec-perl libnet-domain-tld-perl libnet-ip-perl
2021-06-03T19:01:07.0440274Z   libnet-libidn-perl libnumber-compare-perl libnumber-range-perl
2021-06-03T19:01:07.0441579Z   libobject-id-perl libpackage-stash-perl libpackage-stash-xs-perl
2021-06-03T19:01:07.0442959Z   libparams-classify-perl libparams-util-perl libparams-validate-perl
2021-06-03T19:01:07.0444530Z   libpath-iterator-rule-perl libpath-tiny-perl libperl4-corelibs-perl
2021-06-03T19:01:07.0447195Z   libperlio-gzip-perl libpod-constants-perl libqpdf26 libre-engine-re2-perl
2021-06-03T19:01:07.0448475Z   libreadonly-perl libref-util-perl libref-util-xs-perl
2021-06-03T19:01:07.0449933Z   libregexp-pattern-license-perl libregexp-pattern-perl librole-tiny-perl
2021-06-03T19:01:07.0451355Z   libsereal-decoder-perl libsereal-encoder-perl libsereal-perl
2021-06-03T19:01:07.0452597Z   libsort-key-perl libsort-versions-perl libstrictures-perl
2021-06-03T19:01:07.0453956Z   libstring-copyright-perl libstring-escape-perl libstring-shellquote-perl
2021-06-03T19:01:07.0455520Z   libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl
2021-06-03T19:01:07.0457125Z   libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl
2021-06-03T19:01:07.0458391Z   libterm-readkey-perl libtest-fatal-perl libtest-refcount-perl
2021-06-03T19:01:07.0459622Z   libtext-glob-perl libtext-levenshtein-perl libtype-tiny-perl
2021-06-03T19:01:07.0460866Z   libtype-tiny-xs-perl libunicode-utf8-perl libvariable-magic-perl
2021-06-03T19:01:07.0462114Z   libwant-perl libxml-writer-perl libyaml-libyaml-perl licensecheck lintian
2021-06-03T19:01:07.0463275Z   patchutils python3-gpg python3-magic python3-unidiff python3-xdg qpdf
2021-06-03T19:01:07.0463913Z   t1utils wdiff
2021-06-03T19:01:07.0464430Z 0 upgraded, 126 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:01:07.0465139Z Need to get 8451 kB of archives.
2021-06-03T19:01:07.0465716Z After this operation, 31.7 MB of additional disk space will be used.
2021-06-03T19:01:07.0466876Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB]
2021-06-03T19:01:07.0468379Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB]
2021-06-03T19:01:07.0469862Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB]
2021-06-03T19:01:07.0471315Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB]
2021-06-03T19:01:07.0472727Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB]
2021-06-03T19:01:07.0474296Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB]
2021-06-03T19:01:07.0475983Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB]
2021-06-03T19:01:07.0477655Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB]
2021-06-03T19:01:07.0479341Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB]
2021-06-03T19:01:07.0480998Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB]
2021-06-03T19:01:07.0482589Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB]
2021-06-03T19:01:07.0484096Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB]
2021-06-03T19:01:07.0485663Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB]
2021-06-03T19:01:07.0487132Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB]
2021-06-03T19:01:07.0488575Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB]
2021-06-03T19:01:07.0489957Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB]
2021-06-03T19:01:07.0491288Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB]
2021-06-03T19:01:07.0492593Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB]
2021-06-03T19:01:07.0493881Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB]
2021-06-03T19:01:07.0495217Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB]
2021-06-03T19:01:07.0496650Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB]
2021-06-03T19:01:07.0497852Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB]
2021-06-03T19:01:07.0499185Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB]
2021-06-03T19:01:07.0500530Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB]
2021-06-03T19:01:07.0501859Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB]
2021-06-03T19:01:07.0503228Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB]
2021-06-03T19:01:07.0504661Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB]
2021-06-03T19:01:07.0506125Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB]
2021-06-03T19:01:07.0507619Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB]
2021-06-03T19:01:07.0509174Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB]
2021-06-03T19:01:07.0510834Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB]
2021-06-03T19:01:07.0512599Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B]
2021-06-03T19:01:07.0514308Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB]
2021-06-03T19:01:07.0515918Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB]
2021-06-03T19:01:07.0517469Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB]
2021-06-03T19:01:07.0519048Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB]
2021-06-03T19:01:07.0520550Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB]
2021-06-03T19:01:07.0521994Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB]
2021-06-03T19:01:07.0523497Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB]
2021-06-03T19:01:07.0524972Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B]
2021-06-03T19:01:07.0526700Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB]
2021-06-03T19:01:07.0528180Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B]
2021-06-03T19:01:07.0529601Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB]
2021-06-03T19:01:07.0531113Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB]
2021-06-03T19:01:07.0533474Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB]
2021-06-03T19:01:07.0535237Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B]
2021-06-03T19:01:07.0536888Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB]
2021-06-03T19:01:07.0538765Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B]
2021-06-03T19:01:07.0540878Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB]
2021-06-03T19:01:07.0542442Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB]
2021-06-03T19:01:07.0712837Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB]
2021-06-03T19:01:07.0790223Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB]
2021-06-03T19:01:07.0888678Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB]
2021-06-03T19:01:07.0975048Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB]
2021-06-03T19:01:07.1527216Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B]
2021-06-03T19:01:07.1575892Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B]
2021-06-03T19:01:07.1621505Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB]
2021-06-03T19:01:07.1728856Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB]
2021-06-03T19:01:07.1779417Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB]
2021-06-03T19:01:07.1968643Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB]
2021-06-03T19:01:07.2053074Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB]
2021-06-03T19:01:07.2137571Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB]
2021-06-03T19:01:07.2245964Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B]
2021-06-03T19:01:07.2465186Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB]
2021-06-03T19:01:07.2819062Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B]
2021-06-03T19:01:07.2919963Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB]
2021-06-03T19:01:07.3012205Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB]
2021-06-03T19:01:07.3102006Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB]
2021-06-03T19:01:07.3156055Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB]
2021-06-03T19:01:07.3234513Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB]
2021-06-03T19:01:07.3278270Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB]
2021-06-03T19:01:07.3279898Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB]
2021-06-03T19:01:07.3328415Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB]
2021-06-03T19:01:07.3411599Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB]
2021-06-03T19:01:07.3613365Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB]
2021-06-03T19:01:07.3726289Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB]
2021-06-03T19:01:07.3794471Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB]
2021-06-03T19:01:07.3873456Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB]
2021-06-03T19:01:07.4044556Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB]
2021-06-03T19:01:07.4130525Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB]
2021-06-03T19:01:07.4212899Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB]
2021-06-03T19:01:07.4219442Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB]
2021-06-03T19:01:07.4276894Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB]
2021-06-03T19:01:07.4378317Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB]
2021-06-03T19:01:07.4468661Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB]
2021-06-03T19:01:07.4553378Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B]
2021-06-03T19:01:07.4597487Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB]
2021-06-03T19:01:07.4685005Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB]
2021-06-03T19:01:07.4774541Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB]
2021-06-03T19:01:07.4878553Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB]
2021-06-03T19:01:07.4990302Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B]
2021-06-03T19:01:07.5079581Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB]
2021-06-03T19:01:07.5161343Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB]
2021-06-03T19:01:07.5251764Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB]
2021-06-03T19:01:07.5341854Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB]
2021-06-03T19:01:07.5392263Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB]
2021-06-03T19:01:07.5471964Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB]
2021-06-03T19:01:07.5778964Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB]
2021-06-03T19:01:07.5854671Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB]
2021-06-03T19:01:07.5931844Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB]
2021-06-03T19:01:07.5985418Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB]
2021-06-03T19:01:07.6014137Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB]
2021-06-03T19:01:07.6037852Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB]
2021-06-03T19:01:07.6044137Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB]
2021-06-03T19:01:07.6061427Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB]
2021-06-03T19:01:07.6082506Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B]
2021-06-03T19:01:07.6096116Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB]
2021-06-03T19:01:07.6106656Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B]
2021-06-03T19:01:07.6115244Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB]
2021-06-03T19:01:07.6131630Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB]
2021-06-03T19:01:07.6138653Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB]
2021-06-03T19:01:07.6150472Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB]
2021-06-03T19:01:07.6156894Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB]
2021-06-03T19:01:07.6165147Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B]
2021-06-03T19:01:07.6172211Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB]
2021-06-03T19:01:07.6181539Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB]
2021-06-03T19:01:07.6189268Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB]
2021-06-03T19:01:07.6197729Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB]
2021-06-03T19:01:07.6205673Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB]
2021-06-03T19:01:07.6213224Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB]
2021-06-03T19:01:07.6220948Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB]
2021-06-03T19:01:07.6229787Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB]
2021-06-03T19:01:07.6332208Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B]
2021-06-03T19:01:07.6338202Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB]
2021-06-03T19:01:07.6345576Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB]
2021-06-03T19:01:07.6421329Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B]
2021-06-03T19:01:08.2919670Z Fetched 8451 kB in 1s (7294 kB/s)
2021-06-03T19:01:08.3246511Z Selecting previously unselected package dctrl-tools.
2021-06-03T19:01:08.3387811Z (Reading database ... 
2021-06-03T19:01:08.3388872Z (Reading database ... 5%
2021-06-03T19:01:08.3389764Z (Reading database ... 10%
2021-06-03T19:01:08.3390242Z (Reading database ... 15%
2021-06-03T19:01:08.3390770Z (Reading database ... 20%
2021-06-03T19:01:08.3391243Z (Reading database ... 25%
2021-06-03T19:01:08.3391701Z (Reading database ... 30%
2021-06-03T19:01:08.3392172Z (Reading database ... 35%
2021-06-03T19:01:08.3392632Z (Reading database ... 40%
2021-06-03T19:01:08.3393131Z (Reading database ... 45%
2021-06-03T19:01:08.3393603Z (Reading database ... 50%
2021-06-03T19:01:08.3723675Z (Reading database ... 55%
2021-06-03T19:01:08.4053676Z (Reading database ... 60%
2021-06-03T19:01:08.4377877Z (Reading database ... 65%
2021-06-03T19:01:08.4849817Z (Reading database ... 70%
2021-06-03T19:01:08.5281103Z (Reading database ... 75%
2021-06-03T19:01:08.5798208Z (Reading database ... 80%
2021-06-03T19:01:08.6500136Z (Reading database ... 85%
2021-06-03T19:01:08.6985583Z (Reading database ... 90%
2021-06-03T19:01:08.7723152Z (Reading database ... 95%
2021-06-03T19:01:08.7724230Z (Reading database ... 100%
2021-06-03T19:01:08.7724979Z (Reading database ... 230729 files and directories currently installed.)
2021-06-03T19:01:08.7811300Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ...
2021-06-03T19:01:08.7907099Z Unpacking dctrl-tools (2.24-3) ...
2021-06-03T19:01:08.8167475Z Selecting previously unselected package libfile-which-perl.
2021-06-03T19:01:08.8373290Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ...
2021-06-03T19:01:08.8389154Z Unpacking libfile-which-perl (1.23-1) ...
2021-06-03T19:01:08.8647208Z Selecting previously unselected package libfile-homedir-perl.
2021-06-03T19:01:08.8828159Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb ...
2021-06-03T19:01:08.8829623Z Unpacking libfile-homedir-perl (1.004-1) ...
2021-06-03T19:01:08.9114247Z Selecting previously unselected package libio-pty-perl.
2021-06-03T19:01:08.9323623Z Preparing to unpack .../003-libio-pty-perl_1%3a1.12-1_amd64.deb ...
2021-06-03T19:01:08.9342826Z Unpacking libio-pty-perl (1:1.12-1) ...
2021-06-03T19:01:08.9646409Z Selecting previously unselected package libipc-run-perl.
2021-06-03T19:01:08.9812954Z Preparing to unpack .../004-libipc-run-perl_20180523.0-2_all.deb ...
2021-06-03T19:01:08.9827500Z Unpacking libipc-run-perl (20180523.0-2) ...
2021-06-03T19:01:09.0167983Z Selecting previously unselected package libclass-method-modifiers-perl.
2021-06-03T19:01:09.0322774Z Preparing to unpack .../005-libclass-method-modifiers-perl_2.13-1_all.deb ...
2021-06-03T19:01:09.0338835Z Unpacking libclass-method-modifiers-perl (2.13-1) ...
2021-06-03T19:01:09.0607117Z Selecting previously unselected package libb-hooks-op-check-perl.
2021-06-03T19:01:09.0760871Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ...
2021-06-03T19:01:09.0771896Z Unpacking libb-hooks-op-check-perl (0.22-1build2) ...
2021-06-03T19:01:09.1008816Z Selecting previously unselected package libdynaloader-functions-perl.
2021-06-03T19:01:09.1215082Z Preparing to unpack .../007-libdynaloader-functions-perl_0.003-1_all.deb ...
2021-06-03T19:01:09.1228740Z Unpacking libdynaloader-functions-perl (0.003-1) ...
2021-06-03T19:01:09.1530116Z Selecting previously unselected package libdevel-callchecker-perl.
2021-06-03T19:01:09.1673868Z Preparing to unpack .../008-libdevel-callchecker-perl_0.008-1ubuntu1_amd64.deb ...
2021-06-03T19:01:09.1687603Z Unpacking libdevel-callchecker-perl (0.008-1ubuntu1) ...
2021-06-03T19:01:09.1967457Z Selecting previously unselected package libparams-classify-perl.
2021-06-03T19:01:09.2164618Z Preparing to unpack .../009-libparams-classify-perl_0.015-1build2_amd64.deb ...
2021-06-03T19:01:09.2179380Z Unpacking libparams-classify-perl (0.015-1build2) ...
2021-06-03T19:01:09.2488039Z Selecting previously unselected package libmodule-runtime-perl.
2021-06-03T19:01:09.2607778Z Preparing to unpack .../010-libmodule-runtime-perl_0.016-1_all.deb ...
2021-06-03T19:01:09.2624645Z Unpacking libmodule-runtime-perl (0.016-1) ...
2021-06-03T19:01:09.2835757Z Selecting previously unselected package libimport-into-perl.
2021-06-03T19:01:09.3047783Z Preparing to unpack .../011-libimport-into-perl_1.002005-1_all.deb ...
2021-06-03T19:01:09.3057723Z Unpacking libimport-into-perl (1.002005-1) ...
2021-06-03T19:01:09.3252626Z Selecting previously unselected package librole-tiny-perl.
2021-06-03T19:01:09.3467036Z Preparing to unpack .../012-librole-tiny-perl_2.001004-1_all.deb ...
2021-06-03T19:01:09.3477295Z Unpacking librole-tiny-perl (2.001004-1) ...
2021-06-03T19:01:09.3727808Z Selecting previously unselected package libstrictures-perl.
2021-06-03T19:01:09.3891664Z Preparing to unpack .../013-libstrictures-perl_2.000006-1_all.deb ...
2021-06-03T19:01:09.3900683Z Unpacking libstrictures-perl (2.000006-1) ...
2021-06-03T19:01:09.4167134Z Selecting previously unselected package libsub-quote-perl.
2021-06-03T19:01:09.4313349Z Preparing to unpack .../014-libsub-quote-perl_2.006006-1_all.deb ...
2021-06-03T19:01:09.4320583Z Unpacking libsub-quote-perl (2.006006-1) ...
2021-06-03T19:01:09.4567042Z Selecting previously unselected package libmoo-perl.
2021-06-03T19:01:09.4739479Z Preparing to unpack .../015-libmoo-perl_2.003006-1_all.deb ...
2021-06-03T19:01:09.4748494Z Unpacking libmoo-perl (2.003006-1) ...
2021-06-03T19:01:09.5006747Z Selecting previously unselected package patchutils.
2021-06-03T19:01:09.5181062Z Preparing to unpack .../016-patchutils_0.3.4-2_amd64.deb ...
2021-06-03T19:01:09.5188806Z Unpacking patchutils (0.3.4-2) ...
2021-06-03T19:01:09.5527440Z Selecting previously unselected package wdiff.
2021-06-03T19:01:09.5692289Z Preparing to unpack .../017-wdiff_1.2.2-2build1_amd64.deb ...
2021-06-03T19:01:09.5699129Z Unpacking wdiff (1.2.2-2build1) ...
2021-06-03T19:01:09.6047548Z Selecting previously unselected package devscripts.
2021-06-03T19:01:09.6210016Z Preparing to unpack .../018-devscripts_2.20.2ubuntu2_amd64.deb ...
2021-06-03T19:01:09.6422822Z Unpacking devscripts (2.20.2ubuntu2) ...
2021-06-03T19:01:09.7566439Z Selecting previously unselected package diffstat.
2021-06-03T19:01:09.7732709Z Preparing to unpack .../019-diffstat_1.63-1_amd64.deb ...
2021-06-03T19:01:09.7741916Z Unpacking diffstat (1.63-1) ...
2021-06-03T19:01:09.8046974Z Selecting previously unselected package python3-gpg.
2021-06-03T19:01:09.8182154Z Preparing to unpack .../020-python3-gpg_1.13.1-7ubuntu2_amd64.deb ...
2021-06-03T19:01:09.8190654Z Unpacking python3-gpg (1.13.1-7ubuntu2) ...
2021-06-03T19:01:09.8648092Z Selecting previously unselected package dput.
2021-06-03T19:01:09.8812834Z Preparing to unpack .../021-dput_1.0.3ubuntu1_all.deb ...
2021-06-03T19:01:09.8883037Z Unpacking dput (1.0.3ubuntu1) ...
2021-06-03T19:01:09.9207900Z Selecting previously unselected package gdebi-core.
2021-06-03T19:01:09.9329817Z Preparing to unpack .../022-gdebi-core_0.9.5.7+nmu3_all.deb ...
2021-06-03T19:01:09.9349514Z Unpacking gdebi-core (0.9.5.7+nmu3) ...
2021-06-03T19:01:09.9825900Z Selecting previously unselected package libcroco3:amd64.
2021-06-03T19:01:10.0009192Z Preparing to unpack .../023-libcroco3_0.6.13-1_amd64.deb ...
2021-06-03T19:01:10.0027259Z Unpacking libcroco3:amd64 (0.6.13-1) ...
2021-06-03T19:01:10.0446859Z Selecting previously unselected package gettext.
2021-06-03T19:01:10.0608444Z Preparing to unpack .../024-gettext_0.19.8.1-10build1_amd64.deb ...
2021-06-03T19:01:10.0616567Z Unpacking gettext (0.19.8.1-10build1) ...
2021-06-03T19:01:10.1569568Z Selecting previously unselected package intltool-debian.
2021-06-03T19:01:10.1738374Z Preparing to unpack .../025-intltool-debian_0.35.0+20060710.5_all.deb ...
2021-06-03T19:01:10.1749859Z Unpacking intltool-debian (0.35.0+20060710.5) ...
2021-06-03T19:01:10.1981855Z Selecting previously unselected package libapt-pkg-perl.
2021-06-03T19:01:10.2168254Z Preparing to unpack .../026-libapt-pkg-perl_0.1.36build3_amd64.deb ...
2021-06-03T19:01:10.2176153Z Unpacking libapt-pkg-perl (0.1.36build3) ...
2021-06-03T19:01:10.2425293Z Selecting previously unselected package libarchive-zip-perl.
2021-06-03T19:01:10.2638880Z Preparing to unpack .../027-libarchive-zip-perl_1.67-2_all.deb ...
2021-06-03T19:01:10.2647211Z Unpacking libarchive-zip-perl (1.67-2) ...
2021-06-03T19:01:10.3008203Z Selecting previously unselected package libarray-intspan-perl.
2021-06-03T19:01:10.3179539Z Preparing to unpack .../028-libarray-intspan-perl_2.003-1_all.deb ...
2021-06-03T19:01:10.3187150Z Unpacking libarray-intspan-perl (2.003-1) ...
2021-06-03T19:01:10.3447238Z Selecting previously unselected package libasync-mergepoint-perl.
2021-06-03T19:01:10.3587685Z Preparing to unpack .../029-libasync-mergepoint-perl_0.04-2_all.deb ...
2021-06-03T19:01:10.3598091Z Unpacking libasync-mergepoint-perl (0.04-2) ...
2021-06-03T19:01:10.3821565Z Selecting previously unselected package libmodule-implementation-perl.
2021-06-03T19:01:10.4001635Z Preparing to unpack .../030-libmodule-implementation-perl_0.09-1_all.deb ...
2021-06-03T19:01:10.4007700Z Unpacking libmodule-implementation-perl (0.09-1) ...
2021-06-03T19:01:10.4207276Z Selecting previously unselected package libsub-exporter-progressive-perl.
2021-06-03T19:01:10.4410474Z Preparing to unpack .../031-libsub-exporter-progressive-perl_0.001013-1_all.deb ...
2021-06-03T19:01:10.4415632Z Unpacking libsub-exporter-progressive-perl (0.001013-1) ...
2021-06-03T19:01:10.4646837Z Selecting previously unselected package libvariable-magic-perl.
2021-06-03T19:01:10.4809466Z Preparing to unpack .../032-libvariable-magic-perl_0.62-1build2_amd64.deb ...
2021-06-03T19:01:10.4816488Z Unpacking libvariable-magic-perl (0.62-1build2) ...
2021-06-03T19:01:10.5247530Z Selecting previously unselected package libb-hooks-endofscope-perl.
2021-06-03T19:01:10.5422203Z Preparing to unpack .../033-libb-hooks-endofscope-perl_0.24-1_all.deb ...
2021-06-03T19:01:10.5434541Z Unpacking libb-hooks-endofscope-perl (0.24-1) ...
2021-06-03T19:01:10.5716188Z Selecting previously unselected package libcapture-tiny-perl.
2021-06-03T19:01:10.6003908Z Preparing to unpack .../034-libcapture-tiny-perl_0.48-1_all.deb ...
2021-06-03T19:01:10.6005027Z Unpacking libcapture-tiny-perl (0.48-1) ...
2021-06-03T19:01:10.6208157Z Selecting previously unselected package libclass-xsaccessor-perl.
2021-06-03T19:01:10.6355831Z Preparing to unpack .../035-libclass-xsaccessor-perl_1.19-3build3_amd64.deb ...
2021-06-03T19:01:10.6363339Z Unpacking libclass-xsaccessor-perl (1.19-3build3) ...
2021-06-03T19:01:10.6561795Z Selecting previously unselected package libclone-perl.
2021-06-03T19:01:10.6774100Z Preparing to unpack .../036-libclone-perl_0.43-2_amd64.deb ...
2021-06-03T19:01:10.6782662Z Unpacking libclone-perl (0.43-2) ...
2021-06-03T19:01:10.6967111Z Selecting previously unselected package libparams-util-perl.
2021-06-03T19:01:10.7167812Z Preparing to unpack .../037-libparams-util-perl_1.07-3build5_amd64.deb ...
2021-06-03T19:01:10.7175832Z Unpacking libparams-util-perl (1.07-3build5) ...
2021-06-03T19:01:10.7434456Z Selecting previously unselected package libsub-install-perl.
2021-06-03T19:01:10.7645156Z Preparing to unpack .../038-libsub-install-perl_0.928-1_all.deb ...
2021-06-03T19:01:10.7654548Z Unpacking libsub-install-perl (0.928-1) ...
2021-06-03T19:01:10.7886784Z Selecting previously unselected package libdata-optlist-perl.
2021-06-03T19:01:10.8045036Z Preparing to unpack .../039-libdata-optlist-perl_0.110-1_all.deb ...
2021-06-03T19:01:10.8053442Z Unpacking libdata-optlist-perl (0.110-1) ...
2021-06-03T19:01:10.8312201Z Selecting previously unselected package libsub-exporter-perl.
2021-06-03T19:01:10.8522976Z Preparing to unpack .../040-libsub-exporter-perl_0.987-1_all.deb ...
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2021-06-03T19:01:10.8759122Z Selecting previously unselected package libconst-fast-perl.
2021-06-03T19:01:10.8969061Z Preparing to unpack .../041-libconst-fast-perl_0.014-1_all.deb ...
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2021-06-03T19:01:10.9164061Z Selecting previously unselected package libwant-perl.
2021-06-03T19:01:10.9376998Z Preparing to unpack .../042-libwant-perl_0.29-1build4_amd64.deb ...
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2021-06-03T19:01:10.9595086Z Selecting previously unselected package libcontextual-return-perl.
2021-06-03T19:01:10.9807846Z Preparing to unpack .../043-libcontextual-return-perl_0.004014-2_all.deb ...
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2021-06-03T19:01:11.0035332Z Selecting previously unselected package libcpanel-json-xs-perl.
2021-06-03T19:01:11.0246600Z Preparing to unpack .../044-libcpanel-json-xs-perl_4.19-1build1_amd64.deb ...
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2021-06-03T19:01:11.0529792Z Selecting previously unselected package libdigest-bubblebabble-perl.
2021-06-03T19:01:11.0744114Z Preparing to unpack .../045-libdigest-bubblebabble-perl_0.02-2_all.deb ...
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2021-06-03T19:01:11.0952663Z Selecting previously unselected package libdigest-hmac-perl.
2021-06-03T19:01:11.1158967Z Preparing to unpack .../046-libdigest-hmac-perl_1.03+dfsg-2_all.deb ...
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2021-06-03T19:01:11.1351858Z Selecting previously unselected package libdistro-info-perl.
2021-06-03T19:01:11.1563422Z Preparing to unpack .../047-libdistro-info-perl_0.23ubuntu1_all.deb ...
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2021-06-03T19:01:11.1843440Z Selecting previously unselected package libnet-ip-perl.
2021-06-03T19:01:11.1968335Z Preparing to unpack .../048-libnet-ip-perl_1.26-2_all.deb ...
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2021-06-03T19:01:11.2239643Z Selecting previously unselected package libnet-dns-perl.
2021-06-03T19:01:11.2400740Z Preparing to unpack .../049-libnet-dns-perl_1.22-1_all.deb ...
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2021-06-03T19:01:11.2967464Z Selecting previously unselected package libnet-domain-tld-perl.
2021-06-03T19:01:11.3116063Z Preparing to unpack .../050-libnet-domain-tld-perl_1.75-1_all.deb ...
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2021-06-03T19:01:11.3335344Z Selecting previously unselected package libemail-valid-perl.
2021-06-03T19:01:11.3548497Z Preparing to unpack .../051-libemail-valid-perl_1.202-1_all.deb ...
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2021-06-03T19:01:11.3749180Z Selecting previously unselected package libexporter-tiny-perl.
2021-06-03T19:01:11.3962570Z Preparing to unpack .../052-libexporter-tiny-perl_1.002001-1_all.deb ...
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2021-06-03T19:01:11.4179127Z Selecting previously unselected package libfile-chdir-perl.
2021-06-03T19:01:11.4392749Z Preparing to unpack .../053-libfile-chdir-perl_0.1008-1_all.deb ...
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2021-06-03T19:01:11.4647024Z Selecting previously unselected package libnumber-compare-perl.
2021-06-03T19:01:11.4813500Z Preparing to unpack .../054-libnumber-compare-perl_0.03-1_all.deb ...
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2021-06-03T19:01:11.5007885Z Selecting previously unselected package libtext-glob-perl.
2021-06-03T19:01:11.5224149Z Preparing to unpack .../055-libtext-glob-perl_0.10-1_all.deb ...
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2021-06-03T19:01:11.5586521Z Selecting previously unselected package libfile-find-rule-perl.
2021-06-03T19:01:11.5802056Z Preparing to unpack .../056-libfile-find-rule-perl_0.34-1_all.deb ...
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2021-06-03T19:01:11.6026563Z Selecting previously unselected package libio-string-perl.
2021-06-03T19:01:11.6245434Z Preparing to unpack .../057-libio-string-perl_1.08-3_all.deb ...
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2021-06-03T19:01:11.6527379Z Selecting previously unselected package libfont-ttf-perl.
2021-06-03T19:01:11.6684970Z Preparing to unpack .../058-libfont-ttf-perl_1.06-1_all.deb ...
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2021-06-03T19:01:11.7179161Z Selecting previously unselected package libfuture-perl.
2021-06-03T19:01:11.7398763Z Preparing to unpack .../059-libfuture-perl_0.43-1_all.deb ...
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2021-06-03T19:01:11.7687111Z Selecting previously unselected package libparams-validate-perl.
2021-06-03T19:01:11.7866532Z Preparing to unpack .../060-libparams-validate-perl_1.29-3_amd64.deb ...
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2021-06-03T19:01:11.8128976Z Selecting previously unselected package libgetopt-long-descriptive-perl.
2021-06-03T19:01:11.8317747Z Preparing to unpack .../061-libgetopt-long-descriptive-perl_0.104-1_all.deb ...
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2021-06-03T19:01:11.8607009Z Selecting previously unselected package libsort-versions-perl.
2021-06-03T19:01:11.8757772Z Preparing to unpack .../062-libsort-versions-perl_1.62-1_all.deb ...
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2021-06-03T19:01:11.9001316Z Selecting previously unselected package libgit-wrapper-perl.
2021-06-03T19:01:11.9189336Z Preparing to unpack .../063-libgit-wrapper-perl_0.048-1_all.deb ...
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2021-06-03T19:01:11.9483106Z Selecting previously unselected package libhttp-tiny-multipart-perl.
2021-06-03T19:01:11.9632930Z Preparing to unpack .../064-libhttp-tiny-multipart-perl_0.08-1_all.deb ...
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2021-06-03T19:01:11.9850677Z Selecting previously unselected package libio-prompter-perl.
2021-06-03T19:01:12.0065106Z Preparing to unpack .../065-libio-prompter-perl_0.004015-1_all.deb ...
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2021-06-03T19:01:12.0406865Z Selecting previously unselected package liblog-any-perl.
2021-06-03T19:01:12.0552495Z Preparing to unpack .../066-liblog-any-perl_1.708-1_all.deb ...
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2021-06-03T19:01:12.0797053Z Selecting previously unselected package liblog-any-adapter-screen-perl.
2021-06-03T19:01:12.1011281Z Preparing to unpack .../067-liblog-any-adapter-screen-perl_0.140-1_all.deb ...
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2021-06-03T19:01:12.1221919Z Selecting previously unselected package libpackage-stash-perl.
2021-06-03T19:01:12.1436177Z Preparing to unpack .../068-libpackage-stash-perl_0.38-1_all.deb ...
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2021-06-03T19:01:12.1652949Z Selecting previously unselected package libsub-identify-perl.
2021-06-03T19:01:12.1870239Z Preparing to unpack .../069-libsub-identify-perl_0.14-1build2_amd64.deb ...
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2021-06-03T19:01:12.2158388Z Selecting previously unselected package libsub-name-perl.
2021-06-03T19:01:12.2295577Z Preparing to unpack .../070-libsub-name-perl_0.26-1_amd64.deb ...
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2021-06-03T19:01:12.2567010Z Selecting previously unselected package libnamespace-clean-perl.
2021-06-03T19:01:12.2718822Z Preparing to unpack .../071-libnamespace-clean-perl_0.27-1_all.deb ...
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2021-06-03T19:01:12.2940595Z Selecting previously unselected package libpath-tiny-perl.
2021-06-03T19:01:12.3153707Z Preparing to unpack .../072-libpath-tiny-perl_0.108-1_all.deb ...
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2021-06-03T19:01:12.3488187Z Selecting previously unselected package libtype-tiny-perl.
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2021-06-03T19:01:12.4136924Z Selecting previously unselected package libgitlab-api-v4-perl.
2021-06-03T19:01:12.4353541Z Preparing to unpack .../074-libgitlab-api-v4-perl_0.25-1_all.deb ...
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2021-06-03T19:01:12.4632114Z Selecting previously unselected package libhash-fieldhash-perl.
2021-06-03T19:01:12.4851871Z Preparing to unpack .../075-libhash-fieldhash-perl_0.15-1build2_amd64.deb ...
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2021-06-03T19:01:12.5167039Z Selecting previously unselected package libstruct-dumb-perl.
2021-06-03T19:01:12.5290066Z Preparing to unpack .../076-libstruct-dumb-perl_0.09-1_all.deb ...
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2021-06-03T19:01:12.5490679Z Selecting previously unselected package libio-async-perl.
2021-06-03T19:01:12.5705889Z Preparing to unpack .../077-libio-async-perl_0.75-1_all.deb ...
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2021-06-03T19:01:12.6132986Z Selecting previously unselected package liblinux-epoll-perl.
2021-06-03T19:01:12.6350505Z Preparing to unpack .../078-liblinux-epoll-perl_0.017-1_amd64.deb ...
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2021-06-03T19:01:12.6647282Z Selecting previously unselected package libio-async-loop-epoll-perl.
2021-06-03T19:01:12.6812725Z Preparing to unpack .../079-libio-async-loop-epoll-perl_0.20-1_all.deb ...
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2021-06-03T19:01:12.7087148Z Selecting previously unselected package libjson-maybexs-perl.
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2021-06-03T19:01:12.7476415Z Selecting previously unselected package liblist-compare-perl.
2021-06-03T19:01:12.7691413Z Preparing to unpack .../081-liblist-compare-perl_0.53-1_all.deb ...
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2021-06-03T19:01:12.8047314Z Selecting previously unselected package liblist-moreutils-perl.
2021-06-03T19:01:12.8194661Z Preparing to unpack .../082-liblist-moreutils-perl_0.416-1build5_amd64.deb ...
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2021-06-03T19:01:12.8567628Z Selecting previously unselected package liblist-someutils-perl.
2021-06-03T19:01:12.8778555Z Preparing to unpack .../083-liblist-someutils-perl_0.58-1_all.deb ...
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2021-06-03T19:01:12.9025620Z Selecting previously unselected package liblist-someutils-xs-perl.
2021-06-03T19:01:12.9238249Z Preparing to unpack .../084-liblist-someutils-xs-perl_0.58-2_amd64.deb ...
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2021-06-03T19:01:12.9510598Z Selecting previously unselected package libmoox-aliases-perl.
2021-06-03T19:01:12.9681438Z Preparing to unpack .../085-libmoox-aliases-perl_0.001006-1_all.deb ...
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2021-06-03T19:01:13.0087719Z Selecting previously unselected package libobject-id-perl.
2021-06-03T19:01:13.0269937Z Preparing to unpack .../086-libobject-id-perl_0.1.2-2ubuntu1_all.deb ...
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2021-06-03T19:01:13.0472353Z Selecting previously unselected package libmoox-struct-perl.
2021-06-03T19:01:13.0686355Z Preparing to unpack .../087-libmoox-struct-perl_0.017-1_all.deb ...
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2021-06-03T19:01:13.1017477Z Selecting previously unselected package libnet-dns-sec-perl.
2021-06-03T19:01:13.1229450Z Preparing to unpack .../088-libnet-dns-sec-perl_1.15-1_amd64.deb ...
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2021-06-03T19:01:13.1526862Z Selecting previously unselected package libnet-libidn-perl.
2021-06-03T19:01:13.1697622Z Preparing to unpack .../089-libnet-libidn-perl_0.12.ds-3build2_amd64.deb ...
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2021-06-03T19:01:13.1915661Z Selecting previously unselected package libnumber-range-perl.
2021-06-03T19:01:13.2130797Z Preparing to unpack .../090-libnumber-range-perl_0.12-1_all.deb ...
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2021-06-03T19:01:13.2340664Z Selecting previously unselected package libpackage-stash-xs-perl.
2021-06-03T19:01:13.2548746Z Preparing to unpack .../091-libpackage-stash-xs-perl_0.29-1build1_amd64.deb ...
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2021-06-03T19:01:13.2757718Z Selecting previously unselected package libpath-iterator-rule-perl.
2021-06-03T19:01:13.2971930Z Preparing to unpack .../092-libpath-iterator-rule-perl_1.014-1_all.deb ...
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2021-06-03T19:01:13.3211865Z Selecting previously unselected package libperl4-corelibs-perl.
2021-06-03T19:01:13.3425953Z Preparing to unpack .../093-libperl4-corelibs-perl_0.004-2_all.deb ...
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2021-06-03T19:01:13.3703198Z Selecting previously unselected package libperlio-gzip-perl.
2021-06-03T19:01:13.3914640Z Preparing to unpack .../094-libperlio-gzip-perl_0.19-1build5_amd64.deb ...
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2021-06-03T19:01:13.4166908Z Selecting previously unselected package libpod-constants-perl.
2021-06-03T19:01:13.4331947Z Preparing to unpack .../095-libpod-constants-perl_0.19-1_all.deb ...
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2021-06-03T19:01:13.4560703Z Selecting previously unselected package libqpdf26:amd64.
2021-06-03T19:01:13.4774369Z Preparing to unpack .../096-libqpdf26_9.1.1-1build1_amd64.deb ...
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2021-06-03T19:01:13.5407304Z Selecting previously unselected package libre-engine-re2-perl.
2021-06-03T19:01:13.5567272Z Preparing to unpack .../097-libre-engine-re2-perl_0.13-5_amd64.deb ...
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2021-06-03T19:01:13.5808117Z Selecting previously unselected package libreadonly-perl.
2021-06-03T19:01:13.5989807Z Preparing to unpack .../098-libreadonly-perl_2.050-2_all.deb ...
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2021-06-03T19:01:13.6288505Z Selecting previously unselected package libref-util-perl.
2021-06-03T19:01:13.6421504Z Preparing to unpack .../099-libref-util-perl_0.204-1_all.deb ...
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2021-06-03T19:01:13.6689617Z Selecting previously unselected package libref-util-xs-perl.
2021-06-03T19:01:13.6872089Z Preparing to unpack .../100-libref-util-xs-perl_0.117-1build2_amd64.deb ...
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2021-06-03T19:01:13.7244743Z Selecting previously unselected package libregexp-pattern-license-perl.
2021-06-03T19:01:13.7460833Z Preparing to unpack .../101-libregexp-pattern-license-perl_3.2.0-1_all.deb ...
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2021-06-03T19:01:13.7767171Z Selecting previously unselected package libregexp-pattern-perl.
2021-06-03T19:01:13.7923167Z Preparing to unpack .../102-libregexp-pattern-perl_0.2.12-1_all.deb ...
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2021-06-03T19:01:13.8130712Z Selecting previously unselected package libsereal-decoder-perl.
2021-06-03T19:01:13.8344842Z Preparing to unpack .../103-libsereal-decoder-perl_4.011+ds-1build1_amd64.deb ...
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2021-06-03T19:01:13.8727051Z Selecting previously unselected package libsereal-encoder-perl.
2021-06-03T19:01:13.8851385Z Preparing to unpack .../104-libsereal-encoder-perl_4.011+ds-1build1_amd64.deb ...
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2021-06-03T19:01:13.9167759Z Selecting previously unselected package libsereal-perl.
2021-06-03T19:01:13.9345147Z Preparing to unpack .../105-libsereal-perl_4.011-1_all.deb ...
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2021-06-03T19:01:13.9545343Z Selecting previously unselected package libsort-key-perl.
2021-06-03T19:01:13.9757348Z Preparing to unpack .../106-libsort-key-perl_1.33-2build2_amd64.deb ...
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2021-06-03T19:01:14.0047802Z Selecting previously unselected package libstring-copyright-perl.
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2021-06-03T19:01:14.0410983Z Selecting previously unselected package libstring-escape-perl.
2021-06-03T19:01:14.0627931Z Preparing to unpack .../108-libstring-escape-perl_2010.002-2_all.deb ...
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2021-06-03T19:01:15.8467460Z Setting up libfile-chdir-perl (0.1008-1) ...
2021-06-03T19:01:15.8490024Z Setting up libpath-tiny-perl (0.108-1) ...
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2021-06-03T19:01:16.0119535Z Setting up python3-magic (2:0.4.15-3) ...
2021-06-03T19:01:16.1504421Z Setting up libperlio-gzip-perl (0.19-1build5) ...
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2021-06-03T19:01:37.9287770Z  Selecting previously unselected package r-devel.
2021-06-03T19:01:38.0250572Z (Reading database ... 235740 files and directories currently installed.)
2021-06-03T19:01:38.0334612Z Preparing to unpack .../work/_temp/r-devel_1_amd64.deb ...
2021-06-03T19:01:38.0346095Z Unpacking r-devel (1) ...
2021-06-03T19:01:38.7636312Z Setting up r-devel (1) ...
2021-06-03T19:01:38.7892415Z 
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2021-06-03T19:01:38.7893687Z Reading state information... Done
2021-06-03T19:01:38.8103717Z [command]/usr/bin/sudo ln -sf /opt/R/devel/bin/R /usr/local/bin/R
2021-06-03T19:01:38.8205435Z [command]/usr/bin/sudo ln -sf /opt/R/devel/bin/Rscript /usr/local/bin/Rscript
2021-06-03T19:01:38.8450385Z ##[group]Run r-lib/actions/setup-tinytex@master
2021-06-03T19:01:38.8450870Z env:
2021-06-03T19:01:38.8451397Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:01:38.8451853Z   TIC_DEPLOY_KEY: 
2021-06-03T19:01:38.8452617Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:01:38.8454228Z   GITHUB_PAT: ***
2021-06-03T19:01:38.8454996Z   COVERALLS_TOKEN: ***
2021-06-03T19:01:38.8455453Z   continue-on-error: true
2021-06-03T19:01:38.8455905Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:01:38.8456353Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:01:38.8456782Z   TZ: UTC
2021-06-03T19:01:38.8457156Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:01:38.8457543Z   NOT_CRAN: true
2021-06-03T19:01:38.8457900Z ##[endgroup]
2021-06-03T19:01:38.8933635Z [command]sudo apt-get install -y texinfo
2021-06-03T19:01:39.3508762Z Reading package lists...
2021-06-03T19:01:39.4966647Z Building dependency tree...
2021-06-03T19:01:39.4985229Z Reading state information...
2021-06-03T19:01:39.7012608Z texinfo is already the newest version (6.7.0.dfsg.2-5).
2021-06-03T19:01:39.7048418Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:01:40.0136077Z [command]sh /home/runner/work/_temp/install-unx.sh
2021-06-03T19:01:40.0328978Z --2021-06-03 19:01:40--  https://yihui.org/tinytex/TinyTeX-1.tar.gz
2021-06-03T19:01:40.0440515Z Resolving yihui.org (yihui.org)... 76.223.126.88
2021-06-03T19:01:40.0498078Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected.
2021-06-03T19:01:40.0760785Z HTTP request sent, awaiting response... 301 Moved Permanently
2021-06-03T19:01:40.0763082Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following]
2021-06-03T19:01:40.0768082Z --2021-06-03 19:01:40--  https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu
2021-06-03T19:01:40.1369331Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243
2021-06-03T19:01:40.2020621Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected.
2021-06-03T19:01:40.4261851Z HTTP request sent, awaiting response... 302 Found
2021-06-03T19:01:40.4267046Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1587/6s6tteapi4k7f57e/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=v4Sv2Nuo%2BQ8vCBRi24lOgZiw8NWxA7cIfSP6WGbXciM%3D&st=2021-06-03T19%3A00%3A40Z&se=2021-06-03T19%3A06%3A40Z&sp=r [following]
2021-06-03T19:01:40.4271273Z --2021-06-03 19:01:40--  https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1587/6s6tteapi4k7f57e/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=v4Sv2Nuo%2BQ8vCBRi24lOgZiw8NWxA7cIfSP6WGbXciM%3D&st=2021-06-03T19%3A00%3A40Z&se=2021-06-03T19%3A06%3A40Z&sp=r
2021-06-03T19:01:40.4539021Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196
2021-06-03T19:01:40.5153679Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected.
2021-06-03T19:01:40.7910586Z HTTP request sent, awaiting response... 200 OK
2021-06-03T19:01:40.7912046Z Length: 67552518 (64M) [application/octet-stream]
2021-06-03T19:01:40.7913852Z Saving to: ‘TinyTeX.tar.gz’
2021-06-03T19:01:41.3412310Z 
2021-06-03T19:01:42.9198725Z      0K ........ ........ ........ ........ 49% 15.7M 2s
2021-06-03T19:01:45.1253680Z  32768K ........ ........ ........ ........ 99% 14.3M 0s
2021-06-03T19:01:45.1254692Z  65536K                                    100% 6.30M=4.3s
2021-06-03T19:01:45.1254990Z 
2021-06-03T19:01:45.1256365Z 2021-06-03 19:01:45 (14.9 MB/s) - ‘TinyTeX.tar.gz’ saved [67552518/67552518]
2021-06-03T19:01:45.1256819Z 
2021-06-03T19:01:46.6604598Z tlmgr: setting option sys_bin to /home/runner/bin.
2021-06-03T19:01:46.6606226Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb
2021-06-03T19:01:46.9280301Z ##[group]Run tlmgr update --self
2021-06-03T19:01:46.9280846Z tlmgr update --self
2021-06-03T19:01:46.9281685Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext
2021-06-03T19:01:46.9282642Z tlmgr update --all
2021-06-03T19:01:46.9324759Z shell: /usr/bin/bash -e {0}
2021-06-03T19:01:46.9325149Z env:
2021-06-03T19:01:46.9325798Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:01:46.9326260Z   TIC_DEPLOY_KEY: 
2021-06-03T19:01:46.9327039Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:01:46.9328697Z   GITHUB_PAT: ***
2021-06-03T19:01:46.9329470Z   COVERALLS_TOKEN: ***
2021-06-03T19:01:46.9329942Z   continue-on-error: true
2021-06-03T19:01:46.9330384Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:01:46.9330851Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:01:46.9331268Z   TZ: UTC
2021-06-03T19:01:46.9331648Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:01:46.9332097Z   NOT_CRAN: true
2021-06-03T19:01:46.9332465Z ##[endgroup]
2021-06-03T19:01:48.0495605Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified)
2021-06-03T19:01:48.0498067Z tlmgr: no self-updates for tlmgr available
2021-06-03T19:01:49.2362502Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified)
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2021-06-03T19:01:55.1023880Z running mktexlsr ...
2021-06-03T19:01:55.1752502Z done running mktexlsr.
2021-06-03T19:01:55.2022763Z running updmap-sys ...
2021-06-03T19:01:55.4432024Z done running updmap-sys.
2021-06-03T19:01:55.4433686Z regenerating fmtutil.cnf in /home/runner/.TinyTeX/texmf-dist
2021-06-03T19:01:55.4435864Z running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/if9DMaHUf2/0OhhQjMZU1 ...
2021-06-03T19:01:55.7770240Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/if9DMaHUf2/0OhhQjMZU1.
2021-06-03T19:01:55.7771851Z   OK: optex.fmt/luatex
2021-06-03T19:01:55.7773038Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log
2021-06-03T19:01:55.7774434Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log
2021-06-03T19:01:56.9537592Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified)
2021-06-03T19:01:56.9539167Z tlmgr: no updates available
2021-06-03T19:01:57.0484180Z ##[group]Run r-lib/actions/setup-pandoc@master
2021-06-03T19:01:57.0484747Z with:
2021-06-03T19:01:57.0485171Z   pandoc-version: 2.7.3
2021-06-03T19:01:57.0485869Z env:
2021-06-03T19:01:57.0486352Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:01:57.0486868Z   TIC_DEPLOY_KEY: 
2021-06-03T19:01:57.0487755Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:01:57.0489604Z   GITHUB_PAT: ***
2021-06-03T19:01:57.0490476Z   COVERALLS_TOKEN: ***
2021-06-03T19:01:57.0491022Z   continue-on-error: true
2021-06-03T19:01:57.0491534Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:01:57.0492066Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:01:57.0492555Z   TZ: UTC
2021-06-03T19:01:57.0492970Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:01:57.0493425Z   NOT_CRAN: true
2021-06-03T19:01:57.0493827Z ##[endgroup]
2021-06-03T19:01:57.5211945Z [command]sudo apt-get install -y gdebi-core
2021-06-03T19:01:57.5829320Z Reading package lists...
2021-06-03T19:01:57.7250156Z Building dependency tree...
2021-06-03T19:01:57.7266240Z Reading state information...
2021-06-03T19:01:57.9407790Z gdebi-core is already the newest version (0.9.5.7+nmu3).
2021-06-03T19:01:57.9413520Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:01:57.9432309Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb
2021-06-03T19:01:58.0528738Z 
2021-06-03T19:01:58.0667633Z Reading package lists... 0%
2021-06-03T19:01:58.0668445Z 
2021-06-03T19:01:58.0709864Z Reading package lists... 100%
2021-06-03T19:01:58.0710570Z 
2021-06-03T19:01:58.0711027Z 
2021-06-03T19:01:58.0711746Z Reading package lists... Done
2021-06-03T19:01:58.0712305Z 
2021-06-03T19:01:58.0713006Z Building dependency tree... 0%
2021-06-03T19:01:58.0713570Z 
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2021-06-03T19:01:58.2089763Z Building dependency tree... 50%
2021-06-03T19:01:58.2090128Z 
2021-06-03T19:01:58.2090583Z Building dependency tree        
2021-06-03T19:01:58.2090892Z 
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2021-06-03T19:01:58.3533584Z 
2021-06-03T19:01:58.3533830Z 
2021-06-03T19:01:58.3534376Z Reading state information... Done
2021-06-03T19:01:58.3534778Z 
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2021-06-03T19:01:58.3580237Z   
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2021-06-03T19:01:58.5383419Z  
2021-06-03T19:01:58.5383934Z Reading state information... 99%
2021-06-03T19:01:58.7890825Z  Selecting previously unselected package pandoc.
2021-06-03T19:01:58.8834275Z (Reading database ... 237840 files and directories currently installed.)
2021-06-03T19:01:58.8910029Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ...
2021-06-03T19:01:58.8919131Z Unpacking pandoc (2.7.3-1) ...
2021-06-03T19:02:00.8459432Z Setting up pandoc (2.7.3-1) ...
2021-06-03T19:02:00.8495919Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:01.5259163Z 
2021-06-03T19:02:01.5259890Z 
2021-06-03T19:02:01.5260507Z Reading state information... Done
2021-06-03T19:02:01.5563578Z ##[group]Run git config user.name adigherman
2021-06-03T19:02:01.5564233Z git config user.name adigherman
2021-06-03T19:02:01.5564773Z git config user.email adig@jhu.edu
2021-06-03T19:02:01.5602925Z shell: /usr/bin/bash -e {0}
2021-06-03T19:02:01.5603325Z env:
2021-06-03T19:02:01.5603776Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:02:01.5604236Z   TIC_DEPLOY_KEY: 
2021-06-03T19:02:01.5605022Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:02:01.5606858Z   GITHUB_PAT: ***
2021-06-03T19:02:01.5607794Z   COVERALLS_TOKEN: ***
2021-06-03T19:02:01.5608299Z   continue-on-error: true
2021-06-03T19:02:01.5608756Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:02:01.5609233Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:02:01.5609675Z   TZ: UTC
2021-06-03T19:02:01.5610049Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:02:01.5610461Z   NOT_CRAN: true
2021-06-03T19:02:01.5610836Z ##[endgroup]
2021-06-03T19:02:01.5941932Z ##[group]Run adigherman/actions/install-sysdeps-linux@master
2021-06-03T19:02:01.5942537Z env:
2021-06-03T19:02:01.5942973Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:02:01.5943430Z   TIC_DEPLOY_KEY: 
2021-06-03T19:02:01.5944193Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:02:01.5945790Z   GITHUB_PAT: ***
2021-06-03T19:02:01.5946566Z   COVERALLS_TOKEN: ***
2021-06-03T19:02:01.5947044Z   continue-on-error: true
2021-06-03T19:02:01.5947489Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:02:01.5947957Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:02:01.5948373Z   TZ: UTC
2021-06-03T19:02:01.5948764Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:02:01.5949166Z   NOT_CRAN: true
2021-06-03T19:02:01.5949516Z ##[endgroup]
2021-06-03T19:02:01.7667806Z Reading package lists...
2021-06-03T19:02:01.9152912Z Building dependency tree...
2021-06-03T19:02:01.9169675Z Reading state information...
2021-06-03T19:02:02.0465332Z The following additional packages will be installed:
2021-06-03T19:02:02.0468621Z   cmake-data libjsoncpp1 librhash0
2021-06-03T19:02:02.0474718Z Suggested packages:
2021-06-03T19:02:02.0475536Z   cmake-doc ninja-build
2021-06-03T19:02:02.0924901Z The following NEW packages will be installed:
2021-06-03T19:02:02.0930840Z   cmake cmake-data libjsoncpp1 librhash0
2021-06-03T19:02:02.1115361Z 0 upgraded, 4 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:02.1116401Z Need to get 5470 kB of archives.
2021-06-03T19:02:02.1117576Z After this operation, 28.3 MB of additional disk space will be used.
2021-06-03T19:02:02.1119354Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB]
2021-06-03T19:02:02.1262282Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB]
2021-06-03T19:02:02.1269368Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB]
2021-06-03T19:02:02.1278949Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB]
2021-06-03T19:02:02.5247614Z Fetched 5470 kB in 0s (92.9 MB/s)
2021-06-03T19:02:02.5601019Z Selecting previously unselected package cmake-data.
2021-06-03T19:02:02.5668680Z (Reading database ... 
2021-06-03T19:02:02.5669352Z (Reading database ... 5%
2021-06-03T19:02:02.5669944Z (Reading database ... 10%
2021-06-03T19:02:02.5670537Z (Reading database ... 15%
2021-06-03T19:02:02.5671104Z (Reading database ... 20%
2021-06-03T19:02:02.5671675Z (Reading database ... 25%
2021-06-03T19:02:02.5672249Z (Reading database ... 30%
2021-06-03T19:02:02.5672804Z (Reading database ... 35%
2021-06-03T19:02:02.5673561Z (Reading database ... 40%
2021-06-03T19:02:02.5674145Z (Reading database ... 45%
2021-06-03T19:02:02.5674725Z (Reading database ... 50%
2021-06-03T19:02:02.5756371Z (Reading database ... 55%
2021-06-03T19:02:02.5801995Z (Reading database ... 60%
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2021-06-03T19:02:02.5886051Z (Reading database ... 70%
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2021-06-03T19:02:02.5935555Z (Reading database ... 80%
2021-06-03T19:02:02.6266209Z (Reading database ... 85%
2021-06-03T19:02:02.6323895Z (Reading database ... 90%
2021-06-03T19:02:02.6635060Z (Reading database ... 95%
2021-06-03T19:02:02.6635662Z (Reading database ... 100%
2021-06-03T19:02:02.6636481Z (Reading database ... 237847 files and directories currently installed.)
2021-06-03T19:02:02.6723935Z Preparing to unpack .../cmake-data_3.16.3-1ubuntu1_all.deb ...
2021-06-03T19:02:02.6877097Z Unpacking cmake-data (3.16.3-1ubuntu1) ...
2021-06-03T19:02:03.1396031Z Selecting previously unselected package libjsoncpp1:amd64.
2021-06-03T19:02:03.1633149Z Preparing to unpack .../libjsoncpp1_1.7.4-3.1ubuntu2_amd64.deb ...
2021-06-03T19:02:03.1649175Z Unpacking libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ...
2021-06-03T19:02:03.1967641Z Selecting previously unselected package librhash0:amd64.
2021-06-03T19:02:03.2137354Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ...
2021-06-03T19:02:03.2146527Z Unpacking librhash0:amd64 (1.3.9-1) ...
2021-06-03T19:02:03.2430246Z Selecting previously unselected package cmake.
2021-06-03T19:02:03.2656972Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ...
2021-06-03T19:02:03.2662600Z Unpacking cmake (3.16.3-1ubuntu1) ...
2021-06-03T19:02:03.6527155Z Setting up librhash0:amd64 (1.3.9-1) ...
2021-06-03T19:02:03.6554496Z Setting up cmake-data (3.16.3-1ubuntu1) ...
2021-06-03T19:02:03.6928265Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ...
2021-06-03T19:02:03.6949744Z Setting up cmake (3.16.3-1ubuntu1) ...
2021-06-03T19:02:03.6974888Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:04.6892158Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:06.3136196Z Reading package lists...
2021-06-03T19:02:06.4595334Z Building dependency tree...
2021-06-03T19:02:06.4612565Z Reading state information...
2021-06-03T19:02:06.5966464Z Suggested packages:
2021-06-03T19:02:06.5968052Z   libssh-doc
2021-06-03T19:02:06.6414671Z The following NEW packages will be installed:
2021-06-03T19:02:06.6419274Z   libssh-dev
2021-06-03T19:02:06.6866964Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:06.6867756Z Need to get 219 kB of archives.
2021-06-03T19:02:06.6868783Z After this operation, 1127 kB of additional disk space will be used.
2021-06-03T19:02:06.6870822Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB]
2021-06-03T19:02:07.0655233Z Fetched 219 kB in 0s (3735 kB/s)
2021-06-03T19:02:07.0913768Z Selecting previously unselected package libssh-dev:amd64.
2021-06-03T19:02:07.0977925Z (Reading database ... 
2021-06-03T19:02:07.0978644Z (Reading database ... 5%
2021-06-03T19:02:07.0979296Z (Reading database ... 10%
2021-06-03T19:02:07.0979972Z (Reading database ... 15%
2021-06-03T19:02:07.0980602Z (Reading database ... 20%
2021-06-03T19:02:07.0981234Z (Reading database ... 25%
2021-06-03T19:02:07.0981881Z (Reading database ... 30%
2021-06-03T19:02:07.0982506Z (Reading database ... 35%
2021-06-03T19:02:07.0983138Z (Reading database ... 40%
2021-06-03T19:02:07.0983776Z (Reading database ... 45%
2021-06-03T19:02:07.0984397Z (Reading database ... 50%
2021-06-03T19:02:07.1064778Z (Reading database ... 55%
2021-06-03T19:02:07.1105347Z (Reading database ... 60%
2021-06-03T19:02:07.1134023Z (Reading database ... 65%
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2021-06-03T19:02:07.1232624Z (Reading database ... 80%
2021-06-03T19:02:07.1564208Z (Reading database ... 85%
2021-06-03T19:02:07.1620411Z (Reading database ... 90%
2021-06-03T19:02:07.1908584Z (Reading database ... 95%
2021-06-03T19:02:07.1909493Z (Reading database ... 100%
2021-06-03T19:02:07.1910476Z (Reading database ... 240631 files and directories currently installed.)
2021-06-03T19:02:07.1992593Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ...
2021-06-03T19:02:07.2002453Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ...
2021-06-03T19:02:07.2720676Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ...
2021-06-03T19:02:08.9187316Z Reading package lists...
2021-06-03T19:02:09.0640507Z Building dependency tree...
2021-06-03T19:02:09.0658037Z Reading state information...
2021-06-03T19:02:09.2484513Z The following NEW packages will be installed:
2021-06-03T19:02:09.2491711Z   jags
2021-06-03T19:02:09.2728728Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:09.2729455Z Need to get 1562 kB of archives.
2021-06-03T19:02:09.2730160Z After this operation, 3615 kB of additional disk space will be used.
2021-06-03T19:02:09.2731923Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB]
2021-06-03T19:02:09.7320671Z Fetched 1562 kB in 0s (14.4 MB/s)
2021-06-03T19:02:09.7687673Z Selecting previously unselected package jags.
2021-06-03T19:02:09.7704952Z (Reading database ... 
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2021-06-03T19:02:09.8653824Z (Reading database ... 240650 files and directories currently installed.)
2021-06-03T19:02:09.8740302Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ...
2021-06-03T19:02:09.8762352Z Unpacking jags (4.3.0-3build1) ...
2021-06-03T19:02:10.0194438Z Setting up jags (4.3.0-3build1) ...
2021-06-03T19:02:10.0296820Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:10.6769305Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:12.3211741Z Reading package lists...
2021-06-03T19:02:12.4643776Z Building dependency tree...
2021-06-03T19:02:12.4661581Z Reading state information...
2021-06-03T19:02:12.6053323Z The following additional packages will be installed:
2021-06-03T19:02:12.6057008Z   libnode64 libuv1-dev
2021-06-03T19:02:12.6521763Z The following NEW packages will be installed:
2021-06-03T19:02:12.6528424Z   libnode-dev libnode64 libuv1-dev
2021-06-03T19:02:12.6748343Z 0 upgraded, 3 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:12.6749264Z Need to get 6239 kB of archives.
2021-06-03T19:02:12.6750059Z After this operation, 24.9 MB of additional disk space will be used.
2021-06-03T19:02:12.6751880Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB]
2021-06-03T19:02:12.6923781Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB]
2021-06-03T19:02:13.5755260Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB]
2021-06-03T19:02:13.9602861Z Fetched 6239 kB in 1s (6693 kB/s)
2021-06-03T19:02:13.9888660Z Selecting previously unselected package libuv1-dev:amd64.
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2021-06-03T19:02:14.0955183Z (Reading database ... 240790 files and directories currently installed.)
2021-06-03T19:02:14.1042445Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ...
2021-06-03T19:02:14.1052122Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ...
2021-06-03T19:02:14.1366765Z Selecting previously unselected package libnode64:amd64.
2021-06-03T19:02:14.1578655Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ...
2021-06-03T19:02:14.1594185Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ...
2021-06-03T19:02:14.7607582Z Selecting previously unselected package libnode-dev:amd64.
2021-06-03T19:02:14.7769372Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ...
2021-06-03T19:02:14.7778258Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ...
2021-06-03T19:02:14.8599671Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ...
2021-06-03T19:02:14.8619060Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ...
2021-06-03T19:02:14.8643640Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ...
2021-06-03T19:02:14.8665563Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:16.5242811Z Reading package lists...
2021-06-03T19:02:16.6657107Z Building dependency tree...
2021-06-03T19:02:16.6673164Z Reading state information...
2021-06-03T19:02:16.8034642Z The following additional packages will be installed:
2021-06-03T19:02:16.8038067Z   libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3
2021-06-03T19:02:16.8042757Z Suggested packages:
2021-06-03T19:02:16.8043518Z   libfftw3-doc
2021-06-03T19:02:16.8481094Z The following NEW packages will be installed:
2021-06-03T19:02:16.8484627Z   libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3
2021-06-03T19:02:16.8651813Z 0 upgraded, 5 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:16.8652547Z Need to get 3986 kB of archives.
2021-06-03T19:02:16.8653256Z After this operation, 22.4 MB of additional disk space will be used.
2021-06-03T19:02:16.8654924Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB]
2021-06-03T19:02:16.8733621Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB]
2021-06-03T19:02:16.8903287Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB]
2021-06-03T19:02:16.9156587Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB]
2021-06-03T19:02:16.9166966Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB]
2021-06-03T19:02:17.6088458Z Fetched 3986 kB in 0s (10.2 MB/s)
2021-06-03T19:02:17.6407433Z Selecting previously unselected package libfftw3-long3:amd64.
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2021-06-03T19:02:17.7388900Z (Reading database ... 240926 files and directories currently installed.)
2021-06-03T19:02:17.7477362Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ...
2021-06-03T19:02:17.7491838Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:17.8047416Z Selecting previously unselected package libfftw3-quad3:amd64.
2021-06-03T19:02:17.8204835Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ...
2021-06-03T19:02:17.8214335Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:17.9048127Z Selecting previously unselected package libfftw3-single3:amd64.
2021-06-03T19:02:17.9259385Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ...
2021-06-03T19:02:17.9267024Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.0088144Z Selecting previously unselected package libfftw3-bin.
2021-06-03T19:02:18.0308194Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ...
2021-06-03T19:02:18.0316322Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.0607800Z Selecting previously unselected package libfftw3-dev:amd64.
2021-06-03T19:02:18.0769770Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ...
2021-06-03T19:02:18.0779144Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.3383122Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.3402777Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.3422632Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.3443623Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.3464934Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ...
2021-06-03T19:02:18.3487212Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:19.0618020Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:20.7351344Z Reading package lists...
2021-06-03T19:02:20.8815480Z Building dependency tree...
2021-06-03T19:02:20.8831570Z Reading state information...
2021-06-03T19:02:21.0189543Z The following additional packages will be installed:
2021-06-03T19:02:21.0191495Z   libdcmtk14
2021-06-03T19:02:21.0656206Z The following NEW packages will be installed:
2021-06-03T19:02:21.0664723Z   dcmtk libdcmtk14
2021-06-03T19:02:21.0907908Z 0 upgraded, 2 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:21.0908849Z Need to get 5546 kB of archives.
2021-06-03T19:02:21.0909998Z After this operation, 26.5 MB of additional disk space will be used.
2021-06-03T19:02:21.0911793Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB]
2021-06-03T19:02:21.3265296Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB]
2021-06-03T19:02:21.7423541Z Fetched 5546 kB in 0s (18.0 MB/s)
2021-06-03T19:02:21.7722201Z Selecting previously unselected package libdcmtk14.
2021-06-03T19:02:21.7788217Z (Reading database ... 
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2021-06-03T19:02:21.8787186Z (Reading database ... 241017 files and directories currently installed.)
2021-06-03T19:02:21.8873254Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ...
2021-06-03T19:02:21.8889316Z Unpacking libdcmtk14 (3.6.4-2.1build2) ...
2021-06-03T19:02:22.3527552Z Selecting previously unselected package dcmtk.
2021-06-03T19:02:22.3699604Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ...
2021-06-03T19:02:22.3751768Z Unpacking dcmtk (3.6.4-2.1build2) ...
2021-06-03T19:02:22.5025815Z Setting up libdcmtk14 (3.6.4-2.1build2) ...
2021-06-03T19:02:22.5043774Z Setting up dcmtk (3.6.4-2.1build2) ...
2021-06-03T19:02:22.5140014Z Adding `dcmtk' group to system ...
2021-06-03T19:02:22.5592325Z Adding `dcmtk' user to system ...
2021-06-03T19:02:22.6187916Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating.
2021-06-03T19:02:22.8672427Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:24.3351412Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:25.9853153Z Reading package lists...
2021-06-03T19:02:26.1360818Z Building dependency tree...
2021-06-03T19:02:26.1377195Z Reading state information...
2021-06-03T19:02:26.3529259Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1).
2021-06-03T19:02:26.3530588Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:26.4113037Z Reading package lists...
2021-06-03T19:02:26.5570703Z Building dependency tree...
2021-06-03T19:02:26.5586792Z Reading state information...
2021-06-03T19:02:26.7866348Z libpng-dev is already the newest version (1.6.37-2).
2021-06-03T19:02:26.7867673Z libpng-dev set to manually installed.
2021-06-03T19:02:26.7868614Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:26.8450996Z Reading package lists...
2021-06-03T19:02:26.9877758Z Building dependency tree...
2021-06-03T19:02:26.9892213Z Reading state information...
2021-06-03T19:02:27.1246242Z The following additional packages will be installed:
2021-06-03T19:02:27.1248775Z   libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data
2021-06-03T19:02:27.1252385Z Suggested packages:
2021-06-03T19:02:27.1253920Z   poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho
2021-06-03T19:02:27.1255707Z   fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
2021-06-03T19:02:27.1257088Z   fonts-arphic-uming fonts-nanum
2021-06-03T19:02:27.1696990Z The following NEW packages will be installed:
2021-06-03T19:02:27.1699060Z   libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev
2021-06-03T19:02:27.1700314Z   libpoppler97 poppler-data
2021-06-03T19:02:27.1874524Z 0 upgraded, 6 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:27.1875710Z Need to get 2582 kB of archives.
2021-06-03T19:02:27.1877036Z After this operation, 16.7 MB of additional disk space will be used.
2021-06-03T19:02:27.1879253Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB]
2021-06-03T19:02:27.2239167Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB]
2021-06-03T19:02:27.2273583Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB]
2021-06-03T19:02:27.2516374Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB]
2021-06-03T19:02:27.2558344Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B]
2021-06-03T19:02:27.2605115Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB]
2021-06-03T19:02:27.6259808Z Fetched 2582 kB in 0s (29.8 MB/s)
2021-06-03T19:02:27.6536484Z Selecting previously unselected package poppler-data.
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2021-06-03T19:02:27.7558137Z (Reading database ... 241252 files and directories currently installed.)
2021-06-03T19:02:27.7643242Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ...
2021-06-03T19:02:27.7651355Z Unpacking poppler-data (0.4.9-2) ...
2021-06-03T19:02:27.9848149Z Selecting previously unselected package libopenjp2-7:amd64.
2021-06-03T19:02:28.0021304Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ...
2021-06-03T19:02:28.0054837Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ...
2021-06-03T19:02:28.0384540Z Selecting previously unselected package libpoppler97:amd64.
2021-06-03T19:02:28.0610651Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ...
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2021-06-03T19:02:28.1666301Z Selecting previously unselected package libpoppler-cpp0v5:amd64.
2021-06-03T19:02:28.1892024Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ...
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2021-06-03T19:02:28.2207406Z Selecting previously unselected package libpoppler-dev:amd64.
2021-06-03T19:02:28.2360327Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ...
2021-06-03T19:02:28.2370627Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ...
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2021-06-03T19:02:28.2809838Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ...
2021-06-03T19:02:28.3322424Z Setting up poppler-data (0.4.9-2) ...
2021-06-03T19:02:28.3449549Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ...
2021-06-03T19:02:28.3481717Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ...
2021-06-03T19:02:28.3529858Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ...
2021-06-03T19:02:28.3548050Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ...
2021-06-03T19:02:28.3572240Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ...
2021-06-03T19:02:28.3615451Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ...
2021-06-03T19:02:28.4075659Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:30.0327049Z Reading package lists...
2021-06-03T19:02:30.1787855Z Building dependency tree...
2021-06-03T19:02:30.1803893Z Reading state information...
2021-06-03T19:02:30.3188671Z The following additional packages will be installed:
2021-06-03T19:02:30.3192246Z   hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2
2021-06-03T19:02:30.3196615Z Suggested packages:
2021-06-03T19:02:30.3197556Z   libhdf5-doc
2021-06-03T19:02:30.3660584Z The following NEW packages will be installed:
2021-06-03T19:02:30.3664091Z   hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev
2021-06-03T19:02:30.3666009Z   libsz2
2021-06-03T19:02:30.3836494Z 0 upgraded, 7 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:30.3837279Z Need to get 4074 kB of archives.
2021-06-03T19:02:30.3837970Z After this operation, 17.6 MB of additional disk space will be used.
2021-06-03T19:02:30.3839974Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB]
2021-06-03T19:02:30.3858965Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB]
2021-06-03T19:02:30.3865205Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B]
2021-06-03T19:02:30.3871755Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB]
2021-06-03T19:02:30.4093226Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB]
2021-06-03T19:02:30.4114817Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB]
2021-06-03T19:02:30.4121201Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB]
2021-06-03T19:02:30.8296703Z Fetched 4074 kB in 0s (46.6 MB/s)
2021-06-03T19:02:30.8569238Z Selecting previously unselected package hdf5-helpers.
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2021-06-03T19:02:30.9606909Z (Reading database ... 241812 files and directories currently installed.)
2021-06-03T19:02:30.9692992Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ...
2021-06-03T19:02:30.9700655Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:30.9926623Z Selecting previously unselected package libaec0:amd64.
2021-06-03T19:02:31.0148533Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ...
2021-06-03T19:02:31.1414683Z Unpacking libaec0:amd64 (1.0.4-1) ...
2021-06-03T19:02:31.1687070Z Selecting previously unselected package libsz2:amd64.
2021-06-03T19:02:31.1864552Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ...
2021-06-03T19:02:31.1871465Z Unpacking libsz2:amd64 (1.0.4-1) ...
2021-06-03T19:02:31.2127315Z Selecting previously unselected package libhdf5-103:amd64.
2021-06-03T19:02:31.2331141Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ...
2021-06-03T19:02:31.2339631Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:31.3728147Z Selecting previously unselected package libhdf5-cpp-103:amd64.
2021-06-03T19:02:31.3920631Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ...
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2021-06-03T19:02:31.4287439Z Selecting previously unselected package libaec-dev:amd64.
2021-06-03T19:02:31.4454342Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ...
2021-06-03T19:02:31.4465291Z Unpacking libaec-dev:amd64 (1.0.4-1) ...
2021-06-03T19:02:31.4727808Z Selecting previously unselected package libhdf5-dev.
2021-06-03T19:02:31.4900018Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ...
2021-06-03T19:02:31.4909676Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:31.7787508Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:31.7811483Z Setting up libaec0:amd64 (1.0.4-1) ...
2021-06-03T19:02:31.7833827Z Setting up libsz2:amd64 (1.0.4-1) ...
2021-06-03T19:02:31.7857457Z Setting up libaec-dev:amd64 (1.0.4-1) ...
2021-06-03T19:02:31.7879593Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:31.7901411Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:31.7922166Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ...
2021-06-03T19:02:31.7990586Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
2021-06-03T19:02:31.8013466Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:32.4762019Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:34.1267897Z Reading package lists...
2021-06-03T19:02:34.2767454Z Building dependency tree...
2021-06-03T19:02:34.2783814Z Reading state information...
2021-06-03T19:02:34.4162555Z The following additional packages will be installed:
2021-06-03T19:02:34.4165518Z   libdrm-dev libgl-dev libglu1-mesa libglx-dev
2021-06-03T19:02:34.4630433Z The following NEW packages will be installed:
2021-06-03T19:02:34.4635362Z   libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev
2021-06-03T19:02:34.4637890Z   mesa-common-dev
2021-06-03T19:02:34.4833302Z 0 upgraded, 6 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:34.4834030Z Need to get 1761 kB of archives.
2021-06-03T19:02:34.4834744Z After this operation, 5442 kB of additional disk space will be used.
2021-06-03T19:02:34.4836678Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB]
2021-06-03T19:02:34.5004658Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB]
2021-06-03T19:02:34.5035086Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB]
2021-06-03T19:02:34.5185904Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB]
2021-06-03T19:02:34.5412257Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB]
2021-06-03T19:02:34.5729303Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB]
2021-06-03T19:02:35.1341777Z Fetched 1761 kB in 0s (5921 kB/s)
2021-06-03T19:02:35.1609236Z Selecting previously unselected package libdrm-dev:amd64.
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2021-06-03T19:02:35.2654232Z (Reading database ... 242020 files and directories currently installed.)
2021-06-03T19:02:35.2739759Z Preparing to unpack .../0-libdrm-dev_2.4.102-1ubuntu1~20.04.1_amd64.deb ...
2021-06-03T19:02:35.2754756Z Unpacking libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ...
2021-06-03T19:02:35.3167740Z Selecting previously unselected package libglx-dev:amd64.
2021-06-03T19:02:35.3326846Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ...
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2021-06-03T19:02:35.3557443Z Selecting previously unselected package libgl-dev:amd64.
2021-06-03T19:02:35.3782443Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:02:35.3793515Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ...
2021-06-03T19:02:35.4208234Z Selecting previously unselected package libglu1-mesa:amd64.
2021-06-03T19:02:35.4342325Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ...
2021-06-03T19:02:35.4366859Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ...
2021-06-03T19:02:35.4767572Z Selecting previously unselected package libglu1-mesa-dev:amd64.
2021-06-03T19:02:35.4957947Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ...
2021-06-03T19:02:35.4967820Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ...
2021-06-03T19:02:35.5447426Z Selecting previously unselected package mesa-common-dev:amd64.
2021-06-03T19:02:35.5610588Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:02:35.5626111Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ...
2021-06-03T19:02:35.7120016Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ...
2021-06-03T19:02:35.7145242Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ...
2021-06-03T19:02:35.7174606Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ...
2021-06-03T19:02:35.7204075Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ...
2021-06-03T19:02:35.7227039Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ...
2021-06-03T19:02:35.7257363Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ...
2021-06-03T19:02:35.7291544Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:37.0209138Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:38.6709382Z Reading package lists...
2021-06-03T19:02:38.8158417Z Building dependency tree...
2021-06-03T19:02:38.8176112Z Reading state information...
2021-06-03T19:02:38.9538971Z The following additional packages will be installed:
2021-06-03T19:02:38.9541239Z   libprotobuf-lite17 libprotoc17
2021-06-03T19:02:38.9990057Z The following NEW packages will be installed:
2021-06-03T19:02:38.9992678Z   libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17
2021-06-03T19:02:38.9994043Z   protobuf-compiler
2021-06-03T19:02:39.0195439Z 0 upgraded, 5 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:39.0196676Z Need to get 2754 kB of archives.
2021-06-03T19:02:39.0198258Z After this operation, 19.9 MB of additional disk space will be used.
2021-06-03T19:02:39.0200118Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB]
2021-06-03T19:02:39.0232080Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB]
2021-06-03T19:02:39.0567776Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB]
2021-06-03T19:02:39.1227890Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB]
2021-06-03T19:02:39.1992830Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB]
2021-06-03T19:02:39.5697305Z Fetched 2754 kB in 0s (14.0 MB/s)
2021-06-03T19:02:39.6005069Z Selecting previously unselected package libprotobuf-lite17:amd64.
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2021-06-03T19:02:39.7012575Z (Reading database ... 242503 files and directories currently installed.)
2021-06-03T19:02:39.7107428Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ...
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2021-06-03T19:02:39.7526977Z Selecting previously unselected package libprotoc17:amd64.
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2021-06-03T19:02:39.8568618Z Selecting previously unselected package libprotobuf-dev:amd64.
2021-06-03T19:02:39.8734112Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ...
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2021-06-03T19:02:40.0397159Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ...
2021-06-03T19:02:40.0410408Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.1527965Z Selecting previously unselected package protobuf-compiler.
2021-06-03T19:02:40.1666793Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ...
2021-06-03T19:02:40.1675954Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.2196801Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.2231193Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.2253187Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.2276877Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.2321278Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ...
2021-06-03T19:02:40.2351215Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:40.8779555Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:42.5002151Z Reading package lists...
2021-06-03T19:02:42.6446407Z Building dependency tree...
2021-06-03T19:02:42.6462641Z Reading state information...
2021-06-03T19:02:42.7854878Z The following additional packages will be installed:
2021-06-03T19:02:42.7857365Z   i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0
2021-06-03T19:02:42.7859009Z   libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58
2021-06-03T19:02:42.7860310Z   libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0
2021-06-03T19:02:42.7861947Z   libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9
2021-06-03T19:02:42.7863497Z   libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11
2021-06-03T19:02:42.7864921Z   libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1
2021-06-03T19:02:42.7866434Z   libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0
2021-06-03T19:02:42.7867979Z   libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0
2021-06-03T19:02:42.7869470Z   libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0
2021-06-03T19:02:42.7870946Z   libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5
2021-06-03T19:02:42.7872769Z   libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1
2021-06-03T19:02:42.7874257Z   libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4
2021-06-03T19:02:42.7875807Z   libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers
2021-06-03T19:02:42.7877292Z   ocl-icd-libopencl1 va-driver-all vdpau-driver-all
2021-06-03T19:02:42.7878327Z Suggested packages:
2021-06-03T19:02:42.7879653Z   ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2
2021-06-03T19:02:42.7882156Z   opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd
2021-06-03T19:02:42.7883908Z   libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver
2021-06-03T19:02:42.7885428Z   nvidia-legacy-304xx-vdpau-driver
2021-06-03T19:02:42.8542373Z The following NEW packages will be installed:
2021-06-03T19:02:42.8546294Z   ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9
2021-06-03T19:02:42.8547506Z   libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7
2021-06-03T19:02:42.8549882Z   libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0
2021-06-03T19:02:42.8552219Z   libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1
2021-06-03T19:02:42.8555746Z   libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0
2021-06-03T19:02:42.8558987Z   libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1
2021-06-03T19:02:42.8561649Z   libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0
2021-06-03T19:02:42.8565192Z   libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0
2021-06-03T19:02:42.8566498Z   libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0
2021-06-03T19:02:42.8569116Z   libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5
2021-06-03T19:02:42.8571511Z   libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1
2021-06-03T19:02:42.8573851Z   libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4
2021-06-03T19:02:42.8577416Z   libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers
2021-06-03T19:02:42.8582646Z   ocl-icd-libopencl1 va-driver-all vdpau-driver-all
2021-06-03T19:02:42.8781679Z 0 upgraded, 76 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:42.8782391Z Need to get 47.1 MB of archives.
2021-06-03T19:02:42.8783082Z After this operation, 195 MB of additional disk space will be used.
2021-06-03T19:02:42.8784702Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB]
2021-06-03T19:02:42.9767408Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB]
2021-06-03T19:02:42.9823741Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B]
2021-06-03T19:02:42.9829273Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB]
2021-06-03T19:02:42.9836464Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB]
2021-06-03T19:02:42.9867573Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB]
2021-06-03T19:02:42.9887546Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB]
2021-06-03T19:02:43.0048581Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB]
2021-06-03T19:02:43.6412781Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB]
2021-06-03T19:02:43.6540442Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB]
2021-06-03T19:02:43.6664433Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB]
2021-06-03T19:02:43.6895452Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB]
2021-06-03T19:02:43.6918582Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB]
2021-06-03T19:02:43.6944071Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB]
2021-06-03T19:02:43.6993635Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB]
2021-06-03T19:02:43.7056440Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB]
2021-06-03T19:02:43.7103209Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB]
2021-06-03T19:02:43.7211947Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB]
2021-06-03T19:02:43.7256799Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB]
2021-06-03T19:02:43.7320238Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB]
2021-06-03T19:02:43.7386475Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB]
2021-06-03T19:02:43.7786501Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB]
2021-06-03T19:02:43.8613136Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB]
2021-06-03T19:02:43.8810928Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB]
2021-06-03T19:02:43.8841496Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB]
2021-06-03T19:02:43.9034731Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB]
2021-06-03T19:02:44.2889779Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB]
2021-06-03T19:02:44.2920165Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB]
2021-06-03T19:02:44.2945121Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB]
2021-06-03T19:02:44.3019950Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB]
2021-06-03T19:02:44.3134515Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB]
2021-06-03T19:02:44.3188212Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB]
2021-06-03T19:02:44.3316095Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB]
2021-06-03T19:02:44.3424133Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB]
2021-06-03T19:02:44.3940621Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB]
2021-06-03T19:02:44.4113366Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB]
2021-06-03T19:02:44.4874155Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB]
2021-06-03T19:02:44.4889792Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB]
2021-06-03T19:02:45.3228080Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB]
2021-06-03T19:02:45.3234231Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB]
2021-06-03T19:02:45.3297812Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB]
2021-06-03T19:02:45.3323073Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB]
2021-06-03T19:02:45.3368497Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB]
2021-06-03T19:02:45.3405402Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB]
2021-06-03T19:02:45.3453709Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB]
2021-06-03T19:02:45.4186816Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB]
2021-06-03T19:02:45.4267222Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB]
2021-06-03T19:02:45.4384234Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB]
2021-06-03T19:02:45.4416398Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB]
2021-06-03T19:02:45.5321113Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB]
2021-06-03T19:02:45.5499510Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB]
2021-06-03T19:02:45.5561967Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB]
2021-06-03T19:02:45.5584521Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB]
2021-06-03T19:02:45.5613645Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB]
2021-06-03T19:02:45.5695838Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB]
2021-06-03T19:02:45.5731902Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB]
2021-06-03T19:02:45.6020415Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB]
2021-06-03T19:02:45.6169650Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB]
2021-06-03T19:02:45.6200625Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB]
2021-06-03T19:02:45.6621412Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB]
2021-06-03T19:02:45.6647951Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB]
2021-06-03T19:02:45.6756813Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB]
2021-06-03T19:02:45.6928405Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB]
2021-06-03T19:02:45.7190117Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB]
2021-06-03T19:02:45.7531806Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB]
2021-06-03T19:02:45.7609301Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB]
2021-06-03T19:02:45.7681706Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB]
2021-06-03T19:02:45.8985333Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB]
2021-06-03T19:02:45.9101268Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB]
2021-06-03T19:02:46.0899499Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB]
2021-06-03T19:02:46.0992905Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB]
2021-06-03T19:02:46.1055176Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB]
2021-06-03T19:02:46.4094930Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB]
2021-06-03T19:02:46.7047647Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB]
2021-06-03T19:02:46.8091488Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B]
2021-06-03T19:02:46.8107502Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B]
2021-06-03T19:02:47.3337589Z Fetched 47.1 MB in 4s (11.9 MB/s)
2021-06-03T19:02:47.3618146Z Selecting previously unselected package libaom0:amd64.
2021-06-03T19:02:47.3684633Z (Reading database ... 
2021-06-03T19:02:47.3685364Z (Reading database ... 5%
2021-06-03T19:02:47.3686168Z (Reading database ... 10%
2021-06-03T19:02:47.3686817Z (Reading database ... 15%
2021-06-03T19:02:47.3687478Z (Reading database ... 20%
2021-06-03T19:02:47.3688103Z (Reading database ... 25%
2021-06-03T19:02:47.3688740Z (Reading database ... 30%
2021-06-03T19:02:47.3689387Z (Reading database ... 35%
2021-06-03T19:02:47.3690011Z (Reading database ... 40%
2021-06-03T19:02:47.3690641Z (Reading database ... 45%
2021-06-03T19:02:47.3691260Z (Reading database ... 50%
2021-06-03T19:02:47.3769559Z (Reading database ... 55%
2021-06-03T19:02:47.3811195Z (Reading database ... 60%
2021-06-03T19:02:47.3839499Z (Reading database ... 65%
2021-06-03T19:02:47.3894144Z (Reading database ... 70%
2021-06-03T19:02:47.3918528Z (Reading database ... 75%
2021-06-03T19:02:47.3945798Z (Reading database ... 80%
2021-06-03T19:02:47.4278028Z (Reading database ... 85%
2021-06-03T19:02:47.4333047Z (Reading database ... 90%
2021-06-03T19:02:47.4636090Z (Reading database ... 95%
2021-06-03T19:02:47.4636633Z (Reading database ... 100%
2021-06-03T19:02:47.4637357Z (Reading database ... 242674 files and directories currently installed.)
2021-06-03T19:02:47.4721912Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ...
2021-06-03T19:02:47.4744857Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ...
2021-06-03T19:02:47.6046919Z Selecting previously unselected package libva2:amd64.
2021-06-03T19:02:47.6236382Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ...
2021-06-03T19:02:47.6251674Z Unpacking libva2:amd64 (2.7.0-2) ...
2021-06-03T19:02:47.6498192Z Selecting previously unselected package libva-drm2:amd64.
2021-06-03T19:02:47.6724940Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ...
2021-06-03T19:02:47.6738355Z Unpacking libva-drm2:amd64 (2.7.0-2) ...
2021-06-03T19:02:47.7007288Z Selecting previously unselected package libva-x11-2:amd64.
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2021-06-03T19:02:53.8247388Z Selecting previously unselected package intel-media-va-driver:amd64.
2021-06-03T19:02:53.8443787Z Preparing to unpack .../68-intel-media-va-driver_20.1.1+dfsg1-1_amd64.deb ...
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2021-06-03T19:02:54.0327529Z Selecting previously unselected package libaacs0:amd64.
2021-06-03T19:02:54.0529986Z Preparing to unpack .../69-libaacs0_0.9.0-2_amd64.deb ...
2021-06-03T19:02:54.0545032Z Unpacking libaacs0:amd64 (0.9.0-2) ...
2021-06-03T19:02:54.0847017Z Selecting previously unselected package libbdplus0:amd64.
2021-06-03T19:02:54.1022957Z Preparing to unpack .../70-libbdplus0_0.1.2-3_amd64.deb ...
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2021-06-03T19:02:54.1266963Z Selecting previously unselected package mesa-va-drivers:amd64.
2021-06-03T19:02:54.1496695Z Preparing to unpack .../71-mesa-va-drivers_20.2.6-0ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:02:54.1505061Z Unpacking mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ...
2021-06-03T19:02:54.4018567Z Selecting previously unselected package mesa-vdpau-drivers:amd64.
2021-06-03T19:02:54.4243974Z Preparing to unpack .../72-mesa-vdpau-drivers_20.2.6-0ubuntu0.20.04.1_amd64.deb ...
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2021-06-03T19:02:54.7038053Z Selecting previously unselected package i965-va-driver:amd64.
2021-06-03T19:02:54.7269868Z Preparing to unpack .../73-i965-va-driver_2.4.0-0ubuntu1_amd64.deb ...
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2021-06-03T19:02:54.8487749Z Selecting previously unselected package va-driver-all:amd64.
2021-06-03T19:02:54.8684686Z Preparing to unpack .../74-va-driver-all_2.7.0-2_amd64.deb ...
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2021-06-03T19:02:54.8927229Z Selecting previously unselected package vdpau-driver-all:amd64.
2021-06-03T19:02:54.9113171Z Preparing to unpack .../75-vdpau-driver-all_1.3-1ubuntu2_amd64.deb ...
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2021-06-03T19:02:54.9691524Z Setting up libgme0:amd64 (0.6.2-1build1) ...
2021-06-03T19:02:54.9718655Z Setting up libssh-gcrypt-4:amd64 (0.9.3-2ubuntu2.1) ...
2021-06-03T19:02:54.9745259Z Setting up libraw1394-11:amd64 (2.1.2-1) ...
2021-06-03T19:02:54.9774796Z Setting up libmpg123-0:amd64 (1.25.13-1) ...
2021-06-03T19:02:54.9806879Z Setting up libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ...
2021-06-03T19:02:54.9830573Z Setting up libshine3:amd64 (3.1.1-2) ...
2021-06-03T19:02:54.9860586Z Setting up libcaca0:amd64 (0.99.beta19-2.1ubuntu1.20.04.1) ...
2021-06-03T19:02:54.9890023Z Setting up libtwolame0:amd64 (0.4.0-2) ...
2021-06-03T19:02:54.9909970Z Setting up libgsm1:amd64 (1.0.18-2) ...
2021-06-03T19:02:54.9947585Z Setting up libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ...
2021-06-03T19:02:54.9970076Z Setting up libx265-179:amd64 (3.2.1-1build1) ...
2021-06-03T19:02:54.9992896Z Setting up libsoxr0:amd64 (0.1.3-2build1) ...
2021-06-03T19:02:55.0015965Z Setting up libaom0:amd64 (1.0.0.errata1-3build1) ...
2021-06-03T19:02:55.0044275Z Setting up libmysofa1:amd64 (1.0~dfsg0-1) ...
2021-06-03T19:02:55.0065897Z Setting up libdc1394-22:amd64 (2.2.5-2.1) ...
2021-06-03T19:02:55.0106169Z Setting up libcdio18:amd64 (2.0.0-2) ...
2021-06-03T19:02:55.0132418Z Setting up libxvidcore4:amd64 (2:1.3.7-1) ...
2021-06-03T19:02:55.0175837Z Setting up libsnappy1v5:amd64 (1.1.8-1build1) ...
2021-06-03T19:02:55.0202014Z Setting up libflac8:amd64 (1.3.3-1build1) ...
2021-06-03T19:02:55.0230122Z Setting up libass9:amd64 (1:0.14.0-2) ...
2021-06-03T19:02:55.0278547Z Setting up libva2:amd64 (2.7.0-2) ...
2021-06-03T19:02:55.0299186Z Setting up libigdgmm11:amd64 (20.1.1+ds1-1) ...
2021-06-03T19:02:55.0323370Z Setting up libcodec2-0.9:amd64 (0.9.2-2) ...
2021-06-03T19:02:55.0346724Z Setting up libopus0:amd64 (1.3.1-0ubuntu1) ...
2021-06-03T19:02:55.0369407Z Setting up intel-media-va-driver:amd64 (20.1.1+dfsg1-1) ...
2021-06-03T19:02:55.0396205Z Setting up libaacs0:amd64 (0.9.0-2) ...
2021-06-03T19:02:55.0417275Z Setting up libsndio7.0:amd64 (1.5.0-3) ...
2021-06-03T19:02:55.0454635Z Setting up libbdplus0:amd64 (0.1.2-3) ...
2021-06-03T19:02:55.0482821Z Setting up libvidstab1.1:amd64 (1.1.0-2) ...
2021-06-03T19:02:55.0502554Z Setting up libflite1:amd64 (2.1-release-3) ...
2021-06-03T19:02:55.0531726Z Setting up libva-drm2:amd64 (2.7.0-2) ...
2021-06-03T19:02:55.0554706Z Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ...
2021-06-03T19:02:55.0574982Z Setting up libasyncns0:amd64 (0.8-6) ...
2021-06-03T19:02:55.0600819Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ...
2021-06-03T19:02:55.0631042Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ...
2021-06-03T19:02:55.0660447Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ...
2021-06-03T19:02:55.0680391Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ...
2021-06-03T19:02:55.0710259Z Setting up libopenal-data (1:1.19.1-1) ...
2021-06-03T19:02:55.0763587Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ...
2021-06-03T19:02:55.0793638Z Setting up libbluray2:amd64 (1:1.2.0-1) ...
2021-06-03T19:02:55.0819781Z Setting up libsamplerate0:amd64 (0.1.9-2) ...
2021-06-03T19:02:55.0990966Z Setting up libva-x11-2:amd64 (2.7.0-2) ...
2021-06-03T19:02:55.1013453Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ...
2021-06-03T19:02:55.1035001Z Setting up libzvbi-common (0.2.35-17) ...
2021-06-03T19:02:55.1054741Z Setting up libmp3lame0:amd64 (3.100-3) ...
2021-06-03T19:02:55.1089250Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ...
2021-06-03T19:02:55.1107911Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ...
2021-06-03T19:02:55.1137090Z Setting up libiec61883-0:amd64 (1.2.0-3) ...
2021-06-03T19:02:55.1163633Z Setting up libserd-0-0:amd64 (0.30.2-1) ...
2021-06-03T19:02:55.1184379Z Setting up libavc1394-0:amd64 (0.5.4-5) ...
2021-06-03T19:02:55.1217635Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ...
2021-06-03T19:02:55.1256649Z Setting up libzvbi0:amd64 (0.2.35-17) ...
2021-06-03T19:02:55.1276725Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ...
2021-06-03T19:02:55.1310677Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ...
2021-06-03T19:02:55.1330502Z Setting up libopenal1:amd64 (1:1.19.1-1) ...
2021-06-03T19:02:55.1371055Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.1399107Z Setting up va-driver-all:amd64 (2.7.0-2) ...
2021-06-03T19:02:55.1433053Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.1451739Z Setting up librubberband2:amd64 (1.8.2-1build1) ...
2021-06-03T19:02:55.1499544Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ...
2021-06-03T19:02:55.1530798Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ...
2021-06-03T19:02:55.1573063Z Setting up libsord-0-0:amd64 (0.16.4-1) ...
2021-06-03T19:02:55.1617651Z Setting up libsratom-0-0:amd64 (0.6.4-1) ...
2021-06-03T19:02:55.1659830Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.1688819Z Setting up libsndfile1:amd64 (1.0.28-7) ...
2021-06-03T19:02:55.1724116Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ...
2021-06-03T19:02:55.1762064Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ...
2021-06-03T19:02:55.1862561Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.1888647Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.1917960Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.1940872Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ...
2021-06-03T19:02:55.1958217Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ...
2021-06-03T19:02:55.1983064Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.2016668Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.2046935Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.2079980Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ...
2021-06-03T19:02:55.2162916Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:02:56.1799296Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:02:57.8798563Z Reading package lists...
2021-06-03T19:02:58.0223437Z Building dependency tree...
2021-06-03T19:02:58.0240332Z Reading state information...
2021-06-03T19:02:58.1633793Z The following additional packages will be installed:
2021-06-03T19:02:58.1636212Z   libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev
2021-06-03T19:02:58.2131542Z The following NEW packages will be installed:
2021-06-03T19:02:58.2133545Z   libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev
2021-06-03T19:02:58.2136914Z   libmagick++-dev
2021-06-03T19:02:58.2378175Z 0 upgraded, 4 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:02:58.2378933Z Need to get 309 kB of archives.
2021-06-03T19:02:58.2379893Z After this operation, 2202 kB of additional disk space will be used.
2021-06-03T19:02:58.2381912Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB]
2021-06-03T19:02:59.0662878Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB]
2021-06-03T19:02:59.0671363Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB]
2021-06-03T19:02:59.0673553Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B]
2021-06-03T19:02:59.0674934Z Fetched 309 kB in 0s (5681 kB/s)
2021-06-03T19:02:59.0675996Z Selecting previously unselected package libmagick++-6-headers.
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2021-06-03T19:02:59.0688642Z (Reading database ... 243215 files and directories currently installed.)
2021-06-03T19:02:59.0689968Z Preparing to unpack .../libmagick++-6-headers_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ...
2021-06-03T19:02:59.0691257Z Unpacking libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0692474Z Selecting previously unselected package libmagick++-6.q16-8:amd64.
2021-06-03T19:02:59.0693809Z Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ...
2021-06-03T19:02:59.0695057Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0696488Z Selecting previously unselected package libmagick++-6.q16-dev:amd64.
2021-06-03T19:02:59.0697863Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ...
2021-06-03T19:02:59.0699151Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0700321Z Selecting previously unselected package libmagick++-dev.
2021-06-03T19:02:59.0701582Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ...
2021-06-03T19:02:59.0702744Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0703899Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0705090Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0706292Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0707419Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ...
2021-06-03T19:02:59.0708428Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:00.7202487Z Reading package lists...
2021-06-03T19:03:00.8708604Z Building dependency tree...
2021-06-03T19:03:00.8728150Z Reading state information...
2021-06-03T19:03:01.0116807Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2).
2021-06-03T19:03:01.0118610Z The following additional packages will be installed:
2021-06-03T19:03:01.0120307Z   fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common
2021-06-03T19:03:01.0121562Z   libijs-0.35 libjbig2dec0
2021-06-03T19:03:01.0124380Z Suggested packages:
2021-06-03T19:03:01.0125951Z   fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre
2021-06-03T19:03:01.0127089Z   ghostscript-x
2021-06-03T19:03:01.0596912Z The following NEW packages will be installed:
2021-06-03T19:03:01.0601751Z   fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9
2021-06-03T19:03:01.0609708Z   libgs9-common libijs-0.35 libjbig2dec0
2021-06-03T19:03:01.1578787Z 0 upgraded, 8 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:01.1579893Z Need to get 11.2 MB of archives.
2021-06-03T19:03:01.1580720Z After this operation, 39.1 MB of additional disk space will be used.
2021-06-03T19:03:01.1583005Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB]
2021-06-03T19:03:01.1756356Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB]
2021-06-03T19:03:01.1769574Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB]
2021-06-03T19:03:01.2313752Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB]
2021-06-03T19:03:01.2391121Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB]
2021-06-03T19:03:01.2396342Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB]
2021-06-03T19:03:01.2405168Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB]
2021-06-03T19:03:01.2610986Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB]
2021-06-03T19:03:01.6443779Z Fetched 11.2 MB in 0s (57.1 MB/s)
2021-06-03T19:03:01.6744214Z Selecting previously unselected package fonts-droid-fallback.
2021-06-03T19:03:01.6816950Z (Reading database ... 
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2021-06-03T19:03:01.7921968Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ...
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2021-06-03T19:03:03.0851256Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ...
2021-06-03T19:03:03.0887547Z Setting up libijs-0.35:amd64 (0.35-15) ...
2021-06-03T19:03:03.0911453Z Setting up fonts-urw-base35 (20170801.1-3) ...
2021-06-03T19:03:03.1491110Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ...
2021-06-03T19:03:03.1516564Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ...
2021-06-03T19:03:03.1744554Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ...
2021-06-03T19:03:03.1761845Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ...
2021-06-03T19:03:03.1788663Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ...
2021-06-03T19:03:03.1893749Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ...
2021-06-03T19:03:03.2837432Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:03.3021309Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:03:05.9082253Z Reading package lists...
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2021-06-03T19:03:06.1881270Z The following additional packages will be installed:
2021-06-03T19:03:06.1883376Z   libudunits2-0 libudunits2-data
2021-06-03T19:03:06.2357309Z The following NEW packages will be installed:
2021-06-03T19:03:06.2359189Z   libudunits2-0 libudunits2-data libudunits2-dev
2021-06-03T19:03:06.2585027Z 0 upgraded, 3 newly installed, 0 to remove and 38 not upgraded.
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2021-06-03T19:03:06.2587317Z After this operation, 1026 kB of additional disk space will be used.
2021-06-03T19:03:06.2589608Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB]
2021-06-03T19:03:06.2658544Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB]
2021-06-03T19:03:06.2746293Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB]
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2021-06-03T19:03:06.8058183Z Preparing to unpack .../libudunits2-data_2.2.26-5_all.deb ...
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2021-06-03T19:03:06.8370692Z Selecting previously unselected package libudunits2-0:amd64.
2021-06-03T19:03:06.8514295Z Preparing to unpack .../libudunits2-0_2.2.26-5_amd64.deb ...
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2021-06-03T19:03:06.9691981Z Setting up libudunits2-data (2.2.26-5) ...
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2021-06-03T19:03:06.9743418Z Setting up libudunits2-dev:amd64 (2.2.26-5) ...
2021-06-03T19:03:06.9766717Z Processing triggers for install-info (6.7.0.dfsg.2-5) ...
2021-06-03T19:03:07.0784316Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:08.7367957Z Reading package lists...
2021-06-03T19:03:08.8873124Z Building dependency tree...
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2021-06-03T19:03:09.0734190Z The following NEW packages will be installed:
2021-06-03T19:03:09.0738286Z   libjq-dev
2021-06-03T19:03:09.0941270Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:09.0942346Z Need to get 11.2 kB of archives.
2021-06-03T19:03:09.0943473Z After this operation, 47.1 kB of additional disk space will be used.
2021-06-03T19:03:09.0945754Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB]
2021-06-03T19:03:09.4707271Z Fetched 11.2 kB in 0s (668 kB/s)
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2021-06-03T19:03:09.6156497Z Preparing to unpack .../libjq-dev_1.6-1ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:03:09.6173990Z Unpacking libjq-dev:amd64 (1.6-1ubuntu0.20.04.1) ...
2021-06-03T19:03:09.6709194Z Setting up libjq-dev:amd64 (1.6-1ubuntu0.20.04.1) ...
2021-06-03T19:03:11.3085137Z Reading package lists...
2021-06-03T19:03:11.4552213Z Building dependency tree...
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2021-06-03T19:03:11.6424579Z The following NEW packages will be installed:
2021-06-03T19:03:11.6430012Z   libmng2
2021-06-03T19:03:11.6763579Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:11.6764529Z Need to get 168 kB of archives.
2021-06-03T19:03:11.6765890Z After this operation, 571 kB of additional disk space will be used.
2021-06-03T19:03:11.6767978Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB]
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2021-06-03T19:03:12.2139354Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ...
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2021-06-03T19:03:12.2866473Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:13.9464095Z Reading package lists...
2021-06-03T19:03:14.0966459Z Building dependency tree...
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2021-06-03T19:03:14.2097993Z E: Unable to locate package libmng1
2021-06-03T19:03:14.2681033Z Reading package lists...
2021-06-03T19:03:14.4167403Z Building dependency tree...
2021-06-03T19:03:14.4184682Z Reading state information...
2021-06-03T19:03:14.5310768Z E: Unable to locate package libapparmor-devel
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2021-06-03T19:03:14.7403837Z Building dependency tree...
2021-06-03T19:03:14.7422291Z Reading state information...
2021-06-03T19:03:14.8818598Z The following additional packages will be installed:
2021-06-03T19:03:14.8820121Z   libij-java
2021-06-03T19:03:14.9280580Z The following NEW packages will be installed:
2021-06-03T19:03:14.9284372Z   imagej libij-java
2021-06-03T19:03:14.9687130Z 0 upgraded, 2 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:14.9687877Z Need to get 2328 kB of archives.
2021-06-03T19:03:14.9688781Z After this operation, 2498 kB of additional disk space will be used.
2021-06-03T19:03:14.9690729Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB]
2021-06-03T19:03:15.1157706Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB]
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2021-06-03T19:03:15.6462259Z Preparing to unpack .../libij-java_1.52r-1_all.deb ...
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2021-06-03T19:03:15.7248018Z Selecting previously unselected package imagej.
2021-06-03T19:03:15.7440154Z Preparing to unpack .../imagej_1.52r-1_all.deb ...
2021-06-03T19:03:15.7448887Z Unpacking imagej (1.52r-1) ...
2021-06-03T19:03:15.8045369Z Setting up libij-java (1.52r-1) ...
2021-06-03T19:03:15.8071540Z Setting up imagej (1.52r-1) ...
2021-06-03T19:03:15.8095293Z Processing triggers for hicolor-icon-theme (0.17-2) ...
2021-06-03T19:03:15.8675150Z Processing triggers for man-db (2.9.1-1) ...
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2021-06-03T19:03:18.1929319Z Reading package lists...
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2021-06-03T19:03:18.3524753Z Reading state information...
2021-06-03T19:03:18.4915079Z Suggested packages:
2021-06-03T19:03:18.4917851Z   bowtie2-examples
2021-06-03T19:03:18.5371361Z The following NEW packages will be installed:
2021-06-03T19:03:18.5380095Z   bowtie2
2021-06-03T19:03:18.5824435Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:18.5825290Z Need to get 1324 kB of archives.
2021-06-03T19:03:18.5826094Z After this operation, 5630 kB of additional disk space will be used.
2021-06-03T19:03:18.5828178Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB]
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2021-06-03T19:03:19.2253860Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ...
2021-06-03T19:03:19.2263654Z Unpacking bowtie2 (2.3.5.1-6build1) ...
2021-06-03T19:03:19.4020753Z Setting up bowtie2 (2.3.5.1-6build1) ...
2021-06-03T19:03:19.4046451Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:03:21.8407804Z Reading package lists...
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2021-06-03T19:03:22.1093513Z E: Unable to locate package install
2021-06-03T19:03:23.0716470Z E: Unable to locate package gdal
2021-06-03T19:03:23.0717205Z Reading package lists...
2021-06-03T19:03:23.0726854Z E: Package 'insighttoolkit4-python' has no installation candidate
2021-06-03T19:03:23.0727761Z Building dependency tree...
2021-06-03T19:03:23.0728807Z Reading state information...
2021-06-03T19:03:23.0730106Z Package insighttoolkit4-python is not available, but is referred to by another package.
2021-06-03T19:03:23.0731227Z This may mean that the package is missing, has been obsoleted, or
2021-06-03T19:03:23.0732011Z is only available from another source
2021-06-03T19:03:23.0732397Z 
2021-06-03T19:03:23.0732855Z Reading package lists...
2021-06-03T19:03:23.0733454Z Building dependency tree...
2021-06-03T19:03:23.0734069Z Reading state information...
2021-06-03T19:03:23.0735175Z Package libav-tools is not available, but is referred to by another package.
2021-06-03T19:03:23.0736174Z This may mean that the package is missing, has been obsoleted, or
2021-06-03T19:03:23.0736934Z is only available from another source
2021-06-03T19:03:23.0737654Z However the following packages replace it:
2021-06-03T19:03:23.0738208Z   ffmpeg
2021-06-03T19:03:23.0738460Z 
2021-06-03T19:03:23.0738927Z Reading package lists...
2021-06-03T19:03:23.0739519Z Building dependency tree...
2021-06-03T19:03:23.0740134Z Reading state information...
2021-06-03T19:03:23.0741396Z E: Package 'libav-tools' has no installation candidate
2021-06-03T19:03:23.1273821Z The following additional packages will be installed:
2021-06-03T19:03:23.1276163Z   libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev
2021-06-03T19:03:23.1277999Z   libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0
2021-06-03T19:03:23.1279265Z   libssh2-1-dev
2021-06-03T19:03:23.1280803Z Suggested packages:
2021-06-03T19:03:23.1281796Z   libgcrypt20-doc libmbedtls-doc
2021-06-03T19:03:23.1753285Z The following NEW packages will be installed:
2021-06-03T19:03:23.1755349Z   libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev
2021-06-03T19:03:23.1756965Z   libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0
2021-06-03T19:03:23.1758103Z   libssh2-1-dev
2021-06-03T19:03:23.2125434Z 0 upgraded, 11 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:23.2126493Z Need to get 2667 kB of archives.
2021-06-03T19:03:23.2127270Z After this operation, 11.2 MB of additional disk space will be used.
2021-06-03T19:03:23.2129121Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB]
2021-06-03T19:03:23.2161232Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB]
2021-06-03T19:03:23.2286698Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB]
2021-06-03T19:03:23.2373456Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB]
2021-06-03T19:03:23.2521225Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB]
2021-06-03T19:03:23.2599973Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB]
2021-06-03T19:03:23.2693947Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB]
2021-06-03T19:03:23.2893558Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB]
2021-06-03T19:03:23.3098601Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB]
2021-06-03T19:03:23.3278501Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB]
2021-06-03T19:03:23.3357559Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB]
2021-06-03T19:03:23.7448292Z Fetched 2667 kB in 0s (14.7 MB/s)
2021-06-03T19:03:23.7725247Z Selecting previously unselected package libgpg-error-dev.
2021-06-03T19:03:23.7795381Z (Reading database ... 
2021-06-03T19:03:23.7796051Z (Reading database ... 5%
2021-06-03T19:03:23.7796673Z (Reading database ... 10%
2021-06-03T19:03:23.7797277Z (Reading database ... 15%
2021-06-03T19:03:23.7797841Z (Reading database ... 20%
2021-06-03T19:03:23.7798444Z (Reading database ... 25%
2021-06-03T19:03:23.7799005Z (Reading database ... 30%
2021-06-03T19:03:23.7799574Z (Reading database ... 35%
2021-06-03T19:03:23.7800157Z (Reading database ... 40%
2021-06-03T19:03:23.7800727Z (Reading database ... 45%
2021-06-03T19:03:23.7801282Z (Reading database ... 50%
2021-06-03T19:03:23.7896843Z (Reading database ... 55%
2021-06-03T19:03:23.7938346Z (Reading database ... 60%
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2021-06-03T19:03:23.8025024Z (Reading database ... 70%
2021-06-03T19:03:23.8052737Z (Reading database ... 75%
2021-06-03T19:03:23.8083321Z (Reading database ... 80%
2021-06-03T19:03:23.8398316Z (Reading database ... 85%
2021-06-03T19:03:23.8482673Z (Reading database ... 90%
2021-06-03T19:03:23.8796568Z (Reading database ... 95%
2021-06-03T19:03:23.8797617Z (Reading database ... 100%
2021-06-03T19:03:23.8798629Z (Reading database ... 243914 files and directories currently installed.)
2021-06-03T19:03:23.8890180Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ...
2021-06-03T19:03:23.8898469Z Unpacking libgpg-error-dev (1.37-1) ...
2021-06-03T19:03:23.9226738Z Selecting previously unselected package libgcrypt20-dev.
2021-06-03T19:03:23.9451211Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ...
2021-06-03T19:03:23.9458461Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ...
2021-06-03T19:03:24.0208359Z Selecting previously unselected package libhttp-parser2.9:amd64.
2021-06-03T19:03:24.0344339Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ...
2021-06-03T19:03:24.0360423Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ...
2021-06-03T19:03:24.0599343Z Selecting previously unselected package libmbedcrypto3:amd64.
2021-06-03T19:03:24.0829650Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ...
2021-06-03T19:03:24.0838384Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.1185353Z Selecting previously unselected package libmbedx509-0:amd64.
2021-06-03T19:03:24.1414406Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ...
2021-06-03T19:03:24.1422830Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.1726601Z Selecting previously unselected package libmbedtls12:amd64.
2021-06-03T19:03:24.1894942Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ...
2021-06-03T19:03:24.1904409Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.2286976Z Selecting previously unselected package libgit2-28:amd64.
2021-06-03T19:03:24.2440335Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ...
2021-06-03T19:03:24.2447847Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ...
2021-06-03T19:03:24.3087216Z Selecting previously unselected package libmbedtls-dev:amd64.
2021-06-03T19:03:24.3267409Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ...
2021-06-03T19:03:24.3275604Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.4007684Z Selecting previously unselected package libssh2-1-dev:amd64.
2021-06-03T19:03:24.4148986Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ...
2021-06-03T19:03:24.4160553Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ...
2021-06-03T19:03:24.4687530Z Selecting previously unselected package libhttp-parser-dev.
2021-06-03T19:03:24.4878935Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ...
2021-06-03T19:03:24.4888049Z Unpacking libhttp-parser-dev (2.9.2-2) ...
2021-06-03T19:03:24.5128465Z Selecting previously unselected package libgit2-dev:amd64.
2021-06-03T19:03:24.5360553Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ...
2021-06-03T19:03:24.5368055Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ...
2021-06-03T19:03:24.6513599Z Setting up libgpg-error-dev (1.37-1) ...
2021-06-03T19:03:24.6538819Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.6563551Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ...
2021-06-03T19:03:24.6585929Z Setting up libhttp-parser-dev (2.9.2-2) ...
2021-06-03T19:03:24.6606598Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.6628632Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.6653908Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ...
2021-06-03T19:03:24.6674341Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ...
2021-06-03T19:03:24.6694381Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ...
2021-06-03T19:03:24.6715416Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ...
2021-06-03T19:03:24.6737956Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ...
2021-06-03T19:03:24.6764249Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:03:29.2111192Z Processing triggers for install-info (6.7.0.dfsg.2-5) ...
2021-06-03T19:03:29.3128308Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:30.9572727Z Reading package lists...
2021-06-03T19:03:31.1080752Z Building dependency tree...
2021-06-03T19:03:31.1099587Z Reading state information...
2021-06-03T19:03:31.3395949Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1).
2021-06-03T19:03:31.3397337Z libtiff-dev set to manually installed.
2021-06-03T19:03:31.3398374Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:31.3982468Z Reading package lists...
2021-06-03T19:03:31.5378163Z Building dependency tree...
2021-06-03T19:03:31.5397128Z Reading state information...
2021-06-03T19:03:31.7492518Z unixodbc-dev is already the newest version (2.3.7).
2021-06-03T19:03:31.7493643Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:31.8079375Z Reading package lists...
2021-06-03T19:03:31.9494444Z Building dependency tree...
2021-06-03T19:03:31.9511172Z Reading state information...
2021-06-03T19:03:32.1372075Z The following NEW packages will be installed:
2021-06-03T19:03:32.1374733Z   libsodium-dev
2021-06-03T19:03:32.1658857Z 0 upgraded, 1 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:32.1659935Z Need to get 169 kB of archives.
2021-06-03T19:03:32.1660765Z After this operation, 826 kB of additional disk space will be used.
2021-06-03T19:03:32.1662734Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB]
2021-06-03T19:03:32.5683306Z Fetched 169 kB in 0s (3399 kB/s)
2021-06-03T19:03:32.5953351Z Selecting previously unselected package libsodium-dev:amd64.
2021-06-03T19:03:32.6023647Z (Reading database ... 
2021-06-03T19:03:32.6024353Z (Reading database ... 5%
2021-06-03T19:03:32.6025042Z (Reading database ... 10%
2021-06-03T19:03:32.6025689Z (Reading database ... 15%
2021-06-03T19:03:32.6026338Z (Reading database ... 20%
2021-06-03T19:03:32.6026976Z (Reading database ... 25%
2021-06-03T19:03:32.6027607Z (Reading database ... 30%
2021-06-03T19:03:32.6028229Z (Reading database ... 35%
2021-06-03T19:03:32.6028856Z (Reading database ... 40%
2021-06-03T19:03:32.6029502Z (Reading database ... 45%
2021-06-03T19:03:32.6030131Z (Reading database ... 50%
2021-06-03T19:03:32.6111421Z (Reading database ... 55%
2021-06-03T19:03:32.6146678Z (Reading database ... 60%
2021-06-03T19:03:32.6205106Z (Reading database ... 65%
2021-06-03T19:03:32.6233389Z (Reading database ... 70%
2021-06-03T19:03:32.6258185Z (Reading database ... 75%
2021-06-03T19:03:32.6286268Z (Reading database ... 80%
2021-06-03T19:03:32.6587629Z (Reading database ... 85%
2021-06-03T19:03:32.6668869Z (Reading database ... 90%
2021-06-03T19:03:32.6961288Z (Reading database ... 95%
2021-06-03T19:03:32.6963351Z (Reading database ... 100%
2021-06-03T19:03:32.6965865Z (Reading database ... 244417 files and directories currently installed.)
2021-06-03T19:03:32.7050562Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ...
2021-06-03T19:03:32.7066278Z Unpacking libsodium-dev:amd64 (1.0.18-1) ...
2021-06-03T19:03:32.7773235Z Setting up libsodium-dev:amd64 (1.0.18-1) ...
2021-06-03T19:03:34.4033248Z Reading package lists...
2021-06-03T19:03:34.5416568Z Building dependency tree...
2021-06-03T19:03:34.5433673Z Reading state information...
2021-06-03T19:03:34.6782666Z The following additional packages will be installed:
2021-06-03T19:03:34.6785650Z   libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd
2021-06-03T19:03:34.7240906Z The following NEW packages will be installed:
2021-06-03T19:03:34.7244377Z   libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4
2021-06-03T19:03:34.7246198Z   tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd
2021-06-03T19:03:34.7409605Z 0 upgraded, 8 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:34.7410607Z Need to get 10.4 MB of archives.
2021-06-03T19:03:34.7411735Z After this operation, 38.0 MB of additional disk space will be used.
2021-06-03T19:03:34.7413475Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB]
2021-06-03T19:03:34.7506883Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB]
2021-06-03T19:03:34.7719651Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB]
2021-06-03T19:03:34.8339835Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB]
2021-06-03T19:03:34.8583992Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB]
2021-06-03T19:03:34.9471322Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB]
2021-06-03T19:03:35.0192791Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB]
2021-06-03T19:03:35.1981150Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB]
2021-06-03T19:03:35.5869423Z Fetched 10.4 MB in 0s (21.7 MB/s)
2021-06-03T19:03:35.6144189Z Selecting previously unselected package libarchive-dev:amd64.
2021-06-03T19:03:35.6213237Z (Reading database ... 
2021-06-03T19:03:35.6214069Z (Reading database ... 5%
2021-06-03T19:03:35.6214731Z (Reading database ... 10%
2021-06-03T19:03:35.6215373Z (Reading database ... 15%
2021-06-03T19:03:35.6215996Z (Reading database ... 20%
2021-06-03T19:03:35.6216646Z (Reading database ... 25%
2021-06-03T19:03:35.6217282Z (Reading database ... 30%
2021-06-03T19:03:35.6217949Z (Reading database ... 35%
2021-06-03T19:03:35.6218579Z (Reading database ... 40%
2021-06-03T19:03:35.6219210Z (Reading database ... 45%
2021-06-03T19:03:35.6219827Z (Reading database ... 50%
2021-06-03T19:03:35.6315793Z (Reading database ... 55%
2021-06-03T19:03:35.6351641Z (Reading database ... 60%
2021-06-03T19:03:35.6407767Z (Reading database ... 65%
2021-06-03T19:03:35.6437610Z (Reading database ... 70%
2021-06-03T19:03:35.6462521Z (Reading database ... 75%
2021-06-03T19:03:35.6491021Z (Reading database ... 80%
2021-06-03T19:03:35.6801416Z (Reading database ... 85%
2021-06-03T19:03:35.6886833Z (Reading database ... 90%
2021-06-03T19:03:35.7189509Z (Reading database ... 95%
2021-06-03T19:03:35.7192697Z (Reading database ... 100%
2021-06-03T19:03:35.7193544Z (Reading database ... 244487 files and directories currently installed.)
2021-06-03T19:03:35.7282447Z Preparing to unpack .../0-libarchive-dev_3.4.0-2ubuntu1_amd64.deb ...
2021-06-03T19:03:35.7296068Z Unpacking libarchive-dev:amd64 (3.4.0-2ubuntu1) ...
2021-06-03T19:03:35.8007983Z Selecting previously unselected package liblept5:amd64.
2021-06-03T19:03:35.8184172Z Preparing to unpack .../1-liblept5_1.79.0-1_amd64.deb ...
2021-06-03T19:03:35.8205842Z Unpacking liblept5:amd64 (1.79.0-1) ...
2021-06-03T19:03:35.9327994Z Selecting previously unselected package libleptonica-dev:amd64.
2021-06-03T19:03:35.9533040Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ...
2021-06-03T19:03:35.9540579Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ...
2021-06-03T19:03:36.0967233Z Selecting previously unselected package libtesseract4:amd64.
2021-06-03T19:03:36.1136360Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ...
2021-06-03T19:03:36.1150160Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ...
2021-06-03T19:03:36.2449371Z Selecting previously unselected package libtesseract-dev:amd64.
2021-06-03T19:03:36.2664835Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ...
2021-06-03T19:03:36.2675772Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ...
2021-06-03T19:03:36.4306383Z Selecting previously unselected package tesseract-ocr-eng.
2021-06-03T19:03:36.4482976Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ...
2021-06-03T19:03:36.4491742Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ...
2021-06-03T19:03:36.6048522Z Selecting previously unselected package tesseract-ocr-osd.
2021-06-03T19:03:36.6248966Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ...
2021-06-03T19:03:36.6261227Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ...
2021-06-03T19:03:36.9567303Z Selecting previously unselected package tesseract-ocr.
2021-06-03T19:03:36.9769564Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ...
2021-06-03T19:03:36.9776216Z Unpacking tesseract-ocr (4.1.1-2build2) ...
2021-06-03T19:03:37.0561318Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ...
2021-06-03T19:03:37.0584972Z Setting up liblept5:amd64 (1.79.0-1) ...
2021-06-03T19:03:37.0607891Z Setting up libleptonica-dev:amd64 (1.79.0-1) ...
2021-06-03T19:03:37.0627984Z Setting up libtesseract4:amd64 (4.1.1-2build2) ...
2021-06-03T19:03:37.0645418Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ...
2021-06-03T19:03:37.0662399Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ...
2021-06-03T19:03:37.0681495Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ...
2021-06-03T19:03:37.0698533Z Setting up tesseract-ocr (4.1.1-2build2) ...
2021-06-03T19:03:37.0720228Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:03:39.8336338Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:41.4921063Z Reading package lists...
2021-06-03T19:03:41.6408166Z Building dependency tree...
2021-06-03T19:03:41.6425749Z Reading state information...
2021-06-03T19:03:41.8546691Z wget is already the newest version (1.20.3-1ubuntu1).
2021-06-03T19:03:41.8547828Z 0 upgraded, 0 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:41.9127828Z Reading package lists...
2021-06-03T19:03:42.0537158Z Building dependency tree...
2021-06-03T19:03:42.0556565Z Reading state information...
2021-06-03T19:03:42.1940406Z The following additional packages will be installed:
2021-06-03T19:03:42.1945055Z   comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11
2021-06-03T19:03:42.1964228Z   libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev
2021-06-03T19:03:42.2015634Z Suggested packages:
2021-06-03T19:03:42.2018519Z   doc-base krb5-doc krb5-user libnorm-doc
2021-06-03T19:03:42.2446777Z The following NEW packages will be installed:
2021-06-03T19:03:42.2449963Z   comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11
2021-06-03T19:03:42.2453284Z   libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev
2021-06-03T19:03:42.2635542Z 0 upgraded, 10 newly installed, 0 to remove and 38 not upgraded.
2021-06-03T19:03:42.2637030Z Need to get 1459 kB of archives.
2021-06-03T19:03:42.2637888Z After this operation, 7754 kB of additional disk space will be used.
2021-06-03T19:03:42.2640330Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB]
2021-06-03T19:03:42.2835278Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB]
2021-06-03T19:03:42.2845014Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB]
2021-06-03T19:03:42.2865865Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB]
2021-06-03T19:03:42.2871486Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB]
2021-06-03T19:03:42.2878484Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB]
2021-06-03T19:03:42.2962740Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB]
2021-06-03T19:03:42.3174938Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB]
2021-06-03T19:03:42.3268412Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB]
2021-06-03T19:03:42.3312223Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB]
2021-06-03T19:03:42.7300371Z Fetched 1459 kB in 0s (14.9 MB/s)
2021-06-03T19:03:42.7607494Z Selecting previously unselected package libgssrpc4:amd64.
2021-06-03T19:03:42.7674535Z (Reading database ... 
2021-06-03T19:03:42.7675248Z (Reading database ... 5%
2021-06-03T19:03:42.7675916Z (Reading database ... 10%
2021-06-03T19:03:42.7676564Z (Reading database ... 15%
2021-06-03T19:03:42.7677210Z (Reading database ... 20%
2021-06-03T19:03:42.7677836Z (Reading database ... 25%
2021-06-03T19:03:42.7678488Z (Reading database ... 30%
2021-06-03T19:03:42.7679126Z (Reading database ... 35%
2021-06-03T19:03:42.7679745Z (Reading database ... 40%
2021-06-03T19:03:42.7680376Z (Reading database ... 45%
2021-06-03T19:03:42.7681013Z (Reading database ... 50%
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2021-06-03T19:03:42.7794676Z (Reading database ... 60%
2021-06-03T19:03:42.7826865Z (Reading database ... 65%
2021-06-03T19:03:42.7881280Z (Reading database ... 70%
2021-06-03T19:03:42.7909792Z (Reading database ... 75%
2021-06-03T19:03:42.7942456Z (Reading database ... 80%
2021-06-03T19:03:42.8266267Z (Reading database ... 85%
2021-06-03T19:03:42.8351603Z (Reading database ... 90%
2021-06-03T19:03:42.8659144Z (Reading database ... 95%
2021-06-03T19:03:42.8661196Z (Reading database ... 100%
2021-06-03T19:03:42.8663355Z (Reading database ... 244712 files and directories currently installed.)
2021-06-03T19:03:42.8752603Z Preparing to unpack .../0-libgssrpc4_1.17-6ubuntu4.1_amd64.deb ...
2021-06-03T19:03:42.8769885Z Unpacking libgssrpc4:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:42.9088236Z Selecting previously unselected package libkdb5-9:amd64.
2021-06-03T19:03:42.9266437Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ...
2021-06-03T19:03:42.9278142Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:42.9568005Z Selecting previously unselected package libkadm5srv-mit11:amd64.
2021-06-03T19:03:42.9761690Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ...
2021-06-03T19:03:42.9770957Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.0087969Z Selecting previously unselected package libkadm5clnt-mit11:amd64.
2021-06-03T19:03:43.0262582Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ...
2021-06-03T19:03:43.0275017Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.0607252Z Selecting previously unselected package comerr-dev:amd64.
2021-06-03T19:03:43.0753946Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ...
2021-06-03T19:03:43.0784061Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ...
2021-06-03T19:03:43.1088128Z Selecting previously unselected package krb5-multidev:amd64.
2021-06-03T19:03:43.1271068Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ...
2021-06-03T19:03:43.1279306Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.1687600Z Selecting previously unselected package libnorm-dev:amd64.
2021-06-03T19:03:43.1836835Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ...
2021-06-03T19:03:43.1846202Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ...
2021-06-03T19:03:43.2568124Z Selecting previously unselected package libpgm-dev:amd64.
2021-06-03T19:03:43.2734826Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ...
2021-06-03T19:03:43.2832466Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ...
2021-06-03T19:03:43.3287462Z Selecting previously unselected package libkrb5-dev:amd64.
2021-06-03T19:03:43.3443238Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ...
2021-06-03T19:03:43.3452724Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.3703469Z Selecting previously unselected package libzmq3-dev:amd64.
2021-06-03T19:03:43.3935077Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ...
2021-06-03T19:03:43.3944615Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ...
2021-06-03T19:03:43.4919583Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ...
2021-06-03T19:03:43.4947193Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.4967201Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ...
2021-06-03T19:03:43.5004099Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ...
2021-06-03T19:03:43.5042999Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.5068745Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.5093489Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.5116630Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.5140896Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ...
2021-06-03T19:03:43.5162338Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ...
2021-06-03T19:03:43.5191246Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:43.5376867Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:03:46.5071489Z Processing triggers for install-info (6.7.0.dfsg.2-5) ...
2021-06-03T19:03:48.2868421Z Reading package lists...
2021-06-03T19:03:48.4444522Z Building dependency tree...
2021-06-03T19:03:48.4463550Z Reading state information...
2021-06-03T19:03:48.5613367Z E: Unable to locate package udunits
2021-06-03T19:03:48.6202504Z Reading package lists...
2021-06-03T19:03:48.7747504Z Building dependency tree...
2021-06-03T19:03:48.7765279Z Reading state information...
2021-06-03T19:03:48.9144145Z The following additional packages will be installed:
2021-06-03T19:03:48.9146737Z   libwebp6 libwebpdemux2 libwebpmux3
2021-06-03T19:03:48.9631519Z The following NEW packages will be installed:
2021-06-03T19:03:48.9633638Z   libwebp-dev libwebpdemux2
2021-06-03T19:03:48.9639405Z The following packages will be upgraded:
2021-06-03T19:03:48.9641510Z   libwebp6 libwebpmux3
2021-06-03T19:03:48.9810418Z 2 upgraded, 2 newly installed, 0 to remove and 36 not upgraded.
2021-06-03T19:03:48.9811135Z Need to get 480 kB of archives.
2021-06-03T19:03:48.9811825Z After this operation, 985 kB of additional disk space will be used.
2021-06-03T19:03:48.9813622Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebp6 amd64 0.6.1-2ubuntu0.20.04.1 [185 kB]
2021-06-03T19:03:48.9882217Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebpdemux2 amd64 0.6.1-2ubuntu0.20.04.1 [9576 B]
2021-06-03T19:03:48.9886872Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebpmux3 amd64 0.6.1-2ubuntu0.20.04.1 [19.5 kB]
2021-06-03T19:03:48.9907734Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwebp-dev amd64 0.6.1-2ubuntu0.20.04.1 [266 kB]
2021-06-03T19:03:49.3767553Z Fetched 480 kB in 0s (17.9 MB/s)
2021-06-03T19:03:49.4158519Z (Reading database ... 
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2021-06-03T19:03:49.4162354Z (Reading database ... 40%
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2021-06-03T19:03:49.4246489Z (Reading database ... 55%
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2021-06-03T19:03:49.4328851Z (Reading database ... 65%
2021-06-03T19:03:49.4377893Z (Reading database ... 70%
2021-06-03T19:03:49.4407418Z (Reading database ... 75%
2021-06-03T19:03:49.4439550Z (Reading database ... 80%
2021-06-03T19:03:49.4766847Z (Reading database ... 85%
2021-06-03T19:03:49.4861521Z (Reading database ... 90%
2021-06-03T19:03:49.5169956Z (Reading database ... 95%
2021-06-03T19:03:49.5170608Z (Reading database ... 100%
2021-06-03T19:03:49.5171455Z (Reading database ... 245012 files and directories currently installed.)
2021-06-03T19:03:49.5264245Z Preparing to unpack .../libwebp6_0.6.1-2ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:03:49.5313008Z Unpacking libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) over (0.6.1-2) ...
2021-06-03T19:03:49.5739761Z Selecting previously unselected package libwebpdemux2:amd64.
2021-06-03T19:03:49.5928105Z Preparing to unpack .../libwebpdemux2_0.6.1-2ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:03:49.5937191Z Unpacking libwebpdemux2:amd64 (0.6.1-2ubuntu0.20.04.1) ...
2021-06-03T19:03:49.6396895Z Preparing to unpack .../libwebpmux3_0.6.1-2ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:03:49.6421294Z Unpacking libwebpmux3:amd64 (0.6.1-2ubuntu0.20.04.1) over (0.6.1-2) ...
2021-06-03T19:03:49.6727257Z Selecting previously unselected package libwebp-dev:amd64.
2021-06-03T19:03:49.6872608Z Preparing to unpack .../libwebp-dev_0.6.1-2ubuntu0.20.04.1_amd64.deb ...
2021-06-03T19:03:49.6880284Z Unpacking libwebp-dev:amd64 (0.6.1-2ubuntu0.20.04.1) ...
2021-06-03T19:03:50.5780517Z Setting up libwebp6:amd64 (0.6.1-2ubuntu0.20.04.1) ...
2021-06-03T19:03:50.5782696Z Setting up libwebpmux3:amd64 (0.6.1-2ubuntu0.20.04.1) ...
2021-06-03T19:03:50.5784035Z Setting up libwebpdemux2:amd64 (0.6.1-2ubuntu0.20.04.1) ...
2021-06-03T19:03:50.5785238Z Setting up libwebp-dev:amd64 (0.6.1-2ubuntu0.20.04.1) ...
2021-06-03T19:03:50.5786405Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:03:51.4380452Z Reading package lists...
2021-06-03T19:03:51.5884200Z Building dependency tree...
2021-06-03T19:03:51.5903099Z Reading state information...
2021-06-03T19:03:51.7312702Z The following additional packages will be installed:
2021-06-03T19:03:51.7315469Z   gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2
2021-06-03T19:03:51.7317370Z   libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47
2021-06-03T19:03:51.7319519Z   libstd-rust-dev libxxhash0 rust-gdb rustc
2021-06-03T19:03:51.7325041Z Suggested packages:
2021-06-03T19:03:51.7326222Z   cargo-doc gdb-doc gdbserver rust-doc rust-src
2021-06-03T19:03:51.7326903Z Recommended packages:
2021-06-03T19:03:51.7327383Z   cargo
2021-06-03T19:03:51.7835350Z The following NEW packages will be installed:
2021-06-03T19:03:51.7841762Z   cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2
2021-06-03T19:03:51.7843368Z   libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47
2021-06-03T19:03:51.7846073Z   libstd-rust-dev libxxhash0 rust-gdb rustc
2021-06-03T19:03:51.8065316Z 0 upgraded, 13 newly installed, 0 to remove and 36 not upgraded.
2021-06-03T19:03:51.8066054Z Need to get 108 MB of archives.
2021-06-03T19:03:51.8067063Z After this operation, 501 MB of additional disk space will be used.
2021-06-03T19:03:51.8068892Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB]
2021-06-03T19:03:51.8105952Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB]
2021-06-03T19:03:51.8115422Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB]
2021-06-03T19:03:51.8130079Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB]
2021-06-03T19:03:51.8208174Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB]
2021-06-03T19:03:51.8250301Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB]
2021-06-03T19:03:51.8313102Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB]
2021-06-03T19:03:52.0418339Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB]
2021-06-03T19:03:54.4511775Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB]
2021-06-03T19:03:55.2961371Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB]
2021-06-03T19:03:55.3139268Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB]
2021-06-03T19:03:55.4545678Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB]
2021-06-03T19:03:55.8336771Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB]
2021-06-03T19:03:56.2245372Z Fetched 108 MB in 4s (26.7 MB/s)
2021-06-03T19:03:56.2529695Z Selecting previously unselected package libbabeltrace1:amd64.
2021-06-03T19:03:56.2601276Z (Reading database ... 
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2021-06-03T19:03:56.3184925Z (Reading database ... 85%
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2021-06-03T19:03:56.3601984Z (Reading database ... 95%
2021-06-03T19:03:56.3602875Z (Reading database ... 100%
2021-06-03T19:03:56.3603857Z (Reading database ... 245040 files and directories currently installed.)
2021-06-03T19:03:56.3691340Z Preparing to unpack .../00-libbabeltrace1_1.5.8-1build1_amd64.deb ...
2021-06-03T19:03:56.3707461Z Unpacking libbabeltrace1:amd64 (1.5.8-1build1) ...
2021-06-03T19:03:56.4078409Z Selecting previously unselected package libipt2.
2021-06-03T19:03:56.4311282Z Preparing to unpack .../01-libipt2_2.0.1-1_amd64.deb ...
2021-06-03T19:03:56.4318611Z Unpacking libipt2 (2.0.1-1) ...
2021-06-03T19:03:56.4647389Z Selecting previously unselected package libsource-highlight-common.
2021-06-03T19:03:56.4794622Z Preparing to unpack .../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ...
2021-06-03T19:03:56.4804595Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ...
2021-06-03T19:03:56.5167225Z Selecting previously unselected package libboost-regex1.71.0:amd64.
2021-06-03T19:03:56.5398435Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ...
2021-06-03T19:03:56.5408506Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ...
2021-06-03T19:03:56.6087389Z Selecting previously unselected package libsource-highlight4v5.
2021-06-03T19:03:56.6286797Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ...
2021-06-03T19:03:56.6296079Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ...
2021-06-03T19:03:56.6716766Z Selecting previously unselected package libxxhash0:amd64.
2021-06-03T19:03:56.6949120Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ...
2021-06-03T19:03:56.6959964Z Unpacking libxxhash0:amd64 (0.7.3-1) ...
2021-06-03T19:03:56.7168235Z Selecting previously unselected package gdb.
2021-06-03T19:03:56.7400661Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ...
2021-06-03T19:03:56.7408232Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ...
2021-06-03T19:03:57.0447943Z Selecting previously unselected package libstd-rust-1.47:amd64.
2021-06-03T19:03:57.0596090Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ...
2021-06-03T19:03:57.0605921Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:03.0647375Z Selecting previously unselected package libstd-rust-dev:amd64.
2021-06-03T19:04:03.0843521Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ...
2021-06-03T19:04:03.0852529Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:05.8046839Z Selecting previously unselected package rustc.
2021-06-03T19:04:05.8246115Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ...
2021-06-03T19:04:05.8253342Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:05.9962109Z Selecting previously unselected package cargo.
2021-06-03T19:04:06.0192176Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ...
2021-06-03T19:04:06.0203763Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ...
2021-06-03T19:04:06.3678322Z Selecting previously unselected package libc6-dbg:amd64.
2021-06-03T19:04:06.3909522Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ...
2021-06-03T19:04:06.3918391Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ...
2021-06-03T19:04:07.4635336Z Selecting previously unselected package rust-gdb.
2021-06-03T19:04:07.4872302Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ...
2021-06-03T19:04:07.4881859Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:07.5421522Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:07.5484147Z Setting up libsource-highlight-common (3.1.8-1.2build5) ...
2021-06-03T19:04:07.5503006Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ...
2021-06-03T19:04:07.5521888Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:07.5540557Z Setting up libipt2 (2.0.1-1) ...
2021-06-03T19:04:07.5560506Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ...
2021-06-03T19:04:07.5582531Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ...
2021-06-03T19:04:07.5604646Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:07.5625930Z Setting up libxxhash0:amd64 (0.7.3-1) ...
2021-06-03T19:04:07.5644428Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ...
2021-06-03T19:04:07.5664523Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ...
2021-06-03T19:04:07.5682564Z Setting up gdb (10.2-0ubuntu1~20.04~1) ...
2021-06-03T19:04:07.5707594Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ...
2021-06-03T19:04:07.5738175Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:04:07.5938564Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:04:10.4005024Z Reading package lists...
2021-06-03T19:04:10.5491381Z Building dependency tree...
2021-06-03T19:04:10.5509438Z Reading state information...
2021-06-03T19:04:10.7011830Z The following additional packages will be installed:
2021-06-03T19:04:10.7014209Z   avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring
2021-06-03T19:04:10.7016174Z   gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base
2021-06-03T19:04:10.7020357Z   iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7
2021-06-03T19:04:10.7022585Z   libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25
2021-06-03T19:04:10.7024822Z   libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1
2021-06-03T19:04:10.7026963Z   libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0
2021-06-03T19:04:10.7029637Z   libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0
2021-06-03T19:04:10.7031359Z   libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt
2021-06-03T19:04:10.7033021Z   libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui
2021-06-03T19:04:10.7034597Z   libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4
2021-06-03T19:04:10.7036218Z   libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200
2021-06-03T19:04:10.7037836Z   libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring
2021-06-03T19:04:10.7039548Z   libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge
2021-06-03T19:04:10.7041944Z   libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite
2021-06-03T19:04:10.7043462Z   libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins
2021-06-03T19:04:10.7044844Z   libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4
2021-06-03T19:04:10.7046415Z   libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4
2021-06-03T19:04:10.7047735Z   libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7
2021-06-03T19:04:10.7049156Z   libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n
2021-06-03T19:04:10.7050277Z   libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5
2021-06-03T19:04:10.7051361Z   libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5
2021-06-03T19:04:10.7052523Z   libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5
2021-06-03T19:04:10.7053626Z   libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5
2021-06-03T19:04:10.7054639Z   libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5
2021-06-03T19:04:10.7055703Z   libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5
2021-06-03T19:04:10.7057019Z   libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5
2021-06-03T19:04:10.7058626Z   libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7
2021-06-03T19:04:10.7059931Z   libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0
2021-06-03T19:04:10.7061249Z   libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0
2021-06-03T19:04:10.7062464Z   libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1
2021-06-03T19:04:10.7063620Z   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2
2021-06-03T19:04:10.7064751Z   libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules
2021-06-03T19:04:10.7065991Z   pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4
2021-06-03T19:04:10.7067253Z   python3-cycler python3-dateutil python3-decorator python3-future
2021-06-03T19:04:10.7068583Z   python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core
2021-06-03T19:04:10.7069942Z   python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat
2021-06-03T19:04:10.7071255Z   python3-numpy python3-olefile python3-owslib python3-pil python3-plotly
2021-06-03T19:04:10.7072484Z   python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5
2021-06-03T19:04:10.7073679Z   python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg
2021-06-03T19:04:10.7075139Z   python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying
2021-06-03T19:04:10.7076458Z   python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz
2021-06-03T19:04:10.7077647Z   python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass
2021-06-03T19:04:10.7078863Z   qgis-plugin-grass-common qgis-provider-grass qgis-providers
2021-06-03T19:04:10.7080267Z   qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin
2021-06-03T19:04:10.7081745Z   qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin
2021-06-03T19:04:10.7083003Z   qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme
2021-06-03T19:04:10.7084255Z   qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser
2021-06-03T19:04:10.7085723Z   qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera
2021-06-03T19:04:10.7086874Z   usb-modeswitch usb-modeswitch-data wpasupplicant
2021-06-03T19:04:10.7087544Z Suggested packages:
2021-06-03T19:04:10.7088504Z   avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00
2021-06-03T19:04:10.7089675Z   gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass
2021-06-03T19:04:10.7090947Z   grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins
2021-06-03T19:04:10.7092248Z   libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd
2021-06-03T19:04:10.7093376Z   | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5
2021-06-03T19:04:10.7094590Z   qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc
2021-06-03T19:04:10.7095868Z   python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0
2021-06-03T19:04:10.7097157Z   inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo
2021-06-03T19:04:10.7098382Z   python3-gobject python3-nose python3-scipy python3-tornado
2021-06-03T19:04:10.7099624Z   texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc
2021-06-03T19:04:10.7100991Z   python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg
2021-06-03T19:04:10.7102376Z   python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc
2021-06-03T19:04:10.7103651Z   python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial
2021-06-03T19:04:10.7104600Z   wpagui libengine-pkcs11-openssl
2021-06-03T19:04:10.7917595Z The following NEW packages will be installed:
2021-06-03T19:04:10.7919580Z   avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring
2021-06-03T19:04:10.7921149Z   gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base
2021-06-03T19:04:10.7922679Z   iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7
2021-06-03T19:04:10.7924115Z   libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25
2021-06-03T19:04:10.7926634Z   libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1
2021-06-03T19:04:10.7927929Z   libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0
2021-06-03T19:04:10.7929045Z   libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0
2021-06-03T19:04:10.7930320Z   libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt
2021-06-03T19:04:10.7931614Z   libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui
2021-06-03T19:04:10.7932833Z   libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4
2021-06-03T19:04:10.7934103Z   libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200
2021-06-03T19:04:10.7935367Z   libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring
2021-06-03T19:04:10.7936725Z   libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge
2021-06-03T19:04:10.7938215Z   libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite
2021-06-03T19:04:10.7939641Z   libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins
2021-06-03T19:04:10.7940985Z   libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4
2021-06-03T19:04:10.7942396Z   libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4
2021-06-03T19:04:10.7943704Z   libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7
2021-06-03T19:04:10.7945072Z   libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n
2021-06-03T19:04:10.7946183Z   libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5
2021-06-03T19:04:10.7947242Z   libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5
2021-06-03T19:04:10.7948382Z   libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5
2021-06-03T19:04:10.7949468Z   libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5
2021-06-03T19:04:10.7950477Z   libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5
2021-06-03T19:04:10.7951521Z   libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5
2021-06-03T19:04:10.7952757Z   libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5
2021-06-03T19:04:10.7954016Z   libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7
2021-06-03T19:04:10.7955302Z   libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0
2021-06-03T19:04:10.7956586Z   libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0
2021-06-03T19:04:10.7957792Z   libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1
2021-06-03T19:04:10.7958933Z   libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2
2021-06-03T19:04:10.7960037Z   libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules
2021-06-03T19:04:10.7961251Z   pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4
2021-06-03T19:04:10.7962495Z   python3-cycler python3-dateutil python3-decorator python3-future
2021-06-03T19:04:10.7963831Z   python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core
2021-06-03T19:04:10.7965172Z   python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat
2021-06-03T19:04:10.7968751Z   python3-numpy python3-olefile python3-owslib python3-pil python3-plotly
2021-06-03T19:04:10.7969992Z   python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5
2021-06-03T19:04:10.7971183Z   python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg
2021-06-03T19:04:10.7972452Z   python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying
2021-06-03T19:04:10.7973756Z   python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz
2021-06-03T19:04:10.7974954Z   python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass
2021-06-03T19:04:10.7976163Z   qgis-plugin-grass-common qgis-provider-grass qgis-providers
2021-06-03T19:04:10.7977573Z   qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin
2021-06-03T19:04:10.7979032Z   qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin
2021-06-03T19:04:10.7980412Z   qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme
2021-06-03T19:04:10.7981674Z   qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser
2021-06-03T19:04:10.7983018Z   qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera
2021-06-03T19:04:10.7984157Z   usb-modeswitch usb-modeswitch-data wpasupplicant
2021-06-03T19:04:10.8205476Z 0 upgraded, 214 newly installed, 0 to remove and 36 not upgraded.
2021-06-03T19:04:10.8206652Z Need to get 183 MB of archives.
2021-06-03T19:04:10.8207361Z After this operation, 776 MB of additional disk space will be used.
2021-06-03T19:04:10.8209714Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB]
2021-06-03T19:04:10.8230225Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB]
2021-06-03T19:04:10.8416819Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB]
2021-06-03T19:04:10.8429132Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB]
2021-06-03T19:04:10.8436978Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB]
2021-06-03T19:04:10.8441800Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB]
2021-06-03T19:04:10.8449527Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB]
2021-06-03T19:04:10.8489318Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB]
2021-06-03T19:04:10.8494130Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB]
2021-06-03T19:04:10.8498664Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB]
2021-06-03T19:04:10.8503567Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB]
2021-06-03T19:04:10.8508172Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB]
2021-06-03T19:04:10.8542764Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB]
2021-06-03T19:04:10.8548233Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB]
2021-06-03T19:04:10.8552673Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB]
2021-06-03T19:04:10.8557364Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B]
2021-06-03T19:04:10.8562029Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB]
2021-06-03T19:04:10.8566921Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B]
2021-06-03T19:04:10.8572467Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B]
2021-06-03T19:04:10.8581340Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB]
2021-06-03T19:04:10.8582956Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB]
2021-06-03T19:04:10.8584546Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB]
2021-06-03T19:04:10.8586212Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB]
2021-06-03T19:04:10.8794263Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB]
2021-06-03T19:04:10.8961183Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB]
2021-06-03T19:04:10.8976957Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB]
2021-06-03T19:04:10.8991551Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4ubuntu0.1 [735 kB]
2021-06-03T19:04:10.9061684Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB]
2021-06-03T19:04:10.9067580Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB]
2021-06-03T19:04:10.9083914Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB]
2021-06-03T19:04:10.9099706Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB]
2021-06-03T19:04:10.9205940Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB]
2021-06-03T19:04:10.9304813Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB]
2021-06-03T19:04:10.9315689Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB]
2021-06-03T19:04:10.9321042Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB]
2021-06-03T19:04:10.9327489Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB]
2021-06-03T19:04:11.0328035Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB]
2021-06-03T19:04:11.0408394Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB]
2021-06-03T19:04:11.0810764Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB]
2021-06-03T19:04:11.0971717Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB]
2021-06-03T19:04:11.1093913Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB]
2021-06-03T19:04:11.1104894Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB]
2021-06-03T19:04:11.1110147Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB]
2021-06-03T19:04:11.1127246Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB]
2021-06-03T19:04:11.1137475Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB]
2021-06-03T19:04:11.1151918Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB]
2021-06-03T19:04:11.1161817Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB]
2021-06-03T19:04:11.1199039Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB]
2021-06-03T19:04:11.1207255Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB]
2021-06-03T19:04:11.1242004Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB]
2021-06-03T19:04:11.1252081Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB]
2021-06-03T19:04:11.1257106Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB]
2021-06-03T19:04:11.1263248Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB]
2021-06-03T19:04:11.1274425Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB]
2021-06-03T19:04:11.1316145Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB]
2021-06-03T19:04:11.1324356Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB]
2021-06-03T19:04:11.3465056Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB]
2021-06-03T19:04:11.3537471Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB]
2021-06-03T19:04:11.3542707Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB]
2021-06-03T19:04:11.3565252Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB]
2021-06-03T19:04:11.3573148Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB]
2021-06-03T19:04:11.3574886Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB]
2021-06-03T19:04:11.3579959Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB]
2021-06-03T19:04:11.3592506Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB]
2021-06-03T19:04:11.3600558Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB]
2021-06-03T19:04:11.3627414Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB]
2021-06-03T19:04:11.3644315Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB]
2021-06-03T19:04:11.3657078Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB]
2021-06-03T19:04:11.3750336Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB]
2021-06-03T19:04:11.3815768Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB]
2021-06-03T19:04:11.4259468Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB]
2021-06-03T19:04:11.4261295Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB]
2021-06-03T19:04:11.4267844Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB]
2021-06-03T19:04:11.4269565Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB]
2021-06-03T19:04:11.4281211Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB]
2021-06-03T19:04:11.4442052Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB]
2021-06-03T19:04:11.4525981Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB]
2021-06-03T19:04:11.6930558Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB]
2021-06-03T19:04:11.6998645Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB]
2021-06-03T19:04:11.7075619Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB]
2021-06-03T19:04:11.7569666Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB]
2021-06-03T19:04:11.7600651Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB]
2021-06-03T19:04:11.7725330Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB]
2021-06-03T19:04:11.7951371Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB]
2021-06-03T19:04:11.9092342Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB]
2021-06-03T19:04:11.9879586Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB]
2021-06-03T19:04:11.9892136Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB]
2021-06-03T19:04:11.9894341Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB]
2021-06-03T19:04:11.9902954Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB]
2021-06-03T19:04:11.9951490Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B]
2021-06-03T19:04:11.9954001Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB]
2021-06-03T19:04:11.9976660Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB]
2021-06-03T19:04:12.0086851Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB]
2021-06-03T19:04:12.0369311Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB]
2021-06-03T19:04:12.0683251Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB]
2021-06-03T19:04:12.0744110Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB]
2021-06-03T19:04:12.0943166Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB]
2021-06-03T19:04:12.0985450Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB]
2021-06-03T19:04:12.1008438Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B]
2021-06-03T19:04:12.1010084Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB]
2021-06-03T19:04:12.1024258Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB]
2021-06-03T19:04:12.1110381Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB]
2021-06-03T19:04:12.1307450Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB]
2021-06-03T19:04:12.1440310Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB]
2021-06-03T19:04:12.1528851Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB]
2021-06-03T19:04:12.1812582Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB]
2021-06-03T19:04:12.1911866Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB]
2021-06-03T19:04:13.5524995Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB]
2021-06-03T19:04:13.5615637Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB]
2021-06-03T19:04:13.5721256Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB]
2021-06-03T19:04:13.6313253Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB]
2021-06-03T19:04:13.8074387Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB]
2021-06-03T19:04:13.8079551Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB]
2021-06-03T19:04:13.8102790Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4ubuntu0.1 [620 kB]
2021-06-03T19:04:13.8197440Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB]
2021-06-03T19:04:13.8258737Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB]
2021-06-03T19:04:13.9337713Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.4 [789 kB]
2021-06-03T19:04:13.9703898Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB]
2021-06-03T19:04:13.9850299Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB]
2021-06-03T19:04:13.9857594Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB]
2021-06-03T19:04:13.9908730Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
2021-06-03T19:04:14.0018798Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB]
2021-06-03T19:04:14.0034446Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B]
2021-06-03T19:04:14.0040719Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB]
2021-06-03T19:04:14.0048250Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB]
2021-06-03T19:04:14.0072944Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB]
2021-06-03T19:04:14.0122151Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB]
2021-06-03T19:04:14.0156172Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB]
2021-06-03T19:04:14.0199797Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB]
2021-06-03T19:04:14.0282089Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB]
2021-06-03T19:04:14.0384126Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB]
2021-06-03T19:04:14.0496025Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB]
2021-06-03T19:04:14.0642304Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB]
2021-06-03T19:04:14.1323955Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB]
2021-06-03T19:04:14.1413832Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB]
2021-06-03T19:04:14.1452462Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB]
2021-06-03T19:04:14.1572586Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB]
2021-06-03T19:04:14.1838392Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB]
2021-06-03T19:04:14.1953916Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB]
2021-06-03T19:04:14.2276275Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB]
2021-06-03T19:04:14.2351575Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB]
2021-06-03T19:04:14.2492207Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB]
2021-06-03T19:04:14.2566383Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB]
2021-06-03T19:04:14.3370211Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB]
2021-06-03T19:04:14.3483118Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB]
2021-06-03T19:04:14.3559390Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB]
2021-06-03T19:04:14.3718960Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB]
2021-06-03T19:04:14.3899671Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB]
2021-06-03T19:04:14.4310797Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB]
2021-06-03T19:04:14.5222534Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB]
2021-06-03T19:04:14.5227620Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB]
2021-06-03T19:04:14.5335208Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB]
2021-06-03T19:04:14.5402857Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB]
2021-06-03T19:04:14.5518382Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB]
2021-06-03T19:04:14.5719171Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB]
2021-06-03T19:04:14.5745021Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB]
2021-06-03T19:04:14.6438607Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB]
2021-06-03T19:04:14.6662616Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB]
2021-06-03T19:04:14.7139955Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB]
2021-06-03T19:04:14.8601367Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB]
2021-06-03T19:04:14.8774273Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB]
2021-06-03T19:04:14.8943125Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB]
2021-06-03T19:04:14.8977071Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB]
2021-06-03T19:04:14.9066714Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B]
2021-06-03T19:04:14.9071687Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB]
2021-06-03T19:04:14.9099184Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B]
2021-06-03T19:04:14.9102594Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB]
2021-06-03T19:04:14.9221293Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB]
2021-06-03T19:04:14.9287675Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB]
2021-06-03T19:04:14.9943954Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB]
2021-06-03T19:04:14.9952234Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB]
2021-06-03T19:04:14.9967672Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B]
2021-06-03T19:04:14.9970796Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB]
2021-06-03T19:04:14.9986591Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB]
2021-06-03T19:04:15.0036212Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB]
2021-06-03T19:04:15.0173751Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB]
2021-06-03T19:04:15.0182135Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB]
2021-06-03T19:04:15.0239349Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB]
2021-06-03T19:04:15.0306706Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB]
2021-06-03T19:04:15.0387861Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB]
2021-06-03T19:04:15.0453446Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB]
2021-06-03T19:04:15.0469205Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB]
2021-06-03T19:04:15.0805068Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB]
2021-06-03T19:04:15.0820100Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB]
2021-06-03T19:04:15.1643750Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB]
2021-06-03T19:04:15.1660798Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB]
2021-06-03T19:04:15.1718598Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB]
2021-06-03T19:04:15.1860307Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB]
2021-06-03T19:04:15.1923569Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB]
2021-06-03T19:04:15.2016210Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.4 [363 kB]
2021-06-03T19:04:15.2116386Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B]
2021-06-03T19:04:15.2203990Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB]
2021-06-03T19:04:15.3313092Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB]
2021-06-03T19:04:15.3412468Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB]
2021-06-03T19:04:15.3510239Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB]
2021-06-03T19:04:15.4477848Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB]
2021-06-03T19:04:15.4641211Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB]
2021-06-03T19:04:15.4731166Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB]
2021-06-03T19:04:15.4805323Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB]
2021-06-03T19:04:15.4921738Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB]
2021-06-03T19:04:15.5781604Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB]
2021-06-03T19:04:15.8235029Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.10-0ubuntu1~20.04 [104 kB]
2021-06-03T19:04:15.8891176Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB]
2021-06-03T19:04:16.0309775Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB]
2021-06-03T19:04:17.5419056Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB]
2021-06-03T19:04:17.9553130Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB]
2021-06-03T19:04:17.9999260Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB]
2021-06-03T19:04:18.0327361Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB]
2021-06-03T19:04:18.0989821Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB]
2021-06-03T19:04:18.1028391Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB]
2021-06-03T19:04:18.1325885Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB]
2021-06-03T19:04:18.1638915Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB]
2021-06-03T19:04:18.1648550Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB]
2021-06-03T19:04:18.1654312Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB]
2021-06-03T19:04:19.1734164Z Fetched 183 MB in 7s (24.8 MB/s)
2021-06-03T19:04:19.2073195Z Selecting previously unselected package libdouble-conversion3:amd64.
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2021-06-03T19:04:20.0852846Z (Reading database ... 245795 files and directories currently installed.)
2021-06-03T19:04:20.0854354Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ...
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2021-06-03T19:04:51.8778287Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service.
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2021-06-03T19:04:52.8247077Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:52.8248430Z   if direction is "increasing":
2021-06-03T19:04:52.8249837Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:52.8250840Z   elif direction is "decreasing":
2021-06-03T19:04:52.8416851Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:52.8417960Z   if direction is "increasing":
2021-06-03T19:04:52.8419287Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:52.8420241Z   elif direction is "decreasing":
2021-06-03T19:04:53.7077626Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:53.7079359Z   if props["offset_coordinates"] is "data":
2021-06-03T19:04:53.7081207Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-06-03T19:04:53.7082531Z   if props["coordinates"] is not "data":
2021-06-03T19:04:54.4469852Z Setting up avahi-daemon (0.7-4ubuntu7) ...
2021-06-03T19:04:54.9410090Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service.
2021-06-03T19:04:54.9412637Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service.
2021-06-03T19:04:54.9414673Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket.
2021-06-03T19:04:56.0208994Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ...
2021-06-03T19:04:56.0223354Z First installation detected...
2021-06-03T19:04:56.0224173Z Checking NSS setup...
2021-06-03T19:04:56.0278504Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ...
2021-06-03T19:04:56.0311250Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:56.0338417Z Setting up python3-owslib (0.19.1-1) ...
2021-06-03T19:04:56.2960689Z Setting up libgdal26 (3.0.4+dfsg-1build3) ...
2021-06-03T19:04:56.2985108Z Setting up libqmi-glib5:amd64 (1.24.8-1) ...
2021-06-03T19:04:56.3012222Z Setting up libpdal-base9 (2.0.1+ds-1build3) ...
2021-06-03T19:04:56.3038347Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ...
2021-06-03T19:04:56.3057523Z Setting up libwacom-bin (1.3-2ubuntu3) ...
2021-06-03T19:04:56.3081595Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ...
2021-06-03T19:04:56.3109439Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ...
2021-06-03T19:04:56.3160079Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ...
2021-06-03T19:04:56.3189735Z Setting up python3-gdal (3.0.4+dfsg-1build3) ...
2021-06-03T19:04:56.4960536Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ...
2021-06-03T19:04:56.4981939Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ...
2021-06-03T19:04:56.5000825Z Setting up grass-core (7.8.2-1build3) ...
2021-06-03T19:04:56.8218965Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:56.8220767Z   if value is '':
2021-06-03T19:04:56.9157549Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:56.9159129Z   if do_profiling is "True" or do_profiling is "1":
2021-06-03T19:04:56.9160453Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:56.9161611Z   if do_profiling is "True" or do_profiling is "1":
2021-06-03T19:04:56.9162999Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="?
2021-06-03T19:04:56.9164218Z   if driver_string is not None and driver_string is not "":
2021-06-03T19:04:56.9582303Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:56.9584146Z   if map_i.get_type() is "raster" or map_i.get_type() is "raster3d":
2021-06-03T19:04:56.9585615Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="?
2021-06-03T19:04:56.9586937Z   if map_i.get_type() is "raster" or map_i.get_type() is "raster3d":
2021-06-03T19:04:57.0181127Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ...
2021-06-03T19:04:57.0212980Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.0297410Z Setting up libqmi-proxy (1.24.8-1) ...
2021-06-03T19:04:57.0324001Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.0370474Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.0544930Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.0569032Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.0609602Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.0639047Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:04:57.0667252Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.0689119Z Setting up gdal-bin (3.0.4+dfsg-1build3) ...
2021-06-03T19:04:57.1568117Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.1590781Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.1624838Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.1654564Z Setting up modemmanager (1.12.8-1) ...
2021-06-03T19:04:57.2874570Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service.
2021-06-03T19:04:57.2877292Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service.
2021-06-03T19:04:57.7953797Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.7982771Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8013898Z Setting up libpdal-plugins (2.0.1+ds-1build3) ...
2021-06-03T19:04:57.8043178Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8074613Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.8095319Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8134420Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ...
2021-06-03T19:04:57.8169803Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ...
2021-06-03T19:04:57.8189473Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ...
2021-06-03T19:04:57.8224754Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8255734Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8282050Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:04:57.8313574Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.8337836Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:04:57.8362674Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:04:57.8394656Z Setting up qt5-assistant (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8420464Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ...
2021-06-03T19:04:57.8454878Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:04:57.8483856Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:57.8515934Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ...
2021-06-03T19:04:58.0086744Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ...
2021-06-03T19:04:58.0107105Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:58.0144335Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:04:58.0179926Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:28.2516366Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:05:28.2538293Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ...
2021-06-03T19:05:28.2557113Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:28.2578585Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:05:28.2602839Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:28.2624221Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1132848Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ...
2021-06-03T19:05:29.1134066Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1135275Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1136240Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ...
2021-06-03T19:05:29.1137249Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1138164Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ...
2021-06-03T19:05:29.1139003Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1139924Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1140744Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1141582Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ...
2021-06-03T19:05:29.1142468Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ...
2021-06-03T19:05:29.1143518Z Processing triggers for shared-mime-info (1.15-1) ...
2021-06-03T19:05:29.2851197Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ...
2021-06-03T19:05:29.3006936Z Processing triggers for mime-support (3.64ubuntu1) ...
2021-06-03T19:05:29.3232467Z Processing triggers for hicolor-icon-theme (0.17-2) ...
2021-06-03T19:05:29.3373073Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ...
2021-06-03T19:05:29.3534808Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:05:29.3801565Z Processing triggers for systemd (245.4-4ubuntu3.6) ...
2021-06-03T19:05:29.6250081Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:05:41.1902752Z Setting up pinentry-gnome3 (1.1.0-3build1) ...
2021-06-03T19:05:41.2073194Z Setting up gnome-keyring (3.36.0-1ubuntu1) ...
2021-06-03T19:05:42.8633837Z ##[group]Run adigherman/actions/get-repo-name@master
2021-06-03T19:05:42.8634367Z with:
2021-06-03T19:05:42.8634873Z   github_slug: neuroconductor/neuroCombatData
2021-06-03T19:05:42.8635369Z env:
2021-06-03T19:05:42.8635785Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:05:42.8636219Z   TIC_DEPLOY_KEY: 
2021-06-03T19:05:42.8636989Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:05:42.8638612Z   GITHUB_PAT: ***
2021-06-03T19:05:42.8639367Z   COVERALLS_TOKEN: ***
2021-06-03T19:05:42.8639832Z   continue-on-error: true
2021-06-03T19:05:42.8640269Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:05:42.8640727Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:05:42.8641152Z   TZ: UTC
2021-06-03T19:05:42.8641506Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:05:42.8641898Z   NOT_CRAN: true
2021-06-03T19:05:42.8642252Z ##[endgroup]
2021-06-03T19:05:42.8950045Z repo slug is:  neuroconductor/neuroCombatData
2021-06-03T19:05:42.9032214Z ##[group]Run adigherman/actions/get-repo-version@master
2021-06-03T19:05:42.9032766Z env:
2021-06-03T19:05:42.9033173Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:05:42.9033623Z   TIC_DEPLOY_KEY: 
2021-06-03T19:05:42.9034390Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:05:42.9035664Z   GITHUB_PAT: ***
2021-06-03T19:05:42.9036421Z   COVERALLS_TOKEN: ***
2021-06-03T19:05:42.9036889Z   continue-on-error: true
2021-06-03T19:05:42.9037328Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:05:42.9037788Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:05:42.9038213Z   TZ: UTC
2021-06-03T19:05:42.9038570Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:05:42.9038969Z   NOT_CRAN: true
2021-06-03T19:05:42.9039313Z ##[endgroup]
2021-06-03T19:05:43.0860642Z ##[group]Run adigherman/actions/get-release-asset@master
2021-06-03T19:05:43.0861303Z with:
2021-06-03T19:05:43.0861718Z   repo_name: neuroCombatData
2021-06-03T19:05:43.0862153Z   repo_version: 0.99.0
2021-06-03T19:05:43.0862530Z   runner_os: Linux
2021-06-03T19:05:43.0862888Z   R_version: 4.1
2021-06-03T19:05:43.0863204Z env:
2021-06-03T19:05:43.0863615Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:05:43.0864053Z   TIC_DEPLOY_KEY: 
2021-06-03T19:05:43.0864823Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:05:43.0866454Z   GITHUB_PAT: ***
2021-06-03T19:05:43.0867223Z   COVERALLS_TOKEN: ***
2021-06-03T19:05:43.0867695Z   continue-on-error: true
2021-06-03T19:05:43.0868148Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:05:43.0868599Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:05:43.0869027Z   TZ: UTC
2021-06-03T19:05:43.0869386Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:05:43.0869783Z   NOT_CRAN: true
2021-06-03T19:05:43.0870155Z ##[endgroup]
2021-06-03T19:05:43.1203634Z Package:  neuroCombatData
2021-06-03T19:05:43.1207721Z Version:  0.99.0
2021-06-03T19:05:43.1208168Z OS:  Linux
2021-06-03T19:05:43.1330108Z ##[group]Run install.packages('remotes')
2021-06-03T19:05:43.1330874Z install.packages('remotes')
2021-06-03T19:05:43.1331634Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
2021-06-03T19:05:43.1332591Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
2021-06-03T19:05:43.1339637Z shell: /usr/local/bin/Rscript {0}
2021-06-03T19:05:43.1340062Z env:
2021-06-03T19:05:43.1340517Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:05:43.1340982Z   TIC_DEPLOY_KEY: 
2021-06-03T19:05:43.1341768Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:05:43.1343089Z   GITHUB_PAT: ***
2021-06-03T19:05:43.1343853Z   COVERALLS_TOKEN: ***
2021-06-03T19:05:43.1344326Z   continue-on-error: true
2021-06-03T19:05:43.1344768Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:05:43.1345238Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:05:43.1345688Z   TZ: UTC
2021-06-03T19:05:43.1346046Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:05:43.1346440Z   NOT_CRAN: true
2021-06-03T19:05:43.1346806Z ##[endgroup]
2021-06-03T19:05:43.2943845Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:05:43.2945494Z (as ‘lib’ is unspecified)
2021-06-03T19:05:57.9642254Z trying URL 'https://cloud.r-project.org/src/contrib/remotes_2.4.0.tar.gz'
2021-06-03T19:05:58.0078115Z Content type 'application/x-gzip' length 149836 bytes (146 KB)
2021-06-03T19:05:58.0294729Z ==================================================
2021-06-03T19:05:58.0295334Z downloaded 146 KB
2021-06-03T19:05:58.0295648Z 
2021-06-03T19:05:58.3115545Z * installing *source* package ‘remotes’ ...
2021-06-03T19:05:58.3155689Z ** package ‘remotes’ successfully unpacked and MD5 sums checked
2021-06-03T19:05:58.3156938Z ** using staged installation
2021-06-03T19:05:58.3316825Z ** R
2021-06-03T19:05:58.3504181Z ** inst
2021-06-03T19:05:58.3514747Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:00.1049633Z ** help
2021-06-03T19:06:00.1897881Z *** installing help indices
2021-06-03T19:06:00.2463171Z ** building package indices
2021-06-03T19:06:00.4691151Z ** installing vignettes
2021-06-03T19:06:00.4756025Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:00.6450521Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:00.8461961Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:00.8485166Z * DONE (remotes)
2021-06-03T19:06:00.8549817Z 
2021-06-03T19:06:00.8550702Z The downloaded source packages are in
2021-06-03T19:06:00.8552203Z 	‘/tmp/RtmpvZyBHO/downloaded_packages’
2021-06-03T19:06:17.6749361Z ##[group]Run actions/cache@v1
2021-06-03T19:06:17.6749779Z with:
2021-06-03T19:06:17.6750197Z   path: /home/runner/work/_temp/Library
2021-06-03T19:06:17.6753123Z   key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-3cd45166172594b2b73ffce2864bbac8a71faa794bc5f30669ef0fc53f365aac
2021-06-03T19:06:17.6757029Z   restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-
2021-06-03T19:06:17.6758260Z env:
2021-06-03T19:06:17.6758667Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:06:17.6759120Z   TIC_DEPLOY_KEY: 
2021-06-03T19:06:17.6759879Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:06:17.6761559Z   GITHUB_PAT: ***
2021-06-03T19:06:17.6762339Z   COVERALLS_TOKEN: ***
2021-06-03T19:06:17.6762808Z   continue-on-error: true
2021-06-03T19:06:17.6763246Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:06:17.6763711Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:06:17.6764186Z   TZ: UTC
2021-06-03T19:06:17.6764548Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:06:17.6764945Z   NOT_CRAN: true
2021-06-03T19:06:17.6765302Z ##[endgroup]
2021-06-03T19:06:17.7175265Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time.
2021-06-03T19:06:17.7231738Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')"
2021-06-03T19:06:17.7232512Z Rscript -e "remotes::install_github('r-hub/sysreqs')"
2021-06-03T19:06:17.7233225Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
2021-06-03T19:06:17.7233820Z sudo -s eval "$sysreqs"
2021-06-03T19:06:17.7274373Z shell: /usr/bin/bash -e {0}
2021-06-03T19:06:17.7274740Z env:
2021-06-03T19:06:17.7275163Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:06:17.7275606Z   TIC_DEPLOY_KEY: 
2021-06-03T19:06:17.7276379Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:06:17.7277703Z   GITHUB_PAT: ***
2021-06-03T19:06:17.7278460Z   COVERALLS_TOKEN: ***
2021-06-03T19:06:17.7278930Z   continue-on-error: true
2021-06-03T19:06:17.7279390Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:06:17.7279839Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:06:17.7280284Z   TZ: UTC
2021-06-03T19:06:17.7280666Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:06:17.7281063Z   NOT_CRAN: true
2021-06-03T19:06:17.7281500Z   RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
2021-06-03T19:06:17.7281956Z ##[endgroup]
2021-06-03T19:06:17.9061313Z Using github PAT from envvar GITHUB_PAT
2021-06-03T19:06:18.2936658Z Downloading GitHub repo r-hub/sysreqs@HEAD
2021-06-03T19:06:33.0575118Z rprojroot (NA -> 2.0.2) [CRAN]
2021-06-03T19:06:33.0578329Z crayon    (NA -> 1.4.1) [CRAN]
2021-06-03T19:06:33.0579318Z R6        (NA -> 2.5.0) [CRAN]
2021-06-03T19:06:33.0580225Z desc      (NA -> 1.3.0) [CRAN]
2021-06-03T19:06:33.0581128Z debugme   (NA -> 1.1.0) [CRAN]
2021-06-03T19:06:33.0598025Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme
2021-06-03T19:06:33.0608371Z Installing packages into ‘/home/runner/work/_temp/Library’
2021-06-03T19:06:33.0609124Z (as ‘lib’ is unspecified)
2021-06-03T19:06:46.3633237Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz'
2021-06-03T19:06:46.6330435Z Content type 'binary/octet-stream' length 61445 bytes (60 KB)
2021-06-03T19:06:46.6383490Z ==================================================
2021-06-03T19:06:46.6384356Z downloaded 60 KB
2021-06-03T19:06:46.6384880Z 
2021-06-03T19:06:46.6415032Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz'
2021-06-03T19:06:46.9092847Z Content type 'binary/octet-stream' length 35834 bytes (34 KB)
2021-06-03T19:06:46.9102041Z ==================================================
2021-06-03T19:06:46.9102515Z downloaded 34 KB
2021-06-03T19:06:46.9102787Z 
2021-06-03T19:06:46.9135417Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz'
2021-06-03T19:06:47.0879234Z Content type 'binary/octet-stream' length 64110 bytes (62 KB)
2021-06-03T19:06:47.0933714Z ==================================================
2021-06-03T19:06:47.0934459Z downloaded 62 KB
2021-06-03T19:06:47.0935214Z 
2021-06-03T19:06:47.0971677Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz'
2021-06-03T19:06:47.2959942Z Content type 'binary/octet-stream' length 292756 bytes (285 KB)
2021-06-03T19:06:47.3129173Z ==================================================
2021-06-03T19:06:47.3129965Z downloaded 285 KB
2021-06-03T19:06:47.3130470Z 
2021-06-03T19:06:47.3165960Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz'
2021-06-03T19:06:48.6100512Z Content type 'application/x-tar' length 997019 bytes (973 KB)
2021-06-03T19:06:48.6450418Z ==================================================
2021-06-03T19:06:48.6451383Z downloaded 973 KB
2021-06-03T19:06:48.6451859Z 
2021-06-03T19:06:48.8803452Z * installing *source* package ‘rprojroot’ ...
2021-06-03T19:06:48.8825516Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked
2021-06-03T19:06:48.8826621Z ** using staged installation
2021-06-03T19:06:48.8952348Z ** R
2021-06-03T19:06:48.8995950Z ** inst
2021-06-03T19:06:48.9004571Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:49.3479317Z ** help
2021-06-03T19:06:49.3727339Z *** installing help indices
2021-06-03T19:06:49.3981314Z *** copying figures
2021-06-03T19:06:49.3986513Z ** building package indices
2021-06-03T19:06:49.5833562Z ** installing vignettes
2021-06-03T19:06:49.5886341Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:49.7564396Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:49.9282419Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:49.9291509Z * DONE (rprojroot)
2021-06-03T19:06:50.1599415Z * installing *source* package ‘crayon’ ...
2021-06-03T19:06:50.1620570Z ** package ‘crayon’ successfully unpacked and MD5 sums checked
2021-06-03T19:06:50.1622985Z ** using staged installation
2021-06-03T19:06:50.1747408Z ** R
2021-06-03T19:06:50.1832280Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:50.9644819Z ** help
2021-06-03T19:06:51.0154807Z *** installing help indices
2021-06-03T19:06:51.0518313Z ** building package indices
2021-06-03T19:06:51.2610602Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:51.4260862Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:51.6001984Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:51.6011417Z * DONE (crayon)
2021-06-03T19:06:51.8148247Z * installing *source* package ‘R6’ ...
2021-06-03T19:06:51.8162461Z ** package ‘R6’ successfully unpacked and MD5 sums checked
2021-06-03T19:06:51.8163535Z ** using staged installation
2021-06-03T19:06:51.8279263Z ** R
2021-06-03T19:06:51.8341937Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:52.2862112Z ** help
2021-06-03T19:06:52.3055866Z *** installing help indices
2021-06-03T19:06:52.3241007Z *** copying figures
2021-06-03T19:06:52.3244043Z ** building package indices
2021-06-03T19:06:52.5068755Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:52.6745203Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:52.8441872Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:52.8449833Z * DONE (R6)
2021-06-03T19:06:53.1341863Z * installing *source* package ‘desc’ ...
2021-06-03T19:06:53.1389571Z ** package ‘desc’ successfully unpacked and MD5 sums checked
2021-06-03T19:06:53.1390766Z ** using staged installation
2021-06-03T19:06:53.1535908Z ** R
2021-06-03T19:06:53.1659666Z ** inst
2021-06-03T19:06:53.1673839Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:54.6183905Z ** help
2021-06-03T19:06:54.7404642Z *** installing help indices
2021-06-03T19:06:54.8267448Z ** building package indices
2021-06-03T19:06:55.0787814Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:55.2541070Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:55.4534018Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:55.4566039Z * DONE (desc)
2021-06-03T19:06:55.6902310Z * installing *source* package ‘debugme’ ...
2021-06-03T19:06:55.6932543Z ** package ‘debugme’ successfully unpacked and MD5 sums checked
2021-06-03T19:06:55.6933759Z ** using staged installation
2021-06-03T19:06:55.7033875Z ** R
2021-06-03T19:06:55.7062264Z ** inst
2021-06-03T19:06:55.7081116Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:55.9966541Z ** help
2021-06-03T19:06:56.0083974Z *** installing help indices
2021-06-03T19:06:56.0284053Z ** building package indices
2021-06-03T19:06:56.2076124Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:56.3774304Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:56.5465283Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:56.5470428Z * DONE (debugme)
2021-06-03T19:06:56.5526195Z 
2021-06-03T19:06:56.5526863Z The downloaded source packages are in
2021-06-03T19:06:56.5528089Z 	‘/tmp/RtmpMRVuX4/downloaded_packages’
2021-06-03T19:06:56.5540196Z Running `R CMD build`...
2021-06-03T19:06:56.7686341Z * checking for file ‘/tmp/RtmpMRVuX4/remotes656717da4c6/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK
2021-06-03T19:06:56.7687781Z * preparing ‘sysreqs’:
2021-06-03T19:06:56.7688879Z * checking DESCRIPTION meta-information ... OK
2021-06-03T19:06:56.7690107Z * checking for LF line-endings in source and make files and shell scripts
2021-06-03T19:06:56.7691078Z * checking for empty or unneeded directories
2021-06-03T19:06:56.7692047Z Omitted ‘LazyData’ from DESCRIPTION
2021-06-03T19:06:56.7692960Z * building ‘sysreqs_1.0.0.9000.tar.gz’
2021-06-03T19:06:56.7694069Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:06:56.7695007Z (as ‘lib’ is unspecified)
2021-06-03T19:06:56.9642172Z * installing *source* package ‘sysreqs’ ...
2021-06-03T19:06:56.9644176Z ** using staged installation
2021-06-03T19:06:56.9764566Z ** R
2021-06-03T19:06:56.9795466Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:06:57.3112079Z ** help
2021-06-03T19:06:57.3307392Z *** installing help indices
2021-06-03T19:06:57.3463892Z ** building package indices
2021-06-03T19:06:57.5247133Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:06:57.7039824Z ** testing if installed package can be loaded from final location
2021-06-03T19:06:57.8859480Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:06:57.8865320Z * DONE (sysreqs)
2021-06-03T19:07:13.4810740Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease
2021-06-03T19:07:13.4812978Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease
2021-06-03T19:07:13.4814658Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease
2021-06-03T19:07:13.5068465Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease
2021-06-03T19:07:13.5255537Z Hit:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease
2021-06-03T19:07:13.6305844Z Hit:6 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease
2021-06-03T19:07:13.7882410Z Hit:7 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease
2021-06-03T19:07:14.9003090Z Reading package lists...
2021-06-03T19:07:14.9702133Z Reading package lists...
2021-06-03T19:07:15.1128243Z Building dependency tree...
2021-06-03T19:07:15.1149279Z Reading state information...
2021-06-03T19:07:15.2569234Z libicu-dev is already the newest version (66.1-2ubuntu2).
2021-06-03T19:07:15.2570261Z libicu-dev set to manually installed.
2021-06-03T19:07:15.2571292Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.4).
2021-06-03T19:07:15.2572254Z pandoc is already the newest version (2.7.3-1).
2021-06-03T19:07:15.2574397Z The following additional packages will be installed:
2021-06-03T19:07:15.2575872Z   libbibutils6 libghc-pandoc-citeproc-data
2021-06-03T19:07:15.2576696Z Suggested packages:
2021-06-03T19:07:15.2577648Z   libcurl4-doc libidn11-dev libldap2-dev librtmp-dev
2021-06-03T19:07:15.3041222Z The following NEW packages will be installed:
2021-06-03T19:07:15.3046619Z   libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data
2021-06-03T19:07:15.3047954Z   pandoc-citeproc
2021-06-03T19:07:15.3268952Z 0 upgraded, 4 newly installed, 0 to remove and 36 not upgraded.
2021-06-03T19:07:15.3269723Z Need to get 13.7 MB of archives.
2021-06-03T19:07:15.3270470Z After this operation, 109 MB of additional disk space will be used.
2021-06-03T19:07:15.3272171Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB]
2021-06-03T19:07:15.4150269Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB]
2021-06-03T19:07:15.4248588Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB]
2021-06-03T19:07:15.4357179Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB]
2021-06-03T19:07:16.3626895Z Fetched 13.7 MB in 1s (21.3 MB/s)
2021-06-03T19:07:16.3936493Z Selecting previously unselected package libbibutils6.
2021-06-03T19:07:16.4019123Z (Reading database ... 
2021-06-03T19:07:16.4019766Z (Reading database ... 5%
2021-06-03T19:07:16.4020332Z (Reading database ... 10%
2021-06-03T19:07:16.4020879Z (Reading database ... 15%
2021-06-03T19:07:16.4021433Z (Reading database ... 20%
2021-06-03T19:07:16.4021988Z (Reading database ... 25%
2021-06-03T19:07:16.4022523Z (Reading database ... 30%
2021-06-03T19:07:16.4023075Z (Reading database ... 35%
2021-06-03T19:07:16.4023627Z (Reading database ... 40%
2021-06-03T19:07:16.4024159Z (Reading database ... 45%
2021-06-03T19:07:16.4026374Z (Reading database ... 50%
2021-06-03T19:07:16.4113430Z (Reading database ... 55%
2021-06-03T19:07:16.4152091Z (Reading database ... 60%
2021-06-03T19:07:16.4222609Z (Reading database ... 65%
2021-06-03T19:07:16.4251770Z (Reading database ... 70%
2021-06-03T19:07:16.4287562Z (Reading database ... 75%
2021-06-03T19:07:16.4580594Z (Reading database ... 80%
2021-06-03T19:07:16.4638876Z (Reading database ... 85%
2021-06-03T19:07:16.4747235Z (Reading database ... 90%
2021-06-03T19:07:16.5077181Z (Reading database ... 95%
2021-06-03T19:07:16.5077840Z (Reading database ... 100%
2021-06-03T19:07:16.5078681Z (Reading database ... 261006 files and directories currently installed.)
2021-06-03T19:07:16.5180459Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ...
2021-06-03T19:07:16.5197180Z Unpacking libbibutils6 (6.2-1) ...
2021-06-03T19:07:16.5927636Z Selecting previously unselected package libcurl4-openssl-dev:amd64.
2021-06-03T19:07:16.6098075Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ...
2021-06-03T19:07:16.6106950Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ...
2021-06-03T19:07:16.6687486Z Selecting previously unselected package libghc-pandoc-citeproc-data.
2021-06-03T19:07:16.6880114Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ...
2021-06-03T19:07:16.6887333Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
2021-06-03T19:07:16.7181234Z Selecting previously unselected package pandoc-citeproc.
2021-06-03T19:07:16.7398322Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ...
2021-06-03T19:07:16.7404269Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ...
2021-06-03T19:07:16.7431306Z Replaced by files in installed package pandoc (2.7.3-1) ...
2021-06-03T19:07:18.0501079Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ...
2021-06-03T19:07:18.0524651Z Setting up libbibutils6 (6.2-1) ...
2021-06-03T19:07:18.0545110Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ...
2021-06-03T19:07:18.0563077Z Setting up pandoc-citeproc (0.15.0.1-1build4) ...
2021-06-03T19:07:18.0586710Z Processing triggers for man-db (2.9.1-1) ...
2021-06-03T19:07:21.0457453Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ...
2021-06-03T19:07:22.6712111Z ##[group]Run remotes::install_github("ropensci/tic")
2021-06-03T19:07:22.6712782Z remotes::install_github("ropensci/tic")
2021-06-03T19:07:22.6713416Z remotes::install_github("muschellij2/ghtravis")
2021-06-03T19:07:22.6714073Z remotes::install_github("muschellij2/aghast")
2021-06-03T19:07:22.6714653Z remotes::install_cran("covr")
2021-06-03T19:07:22.6721250Z shell: /usr/local/bin/Rscript {0}
2021-06-03T19:07:22.6721658Z env:
2021-06-03T19:07:22.6722364Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:07:22.6722815Z   TIC_DEPLOY_KEY: 
2021-06-03T19:07:22.6723598Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:07:22.6725134Z   GITHUB_PAT: ***
2021-06-03T19:07:22.6726457Z   COVERALLS_TOKEN: ***
2021-06-03T19:07:22.6726963Z   continue-on-error: true
2021-06-03T19:07:22.6727433Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:07:22.6727883Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:07:22.6728338Z   TZ: UTC
2021-06-03T19:07:22.6728711Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:07:22.6729100Z   NOT_CRAN: true
2021-06-03T19:07:22.6729461Z ##[endgroup]
2021-06-03T19:07:22.8588719Z Using github PAT from envvar GITHUB_PAT
2021-06-03T19:07:23.3174047Z Downloading GitHub repo ropensci/tic@HEAD
2021-06-03T19:07:38.4275245Z rlang       (NA -> 0.4.11) [CRAN]
2021-06-03T19:07:38.4276712Z magrittr    (NA -> 2.0.1 ) [CRAN]
2021-06-03T19:07:38.4277712Z glue        (NA -> 1.4.2 ) [CRAN]
2021-06-03T19:07:38.4278641Z sys         (NA -> 3.4   ) [CRAN]
2021-06-03T19:07:38.4279536Z askpass     (NA -> 1.1   ) [CRAN]
2021-06-03T19:07:38.4280464Z openssl     (NA -> 1.4.4 ) [CRAN]
2021-06-03T19:07:38.4281376Z mime        (NA -> 0.10  ) [CRAN]
2021-06-03T19:07:38.4282255Z curl        (NA -> 4.3.1 ) [CRAN]
2021-06-03T19:07:38.4283165Z jsonlite    (NA -> 1.7.2 ) [CRAN]
2021-06-03T19:07:38.4284102Z ini         (NA -> 0.3.1 ) [CRAN]
2021-06-03T19:07:38.4284978Z httr        (NA -> 1.4.2 ) [CRAN]
2021-06-03T19:07:38.4286080Z gitcreds    (NA -> 0.1.1 ) [CRAN]
2021-06-03T19:07:38.4287006Z cli         (NA -> 2.5.0 ) [CRAN]
2021-06-03T19:07:38.4287873Z zip         (NA -> 2.2.0 ) [CRAN]
2021-06-03T19:07:38.4288790Z rstudioapi  (NA -> 0.13  ) [CRAN]
2021-06-03T19:07:38.4290748Z credentials (NA -> 1.3.0 ) [CRAN]
2021-06-03T19:07:38.4291682Z fastmap     (NA -> 1.1.0 ) [CRAN]
2021-06-03T19:07:38.4292511Z yaml        (NA -> 2.2.1 ) [CRAN]
2021-06-03T19:07:38.4293315Z withr       (NA -> 2.4.2 ) [CRAN]
2021-06-03T19:07:38.4294121Z whisker     (NA -> 0.4   ) [CRAN]
2021-06-03T19:07:38.4294958Z rappdirs    (NA -> 0.3.3 ) [CRAN]
2021-06-03T19:07:38.4295786Z purrr       (NA -> 0.3.4 ) [CRAN]
2021-06-03T19:07:38.4296645Z lifecycle   (NA -> 1.0.0 ) [CRAN]
2021-06-03T19:07:38.4297366Z gh          (NA -> 1.3.0 ) [CRAN]
2021-06-03T19:07:38.4298059Z gert        (NA -> 1.3.0 ) [CRAN]
2021-06-03T19:07:38.4300365Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r
2021-06-03T19:07:38.4301775Z fs          (NA -> 1.5.0 ) [CRAN]
2021-06-03T19:07:38.4302676Z clipr       (NA -> 0.7.1 ) [CRAN]
2021-06-03T19:07:38.4303383Z cachem      (NA -> 1.0.5 ) [CRAN]
2021-06-03T19:07:38.4304136Z usethis     (NA -> 2.0.1 ) [CRAN]
2021-06-03T19:07:38.4304863Z memoise     (NA -> 2.0.0 ) [CRAN]
2021-06-03T19:07:38.4305560Z git2r       (NA -> 0.28.0) [CRAN]
2021-06-03T19:07:38.4308921Z Installing packages into ‘/home/runner/work/_temp/Library’
2021-06-03T19:07:38.4309810Z (as ‘lib’ is unspecified)
2021-06-03T19:07:52.2141699Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz'
2021-06-03T19:07:52.4922880Z Content type 'binary/octet-stream' length 859995 bytes (839 KB)
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2021-06-03T19:07:52.6194588Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz'
2021-06-03T19:07:52.8847385Z Content type 'binary/octet-stream' length 264532 bytes (258 KB)
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2021-06-03T19:07:52.9052029Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz'
2021-06-03T19:07:53.1941726Z Content type 'binary/octet-stream' length 100043 bytes (97 KB)
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2021-06-03T19:07:53.2081839Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz'
2021-06-03T19:07:53.5960949Z Content type 'binary/octet-stream' length 20291 bytes (19 KB)
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2021-06-03T19:07:53.6001945Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz'
2021-06-03T19:07:53.7873211Z Content type 'application/x-tar' length 5688 bytes
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2021-06-03T19:07:53.7909929Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz'
2021-06-03T19:07:54.0571753Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB)
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2021-06-03T19:07:54.1037826Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz'
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2021-06-03T19:07:54.3838031Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz'
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2021-06-03T19:07:54.5759055Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz'
2021-06-03T19:07:54.7457858Z Content type 'binary/octet-stream' length 422264 bytes (412 KB)
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2021-06-03T19:07:54.7688307Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz'
2021-06-03T19:07:55.0350476Z Content type 'application/x-tar' length 3475 bytes
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2021-06-03T19:07:55.0391165Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz'
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2021-06-03T19:07:55.3292842Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz'
2021-06-03T19:07:55.6060469Z Content type 'binary/octet-stream' length 62129 bytes (60 KB)
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2021-06-03T19:07:55.6161255Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz'
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2021-06-03T19:07:56.0265202Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.2.0.tar.gz'
2021-06-03T19:07:56.4139751Z Content type 'binary/octet-stream' length 114668 bytes (111 KB)
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2021-06-03T19:07:56.4282956Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz'
2021-06-03T19:07:56.7120443Z Content type 'binary/octet-stream' length 109870 bytes (107 KB)
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2021-06-03T19:07:56.7276115Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz'
2021-06-03T19:07:57.0024676Z Content type 'binary/octet-stream' length 230676 bytes (225 KB)
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2021-06-03T19:07:57.0279048Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz'
2021-06-03T19:07:57.3000636Z Content type 'binary/octet-stream' length 44517 bytes (43 KB)
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2021-06-03T19:07:57.3090579Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz'
2021-06-03T19:07:57.5795563Z Content type 'binary/octet-stream' length 92979 bytes (90 KB)
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2021-06-03T19:07:57.5918235Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz'
2021-06-03T19:07:57.7685066Z Content type 'binary/octet-stream' length 95150 bytes (92 KB)
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2021-06-03T19:07:57.7795170Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz'
2021-06-03T19:07:58.0470897Z Content type 'application/x-tar' length 28675 bytes (28 KB)
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2021-06-03T19:07:58.0504215Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz'
2021-06-03T19:07:58.3344249Z Content type 'binary/octet-stream' length 12326 bytes (12 KB)
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2021-06-03T19:07:58.7298719Z Content type 'binary/octet-stream' length 373001 bytes (364 KB)
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2021-06-03T19:07:58.7519707Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz'
2021-06-03T19:07:59.0054471Z Content type 'binary/octet-stream' length 83493 bytes (81 KB)
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2021-06-03T19:07:59.0145800Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz'
2021-06-03T19:07:59.1893292Z Content type 'binary/octet-stream' length 45853 bytes (44 KB)
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2021-06-03T19:07:59.1978758Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz'
2021-06-03T19:07:59.3805741Z Content type 'binary/octet-stream' length 66528 bytes (64 KB)
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2021-06-03T19:07:59.3896483Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz'
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2021-06-03T19:08:00.7088091Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz'
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2021-06-03T19:08:01.0751130Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz'
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2021-06-03T19:08:01.4794197Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz'
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2021-06-03T19:08:01.7596623Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz'
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2021-06-03T19:08:02.3965924Z 
2021-06-03T19:08:02.8819769Z * installing *source* package ‘rlang’ ...
2021-06-03T19:08:02.8957907Z ** package ‘rlang’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:02.8959192Z ** using staged installation
2021-06-03T19:08:02.9107283Z ** libs
2021-06-03T19:08:02.9176887Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c capture.c -o capture.o
2021-06-03T19:08:03.0196597Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c export.c -o export.o
2021-06-03T19:08:03.3243493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c internal.c -o internal.o
2021-06-03T19:08:05.4163099Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c lib.c -o lib.o
2021-06-03T19:08:06.3384778Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c version.c -o version.o
2021-06-03T19:08:06.3746469Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:06.4247553Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs
2021-06-03T19:08:06.4258278Z ** R
2021-06-03T19:08:06.4701609Z ** inst
2021-06-03T19:08:06.4709597Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:09.5119841Z ** help
2021-06-03T19:08:10.1549570Z *** installing help indices
2021-06-03T19:08:10.4301438Z *** copying figures
2021-06-03T19:08:10.4307188Z ** building package indices
2021-06-03T19:08:10.8776454Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:11.0657531Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:11.0870661Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:11.3355114Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:11.3385666Z * DONE (rlang)
2021-06-03T19:08:11.5815652Z * installing *source* package ‘magrittr’ ...
2021-06-03T19:08:11.5840459Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:11.5841575Z ** using staged installation
2021-06-03T19:08:11.5961710Z ** libs
2021-06-03T19:08:11.6008009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pipe.c -o pipe.o
2021-06-03T19:08:11.7184073Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:08:11.7698115Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:11.7928081Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs
2021-06-03T19:08:11.7929225Z ** R
2021-06-03T19:08:11.7960418Z ** inst
2021-06-03T19:08:11.7973679Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:12.0619843Z ** help
2021-06-03T19:08:12.1002260Z *** installing help indices
2021-06-03T19:08:12.1285427Z *** copying figures
2021-06-03T19:08:12.1288257Z ** building package indices
2021-06-03T19:08:12.3246599Z ** installing vignettes
2021-06-03T19:08:12.3280857Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:12.4957837Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:12.5127488Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:12.6792107Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:12.6793312Z * DONE (magrittr)
2021-06-03T19:08:12.9073767Z * installing *source* package ‘glue’ ...
2021-06-03T19:08:12.9092603Z ** package ‘glue’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:12.9093794Z ** using staged installation
2021-06-03T19:08:12.9235260Z ** libs
2021-06-03T19:08:12.9281132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c glue.c -o glue.o
2021-06-03T19:08:13.0398154Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:13.0819334Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c trim.c -o trim.o
2021-06-03T19:08:13.1606602Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:13.1818643Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs
2021-06-03T19:08:13.1829991Z ** R
2021-06-03T19:08:13.1878793Z ** inst
2021-06-03T19:08:13.1890252Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:13.6287074Z ** help
2021-06-03T19:08:13.6568334Z *** installing help indices
2021-06-03T19:08:13.6842536Z *** copying figures
2021-06-03T19:08:13.6844781Z ** building package indices
2021-06-03T19:08:13.8704278Z ** installing vignettes
2021-06-03T19:08:13.8762815Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:14.0836388Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:14.1007404Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:14.3072140Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:14.3080025Z * DONE (glue)
2021-06-03T19:08:14.5127217Z * installing *source* package ‘sys’ ...
2021-06-03T19:08:14.5139003Z ** package ‘sys’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:14.5140072Z ** using staged installation
2021-06-03T19:08:14.5316908Z ** libs
2021-06-03T19:08:14.5362585Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c exec.c -o exec.o
2021-06-03T19:08:14.7200179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:14.7631428Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:14.7846878Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs
2021-06-03T19:08:14.7858037Z ** R
2021-06-03T19:08:14.7891494Z ** inst
2021-06-03T19:08:14.7899393Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:15.0491293Z ** help
2021-06-03T19:08:15.0683233Z *** installing help indices
2021-06-03T19:08:15.0865009Z ** building package indices
2021-06-03T19:08:15.2712613Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:15.4393689Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:15.4563564Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:15.6220980Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:15.6226913Z * DONE (sys)
2021-06-03T19:08:15.8147213Z * installing *source* package ‘mime’ ...
2021-06-03T19:08:15.8155241Z ** package ‘mime’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:15.8156306Z ** using staged installation
2021-06-03T19:08:15.8281045Z ** libs
2021-06-03T19:08:15.8330193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:15.8768218Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rawmatch.c -o rawmatch.o
2021-06-03T19:08:15.9306581Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:15.9451439Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs
2021-06-03T19:08:15.9463783Z ** R
2021-06-03T19:08:15.9517491Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:16.2547530Z ** help
2021-06-03T19:08:16.2740888Z *** installing help indices
2021-06-03T19:08:16.2886548Z ** building package indices
2021-06-03T19:08:16.4670740Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:16.6325028Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:16.6495483Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:16.8157150Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:16.8163367Z * DONE (mime)
2021-06-03T19:08:17.1438539Z * installing *source* package ‘curl’ ...
2021-06-03T19:08:17.1513718Z ** package ‘curl’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:17.1514912Z ** using staged installation
2021-06-03T19:08:17.1603709Z Found pkg-config cflags and libs!
2021-06-03T19:08:17.2402305Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu
2021-06-03T19:08:17.2403094Z Using PKG_LIBS=-lcurl
2021-06-03T19:08:17.2893780Z ** libs
2021-06-03T19:08:17.2945210Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o
2021-06-03T19:08:17.2967946Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c callbacks.c -o callbacks.o
2021-06-03T19:08:17.3682233Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c curl.c -o curl.o
2021-06-03T19:08:17.4863853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c download.c -o download.o
2021-06-03T19:08:17.5689411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c escape.c -o escape.o
2021-06-03T19:08:17.6231568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c fetch.c -o fetch.o
2021-06-03T19:08:17.7198785Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c form.c -o form.o
2021-06-03T19:08:17.7860964Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c getdate.c -o getdate.o
2021-06-03T19:08:17.8382255Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c handle.c -o handle.o
2021-06-03T19:08:18.1504936Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c ieproxy.c -o ieproxy.o
2021-06-03T19:08:18.1871004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:18.2407526Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c interrupt.c -o interrupt.o
2021-06-03T19:08:18.3036641Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c multi.c -o multi.o
2021-06-03T19:08:18.4681960Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c nslookup.c -o nslookup.o
2021-06-03T19:08:18.5196484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c reflist.c -o reflist.o
2021-06-03T19:08:18.5728459Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c split.c -o split.o
2021-06-03T19:08:18.6146466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c ssl.c -o ssl.o
2021-06-03T19:08:18.6590524Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c typechecking.c -o typechecking.o
2021-06-03T19:08:18.7126549Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:08:18.8286534Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c version.c -o version.o
2021-06-03T19:08:18.8939687Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c winidn.c -o winidn.o
2021-06-03T19:08:18.9129798Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c writer.c -o writer.o
2021-06-03T19:08:18.9622335Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:18.9924970Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs
2021-06-03T19:08:18.9938982Z ** R
2021-06-03T19:08:19.0051774Z ** inst
2021-06-03T19:08:19.0086015Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:19.4854554Z ** help
2021-06-03T19:08:19.5293882Z *** installing help indices
2021-06-03T19:08:19.5613224Z ** building package indices
2021-06-03T19:08:19.7604880Z ** installing vignettes
2021-06-03T19:08:19.7702860Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:19.9463076Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:19.9638253Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:20.1453255Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:20.1462557Z * DONE (curl)
2021-06-03T19:08:20.4518951Z * installing *source* package ‘jsonlite’ ...
2021-06-03T19:08:20.4570995Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:20.4572227Z ** using staged installation
2021-06-03T19:08:20.4700991Z ** libs
2021-06-03T19:08:20.4752648Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c base64.c -o base64.o
2021-06-03T19:08:20.5391321Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c collapse_array.c -o collapse_array.o
2021-06-03T19:08:20.5936762Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c collapse_object.c -o collapse_object.o
2021-06-03T19:08:20.6550254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c collapse_pretty.c -o collapse_pretty.o
2021-06-03T19:08:20.7593269Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c escape_chars.c -o escape_chars.o
2021-06-03T19:08:20.8247959Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c integer64_to_na.c -o integer64_to_na.o
2021-06-03T19:08:20.8705744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c is_datelist.c -o is_datelist.o
2021-06-03T19:08:20.9152415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c is_recordlist.c -o is_recordlist.o
2021-06-03T19:08:20.9662280Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c is_scalarlist.c -o is_scalarlist.o
2021-06-03T19:08:21.0140870Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c modp_numtoa.c -o modp_numtoa.o
2021-06-03T19:08:21.1366080Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c null_to_na.c -o null_to_na.o
2021-06-03T19:08:21.2005380Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c num_to_char.c -o num_to_char.o
2021-06-03T19:08:21.2783404Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c parse.c -o parse.o
2021-06-03T19:08:21.3442431Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c prettify.c -o prettify.o
2021-06-03T19:08:21.4076606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c push_parser.c -o push_parser.o
2021-06-03T19:08:21.4608612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c r-base64.c -o r-base64.o
2021-06-03T19:08:21.5117355Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c register.c -o register.o
2021-06-03T19:08:21.5528558Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c row_collapse.c -o row_collapse.o
2021-06-03T19:08:21.6156938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c transpose_list.c -o transpose_list.o
2021-06-03T19:08:21.6646627Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c validate.c -o validate.o
2021-06-03T19:08:21.7110132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl.c -o yajl/yajl.o
2021-06-03T19:08:21.7687773Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o
2021-06-03T19:08:21.7986548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_buf.c -o yajl/yajl_buf.o
2021-06-03T19:08:21.8431219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_encode.c -o yajl/yajl_encode.o
2021-06-03T19:08:21.9339507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_gen.c -o yajl/yajl_gen.o
2021-06-03T19:08:22.1586390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_lex.c -o yajl/yajl_lex.o
2021-06-03T19:08:22.4054807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_parser.c -o yajl/yajl_parser.o
2021-06-03T19:08:22.5660894Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api  -I/usr/local/include  -fvisibility=hidden  -fpic  -g -O2  -c yajl/yajl_tree.c -o yajl/yajl_tree.o
2021-06-03T19:08:22.6975717Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o
2021-06-03T19:08:22.7053427Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:22.7367989Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs
2021-06-03T19:08:22.7369268Z ** R
2021-06-03T19:08:22.7517746Z ** inst
2021-06-03T19:08:22.7533435Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:23.6986498Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob”
2021-06-03T19:08:23.6988464Z ** help
2021-06-03T19:08:23.7280641Z *** installing help indices
2021-06-03T19:08:23.7524975Z ** building package indices
2021-06-03T19:08:23.9386880Z ** installing vignettes
2021-06-03T19:08:23.9490059Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:24.1288725Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:24.1457517Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:24.3364241Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:24.3379786Z * DONE (jsonlite)
2021-06-03T19:08:24.5302784Z * installing *source* package ‘ini’ ...
2021-06-03T19:08:24.5309744Z ** package ‘ini’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:24.5310776Z ** using staged installation
2021-06-03T19:08:24.5419792Z ** R
2021-06-03T19:08:24.5444419Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:24.7703849Z ** help
2021-06-03T19:08:24.7820422Z *** installing help indices
2021-06-03T19:08:24.8030107Z ** building package indices
2021-06-03T19:08:24.9779104Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:25.1423508Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:25.3044525Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:25.3051148Z * DONE (ini)
2021-06-03T19:08:25.5239503Z * installing *source* package ‘gitcreds’ ...
2021-06-03T19:08:25.5257305Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:25.5259076Z ** using staged installation
2021-06-03T19:08:25.5361858Z ** R
2021-06-03T19:08:25.5418087Z ** inst
2021-06-03T19:08:25.5429511Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:25.9919302Z ** help
2021-06-03T19:08:26.0162866Z *** installing help indices
2021-06-03T19:08:26.0376223Z ** building package indices
2021-06-03T19:08:26.2246664Z ** installing vignettes
2021-06-03T19:08:26.2247944Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:26.3877394Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:26.5545667Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:26.5552420Z * DONE (gitcreds)
2021-06-03T19:08:26.7882554Z * installing *source* package ‘zip’ ...
2021-06-03T19:08:26.7908147Z ** package ‘zip’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:26.7909298Z ** using staged installation
2021-06-03T19:08:26.8003470Z ** libs
2021-06-03T19:08:26.8054712Z gcc -g -O2  miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip
2021-06-03T19:08:29.3759423Z gcc -g -O2  miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip
2021-06-03T19:08:31.9154960Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:31.9566546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c miniz.c -o miniz.o
2021-06-03T19:08:34.2732110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rzip.c -o rzip.o
2021-06-03T19:08:34.3654176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c zip.c -o zip.o
2021-06-03T19:08:34.4882302Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unixutils.c -o unixutils.o
2021-06-03T19:08:34.5478628Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:34.5727996Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip
2021-06-03T19:08:34.5774475Z ** R
2021-06-03T19:08:34.5812165Z ** inst
2021-06-03T19:08:34.5821778Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:34.8887006Z ** help
2021-06-03T19:08:34.9094767Z *** installing help indices
2021-06-03T19:08:34.9317927Z ** building package indices
2021-06-03T19:08:35.1141124Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:35.2835533Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:35.3010544Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:35.4675188Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:35.4682198Z * DONE (zip)
2021-06-03T19:08:35.7433467Z * installing *source* package ‘rstudioapi’ ...
2021-06-03T19:08:35.7471708Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:35.7472939Z ** using staged installation
2021-06-03T19:08:35.7588135Z ** R
2021-06-03T19:08:35.7685212Z ** inst
2021-06-03T19:08:35.7702068Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:36.2526419Z ** help
2021-06-03T19:08:36.4075395Z *** installing help indices
2021-06-03T19:08:36.5145916Z *** copying figures
2021-06-03T19:08:36.5148333Z ** building package indices
2021-06-03T19:08:36.7886572Z ** installing vignettes
2021-06-03T19:08:36.7946794Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:36.9580922Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:37.1271118Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:37.1279338Z * DONE (rstudioapi)
2021-06-03T19:08:37.3465625Z * installing *source* package ‘fastmap’ ...
2021-06-03T19:08:37.3483657Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:37.3486733Z ** using staged installation
2021-06-03T19:08:37.3600059Z ** libs
2021-06-03T19:08:37.3653297Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/  -I/usr/local/include  -DR_NO_REMAP -fpic  -g -O2  -c fastmap.cpp -o fastmap.o
2021-06-03T19:08:39.1652509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:39.2100034Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:39.2699545Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs
2021-06-03T19:08:39.2718869Z ** R
2021-06-03T19:08:39.2765775Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:39.6670928Z ** help
2021-06-03T19:08:39.6841039Z *** installing help indices
2021-06-03T19:08:40.6659146Z ** building package indices
2021-06-03T19:08:40.6660942Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c api.c -o api.o
2021-06-03T19:08:40.6669244Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:40.6670386Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:40.6671467Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:40.6672628Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:40.6673496Z * DONE (fastmap)
2021-06-03T19:08:40.6674576Z * installing *source* package ‘yaml’ ...
2021-06-03T19:08:40.6675895Z ** package ‘yaml’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:40.6676788Z ** using staged installation
2021-06-03T19:08:40.6677376Z ** libs
2021-06-03T19:08:40.7896239Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c dumper.c -o dumper.o
2021-06-03T19:08:40.8942176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c emitter.c -o emitter.o
2021-06-03T19:08:41.7623213Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c implicit.c -o implicit.o
2021-06-03T19:08:42.6665980Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c loader.c -o loader.o
2021-06-03T19:08:42.6675309Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c parser.c -o parser.o
2021-06-03T19:08:42.6677322Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c r_emit.c -o r_emit.o
2021-06-03T19:08:42.6679104Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c r_ext.c -o r_ext.o
2021-06-03T19:08:42.7382535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c r_parse.c -o r_parse.o
2021-06-03T19:08:43.1278815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c reader.c -o reader.o
2021-06-03T19:08:43.2301085Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c scanner.c -o scanner.o
2021-06-03T19:08:44.4635635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG  -I/usr/local/include   -fpic  -g -O2  -c writer.c -o writer.o
2021-06-03T19:08:44.5198818Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:44.5492892Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs
2021-06-03T19:08:44.5509854Z ** R
2021-06-03T19:08:44.5537014Z ** inst
2021-06-03T19:08:44.5549721Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:44.7833274Z ** help
2021-06-03T19:08:44.8026178Z *** installing help indices
2021-06-03T19:08:44.8250806Z ** building package indices
2021-06-03T19:08:45.0069340Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:45.1751218Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:45.1933058Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:45.3538694Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:45.3544905Z * DONE (yaml)
2021-06-03T19:08:45.5975869Z * installing *source* package ‘withr’ ...
2021-06-03T19:08:45.6004253Z ** package ‘withr’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:45.6005469Z ** using staged installation
2021-06-03T19:08:45.6149054Z ** R
2021-06-03T19:08:45.6230722Z ** inst
2021-06-03T19:08:45.6238970Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:46.2046504Z ** help
2021-06-03T19:08:46.2783074Z *** installing help indices
2021-06-03T19:08:46.3298648Z *** copying figures
2021-06-03T19:08:46.3300916Z ** building package indices
2021-06-03T19:08:46.5511397Z ** installing vignettes
2021-06-03T19:08:46.5571370Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:46.7235755Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:46.8954610Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:46.8963454Z * DONE (withr)
2021-06-03T19:08:47.1134053Z * installing *source* package ‘whisker’ ...
2021-06-03T19:08:47.1150500Z ** package ‘whisker’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:47.1151728Z ** using staged installation
2021-06-03T19:08:47.1237983Z ** R
2021-06-03T19:08:47.1277169Z ** inst
2021-06-03T19:08:47.1293738Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:47.5021109Z ** help
2021-06-03T19:08:47.5223491Z *** installing help indices
2021-06-03T19:08:47.5439321Z ** building package indices
2021-06-03T19:08:47.7286944Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:47.8930159Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:48.0616210Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:48.0624471Z * DONE (whisker)
2021-06-03T19:08:48.2659563Z * installing *source* package ‘rappdirs’ ...
2021-06-03T19:08:48.2670429Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:48.2671509Z ** using staged installation
2021-06-03T19:08:48.2877376Z ** libs
2021-06-03T19:08:48.2923268Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:08:48.3352157Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c win-path.c -o win-path.o
2021-06-03T19:08:48.3772588Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:08:48.3914773Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs
2021-06-03T19:08:48.3926075Z ** R
2021-06-03T19:08:48.3964698Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:08:48.6729659Z ** help
2021-06-03T19:08:48.6956228Z *** installing help indices
2021-06-03T19:08:48.7156827Z ** building package indices
2021-06-03T19:08:48.9013881Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:08:49.0667522Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:08:49.0835949Z ** testing if installed package can be loaded from final location
2021-06-03T19:08:49.2475291Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:08:49.2481821Z * DONE (rappdirs)
2021-06-03T19:08:49.6841770Z * installing *source* package ‘fs’ ...
2021-06-03T19:08:49.6969423Z ** package ‘fs’ successfully unpacked and MD5 sums checked
2021-06-03T19:08:49.6972030Z ** using staged installation
2021-06-03T19:08:49.7118688Z ** libs
2021-06-03T19:08:49.7177267Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c id.cc -o id.o
2021-06-03T19:08:50.2232138Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c file.cc -o file.o
2021-06-03T19:08:50.6169525Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c utils.cc -o utils.o
2021-06-03T19:08:50.8992174Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c link.cc -o link.o
2021-06-03T19:08:51.1794886Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c path.cc -o path.o
2021-06-03T19:08:51.5443863Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c fs.cc -o fs.o
2021-06-03T19:08:51.6219029Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c init.cc -o init.o
2021-06-03T19:08:51.7049838Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c dir.cc -o dir.o
2021-06-03T19:08:52.1069766Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c getmode.cc -o getmode.o
2021-06-03T19:08:52.3711371Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c error.cc -o error.o
2021-06-03T19:08:52.4652567Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c unix/getmode.cc -o unix/getmode.o
2021-06-03T19:08:52.7547237Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c bsd/setmode.c -o bsd/setmode.o
2021-06-03T19:08:52.8745686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c bsd/strmode.c -o bsd/strmode.o
2021-06-03T19:08:52.9145484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread  -I/usr/local/include   -fpic  -g -O2  -c bsd/reallocarray.c -o bsd/reallocarray.o
2021-06-03T19:08:52.9435391Z (cd libuv-1.38.1 \
2021-06-03T19:08:52.9437359Z && CC="gcc" CFLAGS="-g -O2  -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet)
2021-06-03T19:08:56.9451444Z make --directory=libuv-1.38.1 \
2021-06-03T19:08:56.9452263Z 	HAVE_DTRACE=0
2021-06-03T19:08:56.9546220Z make[1]: Entering directory '/tmp/Rtmp1NvzWl/R.INSTALL73ef7473ac1d/fs/src/libuv-1.38.1'
2021-06-03T19:08:56.9633942Z   CC       src/libuv_la-fs-poll.lo
2021-06-03T19:08:57.5570337Z   CC       src/libuv_la-idna.lo
2021-06-03T19:08:58.1585082Z   CC       src/libuv_la-inet.lo
2021-06-03T19:08:58.7747360Z   CC       src/libuv_la-random.lo
2021-06-03T19:08:59.2739540Z   CC       src/libuv_la-strscpy.lo
2021-06-03T19:08:59.7448097Z   CC       src/libuv_la-threadpool.lo
2021-06-03T19:09:00.3677430Z   CC       src/libuv_la-timer.lo
2021-06-03T19:09:00.9566660Z   CC       src/libuv_la-uv-data-getter-setters.lo
2021-06-03T19:09:01.4597906Z   CC       src/libuv_la-uv-common.lo
2021-06-03T19:09:02.4944167Z   CC       src/libuv_la-version.lo
2021-06-03T19:09:02.9618839Z   CC       src/unix/libuv_la-async.lo
2021-06-03T19:09:03.5488178Z   CC       src/unix/libuv_la-core.lo
2021-06-03T19:09:04.6334446Z   CC       src/unix/libuv_la-dl.lo
2021-06-03T19:09:05.1292252Z   CC       src/unix/libuv_la-fs.lo
2021-06-03T19:09:06.5874247Z   CC       src/unix/libuv_la-getaddrinfo.lo
2021-06-03T19:09:07.1678151Z   CC       src/unix/libuv_la-getnameinfo.lo
2021-06-03T19:09:07.6797997Z   CC       src/unix/libuv_la-loop-watcher.lo
2021-06-03T19:09:08.2603138Z   CC       src/unix/libuv_la-loop.lo
2021-06-03T19:09:08.8157509Z   CC       src/unix/libuv_la-pipe.lo
2021-06-03T19:09:09.4281787Z   CC       src/unix/libuv_la-poll.lo
2021-06-03T19:09:09.9749550Z   CC       src/unix/libuv_la-process.lo
2021-06-03T19:09:10.7186238Z   CC       src/unix/libuv_la-random-devurandom.lo
2021-06-03T19:09:11.2329245Z   CC       src/unix/libuv_la-signal.lo
2021-06-03T19:09:12.1027978Z   CC       src/unix/libuv_la-stream.lo
2021-06-03T19:09:13.1121820Z   CC       src/unix/libuv_la-tcp.lo
2021-06-03T19:09:13.7484876Z   CC       src/unix/libuv_la-thread.lo
2021-06-03T19:09:14.4410334Z   CC       src/unix/libuv_la-tty.lo
2021-06-03T19:09:15.0236444Z   CC       src/unix/libuv_la-udp.lo
2021-06-03T19:09:16.0181449Z   CC       src/unix/libuv_la-linux-core.lo
2021-06-03T19:09:16.9942797Z   CC       src/unix/libuv_la-linux-inotify.lo
2021-06-03T19:09:17.7936378Z   CC       src/unix/libuv_la-linux-syscalls.lo
2021-06-03T19:09:18.2437229Z   CC       src/unix/libuv_la-procfs-exepath.lo
2021-06-03T19:09:18.7452265Z   CC       src/unix/libuv_la-proctitle.lo
2021-06-03T19:09:19.2746331Z   CC       src/unix/libuv_la-random-getrandom.lo
2021-06-03T19:09:19.7647185Z   CC       src/unix/libuv_la-random-sysctl-linux.lo
2021-06-03T19:09:20.2712109Z   CCLD     libuv.la
2021-06-03T19:09:20.4659696Z ar: `u' modifier ignored since `D' is the default (see `U')
2021-06-03T19:09:20.4960678Z make[1]: Leaving directory '/tmp/Rtmp1NvzWl/R.INSTALL73ef7473ac1d/fs/src/libuv-1.38.1'
2021-06-03T19:09:20.4980499Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o utils.o link.o path.o fs.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:20.5848207Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs
2021-06-03T19:09:20.5853249Z ** R
2021-06-03T19:09:20.5950115Z ** inst
2021-06-03T19:09:20.5960037Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:21.5273261Z ** help
2021-06-03T19:09:21.5936515Z *** installing help indices
2021-06-03T19:09:21.6411116Z ** building package indices
2021-06-03T19:09:21.8606575Z ** installing vignettes
2021-06-03T19:09:21.8655575Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:22.0803123Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:22.0989296Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:22.3246827Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:22.3248201Z * DONE (fs)
2021-06-03T19:09:22.5421289Z * installing *source* package ‘clipr’ ...
2021-06-03T19:09:22.5433399Z ** package ‘clipr’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:22.5434488Z ** using staged installation
2021-06-03T19:09:22.5626868Z ** R
2021-06-03T19:09:22.5665037Z ** inst
2021-06-03T19:09:22.5673886Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:22.8726489Z ** help
2021-06-03T19:09:22.8910443Z *** installing help indices
2021-06-03T19:09:22.9110230Z ** building package indices
2021-06-03T19:09:23.0952207Z ** installing vignettes
2021-06-03T19:09:23.0998238Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:23.2672558Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:23.4356516Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:23.4357929Z * DONE (clipr)
2021-06-03T19:09:24.1249885Z * installing *source* package ‘git2r’ ...
2021-06-03T19:09:24.1484280Z ** package ‘git2r’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:24.1485205Z ** using staged installation
2021-06-03T19:09:24.3174976Z checking build system type... x86_64-unknown-linux-gnu
2021-06-03T19:09:24.3176620Z checking host system type... x86_64-unknown-linux-gnu
2021-06-03T19:09:24.3191315Z checking for gcc... gcc
2021-06-03T19:09:24.3740126Z checking whether the C compiler works... yes
2021-06-03T19:09:24.3740925Z checking for C compiler default output file name... a.out
2021-06-03T19:09:24.4075849Z checking for suffix of executables... 
2021-06-03T19:09:24.4459586Z checking whether we are cross compiling... no
2021-06-03T19:09:24.4677721Z checking for suffix of object files... o
2021-06-03T19:09:24.4880910Z checking whether we are using the GNU C compiler... yes
2021-06-03T19:09:24.5080780Z checking whether gcc accepts -g... yes
2021-06-03T19:09:24.5425253Z checking for gcc option to accept ISO C89... none needed
2021-06-03T19:09:24.5432774Z checking for pkg-config... /usr/bin/pkg-config
2021-06-03T19:09:24.5446568Z checking pkg-config is at least version 0.9.0... yes
2021-06-03T19:09:24.5513284Z Found pkg-config cflags and libs!
2021-06-03T19:09:24.6402829Z checking whether the libgit2 version will work in git2r... yes
2021-06-03T19:09:24.7552517Z checking whether the libgit2 function git_buf_dispose is available... yes
2021-06-03T19:09:24.8704635Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes
2021-06-03T19:09:24.9863016Z checking whether the libgit2 function git_error_last is available... yes
2021-06-03T19:09:25.0846933Z checking whether the libgit2 function git_oid_is_zero is available... no
2021-06-03T19:09:25.0850651Z ----- Results of the git2r package configure -----
2021-06-03T19:09:25.0851215Z 
2021-06-03T19:09:25.0852210Z   PKG_CFLAGS:  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR
2021-06-03T19:09:25.0853100Z   PKG_LIBS: -lgit2
2021-06-03T19:09:25.0853461Z 
2021-06-03T19:09:25.0854191Z --------------------------------------------------
2021-06-03T19:09:25.1034552Z configure: creating ./config.status
2021-06-03T19:09:25.1736171Z config.status: creating src/Makevars
2021-06-03T19:09:25.2276597Z ** libs
2021-06-03T19:09:25.2335760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r.c -o git2r.o
2021-06-03T19:09:25.2963008Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_S3.c -o git2r_S3.o
2021-06-03T19:09:25.3435439Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_arg.c -o git2r_arg.o
2021-06-03T19:09:25.4882908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_blame.c -o git2r_blame.o
2021-06-03T19:09:25.5726342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_blob.c -o git2r_blob.o
2021-06-03T19:09:25.6866862Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_branch.c -o git2r_branch.o
2021-06-03T19:09:25.8990788Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_checkout.c -o git2r_checkout.o
2021-06-03T19:09:25.9848844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_clone.c -o git2r_clone.o
2021-06-03T19:09:26.0695478Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_commit.c -o git2r_commit.o
2021-06-03T19:09:26.2100064Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_config.c -o git2r_config.o
2021-06-03T19:09:26.3572936Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_cred.c -o git2r_cred.o
2021-06-03T19:09:26.4416677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_diff.c -o git2r_diff.o
2021-06-03T19:09:26.6743339Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_error.c -o git2r_error.o
2021-06-03T19:09:26.7346058Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_graph.c -o git2r_graph.o
2021-06-03T19:09:26.8127400Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_index.c -o git2r_index.o
2021-06-03T19:09:26.8925036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_libgit2.c -o git2r_libgit2.o
2021-06-03T19:09:26.9668779Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_merge.c -o git2r_merge.o
2021-06-03T19:09:27.1299628Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_note.c -o git2r_note.o
2021-06-03T19:09:27.2505883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_object.c -o git2r_object.o
2021-06-03T19:09:27.3277582Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_odb.c -o git2r_odb.o
2021-06-03T19:09:27.4782374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_oid.c -o git2r_oid.o
2021-06-03T19:09:27.5381070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_push.c -o git2r_push.o
2021-06-03T19:09:27.6140039Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_reference.c -o git2r_reference.o
2021-06-03T19:09:27.7026410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_reflog.c -o git2r_reflog.o
2021-06-03T19:09:27.7830799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_remote.c -o git2r_remote.o
2021-06-03T19:09:27.9469724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_repository.c -o git2r_repository.o
2021-06-03T19:09:28.0927520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_reset.c -o git2r_reset.o
2021-06-03T19:09:28.1684402Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_revparse.c -o git2r_revparse.o
2021-06-03T19:09:28.2428709Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_revwalk.c -o git2r_revwalk.o
2021-06-03T19:09:28.4092480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_signature.c -o git2r_signature.o
2021-06-03T19:09:28.4838532Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_stash.c -o git2r_stash.o
2021-06-03T19:09:28.5929185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_status.c -o git2r_status.o
2021-06-03T19:09:28.7412150Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_tag.c -o git2r_tag.o
2021-06-03T19:09:28.8577806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_transfer.c -o git2r_transfer.o
2021-06-03T19:09:28.9184544Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic  -g -O2  -c git2r_tree.c -o git2r_tree.o
2021-06-03T19:09:29.0237642Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:29.0612613Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs
2021-06-03T19:09:29.0630019Z ** R
2021-06-03T19:09:29.0821934Z ** inst
2021-06-03T19:09:29.0830817Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:29.9517408Z ** help
2021-06-03T19:09:30.1771649Z *** installing help indices
2021-06-03T19:09:30.3492496Z ** building package indices
2021-06-03T19:09:30.6634335Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:30.8405205Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:30.8580681Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:31.0451221Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:31.0462430Z * DONE (git2r)
2021-06-03T19:09:31.2526132Z * installing *source* package ‘askpass’ ...
2021-06-03T19:09:31.2534523Z ** package ‘askpass’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:31.2535496Z ** using staged installation
2021-06-03T19:09:31.2664186Z ** libs
2021-06-03T19:09:31.2712189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c askpass.c -o askpass.o
2021-06-03T19:09:31.3200165Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:31.3403716Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs
2021-06-03T19:09:31.3416206Z ** R
2021-06-03T19:09:31.3443477Z ** inst
2021-06-03T19:09:31.3451564Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:31.5804617Z ** help
2021-06-03T19:09:31.5967537Z *** installing help indices
2021-06-03T19:09:31.6103197Z ** building package indices
2021-06-03T19:09:31.7855957Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:31.9504418Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:31.9671073Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:32.1283109Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:32.1289573Z * DONE (askpass)
2021-06-03T19:09:32.4456863Z * installing *source* package ‘cli’ ...
2021-06-03T19:09:32.4531494Z ** package ‘cli’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:32.4532694Z ** using staged installation
2021-06-03T19:09:32.4680369Z ** R
2021-06-03T19:09:32.4940869Z ** inst
2021-06-03T19:09:32.4952847Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:34.7829298Z ** help
2021-06-03T19:09:34.9652035Z *** installing help indices
2021-06-03T19:09:35.0841049Z *** copying figures
2021-06-03T19:09:35.0842358Z ** building package indices
2021-06-03T19:09:35.3733625Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:35.5803201Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:35.8322453Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:35.8349221Z * DONE (cli)
2021-06-03T19:09:36.1395672Z * installing *source* package ‘purrr’ ...
2021-06-03T19:09:36.1447009Z ** package ‘purrr’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:36.1448194Z ** using staged installation
2021-06-03T19:09:36.1592075Z ** libs
2021-06-03T19:09:36.1643232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c backports.c -o backports.o
2021-06-03T19:09:36.1999686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c coerce.c -o coerce.o
2021-06-03T19:09:36.2853207Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c conditions.c -o conditions.o
2021-06-03T19:09:36.3687545Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c flatten.c -o flatten.o
2021-06-03T19:09:36.4721207Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:09:36.5137432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c map.c -o map.o
2021-06-03T19:09:36.6261972Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pluck.c -o pluck.o
2021-06-03T19:09:36.7528997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c transpose.c -o transpose.o
2021-06-03T19:09:36.8352950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:09:36.8868418Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:36.9127349Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs
2021-06-03T19:09:36.9128538Z ** R
2021-06-03T19:09:36.9279752Z ** inst
2021-06-03T19:09:36.9288804Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:38.0674424Z ** help
2021-06-03T19:09:38.2284771Z *** installing help indices
2021-06-03T19:09:38.3232819Z *** copying figures
2021-06-03T19:09:38.3237522Z ** building package indices
2021-06-03T19:09:38.5841276Z ** installing vignettes
2021-06-03T19:09:38.5915531Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:38.7795346Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:38.7966205Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:39.0010957Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:39.0025718Z * DONE (purrr)
2021-06-03T19:09:39.2480531Z * installing *source* package ‘lifecycle’ ...
2021-06-03T19:09:39.2505959Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:39.2507157Z ** using staged installation
2021-06-03T19:09:39.2640181Z ** R
2021-06-03T19:09:39.2684467Z ** inst
2021-06-03T19:09:39.2695488Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:39.6538928Z ** help
2021-06-03T19:09:39.6840134Z *** installing help indices
2021-06-03T19:09:39.7072045Z *** copying figures
2021-06-03T19:09:39.7076717Z ** building package indices
2021-06-03T19:09:39.8928283Z ** installing vignettes
2021-06-03T19:09:39.8979699Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:40.0787760Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:40.2598308Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:40.2606826Z * DONE (lifecycle)
2021-06-03T19:09:40.4617954Z * installing *source* package ‘cachem’ ...
2021-06-03T19:09:40.4629250Z ** package ‘cachem’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:40.4630314Z ** using staged installation
2021-06-03T19:09:40.4755273Z ** libs
2021-06-03T19:09:40.4802292Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c cache.c -o cache.o
2021-06-03T19:09:40.5286165Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:09:40.5720485Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:40.5928467Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs
2021-06-03T19:09:40.6001832Z ** R
2021-06-03T19:09:40.6060955Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:41.0876780Z ** help
2021-06-03T19:09:41.1099656Z *** installing help indices
2021-06-03T19:09:41.1285092Z ** building package indices
2021-06-03T19:09:41.3116653Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:41.4974886Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:41.5146406Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:41.7033222Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:41.7041411Z * DONE (cachem)
2021-06-03T19:09:42.1252973Z * installing *source* package ‘openssl’ ...
2021-06-03T19:09:42.1372333Z ** package ‘openssl’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:42.1373420Z ** using staged installation
2021-06-03T19:09:42.1452597Z Found pkg-config cflags and libs!
2021-06-03T19:09:42.2260450Z Using PKG_CFLAGS=
2021-06-03T19:09:42.3688220Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1
2021-06-03T19:09:42.3837398Z ** libs
2021-06-03T19:09:42.3891113Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o
2021-06-03T19:09:42.3915135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c aes.c -o aes.o
2021-06-03T19:09:42.4707731Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c base64.c -o base64.o
2021-06-03T19:09:42.5449684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c bignum.c -o bignum.o
2021-06-03T19:09:42.6431460Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c cert.c -o cert.o
2021-06-03T19:09:42.7867705Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c compatibility.c -o compatibility.o
2021-06-03T19:09:42.8494895Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c diffie.c -o diffie.o
2021-06-03T19:09:42.9400162Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c envelope.c -o envelope.o
2021-06-03T19:09:43.0536853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c error.c -o error.o
2021-06-03T19:09:43.1052324Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c hash.c -o hash.o
2021-06-03T19:09:43.1990658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c info.c -o info.o
2021-06-03T19:09:43.2625787Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c keygen.c -o keygen.o
2021-06-03T19:09:43.3629263Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c keys.c -o keys.o
2021-06-03T19:09:43.4898591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c onload.c -o onload.o
2021-06-03T19:09:43.5758300Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c openssh.c -o openssh.o
2021-06-03T19:09:43.7567376Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c password.c -o password.o
2021-06-03T19:09:43.8082721Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pbkdf.c -o pbkdf.o
2021-06-03T19:09:43.8499691Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pem.c -o pem.o
2021-06-03T19:09:43.9751076Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pkcs12.c -o pkcs12.o
2021-06-03T19:09:44.1105040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pkcs7.c -o pkcs7.o
2021-06-03T19:09:44.2319827Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rand.c -o rand.o
2021-06-03T19:09:44.2769966Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rsa.c -o rsa.o
2021-06-03T19:09:44.3715342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c signing.c -o signing.o
2021-06-03T19:09:44.4870491Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c ssl.c -o ssl.o
2021-06-03T19:09:44.6260481Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c stream.c -o stream.o
2021-06-03T19:09:44.7387466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c write.c -o write.o
2021-06-03T19:09:44.8614631Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c x25519.c -o x25519.o
2021-06-03T19:09:44.9831249Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o
2021-06-03T19:09:45.0490185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c bcrypt/blowfish.c -o bcrypt/blowfish.o
2021-06-03T19:09:45.2210031Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o
2021-06-03T19:09:45.2263818Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:45.2815263Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs
2021-06-03T19:09:45.2830977Z ** R
2021-06-03T19:09:45.2933015Z ** inst
2021-06-03T19:09:45.2980612Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:46.1680086Z ** help
2021-06-03T19:09:46.2177196Z *** installing help indices
2021-06-03T19:09:46.2563145Z ** building package indices
2021-06-03T19:09:46.4646588Z ** installing vignettes
2021-06-03T19:09:46.4716966Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:46.6500190Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:46.6672096Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:46.8571495Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:46.8583755Z * DONE (openssl)
2021-06-03T19:09:47.0636939Z * installing *source* package ‘memoise’ ...
2021-06-03T19:09:47.0647862Z ** package ‘memoise’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:47.0648958Z ** using staged installation
2021-06-03T19:09:47.0796089Z ** R
2021-06-03T19:09:47.0890269Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:47.4623482Z ** help
2021-06-03T19:09:47.4869093Z *** installing help indices
2021-06-03T19:09:47.5101715Z ** building package indices
2021-06-03T19:09:47.6987963Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:47.8852486Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:48.0752709Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:48.0758900Z * DONE (memoise)
2021-06-03T19:09:48.3824669Z * installing *source* package ‘httr’ ...
2021-06-03T19:09:48.3871367Z ** package ‘httr’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:48.3872433Z ** using staged installation
2021-06-03T19:09:48.4017783Z ** R
2021-06-03T19:09:48.4184111Z ** demo
2021-06-03T19:09:48.4194359Z ** inst
2021-06-03T19:09:48.4207261Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:50.7133779Z ** help
2021-06-03T19:09:50.8606843Z *** installing help indices
2021-06-03T19:09:50.9570079Z ** building package indices
2021-06-03T19:09:51.2246603Z ** installing vignettes
2021-06-03T19:09:51.2289841Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:51.3960272Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:51.6089715Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:51.6114988Z * DONE (httr)
2021-06-03T19:09:51.8331407Z * installing *source* package ‘credentials’ ...
2021-06-03T19:09:51.8347743Z ** package ‘credentials’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:51.8348997Z ** using staged installation
2021-06-03T19:09:51.8475763Z ** R
2021-06-03T19:09:51.8518238Z ** inst
2021-06-03T19:09:51.8528698Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:52.2601324Z ** help
2021-06-03T19:09:52.2778479Z *** installing help indices
2021-06-03T19:09:52.2971974Z ** building package indices
2021-06-03T19:09:52.4763884Z ** installing vignettes
2021-06-03T19:09:52.4817391Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:52.7320606Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:52.9549470Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:52.9556487Z * DONE (credentials)
2021-06-03T19:09:53.1821825Z * installing *source* package ‘gh’ ...
2021-06-03T19:09:53.1842062Z ** package ‘gh’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:53.1845081Z ** using staged installation
2021-06-03T19:09:53.1987261Z ** R
2021-06-03T19:09:53.2066639Z ** inst
2021-06-03T19:09:53.2075362Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:54.1653534Z ** help
2021-06-03T19:09:54.1927243Z *** installing help indices
2021-06-03T19:09:54.2203922Z ** building package indices
2021-06-03T19:09:54.4067437Z ** installing vignettes
2021-06-03T19:09:54.4122233Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:54.6443824Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:54.8859021Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:54.8871286Z * DONE (gh)
2021-06-03T19:09:55.1322349Z * installing *source* package ‘gert’ ...
2021-06-03T19:09:55.1347257Z ** package ‘gert’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:55.1348345Z ** using staged installation
2021-06-03T19:09:55.1438361Z Found pkg-config cflags and libs!
2021-06-03T19:09:55.2256798Z Using PKG_CFLAGS=
2021-06-03T19:09:55.2258148Z Using PKG_LIBS=-lgit2
2021-06-03T19:09:55.2617804Z Configuration OK!
2021-06-03T19:09:55.2762644Z ** libs
2021-06-03T19:09:55.2810970Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o
2021-06-03T19:09:55.2835387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c branch.c -o branch.o
2021-06-03T19:09:55.4823085Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c clone.c -o clone.o
2021-06-03T19:09:55.6969059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c commit.c -o commit.o
2021-06-03T19:09:55.9065389Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c config.c -o config.o
2021-06-03T19:09:55.9876253Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c conflicts.c -o conflicts.o
2021-06-03T19:09:56.0573382Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c files.c -o files.o
2021-06-03T19:09:56.1962179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:09:56.2562327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c merge.c -o merge.o
2021-06-03T19:09:56.3535119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c rebase.c -o rebase.o
2021-06-03T19:09:56.4576654Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c stash.c -o stash.o
2021-06-03T19:09:56.5365176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c submodules.c -o submodules.o
2021-06-03T19:09:56.6427654Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c tag.c -o tag.o
2021-06-03T19:09:56.7199113Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:09:56.8337379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c version.c -o version.o
2021-06-03T19:09:56.9046257Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:09:56.9333102Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs
2021-06-03T19:09:56.9347579Z ** R
2021-06-03T19:09:56.9430328Z ** inst
2021-06-03T19:09:56.9438867Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:09:57.6168764Z ** help
2021-06-03T19:09:57.6739279Z *** installing help indices
2021-06-03T19:09:57.7149208Z ** building package indices
2021-06-03T19:09:57.9230274Z ** installing vignettes
2021-06-03T19:09:57.9321102Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:09:58.1445506Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:09:58.1631983Z ** testing if installed package can be loaded from final location
2021-06-03T19:09:58.3803521Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:09:58.3814137Z * DONE (gert)
2021-06-03T19:09:58.7630586Z * installing *source* package ‘usethis’ ...
2021-06-03T19:09:58.7706175Z ** package ‘usethis’ successfully unpacked and MD5 sums checked
2021-06-03T19:09:58.7707331Z ** using staged installation
2021-06-03T19:09:58.7906845Z ** R
2021-06-03T19:09:58.8238387Z ** inst
2021-06-03T19:09:58.8270119Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:01.3098838Z ** help
2021-06-03T19:10:01.4969908Z *** installing help indices
2021-06-03T19:10:01.6171140Z *** copying figures
2021-06-03T19:10:01.6176194Z ** building package indices
2021-06-03T19:10:01.9113795Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:02.1916838Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:02.5096563Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:02.5128574Z * DONE (usethis)
2021-06-03T19:10:02.5236405Z 
2021-06-03T19:10:02.5237431Z The downloaded source packages are in
2021-06-03T19:10:02.5238597Z 	‘/tmp/Rtmp4xm9UN/downloaded_packages’
2021-06-03T19:10:02.5241182Z Running `R CMD build`...
2021-06-03T19:10:04.5593781Z * checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc24bc7c8c0/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK
2021-06-03T19:10:04.5595456Z * preparing ‘tic’:
2021-06-03T19:10:04.5596612Z * checking DESCRIPTION meta-information ... OK
2021-06-03T19:10:04.5597763Z * installing the package to process help pages
2021-06-03T19:10:04.5599109Z * checking for LF line-endings in source and make files and shell scripts
2021-06-03T19:10:04.5600221Z * checking for empty or unneeded directories
2021-06-03T19:10:04.5601375Z Removed empty directory ‘tic/.circleci’
2021-06-03T19:10:04.5602730Z Removed empty directory ‘tic/pkgdown’
2021-06-03T19:10:04.5603745Z * building ‘tic_0.10.0.tar.gz’
2021-06-03T19:10:04.5606178Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:10:04.5607305Z (as ‘lib’ is unspecified)
2021-06-03T19:10:04.8797548Z * installing *source* package ‘tic’ ...
2021-06-03T19:10:04.8798932Z ** using staged installation
2021-06-03T19:10:04.9021892Z ** R
2021-06-03T19:10:04.9206436Z ** inst
2021-06-03T19:10:04.9237591Z ** preparing package for lazy loading
2021-06-03T19:10:05.2649159Z ** help
2021-06-03T19:10:05.4137009Z *** installing help indices
2021-06-03T19:10:05.5059824Z *** copying figures
2021-06-03T19:10:05.5064143Z ** building package indices
2021-06-03T19:10:05.7628758Z ** installing vignettes
2021-06-03T19:10:05.7671859Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:06.0127537Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:06.3079739Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:06.3108193Z * DONE (tic)
2021-06-03T19:10:06.3234036Z Using github PAT from envvar GITHUB_PAT
2021-06-03T19:10:06.5596209Z Downloading GitHub repo muschellij2/ghtravis@HEAD
2021-06-03T19:10:07.3134287Z desc        (1.3.0 -> 7be86f2f7...) [GitHub]
2021-06-03T19:10:07.3135502Z utf8        (NA    -> 1.2.1       ) [CRAN]
2021-06-03T19:10:07.3137910Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools
2021-06-03T19:10:07.3140231Z vctrs       (NA    -> 0.3.8       ) [CRAN]
2021-06-03T19:10:07.3141145Z pkgconfig   (NA    -> 2.0.3       ) [CRAN]
2021-06-03T19:10:07.3142057Z pillar      (NA    -> 1.6.1       ) [CRAN]
2021-06-03T19:10:07.3143206Z Installing packages into ‘/home/runner/work/_temp/Library’
2021-06-03T19:10:07.3144868Z (as ‘lib’ is unspecified)
2021-06-03T19:10:07.3145650Z tibble      (NA    -> 3.1.2       ) [CRAN]
2021-06-03T19:10:07.3146621Z rematch2    (NA    -> 2.1.2       ) [CRAN]
2021-06-03T19:10:07.3147507Z fansi       (NA    -> 0.5.0       ) [CRAN]
2021-06-03T19:10:07.3148369Z diffobj     (NA    -> 0.3.4       ) [CRAN]
2021-06-03T19:10:07.3149209Z waldo       (NA    -> 0.2.5       ) [CRAN]
2021-06-03T19:10:07.3150058Z ps          (NA    -> 1.6.0       ) [CRAN]
2021-06-03T19:10:07.3150924Z processx    (NA    -> 3.5.2       ) [CRAN]
2021-06-03T19:10:07.3151794Z praise      (NA    -> 1.0.0       ) [CRAN]
2021-06-03T19:10:07.3152672Z pkgload     (NA    -> 1.2.1       ) [CRAN]
2021-06-03T19:10:07.3153557Z evaluate    (NA    -> 0.14        ) [CRAN]
2021-06-03T19:10:07.3154437Z ellipsis    (NA    -> 0.3.2       ) [CRAN]
2021-06-03T19:10:07.3155352Z digest      (NA    -> 0.6.27      ) [CRAN]
2021-06-03T19:10:07.3156226Z callr       (NA    -> 3.7.0       ) [CRAN]
2021-06-03T19:10:07.3157675Z brio        (NA    -> 1.1.2       ) [CRAN]
2021-06-03T19:10:07.3158378Z xml2        (NA    -> 1.3.2       ) [CRAN]
2021-06-03T19:10:07.3159069Z xfun        (NA    -> 0.23        ) [CRAN]
2021-06-03T19:10:07.3159764Z markdown    (NA    -> 1.1         ) [CRAN]
2021-06-03T19:10:07.3160482Z highr       (NA    -> 0.9         ) [CRAN]
2021-06-03T19:10:07.3161177Z stringr     (NA    -> 1.4.0       ) [CRAN]
2021-06-03T19:10:07.3161895Z stringi     (NA    -> 1.6.2       ) [CRAN]
2021-06-03T19:10:07.3162602Z Rcpp        (NA    -> 1.0.6       ) [CRAN]
2021-06-03T19:10:07.3163281Z knitr       (NA    -> 1.33        ) [CRAN]
2021-06-03T19:10:07.3164010Z commonmark  (NA    -> 1.7         ) [CRAN]
2021-06-03T19:10:07.3164734Z brew        (NA    -> 1.0-6       ) [CRAN]
2021-06-03T19:10:07.3165422Z xopen       (NA    -> 1.0.0       ) [CRAN]
2021-06-03T19:10:07.3166732Z sessioninfo (NA    -> 1.1.1       ) [CRAN]
2021-06-03T19:10:07.3167499Z prettyunits (NA    -> 1.1.1       ) [CRAN]
2021-06-03T19:10:07.3168550Z pkgbuild    (NA    -> 1.2.0       ) [CRAN]
2021-06-03T19:10:07.3169386Z testthat    (NA    -> 3.0.2       ) [CRAN]
2021-06-03T19:10:07.3170123Z rversions   (NA    -> 2.1.1       ) [CRAN]
2021-06-03T19:10:07.3170863Z roxygen2    (NA    -> 7.1.1       ) [CRAN]
2021-06-03T19:10:07.3171599Z rcmdcheck   (NA    -> 1.3.3       ) [CRAN]
2021-06-03T19:10:07.3172321Z devtools    (NA    -> 2.4.1       ) [CRAN]
2021-06-03T19:10:20.9551216Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz'
2021-06-03T19:10:21.3434384Z Content type 'binary/octet-stream' length 237667 bytes (232 KB)
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2021-06-03T19:10:21.3636347Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz'
2021-06-03T19:10:22.5234835Z Content type 'binary/octet-stream' length 784938 bytes (766 KB)
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2021-06-03T19:10:22.5521298Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz'
2021-06-03T19:10:23.3065985Z Content type 'application/x-tar' length 6108 bytes
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2021-06-03T19:10:23.3101557Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz'
2021-06-03T19:10:24.1918913Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB)
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2021-06-03T19:10:24.1923160Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz'
2021-06-03T19:10:24.1924960Z Content type 'binary/octet-stream' length 689638 bytes (673 KB)
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2021-06-03T19:10:24.1928920Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz'
2021-06-03T19:10:24.3018101Z Content type 'binary/octet-stream' length 13441 bytes (13 KB)
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2021-06-03T19:10:24.3055300Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.5.0.tar.gz'
2021-06-03T19:10:25.7930811Z Content type 'binary/octet-stream' length 303555 bytes (296 KB)
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2021-06-03T19:10:25.8262094Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz'
2021-06-03T19:10:26.1675630Z Content type 'binary/octet-stream' length 476003 bytes (464 KB)
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2021-06-03T19:10:26.1919992Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz'
2021-06-03T19:10:26.5302736Z Content type 'binary/octet-stream' length 26261 bytes (25 KB)
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2021-06-03T19:10:26.5336462Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz'
2021-06-03T19:10:26.8205249Z Content type 'binary/octet-stream' length 120042 bytes (117 KB)
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2021-06-03T19:10:26.8342579Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz'
2021-06-03T19:10:27.1486747Z Content type 'binary/octet-stream' length 141949 bytes (138 KB)
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2021-06-03T19:10:27.1643788Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz'
2021-06-03T19:10:27.5663240Z Content type 'application/x-tar' length 6100 bytes
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2021-06-03T19:10:27.5696683Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz'
2021-06-03T19:10:27.8555594Z Content type 'binary/octet-stream' length 60723 bytes (59 KB)
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2021-06-03T19:10:27.8638146Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz'
2021-06-03T19:10:28.1531731Z Content type 'application/x-tar' length 23661 bytes (23 KB)
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2021-06-03T19:10:28.1569410Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz'
2021-06-03T19:10:28.4234495Z Content type 'binary/octet-stream' length 8130 bytes
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2021-06-03T19:10:28.4270408Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz'
2021-06-03T19:10:28.6986532Z Content type 'binary/octet-stream' length 164442 bytes (160 KB)
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2021-06-03T19:10:28.7153150Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz'
2021-06-03T19:10:28.8957308Z Content type 'binary/octet-stream' length 74923 bytes (73 KB)
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2021-06-03T19:10:28.9052747Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz'
2021-06-03T19:10:29.1821129Z Content type 'binary/octet-stream' length 12096 bytes (11 KB)
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2021-06-03T19:10:29.1855438Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz'
2021-06-03T19:10:29.6945788Z Content type 'binary/octet-stream' length 272736 bytes (266 KB)
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2021-06-03T19:10:29.7144401Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz'
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2021-06-03T19:10:30.0171481Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz'
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2021-06-03T19:10:33.6335554Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz'
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2021-06-03T19:10:34.1957219Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/testthat_3.0.2.tar.gz'
2021-06-03T19:10:34.3517161Z Content type 'binary/octet-stream' length 678280 bytes (662 KB)
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2021-06-03T19:10:34.3762302Z 
2021-06-03T19:10:34.3793566Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.1.1.tar.gz'
2021-06-03T19:10:34.6629118Z Content type 'binary/octet-stream' length 41807 bytes (40 KB)
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2021-06-03T19:10:34.6678779Z 
2021-06-03T19:10:34.6710559Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz'
2021-06-03T19:10:34.9450709Z Content type 'binary/octet-stream' length 255098 bytes (249 KB)
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2021-06-03T19:10:34.9607312Z downloaded 249 KB
2021-06-03T19:10:34.9607846Z 
2021-06-03T19:10:34.9694492Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz'
2021-06-03T19:10:35.2731539Z Content type 'application/x-tar' length 44991 bytes (43 KB)
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2021-06-03T19:10:35.2735381Z downloaded 43 KB
2021-06-03T19:10:35.2735694Z 
2021-06-03T19:10:35.2770708Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz'
2021-06-03T19:10:35.6659988Z Content type 'binary/octet-stream' length 370450 bytes (361 KB)
2021-06-03T19:10:35.6844085Z ==================================================
2021-06-03T19:10:35.6844931Z downloaded 361 KB
2021-06-03T19:10:35.6845398Z 
2021-06-03T19:10:35.9828414Z * installing *source* package ‘utf8’ ...
2021-06-03T19:10:35.9887789Z ** package ‘utf8’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:35.9888971Z ** using staged installation
2021-06-03T19:10:36.0011061Z ** libs
2021-06-03T19:10:36.0061609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c as_utf8.c -o as_utf8.o
2021-06-03T19:10:36.0682477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c bytes.c -o bytes.o
2021-06-03T19:10:36.2027252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c context.c -o context.o
2021-06-03T19:10:36.2601029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:10:36.2980078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c render.c -o render.o
2021-06-03T19:10:36.3573550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c render_table.c -o render_table.o
2021-06-03T19:10:36.5102568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c string.c -o string.o
2021-06-03T19:10:36.5680551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c text.c -o text.o
2021-06-03T19:10:36.6897252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8_encode.c -o utf8_encode.o
2021-06-03T19:10:36.7648780Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8_format.c -o utf8_format.o
2021-06-03T19:10:36.8494387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8_normalize.c -o utf8_normalize.o
2021-06-03T19:10:36.9129826Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8_valid.c -o utf8_valid.o
2021-06-03T19:10:36.9673923Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8_width.c -o utf8_width.o
2021-06-03T19:10:37.0237704Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c util.c -o util.o
2021-06-03T19:10:37.0737551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/array.c -o utf8lite/src/array.o
2021-06-03T19:10:37.1255229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/char.c -o utf8lite/src/char.o
2021-06-03T19:10:37.1902969Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/encode.c -o utf8lite/src/encode.o
2021-06-03T19:10:37.2449680Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/error.c -o utf8lite/src/error.o
2021-06-03T19:10:37.2823377Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/escape.c -o utf8lite/src/escape.o
2021-06-03T19:10:37.3419082Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/graph.c -o utf8lite/src/graph.o
2021-06-03T19:10:37.3846748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o
2021-06-03T19:10:37.5779657Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o
2021-06-03T19:10:37.8625983Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/render.c -o utf8lite/src/render.o
2021-06-03T19:10:38.0244969Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/text.c -o utf8lite/src/text.o
2021-06-03T19:10:38.0904025Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o
2021-06-03T19:10:38.1493780Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o
2021-06-03T19:10:38.2168213Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -Iutf8lite/src -fpic  -g -O2  -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o
2021-06-03T19:10:38.2843359Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o
2021-06-03T19:10:38.2913344Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:10:38.3208604Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs
2021-06-03T19:10:38.3255073Z ** R
2021-06-03T19:10:38.3301528Z ** inst
2021-06-03T19:10:38.3309756Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:38.7556254Z ** help
2021-06-03T19:10:38.7834338Z *** installing help indices
2021-06-03T19:10:38.8062342Z ** building package indices
2021-06-03T19:10:38.9988065Z ** installing vignettes
2021-06-03T19:10:38.9988899Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:39.1663875Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:10:39.1841397Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:39.3502088Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:39.3509114Z * DONE (utf8)
2021-06-03T19:10:39.5504388Z * installing *source* package ‘pkgconfig’ ...
2021-06-03T19:10:39.5513366Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:39.5514481Z ** using staged installation
2021-06-03T19:10:39.5623482Z ** R
2021-06-03T19:10:39.5647332Z ** inst
2021-06-03T19:10:39.5654808Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:39.7821272Z ** help
2021-06-03T19:10:39.8021708Z *** installing help indices
2021-06-03T19:10:39.8179856Z ** building package indices
2021-06-03T19:10:39.9975511Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:40.1640514Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:40.3266373Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:40.3270752Z * DONE (pkgconfig)
2021-06-03T19:10:40.5872700Z * installing *source* package ‘fansi’ ...
2021-06-03T19:10:40.5907482Z ** package ‘fansi’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:40.5908664Z ** using staged installation
2021-06-03T19:10:40.6060778Z ** libs
2021-06-03T19:10:40.6110964Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c assumptions.c -o assumptions.o
2021-06-03T19:10:40.6485101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c has.c -o has.o
2021-06-03T19:10:40.7067415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:10:40.7509457Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c nchar.c -o nchar.o
2021-06-03T19:10:40.8173136Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c read.c -o read.o
2021-06-03T19:10:41.2433706Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rnchar.c -o rnchar.o
2021-06-03T19:10:41.2792689Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c state.c -o state.o
2021-06-03T19:10:41.6233032Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c strip.c -o strip.o
2021-06-03T19:10:41.7540356Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c strsplit.c -o strsplit.o
2021-06-03T19:10:41.7977957Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c tabs.c -o tabs.o
2021-06-03T19:10:41.9134521Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c tohtml.c -o tohtml.o
2021-06-03T19:10:42.2846856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unhandled.c -o unhandled.o
2021-06-03T19:10:42.3809577Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unique.c -o unique.o
2021-06-03T19:10:42.4342029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c utf8.c -o utf8.o
2021-06-03T19:10:42.4919807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:10:42.6499122Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c wrap.c -o wrap.o
2021-06-03T19:10:42.9430144Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:10:42.9727428Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs
2021-06-03T19:10:42.9728724Z ** R
2021-06-03T19:10:42.9814936Z ** inst
2021-06-03T19:10:42.9824113Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:43.5882513Z ** help
2021-06-03T19:10:43.6576106Z *** installing help indices
2021-06-03T19:10:43.7010333Z ** building package indices
2021-06-03T19:10:43.9112090Z ** installing vignettes
2021-06-03T19:10:43.9166939Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:44.0838865Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:10:44.1009789Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:44.2764085Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:44.2764802Z * DONE (fansi)
2021-06-03T19:10:44.6841534Z * installing *source* package ‘diffobj’ ...
2021-06-03T19:10:44.6936188Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:44.6937479Z ** using staged installation
2021-06-03T19:10:44.7079053Z ** libs
2021-06-03T19:10:44.7121658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c diff.c -o diff.o
2021-06-03T19:10:44.9047302Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c diffobj.c -o diffobj.o
2021-06-03T19:10:44.9607753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:10:45.0030172Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:10:45.0247434Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs
2021-06-03T19:10:45.0254971Z ** R
2021-06-03T19:10:45.0634181Z ** inst
2021-06-03T19:10:45.0648649Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:50.7680914Z ** help
2021-06-03T19:10:50.9544221Z *** installing help indices
2021-06-03T19:10:51.0834105Z ** building package indices
2021-06-03T19:10:51.3472975Z ** installing vignettes
2021-06-03T19:10:51.3564668Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:51.6324095Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:10:51.6495437Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:52.0394928Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:52.0470839Z * DONE (diffobj)
2021-06-03T19:10:52.3237018Z * installing *source* package ‘ps’ ...
2021-06-03T19:10:52.3273758Z ** package ‘ps’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:52.3274854Z ** using staged installation
2021-06-03T19:10:52.5117742Z ** libs
2021-06-03T19:10:52.5167171Z gcc -g -O2  -Wall px.c -o px
2021-06-03T19:10:52.6377513Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:10:52.6988960Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c api-common.c -o api-common.o
2021-06-03T19:10:52.7604327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c common.c -o common.o
2021-06-03T19:10:52.8214861Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c extra.c -o extra.o
2021-06-03T19:10:52.9722987Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c dummy.c -o dummy.o
2021-06-03T19:10:53.6999779Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c error-codes.c -o error-codes.o
2021-06-03T19:10:53.7008920Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c posix.c -o posix.o
2021-06-03T19:10:53.7010727Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c api-posix.c -o api-posix.o
2021-06-03T19:10:53.7012360Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c linux.c -o linux.o
2021-06-03T19:10:53.7014746Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c api-linux.c -o api-linux.o
2021-06-03T19:10:54.0446095Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:10:54.0728242Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps
2021-06-03T19:10:54.0738700Z ** R
2021-06-03T19:10:54.0840697Z ** inst
2021-06-03T19:10:54.0849983Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:55.0185431Z ** help
2021-06-03T19:10:55.1494794Z *** installing help indices
2021-06-03T19:10:55.2341028Z ** building package indices
2021-06-03T19:10:55.4915151Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:55.6619240Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:10:55.6790364Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:55.8648969Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:55.8661146Z * DONE (ps)
2021-06-03T19:10:56.0783093Z * installing *source* package ‘praise’ ...
2021-06-03T19:10:56.0791571Z ** package ‘praise’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:56.0792669Z ** using staged installation
2021-06-03T19:10:56.0890812Z ** R
2021-06-03T19:10:56.0928342Z ** inst
2021-06-03T19:10:56.0935810Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:56.3086450Z ** help
2021-06-03T19:10:56.3175950Z *** installing help indices
2021-06-03T19:10:56.3378995Z ** building package indices
2021-06-03T19:10:56.5179737Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:56.6868771Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:56.8506539Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:56.8517862Z * DONE (praise)
2021-06-03T19:10:57.1561789Z * installing *source* package ‘pkgload’ ...
2021-06-03T19:10:57.1608576Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:57.1609782Z ** using staged installation
2021-06-03T19:10:57.1741152Z ** R
2021-06-03T19:10:57.1839010Z ** inst
2021-06-03T19:10:57.1846345Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:57.9636122Z ** help
2021-06-03T19:10:58.0110663Z *** installing help indices
2021-06-03T19:10:58.0533613Z ** building package indices
2021-06-03T19:10:58.2692186Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:10:58.6999128Z ** testing if installed package can be loaded from final location
2021-06-03T19:10:59.1340063Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:10:59.1352061Z * DONE (pkgload)
2021-06-03T19:10:59.3632624Z * installing *source* package ‘evaluate’ ...
2021-06-03T19:10:59.3650508Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked
2021-06-03T19:10:59.3652161Z ** using staged installation
2021-06-03T19:10:59.3784574Z ** R
2021-06-03T19:10:59.3835299Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:10:59.8392390Z ** help
2021-06-03T19:10:59.8662254Z *** installing help indices
2021-06-03T19:10:59.8962681Z ** building package indices
2021-06-03T19:11:00.0901143Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:11:00.2572162Z ** testing if installed package can be loaded from final location
2021-06-03T19:11:00.4267289Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:11:00.4274636Z * DONE (evaluate)
2021-06-03T19:11:00.6294368Z * installing *source* package ‘ellipsis’ ...
2021-06-03T19:11:00.6304441Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked
2021-06-03T19:11:00.6305499Z ** using staged installation
2021-06-03T19:11:00.6441145Z ** libs
2021-06-03T19:11:00.6490467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c dots.c -o dots.o
2021-06-03T19:11:00.7196680Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:11:00.7638316Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:11:00.7855699Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs
2021-06-03T19:11:00.7867900Z ** R
2021-06-03T19:11:00.7900044Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:11:01.0477361Z ** help
2021-06-03T19:11:01.0654011Z *** installing help indices
2021-06-03T19:11:01.0841380Z ** building package indices
2021-06-03T19:11:01.2676911Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:11:01.4522861Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:11:01.4700470Z ** testing if installed package can be loaded from final location
2021-06-03T19:11:01.6524898Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:11:01.6530208Z * DONE (ellipsis)
2021-06-03T19:11:01.9058033Z * installing *source* package ‘digest’ ...
2021-06-03T19:11:01.9088382Z ** package ‘digest’ successfully unpacked and MD5 sums checked
2021-06-03T19:11:01.9089599Z ** using staged installation
2021-06-03T19:11:01.9193190Z ** libs
2021-06-03T19:11:01.9250324Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c SpookyV2.cpp -o SpookyV2.o
2021-06-03T19:11:02.7028707Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c aes.c -o aes.o
2021-06-03T19:11:02.7031007Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c blake3.c -o blake3.o
2021-06-03T19:11:02.8857457Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c blake3_dispatch.c -o blake3_dispatch.o
2021-06-03T19:11:03.1026760Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c blake3_portable.c -o blake3_portable.o
2021-06-03T19:11:03.6177669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c crc32.c -o crc32.o
2021-06-03T19:11:03.6899486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c digest.c -o digest.o
2021-06-03T19:11:03.8932756Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c digest2int.c -o digest2int.o
2021-06-03T19:11:03.9465839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:11:03.9683230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c md5.c -o md5.o
2021-06-03T19:11:04.1020556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c pmurhash.c -o pmurhash.o
2021-06-03T19:11:04.1509563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c raes.c -o raes.o
2021-06-03T19:11:04.2194734Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sha1.c -o sha1.o
2021-06-03T19:11:04.5008004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sha2.c -o sha2.o
2021-06-03T19:11:04.6094599Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sha256.c -o sha256.o
2021-06-03T19:11:05.1465678Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c spooky_serialize.cpp -o spooky_serialize.o
2021-06-03T19:11:05.2552837Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c xxhash.c -o xxhash.o
2021-06-03T19:11:05.4896173Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:11:05.5288175Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs
2021-06-03T19:11:05.5307575Z ** R
2021-06-03T19:11:05.5363364Z ** demo
2021-06-03T19:11:05.5368862Z ** inst
2021-06-03T19:11:05.5385962Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:11:06.0414611Z ** help
2021-06-03T19:11:06.0780416Z *** installing help indices
2021-06-03T19:11:06.1034311Z ** building package indices
2021-06-03T19:11:06.2934424Z ** installing vignettes
2021-06-03T19:11:06.2988499Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:11:06.4722269Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:11:06.4898180Z ** testing if installed package can be loaded from final location
2021-06-03T19:11:06.6670943Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:11:06.6680795Z * DONE (digest)
2021-06-03T19:11:06.8761242Z * installing *source* package ‘brio’ ...
2021-06-03T19:11:06.8774217Z ** package ‘brio’ successfully unpacked and MD5 sums checked
2021-06-03T19:11:06.8775271Z ** using staged installation
2021-06-03T19:11:06.8939656Z ** libs
2021-06-03T19:11:06.8987483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c brio.c -o brio.o
2021-06-03T19:11:06.9344016Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c file_line_endings.c -o file_line_endings.o
2021-06-03T19:11:06.9801177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:11:07.0209939Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c read_file.c -o read_file.o
2021-06-03T19:11:07.0697055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c read_file_raw.c -o read_file_raw.o
2021-06-03T19:11:07.1194430Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c read_lines.c -o read_lines.o
2021-06-03T19:11:07.1966633Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c write_file.c -o write_file.o
2021-06-03T19:11:07.2412037Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c write_lines.c -o write_lines.o
2021-06-03T19:11:07.2953081Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:11:07.3208285Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs
2021-06-03T19:11:07.3209564Z ** R
2021-06-03T19:11:07.3220124Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:11:07.5413700Z ** help
2021-06-03T19:11:07.5603023Z *** installing help indices
2021-06-03T19:11:07.5792358Z ** building package indices
2021-06-03T19:11:07.7647860Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:11:07.9344695Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:11:07.9517594Z ** testing if installed package can be loaded from final location
2021-06-03T19:11:08.1173946Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:11:08.1178935Z * DONE (brio)
2021-06-03T19:11:08.3949964Z * installing *source* package ‘xml2’ ...
2021-06-03T19:11:08.3988531Z ** package ‘xml2’ successfully unpacked and MD5 sums checked
2021-06-03T19:11:08.3990224Z ** using staged installation
2021-06-03T19:11:08.4070181Z Found pkg-config cflags and libs!
2021-06-03T19:11:08.4878314Z Using PKG_CFLAGS=-I/usr/include/libxml2
2021-06-03T19:11:08.4879417Z Using PKG_LIBS=-lxml2
2021-06-03T19:11:08.5368768Z ** libs
2021-06-03T19:11:08.5416762Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c connection.cpp -o connection.o
2021-06-03T19:11:09.0040073Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:11:09.0479585Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_doc.cpp -o xml2_doc.o
2021-06-03T19:11:09.5618913Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_init.cpp -o xml2_init.o
2021-06-03T19:11:09.9583671Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_namespace.cpp -o xml2_namespace.o
2021-06-03T19:11:10.6110096Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_node.cpp -o xml2_node.o
2021-06-03T19:11:12.3384728Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_output.cpp -o xml2_output.o
2021-06-03T19:11:12.8353565Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_schema.cpp -o xml2_schema.o
2021-06-03T19:11:13.3756800Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_url.cpp -o xml2_url.o
2021-06-03T19:11:13.8143673Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c xml2_xpath.cpp -o xml2_xpath.o
2021-06-03T19:11:14.2218401Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:11:14.3043892Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs
2021-06-03T19:11:14.3070258Z ** R
2021-06-03T19:11:14.3174828Z ** inst
2021-06-03T19:11:14.3187428Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:11:15.2020166Z ** help
2021-06-03T19:11:15.2919401Z *** installing help indices
2021-06-03T19:11:15.3407271Z ** building package indices
2021-06-03T19:11:15.5646561Z ** installing vignettes
2021-06-03T19:11:15.5708992Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:11:15.7520155Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:11:15.7710105Z ** testing if installed package can be loaded from final location
2021-06-03T19:11:15.9631386Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:11:15.9644557Z * DONE (xml2)
2021-06-03T19:11:16.2315397Z * installing *source* package ‘xfun’ ...
2021-06-03T19:11:16.2348395Z ** package ‘xfun’ successfully unpacked and MD5 sums checked
2021-06-03T19:11:16.2349629Z ** using staged installation
2021-06-03T19:11:16.2520813Z ** libs
2021-06-03T19:11:16.2572601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c base64.c -o base64.o
2021-06-03T19:11:16.3533761Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:11:16.3983002Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:11:16.4314710Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs
2021-06-03T19:11:16.4325127Z ** R
2021-06-03T19:11:16.4465788Z ** inst
2021-06-03T19:11:16.4477578Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:11:17.6948466Z ** help
2021-06-03T19:11:17.8337968Z *** installing help indices
2021-06-03T19:11:17.9299262Z ** building package indices
2021-06-03T19:11:18.1966590Z ** installing vignettes
2021-06-03T19:11:18.2002247Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:11:18.3734163Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:11:18.3905248Z ** testing if installed package can be loaded from final location
2021-06-03T19:11:19.2059340Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:11:19.2068423Z * DONE (xfun)
2021-06-03T19:11:20.9425537Z * installing *source* package ‘stringi’ ...
2021-06-03T19:11:21.0520801Z ** package ‘stringi’ successfully unpacked and MD5 sums checked
2021-06-03T19:11:21.0522757Z ** using staged installation
2021-06-03T19:11:21.1659740Z checking for R_HOME... /opt/R/devel/lib/R
2021-06-03T19:11:21.1660836Z checking for R... /opt/R/devel/lib/R/bin/R
2021-06-03T19:11:21.3152676Z checking for endianness... little
2021-06-03T19:11:21.4665239Z checking for R >= 3.1.0 for C++11 use... yes
2021-06-03T19:11:21.6179391Z checking for R < 3.4.0 for CXX1X flag use... no
2021-06-03T19:11:21.6184016Z checking for cat... /usr/bin/cat
2021-06-03T19:11:21.8323579Z checking for local ICUDT_DIR... icu69/data
2021-06-03T19:11:21.8324674Z checking for gcc... gcc
2021-06-03T19:11:21.8879807Z checking whether the C compiler works... yes
2021-06-03T19:11:21.8881187Z checking for C compiler default output file name... a.out
2021-06-03T19:11:21.9229977Z checking for suffix of executables... 
2021-06-03T19:11:21.9663179Z checking whether we are cross compiling... no
2021-06-03T19:11:21.9884813Z checking for suffix of object files... o
2021-06-03T19:11:22.0084691Z checking whether we are using the GNU C compiler... yes
2021-06-03T19:11:22.0283864Z checking whether gcc accepts -g... yes
2021-06-03T19:11:22.0620293Z checking for gcc option to accept ISO C89... none needed
2021-06-03T19:11:22.0816792Z checking how to run the C preprocessor... gcc -E
2021-06-03T19:11:22.1031329Z checking for grep that handles long lines and -e... /usr/bin/grep
2021-06-03T19:11:22.1047509Z checking for egrep... /usr/bin/grep -E
2021-06-03T19:11:22.2039150Z checking for ANSI C header files... yes
2021-06-03T19:11:22.2310277Z checking for sys/types.h... yes
2021-06-03T19:11:22.2618828Z checking for sys/stat.h... yes
2021-06-03T19:11:22.2931957Z checking for stdlib.h... yes
2021-06-03T19:11:22.3257138Z checking for string.h... yes
2021-06-03T19:11:22.3582223Z checking for memory.h... yes
2021-06-03T19:11:22.3903207Z checking for strings.h... yes
2021-06-03T19:11:22.4240148Z checking for inttypes.h... yes
2021-06-03T19:11:22.4575914Z checking for stdint.h... yes
2021-06-03T19:11:22.4941835Z checking for unistd.h... yes
2021-06-03T19:11:22.5327454Z checking elf.h usability... yes
2021-06-03T19:11:22.5429434Z checking elf.h presence... yes
2021-06-03T19:11:22.5430388Z checking for elf.h... yes
2021-06-03T19:11:22.5850223Z checking whether we are using the GNU C++ compiler... yes
2021-06-03T19:11:22.6061077Z checking whether g++ -std=gnu++11 accepts -g... yes
2021-06-03T19:11:22.9016435Z checking whether the C++ compiler supports the long long type... yes
2021-06-03T19:11:22.9255176Z checking whether the compiler implements namespaces... yes
2021-06-03T19:11:23.0495454Z checking whether the compiler supports Standard Template Library... yes
2021-06-03T19:11:23.5474374Z checking whether std::map is available... yes
2021-06-03T19:11:23.5495008Z checking for pkg-config... /usr/bin/pkg-config
2021-06-03T19:11:23.5542302Z checking with pkg-config for the system ICU4C... 66.1
2021-06-03T19:11:23.5564188Z checking for ICU4C >= 55... yes
2021-06-03T19:11:23.5628235Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done
2021-06-03T19:11:23.8313676Z checking whether an ICU4C-based project can be built... yes
2021-06-03T19:11:23.8869022Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes
2021-06-03T19:11:24.1492397Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes
2021-06-03T19:11:24.7379249Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes
2021-06-03T19:11:25.2956862Z checking the capabilities of the ICU data library (ucol)... yes
2021-06-03T19:11:25.3298045Z configure: creating ./config.status
2021-06-03T19:11:25.4064333Z config.status: creating src/Makevars
2021-06-03T19:11:25.4237139Z config.status: creating src/uconfig_local.h
2021-06-03T19:11:25.4399079Z config.status: creating src/install.libs.R
2021-06-03T19:11:25.4570091Z 
2021-06-03T19:11:25.4571075Z *** stringi configure summary:
2021-06-03T19:11:25.4571709Z     ICU_FOUND=1
2021-06-03T19:11:25.4572353Z     STRINGI_CXXSTD=CXX_STD=CXX11
2021-06-03T19:11:25.4573487Z     STRINGI_CFLAGS=   -fpic
2021-06-03T19:11:25.4574504Z     STRINGI_CPPFLAGS=-I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H
2021-06-03T19:11:25.4575449Z     STRINGI_CXXFLAGS=   -fpic
2021-06-03T19:11:25.4576395Z     STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu  
2021-06-03T19:11:25.4577372Z     STRINGI_LIBS=-licui18n -licuuc -licudata  
2021-06-03T19:11:25.4577982Z 
2021-06-03T19:11:25.4578793Z *** Compiler settings used:
2021-06-03T19:11:25.4579250Z     CC=gcc
2021-06-03T19:11:25.4580030Z     LD=g++ -std=gnu++14
2021-06-03T19:11:25.4580648Z     CFLAGS=-g -O2 -fpic  
2021-06-03T19:11:25.4581389Z     CPPFLAGS=-I/usr/local/include   -UDEBUG -DNDEBUG
2021-06-03T19:11:25.4582039Z     CXX=g++ -std=gnu++11
2021-06-03T19:11:25.4582615Z     CXXFLAGS=-g -O2 -fpic  
2021-06-03T19:11:25.4583022Z     LDFLAGS=  
2021-06-03T19:11:25.4583380Z     LIBS=  
2021-06-03T19:11:25.4583606Z 
2021-06-03T19:11:25.4922917Z ** libs
2021-06-03T19:11:25.5007306Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_brkiter.cpp -o stri_brkiter.o
2021-06-03T19:11:26.1176742Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_collator.cpp -o stri_collator.o
2021-06-03T19:11:26.7099746Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_common.cpp -o stri_common.o
2021-06-03T19:11:27.3288579Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_compare.cpp -o stri_compare.o
2021-06-03T19:11:28.0133609Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_base.cpp -o stri_container_base.o
2021-06-03T19:11:28.4928853Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o
2021-06-03T19:11:29.2847864Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_listint.cpp -o stri_container_listint.o
2021-06-03T19:11:29.8066273Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_listraw.cpp -o stri_container_listraw.o
2021-06-03T19:11:30.3668017Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_listutf8.cpp -o stri_container_listutf8.o
2021-06-03T19:11:30.8878755Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_regex.cpp -o stri_container_regex.o
2021-06-03T19:11:31.4942348Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_usearch.cpp -o stri_container_usearch.o
2021-06-03T19:11:32.0985455Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_utf16.cpp -o stri_container_utf16.o
2021-06-03T19:11:32.7837445Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_utf8.cpp -o stri_container_utf8.o
2021-06-03T19:11:34.2100983Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o
2021-06-03T19:11:34.2111359Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o
2021-06-03T19:11:34.8840040Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_encoding_detection.cpp -o stri_encoding_detection.o
2021-06-03T19:11:36.3692864Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_encoding_management.cpp -o stri_encoding_management.o
2021-06-03T19:11:37.0157312Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_escape.cpp -o stri_escape.o
2021-06-03T19:11:37.6448589Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_exception.cpp -o stri_exception.o
2021-06-03T19:11:38.1434533Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_ICU_settings.cpp -o stri_ICU_settings.o
2021-06-03T19:11:38.6401485Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_join.cpp -o stri_join.o
2021-06-03T19:11:39.5246766Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_length.cpp -o stri_length.o
2021-06-03T19:11:40.1620740Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_pad.cpp -o stri_pad.o
2021-06-03T19:11:40.7534937Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_prepare_arg.cpp -o stri_prepare_arg.o
2021-06-03T19:11:41.4986925Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_random.cpp -o stri_random.o
2021-06-03T19:11:42.2252886Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_reverse.cpp -o stri_reverse.o
2021-06-03T19:11:42.7672031Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_count.cpp -o stri_search_class_count.o
2021-06-03T19:11:43.3705259Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_detect.cpp -o stri_search_class_detect.o
2021-06-03T19:11:43.9769930Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_extract.cpp -o stri_search_class_extract.o
2021-06-03T19:11:44.7895815Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_locate.cpp -o stri_search_class_locate.o
2021-06-03T19:11:45.5856992Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_replace.cpp -o stri_search_class_replace.o
2021-06-03T19:11:46.5267379Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_split.cpp -o stri_search_class_split.o
2021-06-03T19:11:47.2975815Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o
2021-06-03T19:11:47.9839723Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_subset.cpp -o stri_search_class_subset.o
2021-06-03T19:11:48.7044059Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_class_trim.cpp -o stri_search_class_trim.o
2021-06-03T19:11:49.3194153Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_common.cpp -o stri_search_common.o
2021-06-03T19:11:49.9274615Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_count.cpp -o stri_search_coll_count.o
2021-06-03T19:11:50.5287129Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o
2021-06-03T19:11:51.1487363Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o
2021-06-03T19:11:51.9216027Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o
2021-06-03T19:11:52.6835671Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o
2021-06-03T19:11:53.5156942Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_split.cpp -o stri_search_coll_split.o
2021-06-03T19:11:54.3105074Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o
2021-06-03T19:11:55.0106901Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o
2021-06-03T19:11:55.7174086Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o
2021-06-03T19:11:56.2391320Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o
2021-06-03T19:11:57.2161303Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o
2021-06-03T19:11:57.5727123Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o
2021-06-03T19:11:58.2371527Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o
2021-06-03T19:11:58.7817371Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o
2021-06-03T19:11:59.3170137Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o
2021-06-03T19:12:00.0244645Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o
2021-06-03T19:12:00.7251474Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o
2021-06-03T19:12:01.5012843Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o
2021-06-03T19:12:02.2357315Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o
2021-06-03T19:12:02.9434636Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o
2021-06-03T19:12:03.5803111Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_in.cpp -o stri_search_in.o
2021-06-03T19:12:03.5951121Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_other_split.cpp -o stri_search_other_split.o
2021-06-03T19:12:04.3816454Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_count.cpp -o stri_search_regex_count.o
2021-06-03T19:12:04.9220345Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o
2021-06-03T19:12:05.4652456Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o
2021-06-03T19:12:06.2007190Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o
2021-06-03T19:12:06.9136315Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_match.cpp -o stri_search_regex_match.o
2021-06-03T19:12:07.7862430Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o
2021-06-03T19:12:08.4320183Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_split.cpp -o stri_search_regex_split.o
2021-06-03T19:12:09.1804160Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o
2021-06-03T19:12:09.8104193Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_sort.cpp -o stri_sort.o
2021-06-03T19:12:11.2844205Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_stats.cpp -o stri_stats.o
2021-06-03T19:12:12.7208464Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_stringi.cpp -o stri_stringi.o
2021-06-03T19:12:12.7210648Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_sub.cpp -o stri_sub.o
2021-06-03T19:12:13.2014539Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_test.cpp -o stri_test.o
2021-06-03T19:12:13.7134218Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_time_zone.cpp -o stri_time_zone.o
2021-06-03T19:12:14.2659562Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_time_calendar.cpp -o stri_time_calendar.o
2021-06-03T19:12:14.9772202Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_time_symbols.cpp -o stri_time_symbols.o
2021-06-03T19:12:15.6373471Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_time_format.cpp -o stri_time_format.o
2021-06-03T19:12:16.3467874Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_trans_casemap.cpp -o stri_trans_casemap.o
2021-06-03T19:12:16.9899896Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_trans_other.cpp -o stri_trans_other.o
2021-06-03T19:12:17.6634487Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_trans_normalization.cpp -o stri_trans_normalization.o
2021-06-03T19:12:18.2551018Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o
2021-06-03T19:12:18.8139942Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_ucnv.cpp -o stri_ucnv.o
2021-06-03T19:12:19.3933641Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_uloc.cpp -o stri_uloc.o
2021-06-03T19:12:19.8890329Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_utils.cpp -o stri_utils.o
2021-06-03T19:12:20.4272914Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I.    -UDEBUG -DNDEBUG -DU_HAVE_ELF_H  -I/usr/local/include  -fpic -fpic  -g -O2  -c stri_wrap.cpp -o stri_wrap.o
2021-06-03T19:12:21.6943317Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:12:21.8913229Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi
2021-06-03T19:12:21.9609378Z ** R
2021-06-03T19:12:21.9939121Z ** inst
2021-06-03T19:12:21.9946467Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:12:22.9886488Z ** help
2021-06-03T19:12:23.4128548Z *** installing help indices
2021-06-03T19:12:23.6126908Z ** building package indices
2021-06-03T19:12:23.9902095Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:12:24.1660044Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:12:24.1869565Z ** testing if installed package can be loaded from final location
2021-06-03T19:12:24.3750085Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:12:24.3763403Z * DONE (stringi)
2021-06-03T19:12:25.2789234Z * installing *source* package ‘Rcpp’ ...
2021-06-03T19:12:25.3131419Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked
2021-06-03T19:12:25.3132848Z ** using staged installation
2021-06-03T19:12:25.3235589Z ** libs
2021-06-03T19:12:25.3284002Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/  -I/usr/local/include   -fpic  -g -O2  -c api.cpp -o api.o
2021-06-03T19:12:28.1779432Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/  -I/usr/local/include   -fpic  -g -O2  -c attributes.cpp -o attributes.o
2021-06-03T19:12:42.6524328Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/  -I/usr/local/include   -fpic  -g -O2  -c barrier.cpp -o barrier.o
2021-06-03T19:12:42.8422905Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/  -I/usr/local/include   -fpic  -g -O2  -c date.cpp -o date.o
2021-06-03T19:12:45.9444742Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/  -I/usr/local/include   -fpic  -g -O2  -c module.cpp -o module.o
2021-06-03T19:12:51.9244652Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/  -I/usr/local/include   -fpic  -g -O2  -c rcpp_init.cpp -o rcpp_init.o
2021-06-03T19:12:54.6726207Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:12:54.8343201Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs
2021-06-03T19:12:54.8454572Z ** R
2021-06-03T19:12:54.8587374Z ** inst
2021-06-03T19:12:54.8961568Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:12:56.4896591Z ** help
2021-06-03T19:12:56.5797523Z *** installing help indices
2021-06-03T19:12:56.6406195Z ** building package indices
2021-06-03T19:12:56.8711260Z ** installing vignettes
2021-06-03T19:12:56.8802543Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:12:57.1329693Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:12:57.1550190Z ** testing if installed package can be loaded from final location
2021-06-03T19:12:57.4338354Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:12:57.4421179Z * DONE (Rcpp)
2021-06-03T19:12:57.7184463Z * installing *source* package ‘commonmark’ ...
2021-06-03T19:12:57.7221686Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked
2021-06-03T19:12:57.7222840Z ** using staged installation
2021-06-03T19:12:57.7334762Z ** libs
2021-06-03T19:12:57.7412636Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a
2021-06-03T19:12:57.7447237Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions.c -o extensions.o
2021-06-03T19:12:57.7885262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:12:57.8256518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c wrapper.c -o wrapper.o
2021-06-03T19:12:57.8855874Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/cmark.c -o cmark/cmark.o
2021-06-03T19:12:57.9303682Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/node.c -o cmark/node.o
2021-06-03T19:12:58.1943261Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/iterator.c -o cmark/iterator.o
2021-06-03T19:12:58.2785189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/blocks.c -o cmark/blocks.o
2021-06-03T19:12:58.6910825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/inlines.c -o cmark/inlines.o
2021-06-03T19:12:59.3728332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/scanners.c -o cmark/scanners.o
2021-06-03T19:13:00.9951520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/utf8.c -o cmark/utf8.o
2021-06-03T19:13:03.9320757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/buffer.c -o cmark/buffer.o
2021-06-03T19:13:04.0499221Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/references.c -o cmark/references.o
2021-06-03T19:13:04.0941138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/render.c -o cmark/render.o
2021-06-03T19:13:04.1880126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/man.c -o cmark/man.o
2021-06-03T19:13:04.2691413Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/xml.c -o cmark/xml.o
2021-06-03T19:13:04.3474230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/html.c -o cmark/html.o
2021-06-03T19:13:04.5251351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/commonmark.c -o cmark/commonmark.o
2021-06-03T19:13:04.7095744Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/latex.c -o cmark/latex.o
2021-06-03T19:13:04.8289036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o
2021-06-03T19:13:04.8701307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o
2021-06-03T19:13:04.9110982Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o
2021-06-03T19:13:05.0104841Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o
2021-06-03T19:13:05.0384075Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/arena.c -o cmark/arena.o
2021-06-03T19:13:05.0956122Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/linked_list.c -o cmark/linked_list.o
2021-06-03T19:13:05.1348631Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/plugin.c -o cmark/plugin.o
2021-06-03T19:13:05.1703558Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/registry.c -o cmark/registry.o
2021-06-03T19:13:05.2169490Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/syntax_extension.c -o cmark/syntax_extension.o
2021-06-03T19:13:05.2802914Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/plaintext.c -o cmark/plaintext.o
2021-06-03T19:13:05.3715139Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/footnotes.c -o cmark/footnotes.o
2021-06-03T19:13:05.4135991Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cmark/map.c -o cmark/map.o
2021-06-03T19:13:05.4824820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions/autolink.c -o extensions/autolink.o
2021-06-03T19:13:05.6410332Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions/core-extensions.c -o extensions/core-extensions.o
2021-06-03T19:13:05.6701146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions/ext_scanners.c -o extensions/ext_scanners.o
2021-06-03T19:13:05.7998523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions/strikethrough.c -o extensions/strikethrough.o
2021-06-03T19:13:05.8740799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions/table.c -o extensions/table.o
2021-06-03T19:13:06.1274509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS  -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c extensions/tagfilter.c -o extensions/tagfilter.o
2021-06-03T19:13:06.1767874Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o
2021-06-03T19:13:06.1898224Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:13:06.2312241Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs
2021-06-03T19:13:06.2339392Z ** R
2021-06-03T19:13:06.2365304Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:06.4530066Z ** help
2021-06-03T19:13:06.4650372Z *** installing help indices
2021-06-03T19:13:06.4802574Z ** building package indices
2021-06-03T19:13:06.6589049Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:06.8291260Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:13:06.8470762Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:07.0090992Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:07.0095999Z * DONE (commonmark)
2021-06-03T19:13:07.2418864Z * installing *source* package ‘brew’ ...
2021-06-03T19:13:07.2421020Z ** using staged installation
2021-06-03T19:13:07.2498342Z ** R
2021-06-03T19:13:07.2525487Z ** inst
2021-06-03T19:13:07.2549293Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:07.5746774Z ** help
2021-06-03T19:13:07.5884323Z *** installing help indices
2021-06-03T19:13:07.6044565Z ** building package indices
2021-06-03T19:13:07.7849381Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:07.9519017Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:08.1186077Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:08.1192940Z * DONE (brew)
2021-06-03T19:13:08.3329538Z * installing *source* package ‘sessioninfo’ ...
2021-06-03T19:13:08.3344766Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:08.3346013Z ** using staged installation
2021-06-03T19:13:08.3502060Z ** R
2021-06-03T19:13:08.3539708Z ** inst
2021-06-03T19:13:08.3545937Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:08.7606449Z ** help
2021-06-03T19:13:08.7752486Z *** installing help indices
2021-06-03T19:13:08.7922428Z ** building package indices
2021-06-03T19:13:08.9744818Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:09.1887593Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:09.4002381Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:09.4008934Z * DONE (sessioninfo)
2021-06-03T19:13:09.6009924Z * installing *source* package ‘prettyunits’ ...
2021-06-03T19:13:09.6020167Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:09.6021251Z ** using staged installation
2021-06-03T19:13:09.6123517Z ** R
2021-06-03T19:13:09.6160963Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:09.9086328Z ** help
2021-06-03T19:13:09.9303595Z *** installing help indices
2021-06-03T19:13:09.9493301Z ** building package indices
2021-06-03T19:13:10.1346400Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:10.3017099Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:10.4670945Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:10.4676815Z * DONE (prettyunits)
2021-06-03T19:13:10.9637181Z * installing *source* package ‘vctrs’ ...
2021-06-03T19:13:10.9776221Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:10.9778794Z ** using staged installation
2021-06-03T19:13:10.9945576Z ** libs
2021-06-03T19:13:11.0014807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c altrep-rle.c -o altrep-rle.o
2021-06-03T19:13:11.1095572Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c arg-counter.c -o arg-counter.o
2021-06-03T19:13:11.1893724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c arg.c -o arg.o
2021-06-03T19:13:11.2680718Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c bind.c -o bind.o
2021-06-03T19:13:11.4933710Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c c-unchop.c -o c-unchop.o
2021-06-03T19:13:11.6036362Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c c.c -o c.o
2021-06-03T19:13:11.7336718Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c callables.c -o callables.o
2021-06-03T19:13:11.7941526Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cast-bare.c -o cast-bare.o
2021-06-03T19:13:11.8951289Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cast-dispatch.c -o cast-dispatch.o
2021-06-03T19:13:11.9667133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c cast.c -o cast.o
2021-06-03T19:13:12.0932854Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c compare.c -o compare.o
2021-06-03T19:13:12.2835285Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c complete.c -o complete.o
2021-06-03T19:13:12.3971070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c conditions.c -o conditions.o
2021-06-03T19:13:12.4789467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c dictionary.c -o dictionary.o
2021-06-03T19:13:12.7125086Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c dim.c -o dim.o
2021-06-03T19:13:12.7695689Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c equal.c -o equal.o
2021-06-03T19:13:13.1313532Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c fields.c -o fields.o
2021-06-03T19:13:13.2158927Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c fill.c -o fill.o
2021-06-03T19:13:13.3323438Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c group.c -o group.o
2021-06-03T19:13:13.4446284Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c growable.c -o growable.o
2021-06-03T19:13:13.4962516Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c hash.c -o hash.o
2021-06-03T19:13:13.7113316Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:13:13.7681579Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c names.c -o names.o
2021-06-03T19:13:14.0585514Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c order-groups.c -o order-groups.o
2021-06-03T19:13:14.1270131Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c order-radix.c -o order-radix.o
2021-06-03T19:13:14.7951674Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c order-sortedness.c -o order-sortedness.o
2021-06-03T19:13:14.9373881Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c order-transform.c -o order-transform.o
2021-06-03T19:13:15.0037535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c order-truelength.c -o order-truelength.o
2021-06-03T19:13:15.0713523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c poly-op.c -o poly-op.o
2021-06-03T19:13:15.2204925Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c proxy-restore.c -o proxy-restore.o
2021-06-03T19:13:15.3223869Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c proxy.c -o proxy.o
2021-06-03T19:13:15.4418270Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c ptype2-dispatch.c -o ptype2-dispatch.o
2021-06-03T19:13:15.5438915Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c rep.c -o rep.o
2021-06-03T19:13:15.6676398Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c runs.c -o runs.o
2021-06-03T19:13:15.8956615Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c shape.c -o shape.o
2021-06-03T19:13:15.9866961Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c size-common.c -o size-common.o
2021-06-03T19:13:16.0633298Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c size.c -o size.o
2021-06-03T19:13:16.1686960Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c slice-array.c -o slice-array.o
2021-06-03T19:13:16.5923630Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c slice-assign-array.c -o slice-assign-array.o
2021-06-03T19:13:16.9279303Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c slice-assign.c -o slice-assign.o
2021-06-03T19:13:17.1531912Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c slice-chop.c -o slice-chop.o
2021-06-03T19:13:17.3097245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c slice.c -o slice.o
2021-06-03T19:13:17.5656004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c split.c -o split.o
2021-06-03T19:13:17.6166880Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c subscript-loc.c -o subscript-loc.o
2021-06-03T19:13:17.8001869Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c subscript.c -o subscript.o
2021-06-03T19:13:17.9349511Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c translate.c -o translate.o
2021-06-03T19:13:18.0329304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type-data-frame.c -o type-data-frame.o
2021-06-03T19:13:18.3590268Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type-date-time.c -o type-date-time.o
2021-06-03T19:13:18.5032153Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type-factor.c -o type-factor.o
2021-06-03T19:13:18.6261926Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type-info.c -o type-info.o
2021-06-03T19:13:18.7235078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type-tibble.c -o type-tibble.o
2021-06-03T19:13:18.7931395Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type.c -o type.o
2021-06-03T19:13:18.9079010Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c type2.c -o type2.o
2021-06-03T19:13:19.0302416Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c typeof2-s3.c -o typeof2-s3.o
2021-06-03T19:13:19.1457055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c typeof2.c -o typeof2.o
2021-06-03T19:13:19.2415889Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c unspecified.c -o unspecified.o
2021-06-03T19:13:19.3119007Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c utils-dispatch.c -o utils-dispatch.o
2021-06-03T19:13:19.3790753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c utils-rlang.c -o utils-rlang.o
2021-06-03T19:13:19.4296139Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:13:20.0200133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include  -fvisibility=hidden -fpic  -g -O2  -c version.c -o version.o
2021-06-03T19:13:20.0574133Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:13:20.1135414Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs
2021-06-03T19:13:20.1167620Z ** R
2021-06-03T19:13:20.1504879Z ** inst
2021-06-03T19:13:20.1524881Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:22.5998779Z ** help
2021-06-03T19:13:22.8396889Z *** installing help indices
2021-06-03T19:13:23.0199045Z *** copying figures
2021-06-03T19:13:23.0207624Z ** building package indices
2021-06-03T19:13:23.3286559Z ** installing vignettes
2021-06-03T19:13:23.3428341Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:23.5611356Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:13:23.5797611Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:23.8466509Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:23.8500434Z * DONE (vctrs)
2021-06-03T19:13:24.1218576Z * installing *source* package ‘processx’ ...
2021-06-03T19:13:24.1257466Z ** package ‘processx’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:24.1260345Z ** using staged installation
2021-06-03T19:13:24.1422686Z ** libs
2021-06-03T19:13:24.1475752Z gcc -g -O2  -L/usr/local/lib -Wall tools/px.c -o tools/px
2021-06-03T19:13:24.2776569Z gcc -g -O2  -L/usr/local/lib supervisor/supervisor.c \
2021-06-03T19:13:24.2777807Z       supervisor/utils.c -o supervisor/supervisor
2021-06-03T19:13:24.4411820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c base64.c -o base64.o
2021-06-03T19:13:24.5231658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c client.c -o client.o
2021-06-03T19:13:24.6127127Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c errors.c -o errors.o
2021-06-03T19:13:24.6689563Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o  \
2021-06-03T19:13:24.6690936Z 	 -L"/opt/R/devel/lib/R/lib" -lR
2021-06-03T19:13:24.6906010Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:13:24.7582374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c poll.c -o poll.o
2021-06-03T19:13:24.8537845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c processx-connection.c -o processx-connection.o
2021-06-03T19:13:25.1737436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c processx-vector.c -o processx-vector.o
2021-06-03T19:13:25.2579443Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c create-time.c -o create-time.o
2021-06-03T19:13:25.3644635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unix/childlist.c -o unix/childlist.o
2021-06-03T19:13:25.4547270Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unix/connection.c -o unix/connection.o
2021-06-03T19:13:25.5262507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unix/processx.c -o unix/processx.o
2021-06-03T19:13:25.8276448Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unix/sigchld.c -o unix/sigchld.o
2021-06-03T19:13:25.9199979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unix/utils.c -o unix/utils.o
2021-06-03T19:13:26.0191690Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c unix/named_pipe.c -o unix/named_pipe.o
2021-06-03T19:13:26.0725456Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c cleancall.c -o cleancall.o
2021-06-03T19:13:26.1426481Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:13:26.1691783Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx
2021-06-03T19:13:26.1726988Z ** R
2021-06-03T19:13:26.1857326Z ** inst
2021-06-03T19:13:26.1864510Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:27.6944745Z ** help
2021-06-03T19:13:27.7654299Z *** installing help indices
2021-06-03T19:13:27.8056214Z ** building package indices
2021-06-03T19:13:28.0185484Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:28.2024707Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:13:28.2276561Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:28.4333904Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:28.4350475Z * DONE (processx)
2021-06-03T19:13:28.6789835Z * installing *source* package ‘markdown’ ...
2021-06-03T19:13:28.6813295Z ** package ‘markdown’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:28.6814473Z ** using staged installation
2021-06-03T19:13:28.6956057Z ** libs
2021-06-03T19:13:28.7005222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Rbase64.c -o Rbase64.o
2021-06-03T19:13:28.7620252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Rinit.c -o Rinit.o
2021-06-03T19:13:28.8096274Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Rmarkdown.c -o Rmarkdown.o
2021-06-03T19:13:28.9706729Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c autolink.c -o autolink.o
2021-06-03T19:13:29.0713411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c buffer.c -o buffer.o
2021-06-03T19:13:29.1430493Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c houdini_href_e.c -o houdini_href_e.o
2021-06-03T19:13:29.1813461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c houdini_html_e.c -o houdini_html_e.o
2021-06-03T19:13:29.2206587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c html.c -o html.o
2021-06-03T19:13:29.4224495Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c html_smartypants.c -o html_smartypants.o
2021-06-03T19:13:29.5526584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c markdown.c -o markdown.o
2021-06-03T19:13:30.5667387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c stack.c -o stack.o
2021-06-03T19:13:30.6125286Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:13:30.6407532Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs
2021-06-03T19:13:30.6408806Z ** R
2021-06-03T19:13:30.6450587Z ** inst
2021-06-03T19:13:30.6468147Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:31.0524888Z ** help
2021-06-03T19:13:31.0864722Z *** installing help indices
2021-06-03T19:13:31.1117319Z ** building package indices
2021-06-03T19:13:31.3034507Z ** installing vignettes
2021-06-03T19:13:31.3088792Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:31.4792663Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:13:31.4968421Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:31.6657846Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:31.6667726Z * DONE (markdown)
2021-06-03T19:13:31.8708453Z * installing *source* package ‘highr’ ...
2021-06-03T19:13:31.8718309Z ** package ‘highr’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:31.8719382Z ** using staged installation
2021-06-03T19:13:31.8862370Z ** R
2021-06-03T19:13:31.8896038Z ** inst
2021-06-03T19:13:31.8963000Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:32.2040388Z ** help
2021-06-03T19:13:32.2157718Z *** installing help indices
2021-06-03T19:13:32.2304824Z ** building package indices
2021-06-03T19:13:32.4126491Z ** installing vignettes
2021-06-03T19:13:32.4127648Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:32.5795674Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:32.7480948Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:32.7482283Z * DONE (highr)
2021-06-03T19:13:33.0100691Z * installing *source* package ‘stringr’ ...
2021-06-03T19:13:33.0133482Z ** package ‘stringr’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:33.0134677Z ** using staged installation
2021-06-03T19:13:33.0293742Z ** R
2021-06-03T19:13:33.0367335Z ** data
2021-06-03T19:13:33.0371898Z *** moving datasets to lazyload DB
2021-06-03T19:13:33.0536293Z ** inst
2021-06-03T19:13:33.0549100Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:33.5326448Z ** help
2021-06-03T19:13:33.6047749Z *** installing help indices
2021-06-03T19:13:33.6570695Z *** copying figures
2021-06-03T19:13:33.6573102Z ** building package indices
2021-06-03T19:13:33.8804304Z ** installing vignettes
2021-06-03T19:13:33.8864641Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:34.0648525Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:34.2488061Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:34.2497797Z * DONE (stringr)
2021-06-03T19:13:34.4551550Z * installing *source* package ‘rversions’ ...
2021-06-03T19:13:34.4562248Z ** package ‘rversions’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:34.4563316Z ** using staged installation
2021-06-03T19:13:34.4698450Z ** R
2021-06-03T19:13:34.4735129Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:34.7806392Z ** help
2021-06-03T19:13:34.7969328Z *** installing help indices
2021-06-03T19:13:34.8163728Z *** copying figures
2021-06-03T19:13:34.8166907Z ** building package indices
2021-06-03T19:13:35.0017688Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:35.1907661Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:35.3810041Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:35.3815514Z * DONE (rversions)
2021-06-03T19:13:35.7683720Z * installing *source* package ‘pillar’ ...
2021-06-03T19:13:35.7780768Z ** package ‘pillar’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:35.7783279Z ** using staged installation
2021-06-03T19:13:35.7956276Z ** R
2021-06-03T19:13:35.8127571Z ** inst
2021-06-03T19:13:35.8160036Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:37.4201369Z ** help
2021-06-03T19:13:37.4989060Z *** installing help indices
2021-06-03T19:13:37.5563659Z *** copying figures
2021-06-03T19:13:37.5567793Z ** building package indices
2021-06-03T19:13:37.7846595Z ** installing vignettes
2021-06-03T19:13:37.7911926Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:38.0593156Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:38.3597145Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:38.3618320Z * DONE (pillar)
2021-06-03T19:13:38.6141592Z * installing *source* package ‘callr’ ...
2021-06-03T19:13:38.6169054Z ** package ‘callr’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:38.6170121Z ** using staged installation
2021-06-03T19:13:38.6301585Z ** R
2021-06-03T19:13:38.6434733Z ** inst
2021-06-03T19:13:38.6441933Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:41.6080743Z ** help
2021-06-03T19:13:41.7221432Z *** installing help indices
2021-06-03T19:13:41.7912089Z ** building package indices
2021-06-03T19:13:42.0267693Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:42.2161460Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:42.4635405Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:42.4668662Z * DONE (callr)
2021-06-03T19:13:42.9053808Z * installing *source* package ‘knitr’ ...
2021-06-03T19:13:42.9160379Z ** package ‘knitr’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:42.9161520Z ** using staged installation
2021-06-03T19:13:42.9491432Z ** R
2021-06-03T19:13:42.9862175Z ** demo
2021-06-03T19:13:42.9868903Z ** inst
2021-06-03T19:13:42.9966816Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:46.8400841Z ** help
2021-06-03T19:13:47.0164613Z *** installing help indices
2021-06-03T19:13:47.1336060Z ** building package indices
2021-06-03T19:13:47.4126548Z ** installing vignettes
2021-06-03T19:13:47.4212757Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:47.6057688Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:47.8792157Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:47.8848332Z * DONE (knitr)
2021-06-03T19:13:48.0855024Z * installing *source* package ‘xopen’ ...
2021-06-03T19:13:48.0863249Z ** package ‘xopen’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:48.0864474Z ** using staged installation
2021-06-03T19:13:48.1004381Z ** R
2021-06-03T19:13:48.1027928Z ** inst
2021-06-03T19:13:48.1034861Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:48.3328374Z ** help
2021-06-03T19:13:48.3491486Z *** installing help indices
2021-06-03T19:13:48.3632928Z ** building package indices
2021-06-03T19:13:48.5410188Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:48.7077003Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:48.8711617Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:48.8721921Z * DONE (xopen)
2021-06-03T19:13:49.2574727Z * installing *source* package ‘tibble’ ...
2021-06-03T19:13:49.2667315Z ** package ‘tibble’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:49.2668372Z ** using staged installation
2021-06-03T19:13:49.2860604Z ** libs
2021-06-03T19:13:49.2907941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c attributes.c -o attributes.o
2021-06-03T19:13:49.3354442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c coerce.c -o coerce.o
2021-06-03T19:13:49.3965220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:13:49.4318432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c matrixToDataFrame.c -o matrixToDataFrame.o
2021-06-03T19:13:49.5241161Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:13:49.5488218Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs
2021-06-03T19:13:49.5489394Z ** R
2021-06-03T19:13:49.5626041Z ** inst
2021-06-03T19:13:49.5654624Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:51.2133078Z ** help
2021-06-03T19:13:51.2820510Z *** installing help indices
2021-06-03T19:13:51.3286649Z *** copying figures
2021-06-03T19:13:51.3291345Z ** building package indices
2021-06-03T19:13:51.5451784Z ** installing vignettes
2021-06-03T19:13:51.5523293Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:51.8806596Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:13:51.8977921Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:52.2437575Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:52.2457904Z * DONE (tibble)
2021-06-03T19:13:52.4844144Z * installing *source* package ‘pkgbuild’ ...
2021-06-03T19:13:52.4862676Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:52.4863906Z ** using staged installation
2021-06-03T19:13:52.5000719Z ** R
2021-06-03T19:13:52.5077693Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:13:53.6122307Z ** help
2021-06-03T19:13:53.6467086Z *** installing help indices
2021-06-03T19:13:53.6794434Z ** building package indices
2021-06-03T19:13:53.8784085Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:13:54.1185527Z ** testing if installed package can be loaded from final location
2021-06-03T19:13:54.3725664Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:13:54.3738841Z * DONE (pkgbuild)
2021-06-03T19:13:54.7383233Z * installing *source* package ‘roxygen2’ ...
2021-06-03T19:13:54.7453309Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked
2021-06-03T19:13:54.7454382Z ** using staged installation
2021-06-03T19:13:54.7632734Z ** libs
2021-06-03T19:13:54.7683328Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c RcppExports.cpp -o RcppExports.o
2021-06-03T19:13:59.0252461Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c escapeExamples.cpp -o escapeExamples.o
2021-06-03T19:14:01.7968251Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c isComplete.cpp -o isComplete.o
2021-06-03T19:14:04.6004720Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c leadingSpaces.cpp -o leadingSpaces.o
2021-06-03T19:14:07.4143746Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c parser2.cpp -o parser2.o
2021-06-03T19:14:11.8852383Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include   -fpic  -g -O2  -c wrapUsage.cpp -o wrapUsage.o
2021-06-03T19:14:14.8240847Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:14:14.9132938Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs
2021-06-03T19:14:14.9172196Z ** R
2021-06-03T19:14:14.9449080Z ** inst
2021-06-03T19:14:14.9466408Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:18.4976719Z ** help
2021-06-03T19:14:18.5636933Z *** installing help indices
2021-06-03T19:14:18.6125214Z *** copying figures
2021-06-03T19:14:18.6127541Z ** building package indices
2021-06-03T19:14:18.8314111Z ** installing vignettes
2021-06-03T19:14:18.8406162Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:14:19.1686324Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:14:19.1876970Z ** testing if installed package can be loaded from final location
2021-06-03T19:14:19.5853964Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:14:19.5889766Z * DONE (roxygen2)
2021-06-03T19:14:19.7976634Z * installing *source* package ‘rematch2’ ...
2021-06-03T19:14:19.7991973Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked
2021-06-03T19:14:19.7995110Z ** using staged installation
2021-06-03T19:14:19.8124430Z ** R
2021-06-03T19:14:19.8166028Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:20.2767915Z ** help
2021-06-03T19:14:20.2987143Z *** installing help indices
2021-06-03T19:14:20.3191111Z ** building package indices
2021-06-03T19:14:20.5065437Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:14:20.8323679Z ** testing if installed package can be loaded from final location
2021-06-03T19:14:21.1564991Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:14:21.1571200Z * DONE (rematch2)
2021-06-03T19:14:21.4006011Z * installing *source* package ‘rcmdcheck’ ...
2021-06-03T19:14:21.4029500Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked
2021-06-03T19:14:21.4030725Z ** using staged installation
2021-06-03T19:14:21.4158216Z ** R
2021-06-03T19:14:21.4231548Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:22.5214747Z ** help
2021-06-03T19:14:22.5547736Z *** installing help indices
2021-06-03T19:14:22.5827459Z ** building package indices
2021-06-03T19:14:22.7800122Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:14:23.0440098Z ** testing if installed package can be loaded from final location
2021-06-03T19:14:23.3225481Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:14:23.3238863Z * DONE (rcmdcheck)
2021-06-03T19:14:23.5538238Z * installing *source* package ‘waldo’ ...
2021-06-03T19:14:23.5556821Z ** package ‘waldo’ successfully unpacked and MD5 sums checked
2021-06-03T19:14:23.5557995Z ** using staged installation
2021-06-03T19:14:23.5687802Z ** R
2021-06-03T19:14:23.5742532Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:24.2218802Z ** help
2021-06-03T19:14:24.2352592Z *** installing help indices
2021-06-03T19:14:24.2519868Z *** copying figures
2021-06-03T19:14:24.2521980Z ** building package indices
2021-06-03T19:14:24.4331762Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:14:24.6620828Z ** testing if installed package can be loaded from final location
2021-06-03T19:14:24.8904829Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:14:24.8912797Z * DONE (waldo)
2021-06-03T19:14:25.3612997Z * installing *source* package ‘testthat’ ...
2021-06-03T19:14:25.3733173Z ** package ‘testthat’ successfully unpacked and MD5 sums checked
2021-06-03T19:14:25.3735654Z ** using staged installation
2021-06-03T19:14:25.3941028Z ** libs
2021-06-03T19:14:25.4016094Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:14:25.4456000Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include   -fpic  -g -O2  -c reassign.c -o reassign.o
2021-06-03T19:14:25.4935580Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include   -fpic  -g -O2  -c test-catch.cpp -o test-catch.o
2021-06-03T19:14:26.2153401Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include   -fpic  -g -O2  -c test-example.cpp -o test-example.o
2021-06-03T19:14:26.7797806Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT  -I/usr/local/include   -fpic  -g -O2  -c test-runner.cpp -o test-runner.o
2021-06-03T19:14:42.2988288Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:14:42.4518119Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs
2021-06-03T19:14:42.4618339Z ** R
2021-06-03T19:14:42.4917225Z ** inst
2021-06-03T19:14:42.4947706Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:51.5416677Z ** help
2021-06-03T19:14:51.7432240Z *** installing help indices
2021-06-03T19:14:51.9023116Z *** copying figures
2021-06-03T19:14:51.9027674Z ** building package indices
2021-06-03T19:14:52.2002585Z ** installing vignettes
2021-06-03T19:14:52.2088778Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:14:52.4059139Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:14:52.4280026Z ** testing if installed package can be loaded from final location
2021-06-03T19:14:52.8412426Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:14:52.8489096Z * DONE (testthat)
2021-06-03T19:14:53.1932152Z * installing *source* package ‘devtools’ ...
2021-06-03T19:14:53.1986352Z ** package ‘devtools’ successfully unpacked and MD5 sums checked
2021-06-03T19:14:53.1987455Z ** using staged installation
2021-06-03T19:14:53.2254869Z ** R
2021-06-03T19:14:53.2385311Z ** inst
2021-06-03T19:14:53.2393222Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:54.8366487Z ** help
2021-06-03T19:14:54.9384136Z *** installing help indices
2021-06-03T19:14:55.0117213Z *** copying figures
2021-06-03T19:14:55.0118934Z ** building package indices
2021-06-03T19:14:55.2526456Z ** installing vignettes
2021-06-03T19:14:55.2572191Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:14:55.8839219Z ** testing if installed package can be loaded from final location
2021-06-03T19:14:56.5412817Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:14:56.5430782Z * DONE (devtools)
2021-06-03T19:14:56.5515681Z 
2021-06-03T19:14:56.5516569Z The downloaded source packages are in
2021-06-03T19:14:56.5518150Z 	‘/tmp/Rtmp4xm9UN/downloaded_packages’
2021-06-03T19:14:56.6935226Z Downloading GitHub repo muschellij2/desc@HEAD
2021-06-03T19:14:57.3937871Z 
2021-06-03T19:14:57.6642197Z   
2021-06-03T19:14:57.6644390Z    checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc217056f49/muschellij2-desc-7be86f2/DESCRIPTION’ ...
2021-06-03T19:14:57.6689640Z   
2021-06-03T19:14:57.6692522Z ✔  checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc217056f49/muschellij2-desc-7be86f2/DESCRIPTION’
2021-06-03T19:14:57.6799097Z 
2021-06-03T19:14:57.6799829Z   
2021-06-03T19:14:57.6800762Z ─  preparing ‘desc’:
2021-06-03T19:14:57.6801257Z 
2021-06-03T19:14:57.6801712Z   
2021-06-03T19:14:57.6980065Z    checking DESCRIPTION meta-information ...
2021-06-03T19:14:57.7000121Z   
2021-06-03T19:14:57.7002082Z ✔  checking DESCRIPTION meta-information
2021-06-03T19:14:57.7538710Z 
2021-06-03T19:14:57.7561551Z   
2021-06-03T19:14:57.7564207Z ─  checking for LF line-endings in source and make files and shell scripts
2021-06-03T19:14:57.7573098Z 
2021-06-03T19:14:57.7594134Z   
2021-06-03T19:14:57.7596345Z ─  checking for empty or unneeded directories
2021-06-03T19:14:57.7599448Z    Omitted ‘LazyData’ from DESCRIPTION
2021-06-03T19:14:57.7637850Z 
2021-06-03T19:14:57.7657028Z   
2021-06-03T19:14:57.7659046Z ─  building ‘desc_1.2.0.9000.tar.gz’
2021-06-03T19:14:57.8673663Z 
2021-06-03T19:14:57.8676569Z   
2021-06-03T19:14:57.8678058Z    
2021-06-03T19:14:57.8772915Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:14:57.8774126Z (as ‘lib’ is unspecified)
2021-06-03T19:14:58.1624763Z * installing *source* package ‘desc’ ...
2021-06-03T19:14:58.1653656Z ** using staged installation
2021-06-03T19:14:58.1816164Z ** R
2021-06-03T19:14:58.1941215Z ** inst
2021-06-03T19:14:58.1956010Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:14:59.6507625Z ** help
2021-06-03T19:14:59.7725110Z *** installing help indices
2021-06-03T19:14:59.8557429Z ** building package indices
2021-06-03T19:15:00.1135544Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:00.2885825Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:00.4881052Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:00.4895184Z * DONE (desc)
2021-06-03T19:15:00.6736261Z 
2021-06-03T19:15:00.6737316Z   
2021-06-03T19:15:00.6748968Z    checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc25ad31895/muschellij2-ghtravis-0b26809/DESCRIPTION’ ...
2021-06-03T19:15:00.6764763Z   
2021-06-03T19:15:00.6766611Z ✔  checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc25ad31895/muschellij2-ghtravis-0b26809/DESCRIPTION’
2021-06-03T19:15:00.6854884Z 
2021-06-03T19:15:00.6855578Z   
2021-06-03T19:15:00.6856528Z ─  preparing ‘ghtravis’:
2021-06-03T19:15:00.6857032Z 
2021-06-03T19:15:00.6857484Z   
2021-06-03T19:15:00.6932333Z    checking DESCRIPTION meta-information ...
2021-06-03T19:15:00.6951260Z   
2021-06-03T19:15:00.6953167Z ✔  checking DESCRIPTION meta-information
2021-06-03T19:15:00.7305313Z 
2021-06-03T19:15:00.7328077Z   
2021-06-03T19:15:00.7330646Z ─  checking for LF line-endings in source and make files and shell scripts
2021-06-03T19:15:00.7338525Z 
2021-06-03T19:15:00.7359652Z   
2021-06-03T19:15:00.7361837Z ─  checking for empty or unneeded directories
2021-06-03T19:15:00.7364879Z    Omitted ‘LazyData’ from DESCRIPTION
2021-06-03T19:15:00.7439246Z 
2021-06-03T19:15:00.7458494Z   
2021-06-03T19:15:00.7460354Z ─  building ‘ghtravis_0.15.1.tar.gz’
2021-06-03T19:15:00.7659109Z 
2021-06-03T19:15:00.7661525Z   
2021-06-03T19:15:00.7662926Z    
2021-06-03T19:15:00.7954071Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:15:00.7955269Z (as ‘lib’ is unspecified)
2021-06-03T19:15:01.0207710Z * installing *source* package ‘ghtravis’ ...
2021-06-03T19:15:01.0209238Z ** using staged installation
2021-06-03T19:15:01.0348487Z ** R
2021-06-03T19:15:01.0429391Z ** inst
2021-06-03T19:15:01.0437538Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:02.2286099Z ** help
2021-06-03T19:15:02.2828056Z *** installing help indices
2021-06-03T19:15:02.3240674Z ** building package indices
2021-06-03T19:15:02.5455965Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:03.1946644Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:03.8457268Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:03.8465489Z * DONE (ghtravis)
2021-06-03T19:15:03.8547161Z Using github PAT from envvar GITHUB_PAT
2021-06-03T19:15:04.0718121Z Downloading GitHub repo muschellij2/aghast@HEAD
2021-06-03T19:15:05.0224178Z 
2021-06-03T19:15:05.0225888Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr
2021-06-03T19:15:05.0227266Z tidyselect (NA -> 1.1.1) [CRAN]
2021-06-03T19:15:05.0228354Z generics   (NA -> 0.1.0) [CRAN]
2021-06-03T19:15:05.0229321Z cpp11      (NA -> 0.2.7) [CRAN]
2021-06-03T19:15:05.0230232Z dplyr      (NA -> 1.0.6) [CRAN]
2021-06-03T19:15:05.0231145Z tidyr      (NA -> 1.1.3) [CRAN]
2021-06-03T19:15:05.0233952Z Installing packages into ‘/home/runner/work/_temp/Library’
2021-06-03T19:15:05.0235093Z (as ‘lib’ is unspecified)
2021-06-03T19:15:18.1488265Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz'
2021-06-03T19:15:18.6547209Z Content type 'binary/octet-stream' length 92124 bytes (89 KB)
2021-06-03T19:15:18.6600697Z ==================================================
2021-06-03T19:15:18.6601218Z downloaded 89 KB
2021-06-03T19:15:18.6601530Z 
2021-06-03T19:15:18.6640213Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz'
2021-06-03T19:15:19.0495338Z Content type 'binary/octet-stream' length 118869 bytes (116 KB)
2021-06-03T19:15:19.0602374Z ==================================================
2021-06-03T19:15:19.0603081Z downloaded 116 KB
2021-06-03T19:15:19.0603525Z 
2021-06-03T19:15:19.0635416Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz'
2021-06-03T19:15:19.7194542Z Content type 'binary/octet-stream' length 200157 bytes (195 KB)
2021-06-03T19:15:19.7340031Z ==================================================
2021-06-03T19:15:19.7342025Z downloaded 195 KB
2021-06-03T19:15:19.7343168Z 
2021-06-03T19:15:19.7376605Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz'
2021-06-03T19:15:20.8710846Z Content type 'binary/octet-stream' length 954544 bytes (932 KB)
2021-06-03T19:15:20.8971252Z ==================================================
2021-06-03T19:15:20.8972135Z downloaded 932 KB
2021-06-03T19:15:20.8972599Z 
2021-06-03T19:15:20.9002899Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz'
2021-06-03T19:15:21.3152790Z Content type 'binary/octet-stream' length 706784 bytes (690 KB)
2021-06-03T19:15:21.3396607Z ==================================================
2021-06-03T19:15:21.3397532Z downloaded 690 KB
2021-06-03T19:15:21.3397983Z 
2021-06-03T19:15:21.5905324Z * installing *source* package ‘tidyselect’ ...
2021-06-03T19:15:21.5934108Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:21.5935320Z ** using staged installation
2021-06-03T19:15:21.6083178Z ** R
2021-06-03T19:15:21.6166865Z ** inst
2021-06-03T19:15:21.6177467Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:22.4832999Z ** help
2021-06-03T19:15:22.5358183Z *** installing help indices
2021-06-03T19:15:22.5740315Z ** building package indices
2021-06-03T19:15:22.7794169Z ** installing vignettes
2021-06-03T19:15:22.7795465Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:23.0156592Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:23.2622872Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:23.2633430Z * DONE (tidyselect)
2021-06-03T19:15:23.5204596Z * installing *source* package ‘generics’ ...
2021-06-03T19:15:23.5234795Z ** package ‘generics’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:23.5236047Z ** using staged installation
2021-06-03T19:15:23.5360015Z ** R
2021-06-03T19:15:23.5412615Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:23.8284726Z ** help
2021-06-03T19:15:23.9348015Z *** installing help indices
2021-06-03T19:15:23.9793994Z ** building package indices
2021-06-03T19:15:24.1949075Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:24.3610131Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:24.5312286Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:24.5317285Z * DONE (generics)
2021-06-03T19:15:24.7869176Z * installing *source* package ‘cpp11’ ...
2021-06-03T19:15:24.7903172Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:24.7904353Z ** using staged installation
2021-06-03T19:15:24.8050953Z ** R
2021-06-03T19:15:24.8092985Z ** inst
2021-06-03T19:15:24.8121022Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:25.1750963Z ** help
2021-06-03T19:15:25.1949067Z *** installing help indices
2021-06-03T19:15:25.2120993Z ** building package indices
2021-06-03T19:15:25.3895265Z ** installing vignettes
2021-06-03T19:15:25.3950801Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:25.5592652Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:25.7287086Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:25.7296963Z * DONE (cpp11)
2021-06-03T19:15:26.1955220Z * installing *source* package ‘dplyr’ ...
2021-06-03T19:15:26.2077453Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:26.2079379Z ** using staged installation
2021-06-03T19:15:26.2311996Z ** libs
2021-06-03T19:15:26.2359989Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c chop.cpp -o chop.o
2021-06-03T19:15:26.3656674Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c filter.cpp -o filter.o
2021-06-03T19:15:26.5220716Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c funs.cpp -o funs.o
2021-06-03T19:15:26.6415054Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c group_by.cpp -o group_by.o
2021-06-03T19:15:27.1437989Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c group_data.cpp -o group_data.o
2021-06-03T19:15:27.2419410Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c imports.cpp -o imports.o
2021-06-03T19:15:27.3444255Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.cpp -o init.o
2021-06-03T19:15:27.4490919Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c mask.cpp -o mask.o
2021-06-03T19:15:27.5706929Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c mutate.cpp -o mutate.o
2021-06-03T19:15:27.6855087Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c slice.cpp -o slice.o
2021-06-03T19:15:27.7744911Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c summarise.cpp -o summarise.o
2021-06-03T19:15:27.9275331Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:15:27.9874173Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs
2021-06-03T19:15:27.9889762Z ** R
2021-06-03T19:15:28.0286088Z ** data
2021-06-03T19:15:28.0292505Z *** moving datasets to lazyload DB
2021-06-03T19:15:28.1199948Z ** inst
2021-06-03T19:15:28.1226018Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:32.3208175Z ** help
2021-06-03T19:15:32.7634825Z *** installing help indices
2021-06-03T19:15:32.9689022Z *** copying figures
2021-06-03T19:15:32.9694649Z ** building package indices
2021-06-03T19:15:33.3086498Z ** installing vignettes
2021-06-03T19:15:33.3210555Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:33.7541624Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:15:33.7717359Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:34.2819375Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:34.2864789Z * DONE (dplyr)
2021-06-03T19:15:34.6305535Z * installing *source* package ‘tidyr’ ...
2021-06-03T19:15:34.6375506Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:34.6376715Z ** using staged installation
2021-06-03T19:15:34.6547205Z ** libs
2021-06-03T19:15:34.6605061Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include   -fpic  -g -O2  -c cpp11.cpp -o cpp11.o
2021-06-03T19:15:35.5574348Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include   -fpic  -g -O2  -c fill.cpp -o fill.o
2021-06-03T19:15:35.8666931Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include   -fpic  -g -O2  -c melt.cpp -o melt.o
2021-06-03T19:15:37.4177948Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include   -fpic  -g -O2  -c simplifyPieces.cpp -o simplifyPieces.o
2021-06-03T19:15:38.6168932Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:15:38.6887711Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs
2021-06-03T19:15:38.6899897Z ** R
2021-06-03T19:15:38.7052315Z ** data
2021-06-03T19:15:38.7063360Z *** moving datasets to lazyload DB
2021-06-03T19:15:38.8864304Z ** inst
2021-06-03T19:15:38.8885160Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:40.4602930Z ** help
2021-06-03T19:15:40.5715126Z *** installing help indices
2021-06-03T19:15:40.6451004Z *** copying figures
2021-06-03T19:15:40.6456064Z ** building package indices
2021-06-03T19:15:40.8886514Z ** installing vignettes
2021-06-03T19:15:40.8937192Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:41.3366484Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:15:41.3549370Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:41.8133915Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:41.8151943Z * DONE (tidyr)
2021-06-03T19:15:41.8239622Z 
2021-06-03T19:15:41.8240627Z The downloaded source packages are in
2021-06-03T19:15:41.8241920Z 	‘/tmp/Rtmp4xm9UN/downloaded_packages’
2021-06-03T19:15:42.0030542Z   
2021-06-03T19:15:42.0043708Z    checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc2240db8c6/muschellij2-aghast-0c3b853/DESCRIPTION’ ...
2021-06-03T19:15:42.0060551Z   
2021-06-03T19:15:42.0063369Z ✔  checking for file ‘/tmp/Rtmp4xm9UN/remotes6dc2240db8c6/muschellij2-aghast-0c3b853/DESCRIPTION’
2021-06-03T19:15:42.0131142Z 
2021-06-03T19:15:42.0131824Z   
2021-06-03T19:15:42.0132733Z ─  preparing ‘aghast’:
2021-06-03T19:15:42.0133224Z 
2021-06-03T19:15:42.0133695Z   
2021-06-03T19:15:42.0207437Z    checking DESCRIPTION meta-information ...
2021-06-03T19:15:42.0225955Z   
2021-06-03T19:15:42.0227858Z ✔  checking DESCRIPTION meta-information
2021-06-03T19:15:42.0456436Z 
2021-06-03T19:15:42.0476866Z   
2021-06-03T19:15:42.0479242Z ─  checking for LF line-endings in source and make files and shell scripts
2021-06-03T19:15:42.0486763Z 
2021-06-03T19:15:42.0507080Z   
2021-06-03T19:15:42.0509292Z ─  checking for empty or unneeded directories
2021-06-03T19:15:42.0512296Z    Omitted ‘LazyData’ from DESCRIPTION
2021-06-03T19:15:42.0531911Z 
2021-06-03T19:15:42.0549574Z   
2021-06-03T19:15:42.0551366Z ─  building ‘aghast_0.2.1.tar.gz’
2021-06-03T19:15:42.0636601Z 
2021-06-03T19:15:42.0638790Z   
2021-06-03T19:15:42.0640008Z    
2021-06-03T19:15:42.0704310Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:15:42.0705310Z (as ‘lib’ is unspecified)
2021-06-03T19:15:42.2632484Z * installing *source* package ‘aghast’ ...
2021-06-03T19:15:42.2634104Z ** using staged installation
2021-06-03T19:15:42.2786841Z ** R
2021-06-03T19:15:42.2839939Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:42.6830075Z ** help
2021-06-03T19:15:42.7107060Z *** installing help indices
2021-06-03T19:15:42.7314391Z ** building package indices
2021-06-03T19:15:42.9176349Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:43.0952078Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:43.2693159Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:43.2700121Z * DONE (aghast)
2021-06-03T19:15:43.2777780Z Installing 1 packages: covr
2021-06-03T19:15:43.2783686Z Installing package into ‘/home/runner/work/_temp/Library’
2021-06-03T19:15:43.2784589Z (as ‘lib’ is unspecified)
2021-06-03T19:15:56.4097001Z also installing the dependencies ‘lazyeval’, ‘rex’
2021-06-03T19:15:56.4098022Z 
2021-06-03T19:15:56.4103441Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz'
2021-06-03T19:15:56.9041889Z Content type 'application/x-tar' length 83462 bytes (81 KB)
2021-06-03T19:15:56.9108137Z ==================================================
2021-06-03T19:15:56.9109134Z downloaded 81 KB
2021-06-03T19:15:56.9109760Z 
2021-06-03T19:15:56.9142110Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz'
2021-06-03T19:15:57.4201355Z Content type 'binary/octet-stream' length 91701 bytes (89 KB)
2021-06-03T19:15:57.4252931Z ==================================================
2021-06-03T19:15:57.4253785Z downloaded 89 KB
2021-06-03T19:15:57.4254319Z 
2021-06-03T19:15:57.4284760Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz'
2021-06-03T19:15:57.9570313Z Content type 'binary/octet-stream' length 147467 bytes (144 KB)
2021-06-03T19:15:57.9686303Z ==================================================
2021-06-03T19:15:57.9686827Z downloaded 144 KB
2021-06-03T19:15:57.9688334Z 
2021-06-03T19:15:58.2128763Z * installing *source* package ‘lazyeval’ ...
2021-06-03T19:15:58.2155100Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:58.2156326Z ** using staged installation
2021-06-03T19:15:58.2274374Z ** libs
2021-06-03T19:15:58.2317449Z 
2021-06-03T19:15:58.2318886Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c expr.c -o expr.o
2021-06-03T19:15:58.2896189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:15:58.3252015Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c interp.c -o interp.o
2021-06-03T19:15:58.3819902Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c lazy.c -o lazy.o
2021-06-03T19:15:58.4549461Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c name.c -o name.o
2021-06-03T19:15:58.5140677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c utils.c -o utils.o
2021-06-03T19:15:58.5806565Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:15:58.6035296Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs
2021-06-03T19:15:58.6047612Z ** R
2021-06-03T19:15:58.6108859Z ** inst
2021-06-03T19:15:58.6121299Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:15:59.0708952Z ** help
2021-06-03T19:15:59.1233505Z *** installing help indices
2021-06-03T19:15:59.1652087Z ** building package indices
2021-06-03T19:15:59.3752415Z ** installing vignettes
2021-06-03T19:15:59.3818681Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:15:59.5487730Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:15:59.5654629Z ** testing if installed package can be loaded from final location
2021-06-03T19:15:59.7378072Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:15:59.7386016Z * DONE (lazyeval)
2021-06-03T19:15:59.9801397Z * installing *source* package ‘rex’ ...
2021-06-03T19:15:59.9824220Z ** package ‘rex’ successfully unpacked and MD5 sums checked
2021-06-03T19:15:59.9825276Z ** using staged installation
2021-06-03T19:15:59.9955777Z ** R
2021-06-03T19:16:00.0009198Z ** inst
2021-06-03T19:16:00.0019458Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:16:00.4788249Z ** help
2021-06-03T19:16:00.5277201Z *** installing help indices
2021-06-03T19:16:00.5643269Z ** building package indices
2021-06-03T19:16:00.7782367Z ** installing vignettes
2021-06-03T19:16:00.7834479Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:16:00.9531422Z ** testing if installed package can be loaded from final location
2021-06-03T19:16:01.1274575Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:16:01.1283185Z * DONE (rex)
2021-06-03T19:16:01.4652278Z * installing *source* package ‘covr’ ...
2021-06-03T19:16:01.4708095Z ** package ‘covr’ successfully unpacked and MD5 sums checked
2021-06-03T19:16:01.4709311Z ** using staged installation
2021-06-03T19:16:01.4907869Z ** libs
2021-06-03T19:16:01.4954193Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c reassign.c -o reassign.o
2021-06-03T19:16:01.5484505Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:16:01.5641156Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs
2021-06-03T19:16:01.5651848Z ** R
2021-06-03T19:16:01.5783596Z ** inst
2021-06-03T19:16:01.5804904Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:16:02.8358245Z ** help
2021-06-03T19:16:02.8946190Z *** installing help indices
2021-06-03T19:16:02.9417558Z *** copying figures
2021-06-03T19:16:02.9419138Z ** building package indices
2021-06-03T19:16:03.1627208Z ** installing vignettes
2021-06-03T19:16:03.1682632Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:16:03.3615897Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:16:03.3787382Z ** testing if installed package can be loaded from final location
2021-06-03T19:16:03.5854022Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:16:03.5874120Z * DONE (covr)
2021-06-03T19:16:03.5965470Z 
2021-06-03T19:16:03.5966501Z The downloaded source packages are in
2021-06-03T19:16:03.5967824Z 	‘/tmp/Rtmp4xm9UN/downloaded_packages’
2021-06-03T19:16:03.6099940Z ##[group]Run remotes::install_deps(dependencies = TRUE)
2021-06-03T19:16:03.6100656Z remotes::install_deps(dependencies = TRUE)
2021-06-03T19:16:03.6101235Z remotes::install_cran("rcmdcheck")
2021-06-03T19:16:03.6101758Z remotes::install_cran("markdown")
2021-06-03T19:16:03.6107972Z shell: /usr/local/bin/Rscript {0}
2021-06-03T19:16:03.6108356Z env:
2021-06-03T19:16:03.6108777Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:16:03.6109225Z   TIC_DEPLOY_KEY: 
2021-06-03T19:16:03.6109983Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:16:03.6111660Z   GITHUB_PAT: ***
2021-06-03T19:16:03.6112514Z   COVERALLS_TOKEN: ***
2021-06-03T19:16:03.6112968Z   continue-on-error: true
2021-06-03T19:16:03.6113417Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:16:03.6113878Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:16:03.6114285Z   TZ: UTC
2021-06-03T19:16:03.6114647Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:16:03.6115067Z   NOT_CRAN: true
2021-06-03T19:16:03.6115487Z ##[endgroup]
2021-06-03T19:16:19.7378343Z base64enc    (NA -> 0.1-3   ) [CRAN]
2021-06-03T19:16:19.7379682Z tinytex      (NA -> 0.32    ) [CRAN]
2021-06-03T19:16:19.7380707Z htmltools    (NA -> 0.5.1.1 ) [CRAN]
2021-06-03T19:16:19.7381676Z rmarkdown    (NA -> 2.8     ) [CRAN]
2021-06-03T19:16:19.7382671Z matrixStats  (NA -> 0.59.0  ) [CRAN]
2021-06-03T19:16:19.7383637Z IRanges      (NA -> 2.27.0  ) [CRAN]
2021-06-03T19:16:19.7384571Z S4Vectors    (NA -> 0.31.0  ) [CRAN]
2021-06-03T19:16:19.7385567Z MatrixGen... (NA -> 1.5.0   ) [CRAN]
2021-06-03T19:16:19.7386624Z BiocGenerics (NA -> 0.39.0  ) [CRAN]
2021-06-03T19:16:19.7387574Z bitops       (NA -> 1.0-7   ) [CRAN]
2021-06-03T19:16:19.7388536Z GenomeInf... (NA -> 1.2.6   ) [CRAN]
2021-06-03T19:16:19.7389474Z RCurl        (NA -> 1.98-1.3) [CRAN]
2021-06-03T19:16:19.7390400Z zlibbioc     (NA -> 1.39.0  ) [CRAN]
2021-06-03T19:16:19.7391341Z XVector      (NA -> 0.33.0  ) [CRAN]
2021-06-03T19:16:19.7392304Z GenomeInfoDb (NA -> 1.29.0  ) [CRAN]
2021-06-03T19:16:19.7393307Z BiocManager  (NA -> 1.30.15 ) [CRAN]
2021-06-03T19:16:19.7394269Z bookdown     (NA -> 0.22    ) [CRAN]
2021-06-03T19:16:19.7395223Z DelayedArray (NA -> 0.19.0  ) [CRAN]
2021-06-03T19:16:19.7396189Z Biobase      (NA -> 2.53.0  ) [CRAN]
2021-06-03T19:16:19.7397144Z GenomicRa... (NA -> 1.45.0  ) [CRAN]
2021-06-03T19:16:19.7398089Z BiocStyle    (NA -> 2.21.1  ) [CRAN]
2021-06-03T19:16:19.7399707Z Summarize... (NA -> 1.23.0  ) [CRAN]
2021-06-03T19:16:19.7405804Z Installing 22 packages: base64enc, tinytex, htmltools, rmarkdown, matrixStats, IRanges, S4Vectors, MatrixGenerics, BiocGenerics, bitops, GenomeInfoDbData, RCurl, zlibbioc, XVector, GenomeInfoDb, BiocManager, bookdown, DelayedArray, Biobase, GenomicRanges, BiocStyle, SummarizedExperiment
2021-06-03T19:16:19.7418386Z Installing packages into ‘/home/runner/work/_temp/Library’
2021-06-03T19:16:19.7419143Z (as ‘lib’ is unspecified)
2021-06-03T19:16:33.4105964Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz'
2021-06-03T19:16:33.8098140Z Content type 'application/x-tar' length 7843 bytes
2021-06-03T19:16:33.8098830Z ==================================================
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2021-06-03T19:16:33.8099636Z 
2021-06-03T19:16:33.8129994Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.32.tar.gz'
2021-06-03T19:16:34.3190105Z Content type 'binary/octet-stream' length 30168 bytes (29 KB)
2021-06-03T19:16:34.3190849Z ==================================================
2021-06-03T19:16:34.3191328Z downloaded 29 KB
2021-06-03T19:16:34.3191634Z 
2021-06-03T19:16:34.3224821Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz'
2021-06-03T19:16:34.8100660Z Content type 'binary/octet-stream' length 72110 bytes (70 KB)
2021-06-03T19:16:34.8155427Z ==================================================
2021-06-03T19:16:34.8156092Z downloaded 70 KB
2021-06-03T19:16:34.8156353Z 
2021-06-03T19:16:34.8189717Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz'
2021-06-03T19:16:35.5577730Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB)
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2021-06-03T19:16:35.5982279Z 
2021-06-03T19:16:35.6016995Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.59.0.tar.gz'
2021-06-03T19:16:35.9539110Z Content type 'binary/octet-stream' length 193787 bytes (189 KB)
2021-06-03T19:16:35.9676177Z ==================================================
2021-06-03T19:16:35.9678148Z downloaded 189 KB
2021-06-03T19:16:35.9678677Z 
2021-06-03T19:16:35.9712970Z trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/IRanges_2.27.0.tar.gz'
2021-06-03T19:16:36.1030924Z Content type 'application/x-gzip' length 454830 bytes (444 KB)
2021-06-03T19:16:36.1242007Z ==================================================
2021-06-03T19:16:36.1242893Z downloaded 444 KB
2021-06-03T19:16:36.1243478Z 
2021-06-03T19:16:36.1269391Z trying URL 'https://bioconductor.org/packages/3.14/bioc/src/contrib/S4Vectors_0.31.0.tar.gz'
2021-06-03T19:16:36.1668303Z Content type 'application/x-gzip' length 666204 bytes (650 KB)
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2021-06-03T19:16:42.4046672Z 
2021-06-03T19:16:42.5951295Z * installing *source* package ‘base64enc’ ...
2021-06-03T19:16:42.5958565Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked
2021-06-03T19:16:42.5959622Z ** using staged installation
2021-06-03T19:16:42.6057642Z ** libs
2021-06-03T19:16:42.6107543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c base64.c -o base64.o
2021-06-03T19:16:42.7146819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c uriencode.c -o uriencode.o
2021-06-03T19:16:42.7861095Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c utf8.c -o utf8.o
2021-06-03T19:16:42.8562577Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:16:42.8808247Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs
2021-06-03T19:16:42.8809404Z ** R
2021-06-03T19:16:42.8819592Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:16:43.1198763Z ** help
2021-06-03T19:16:43.1406681Z *** installing help indices
2021-06-03T19:16:43.1560536Z ** building package indices
2021-06-03T19:16:43.3374113Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:16:43.5059673Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:16:43.5231423Z ** testing if installed package can be loaded from final location
2021-06-03T19:16:43.6876827Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:16:43.6882308Z * DONE (base64enc)
2021-06-03T19:16:43.8913339Z * installing *source* package ‘tinytex’ ...
2021-06-03T19:16:43.8926048Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked
2021-06-03T19:16:43.8927037Z ** using staged installation
2021-06-03T19:16:43.9114370Z ** R
2021-06-03T19:16:43.9184043Z ** inst
2021-06-03T19:16:43.9190577Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:16:44.5806646Z ** help
2021-06-03T19:16:44.6083232Z *** installing help indices
2021-06-03T19:16:44.6344734Z ** building package indices
2021-06-03T19:16:44.8322862Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:16:45.0069696Z ** testing if installed package can be loaded from final location
2021-06-03T19:16:45.1901337Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:16:45.1910407Z * DONE (tinytex)
2021-06-03T19:16:45.6030532Z * installing *source* package ‘matrixStats’ ...
2021-06-03T19:16:45.6124903Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked
2021-06-03T19:16:45.6127585Z ** using staged installation
2021-06-03T19:16:45.6264952Z ** libs
2021-06-03T19:16:45.6322910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c 000.init.c -o 000.init.o
2021-06-03T19:16:45.6706132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c allocMatrix2.c -o allocMatrix2.o
2021-06-03T19:16:45.7483315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c anyMissing.c -o anyMissing.o
2021-06-03T19:16:45.8470526Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c binCounts.c -o binCounts.o
2021-06-03T19:16:45.9379807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c binMeans.c -o binMeans.o
2021-06-03T19:16:46.0669599Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c colCounts.c -o colCounts.o
2021-06-03T19:16:47.3057548Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c colOrderStats.c -o colOrderStats.o
2021-06-03T19:16:47.6457605Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c colRanges.c -o colRanges.o
2021-06-03T19:16:49.0216123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c diff2.c -o diff2.o
2021-06-03T19:16:49.2203821Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c indexByRow.c -o indexByRow.o
2021-06-03T19:16:49.2790590Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c logSumExp.c -o logSumExp.o
2021-06-03T19:16:49.4672912Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c mean2.c -o mean2.o
2021-06-03T19:16:49.6015578Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c productExpSumLog.c -o productExpSumLog.o
2021-06-03T19:16:49.7417549Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c psortKM.c -o psortKM.o
2021-06-03T19:16:49.8054418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowCounts.c -o rowCounts.o
2021-06-03T19:16:51.1246103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowCummaxs.c -o rowCummaxs.o
2021-06-03T19:16:52.0868229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowCummins.c -o rowCummins.o
2021-06-03T19:16:53.0487163Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowCumprods.c -o rowCumprods.o
2021-06-03T19:16:53.8620406Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowCumsums.c -o rowCumsums.o
2021-06-03T19:16:54.6763723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowDiffs.c -o rowDiffs.o
2021-06-03T19:16:56.5648618Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowLogSumExp.c -o rowLogSumExp.o
2021-06-03T19:16:56.6917809Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowMads.c -o rowMads.o
2021-06-03T19:16:57.6173336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowMeans2.c -o rowMeans2.o
2021-06-03T19:16:58.1627504Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowMedians.c -o rowMedians.o
2021-06-03T19:16:59.0009588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowOrderStats.c -o rowOrderStats.o
2021-06-03T19:16:59.3872123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowRanges.c -o rowRanges.o
2021-06-03T19:17:00.8386848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowRanksWithTies.c -o rowRanksWithTies.o
2021-06-03T19:17:12.1347123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowSums2.c -o rowSums2.o
2021-06-03T19:17:12.6578429Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowVars.c -o rowVars.o
2021-06-03T19:17:13.2700078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c signTabulate.c -o signTabulate.o
2021-06-03T19:17:13.3847245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sum2.c -o sum2.o
2021-06-03T19:17:13.4907937Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c validateIndices.c -o validateIndices.o
2021-06-03T19:17:13.7211920Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c weightedMean.c -o weightedMean.o
2021-06-03T19:17:13.8800473Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c weightedMedian.c -o weightedMedian.o
2021-06-03T19:17:14.2740146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c x_OP_y.c -o x_OP_y.o
2021-06-03T19:18:03.7988755Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:03.8847864Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs
2021-06-03T19:18:03.8967415Z ** R
2021-06-03T19:18:03.9160066Z ** inst
2021-06-03T19:18:03.9204267Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:05.1523563Z ** help
2021-06-03T19:18:05.2825869Z *** installing help indices
2021-06-03T19:18:05.3631769Z ** building package indices
2021-06-03T19:18:05.6166583Z ** installing vignettes
2021-06-03T19:18:05.6195213Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:05.7920499Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:05.8144197Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:06.0003702Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:06.0022274Z * DONE (matrixStats)
2021-06-03T19:18:06.2832255Z * installing *source* package ‘BiocGenerics’ ...
2021-06-03T19:18:06.2833985Z ** using staged installation
2021-06-03T19:18:06.2982357Z ** R
2021-06-03T19:18:06.3041146Z ** inst
2021-06-03T19:18:06.3051865Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:08.1631123Z Creating a new generic function for ‘append’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1633091Z Creating a new generic function for ‘as.data.frame’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1634430Z Creating a new generic function for ‘cbind’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1635679Z Creating a new generic function for ‘rbind’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1636962Z Creating a new generic function for ‘do.call’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1638265Z Creating a new generic function for ‘duplicated’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1639616Z Creating a new generic function for ‘anyDuplicated’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1640901Z Creating a new generic function for ‘eval’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1642149Z Creating a new generic function for ‘pmax’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1643386Z Creating a new generic function for ‘pmin’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1644645Z Creating a new generic function for ‘pmax.int’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1646763Z Creating a new generic function for ‘pmin.int’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1647400Z ** help
2021-06-03T19:18:08.1648261Z Creating a new generic function for ‘Reduce’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1653943Z Creating a new generic function for ‘Filter’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1655282Z Creating a new generic function for ‘Find’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1656440Z Creating a new generic function for ‘Map’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1657643Z Creating a new generic function for ‘Position’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1658820Z Creating a new generic function for ‘get’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1659962Z Creating a new generic function for ‘mget’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1661130Z Creating a new generic function for ‘grep’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1662305Z Creating a new generic function for ‘grepl’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1663528Z Creating a new generic function for ‘is.unsorted’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1664743Z Creating a new generic function for ‘lapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1665936Z Creating a new generic function for ‘sapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1667116Z Creating a new generic function for ‘mapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1668295Z Creating a new generic function for ‘match’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1669461Z Creating a new generic function for ‘order’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1670628Z Creating a new generic function for ‘paste’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1671789Z Creating a new generic function for ‘rank’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1672976Z Creating a new generic function for ‘rownames’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1674175Z Creating a new generic function for ‘colnames’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1675742Z Creating a new generic function for ‘union’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1677005Z Creating a new generic function for ‘intersect’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1679900Z Creating a new generic function for ‘setdiff’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1680960Z Creating a new generic function for ‘sort’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1682146Z Creating a new generic function for ‘table’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1683197Z Creating a new generic function for ‘tapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1684246Z Creating a new generic function for ‘unique’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1685305Z Creating a new generic function for ‘unsplit’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1686501Z Creating a new generic function for ‘var’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1687506Z Creating a new generic function for ‘sd’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1688565Z Creating a new generic function for ‘which.min’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1689645Z Creating a new generic function for ‘which.max’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1690680Z Creating a new generic function for ‘IQR’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1691676Z Creating a new generic function for ‘mad’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1692755Z Creating a new generic function for ‘xtabs’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1693842Z Creating a new generic function for ‘clusterCall’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1694972Z Creating a new generic function for ‘clusterApply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1696148Z Creating a new generic function for ‘clusterApplyLB’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1697319Z Creating a new generic function for ‘clusterEvalQ’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1698461Z Creating a new generic function for ‘clusterExport’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1699608Z Creating a new generic function for ‘clusterMap’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1700693Z Creating a new generic function for ‘parLapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1701790Z Creating a new generic function for ‘parSapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1702882Z Creating a new generic function for ‘parApply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1703974Z Creating a new generic function for ‘parRapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1705070Z Creating a new generic function for ‘parCapply’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1706183Z Creating a new generic function for ‘parLapplyLB’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1707305Z Creating a new generic function for ‘parSapplyLB’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1708410Z Creating a new generic function for ‘basename’ in package ‘BiocGenerics’
2021-06-03T19:18:08.1709483Z Creating a new generic function for ‘dirname’ in package ‘BiocGenerics’
2021-06-03T19:18:08.3960298Z *** installing help indices
2021-06-03T19:18:08.5682219Z ** building package indices
2021-06-03T19:18:08.8750691Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:09.1953569Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:09.5631620Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:09.5677072Z * DONE (BiocGenerics)
2021-06-03T19:18:09.7661124Z * installing *source* package ‘bitops’ ...
2021-06-03T19:18:09.7670568Z ** package ‘bitops’ successfully unpacked and MD5 sums checked
2021-06-03T19:18:09.7672722Z ** using staged installation
2021-06-03T19:18:09.7763107Z ** libs
2021-06-03T19:18:09.7810305Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c bit-ops.c -o bit-ops.o
2021-06-03T19:18:09.9555759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c cksum.c -o cksum.o
2021-06-03T19:18:10.0122638Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:18:10.0582402Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:10.0767919Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs
2021-06-03T19:18:10.0768587Z ** R
2021-06-03T19:18:10.0783229Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:10.2932865Z ** help
2021-06-03T19:18:10.3170624Z *** installing help indices
2021-06-03T19:18:10.3341010Z ** building package indices
2021-06-03T19:18:10.5165094Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:10.6868251Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:10.7037549Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:10.8700946Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:10.8714104Z * DONE (bitops)
2021-06-03T19:18:11.3746604Z * installing *source* package ‘GenomeInfoDbData’ ...
2021-06-03T19:18:11.3748108Z ** using staged installation
2021-06-03T19:18:11.3831962Z ** data
2021-06-03T19:18:11.3945908Z ** inst
2021-06-03T19:18:11.3952355Z ** help
2021-06-03T19:18:11.4035732Z *** installing help indices
2021-06-03T19:18:11.4168113Z ** building package indices
2021-06-03T19:18:11.5969353Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:11.7627283Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:11.9249488Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:11.9254631Z * DONE (GenomeInfoDbData)
2021-06-03T19:18:12.1721219Z * installing *source* package ‘zlibbioc’ ...
2021-06-03T19:18:12.1722908Z ** using staged installation
2021-06-03T19:18:12.2956536Z configure: creating ./config.status
2021-06-03T19:18:12.3660409Z config.status: creating src/Makevars
2021-06-03T19:18:12.4078049Z ** libs
2021-06-03T19:18:12.4122566Z mkdir -p "/home/runner/work/_temp/Library/00LOCK-zlibbioc/00new/zlibbioc/include"
2021-06-03T19:18:12.4168783Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c R_init_zlibbioc.c -o R_init_zlibbioc.o
2021-06-03T19:18:12.4314536Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zlibbioc.so R_init_zlibbioc.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:12.4439839Z installing to /home/runner/work/_temp/Library/00LOCK-zlibbioc/00new/zlibbioc/libs
2021-06-03T19:18:12.4450575Z ** R
2021-06-03T19:18:12.4470484Z ** inst
2021-06-03T19:18:12.4479589Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:12.6484147Z ** help
2021-06-03T19:18:12.6591186Z *** installing help indices
2021-06-03T19:18:12.6779752Z ** building package indices
2021-06-03T19:18:12.8516892Z ** installing vignettes
2021-06-03T19:18:12.8561280Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:13.0243870Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:13.0414357Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:13.2052036Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:13.2058294Z * DONE (zlibbioc)
2021-06-03T19:18:13.4420899Z * installing *source* package ‘BiocManager’ ...
2021-06-03T19:18:13.4447837Z ** package ‘BiocManager’ successfully unpacked and MD5 sums checked
2021-06-03T19:18:13.4449069Z ** using staged installation
2021-06-03T19:18:13.4564508Z ** R
2021-06-03T19:18:13.4628889Z ** inst
2021-06-03T19:18:13.4644288Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:14.0382559Z ** help
2021-06-03T19:18:14.0641233Z *** installing help indices
2021-06-03T19:18:14.0891893Z ** building package indices
2021-06-03T19:18:14.2749692Z ** installing vignettes
2021-06-03T19:18:14.2799940Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:14.6127106Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:14.9478540Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:14.9479306Z * DONE (BiocManager)
2021-06-03T19:18:15.1824430Z * installing *source* package ‘htmltools’ ...
2021-06-03T19:18:15.1846695Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked
2021-06-03T19:18:15.1847758Z ** using staged installation
2021-06-03T19:18:15.1987067Z ** libs
2021-06-03T19:18:15.2030697Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c init.c -o init.o
2021-06-03T19:18:15.2471178Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c template.c -o template.o
2021-06-03T19:18:15.3490788Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:15.3697669Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs
2021-06-03T19:18:15.3707790Z ** R
2021-06-03T19:18:15.3831218Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:16.6893734Z ** help
2021-06-03T19:18:16.7648242Z *** installing help indices
2021-06-03T19:18:16.8212525Z ** building package indices
2021-06-03T19:18:17.0481715Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:17.2387362Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:17.2555910Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:17.4689920Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:17.4705096Z * DONE (htmltools)
2021-06-03T19:18:17.7926949Z * installing *source* package ‘S4Vectors’ ...
2021-06-03T19:18:17.7928571Z ** using staged installation
2021-06-03T19:18:17.8064547Z ** libs
2021-06-03T19:18:17.8115887Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c AEbufs.c -o AEbufs.o
2021-06-03T19:18:18.2437358Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c DataFrame_class.c -o DataFrame_class.o
2021-06-03T19:18:18.2858804Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Hits_class.c -o Hits_class.o
2021-06-03T19:18:18.4708399Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c LLint_class.c -o LLint_class.o
2021-06-03T19:18:18.6937616Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c List_class.c -o List_class.o
2021-06-03T19:18:18.7361882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c R_init_S4Vectors.c -o R_init_S4Vectors.o
2021-06-03T19:18:18.7995341Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Rle_class.c -o Rle_class.o
2021-06-03T19:18:19.1796618Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Rle_utils.c -o Rle_utils.o
2021-06-03T19:18:19.4710408Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c SEXP_utils.c -o SEXP_utils.o
2021-06-03T19:18:19.5093528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c SimpleList_class.c -o SimpleList_class.o
2021-06-03T19:18:19.5503813Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c anyMissing.c -o anyMissing.o
2021-06-03T19:18:19.6030021Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c character_utils.c -o character_utils.o
2021-06-03T19:18:19.6891976Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c eval_utils.c -o eval_utils.o
2021-06-03T19:18:19.7374935Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c hash_utils.c -o hash_utils.o
2021-06-03T19:18:19.7865684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c integer_utils.c -o integer_utils.o
2021-06-03T19:18:20.0962872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c logical_utils.c -o logical_utils.o
2021-06-03T19:18:20.1506463Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c map_ranges_to_runs.c -o map_ranges_to_runs.o
2021-06-03T19:18:20.3644065Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c raw_utils.c -o raw_utils.o
2021-06-03T19:18:20.4997150Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c safe_arithm.c -o safe_arithm.o
2021-06-03T19:18:20.5769550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sort_utils.c -o sort_utils.o
2021-06-03T19:18:20.9255766Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c subsetting_utils.c -o subsetting_utils.o
2021-06-03T19:18:21.0279085Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c vector_utils.c -o vector_utils.o
2021-06-03T19:18:21.0987976Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o S4Vectors.so AEbufs.o DataFrame_class.o Hits_class.o LLint_class.o List_class.o R_init_S4Vectors.o Rle_class.o Rle_utils.o SEXP_utils.o SimpleList_class.o anyMissing.o character_utils.o eval_utils.o hash_utils.o integer_utils.o logical_utils.o map_ranges_to_runs.o raw_utils.o safe_arithm.o sort_utils.o subsetting_utils.o vector_utils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:21.1300967Z installing to /home/runner/work/_temp/Library/00LOCK-S4Vectors/00new/S4Vectors/libs
2021-06-03T19:18:21.1318937Z ** R
2021-06-03T19:18:21.1769511Z ** inst
2021-06-03T19:18:21.1797039Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:33.3373231Z in method for ‘normalizeSingleBracketReplacementValue’ with signature ‘"List"’: no definition for class “List”
2021-06-03T19:18:33.3375231Z Creating a new generic function for ‘unname’ in package ‘S4Vectors’
2021-06-03T19:18:33.3376562Z Creating a new generic function for ‘expand.grid’ in package ‘S4Vectors’
2021-06-03T19:18:33.3377856Z Creating a new generic function for ‘findMatches’ in package ‘S4Vectors’
2021-06-03T19:18:33.3379204Z Creating a generic function for ‘setequal’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3380603Z in method for ‘coerce’ with signature ‘"Hits","DFrame"’: no definition for class “DFrame”
2021-06-03T19:18:33.3381985Z Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3383343Z Creating a generic function for ‘tabulate’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3384675Z Creating a generic function for ‘cov’ from package ‘stats’ in package ‘S4Vectors’
2021-06-03T19:18:33.3385986Z Creating a generic function for ‘cor’ from package ‘stats’ in package ‘S4Vectors’
2021-06-03T19:18:33.3387356Z Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘S4Vectors’
2021-06-03T19:18:33.3388734Z Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘S4Vectors’
2021-06-03T19:18:33.3390071Z Creating a generic function for ‘nchar’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3391406Z Creating a generic function for ‘substr’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3392757Z Creating a generic function for ‘substring’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3394836Z Creating a generic function for ‘chartr’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3396194Z Creating a generic function for ‘tolower’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3397461Z Creating a generic function for ‘toupper’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3398708Z Creating a generic function for ‘sub’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3399939Z Creating a generic function for ‘gsub’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3401432Z Creating a generic function for ‘nlevels’ from package ‘base’ in package ‘S4Vectors’
2021-06-03T19:18:33.3402779Z in method for ‘coerce’ with signature ‘"data.table","DFrame"’: no definition for class “data.table”
2021-06-03T19:18:33.3404169Z Creating a generic function for ‘complete.cases’ from package ‘stats’ in package ‘S4Vectors’
2021-06-03T19:18:33.3406162Z ** help
2021-06-03T19:18:33.5858765Z *** installing help indices
2021-06-03T19:18:33.7407435Z ** building package indices
2021-06-03T19:18:34.0366547Z ** installing vignettes
2021-06-03T19:18:34.0437686Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:34.8733341Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:34.8935433Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:35.9594642Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:35.9739965Z * DONE (S4Vectors)
2021-06-03T19:18:36.8367885Z * installing *source* package ‘MatrixGenerics’ ...
2021-06-03T19:18:36.8369262Z ** using staged installation
2021-06-03T19:18:36.8369885Z ** R
2021-06-03T19:18:36.8370362Z ** inst
2021-06-03T19:18:36.8371358Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:37.6217098Z ** help
2021-06-03T19:18:37.7573477Z *** installing help indices
2021-06-03T19:18:37.8409929Z ** building package indices
2021-06-03T19:18:38.1031748Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:38.3432653Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:39.3373094Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:39.3374460Z checking for curl-config... /usr/bin/curl-config
2021-06-03T19:18:39.3376372Z * DONE (MatrixGenerics)
2021-06-03T19:18:39.3376863Z checking for gcc... gcc
2021-06-03T19:18:39.3378225Z * installing *source* package ‘RCurl’ ...
2021-06-03T19:18:39.3378901Z checking whether the C compiler works... yes
2021-06-03T19:18:39.3380423Z ** package ‘RCurl’ successfully unpacked and MD5 sums checked
2021-06-03T19:18:39.3381202Z checking for C compiler default output file name... a.out
2021-06-03T19:18:39.3382401Z ** using staged installation
2021-06-03T19:18:39.3383000Z checking for suffix of executables... 
2021-06-03T19:18:39.3383821Z checking whether we are cross compiling... no
2021-06-03T19:18:39.3384584Z checking for suffix of object files... o
2021-06-03T19:18:39.3385375Z checking whether we are using the GNU C compiler... yes
2021-06-03T19:18:39.3386291Z checking whether gcc accepts -g... yes
2021-06-03T19:18:39.3387080Z checking for gcc option to accept ISO C89... none needed
2021-06-03T19:18:39.3388045Z checking how to run the C preprocessor... gcc -E
2021-06-03T19:18:39.3644983Z Version has a libidn field
2021-06-03T19:18:39.4035833Z Version has CURLOPT_URL
2021-06-03T19:18:39.4408427Z Version has CURLINFO_EFFECTIVE_URL
2021-06-03T19:18:39.4782416Z Version has CURLINFO_RESPONSE_CODE
2021-06-03T19:18:39.5154078Z Version has CURLINFO_TOTAL_TIME
2021-06-03T19:18:39.5526642Z Version has CURLINFO_NAMELOOKUP_TIME
2021-06-03T19:18:39.5895928Z Version has CURLINFO_CONNECT_TIME
2021-06-03T19:18:39.6257611Z Version has CURLINFO_PRETRANSFER_TIME
2021-06-03T19:18:39.6620537Z Version has CURLINFO_SIZE_UPLOAD
2021-06-03T19:18:39.6976414Z Version has CURLINFO_SIZE_DOWNLOAD
2021-06-03T19:18:39.7344820Z Version has CURLINFO_SPEED_DOWNLOAD
2021-06-03T19:18:39.7702570Z Version has CURLINFO_SPEED_UPLOAD
2021-06-03T19:18:39.8057235Z Version has CURLINFO_HEADER_SIZE
2021-06-03T19:18:39.8416216Z Version has CURLINFO_REQUEST_SIZE
2021-06-03T19:18:39.8776053Z Version has CURLINFO_SSL_VERIFYRESULT
2021-06-03T19:18:39.9133252Z Version has CURLINFO_FILETIME
2021-06-03T19:18:39.9487988Z Version has CURLINFO_CONTENT_LENGTH_DOWNLOAD
2021-06-03T19:18:39.9844906Z Version has CURLINFO_CONTENT_LENGTH_UPLOAD
2021-06-03T19:18:40.0194455Z Version has CURLINFO_STARTTRANSFER_TIME
2021-06-03T19:18:40.0548981Z Version has CURLINFO_CONTENT_TYPE
2021-06-03T19:18:40.0914794Z Version has CURLINFO_REDIRECT_TIME
2021-06-03T19:18:40.1265487Z Version has CURLINFO_REDIRECT_COUNT
2021-06-03T19:18:40.1625659Z Version has CURLINFO_PRIVATE
2021-06-03T19:18:40.1982045Z Version has CURLINFO_HTTP_CONNECTCODE
2021-06-03T19:18:40.2338673Z Version has CURLINFO_HTTPAUTH_AVAIL
2021-06-03T19:18:40.2695699Z Version has CURLINFO_PROXYAUTH_AVAIL
2021-06-03T19:18:40.3057453Z Version has CURLINFO_OS_ERRNO
2021-06-03T19:18:40.3420316Z Version has CURLINFO_NUM_CONNECTS
2021-06-03T19:18:40.3779608Z Version has CURLINFO_SSL_ENGINES
2021-06-03T19:18:40.4133629Z Version has CURLINFO_COOKIELIST
2021-06-03T19:18:40.4495763Z Version has CURLINFO_LASTSOCKET
2021-06-03T19:18:40.4862113Z Version has CURLINFO_FTP_ENTRY_PATH
2021-06-03T19:18:40.5218666Z Version has CURLINFO_REDIRECT_URL
2021-06-03T19:18:40.5580514Z Version has CURLINFO_PRIMARY_IP
2021-06-03T19:18:40.5943663Z Version has CURLINFO_APPCONNECT_TIME
2021-06-03T19:18:40.6301370Z Version has CURLINFO_CERTINFO
2021-06-03T19:18:40.6662598Z Version has CURLINFO_CONDITION_UNMET
2021-06-03T19:18:40.7029961Z Version has CURLOPT_WRITEDATA
2021-06-03T19:18:40.7389781Z Version has CURLOPT_KEYPASSWD
2021-06-03T19:18:40.7754219Z Version has CURLOPT_DIRLISTONLY
2021-06-03T19:18:40.8121075Z Version has CURLOPT_APPEND
2021-06-03T19:18:40.8481634Z Version has CURLOPT_KRBLEVEL
2021-06-03T19:18:40.8850757Z Version has CURLOPT_USE_SSL
2021-06-03T19:18:40.9210030Z Version has CURLOPT_TIMEOUT_MS
2021-06-03T19:18:40.9570951Z Version has CURLOPT_CONNECTTIMEOUT_MS
2021-06-03T19:18:40.9938200Z Version has CURLOPT_HTTP_TRANSFER_DECODING
2021-06-03T19:18:41.0313001Z Version has CURLOPT_HTTP_CONTENT_DECODING
2021-06-03T19:18:41.0693297Z Version has CURLOPT_NEW_FILE_PERMS
2021-06-03T19:18:41.1065674Z Version has CURLOPT_NEW_DIRECTORY_PERMS
2021-06-03T19:18:41.1433904Z Version has CURLOPT_POSTREDIR
2021-06-03T19:18:41.1804245Z Version has CURLOPT_OPENSOCKETFUNCTION
2021-06-03T19:18:41.2165892Z Version has CURLOPT_OPENSOCKETDATA
2021-06-03T19:18:41.2532727Z Version has CURLOPT_COPYPOSTFIELDS
2021-06-03T19:18:41.2897581Z Version has CURLOPT_PROXY_TRANSFER_MODE
2021-06-03T19:18:41.3264614Z Version has CURLOPT_SEEKFUNCTION
2021-06-03T19:18:41.3632077Z Version has CURLOPT_SEEKDATA
2021-06-03T19:18:41.3998021Z Version has CURLOPT_CRLFILE
2021-06-03T19:18:41.4369890Z Version has CURLOPT_ISSUERCERT
2021-06-03T19:18:41.4739319Z Version has CURLOPT_ADDRESS_SCOPE
2021-06-03T19:18:41.5115337Z Version has CURLOPT_CERTINFO
2021-06-03T19:18:41.5488895Z Version has CURLOPT_USERNAME
2021-06-03T19:18:41.5863250Z Version has CURLOPT_PASSWORD
2021-06-03T19:18:41.6229192Z Version has CURLOPT_PROXYUSERNAME
2021-06-03T19:18:41.6602507Z Version has CURLOPT_PROXYPASSWORD
2021-06-03T19:18:41.6973208Z Version has CURLOPT_SSH_HOST_PUBLIC_KEY_MD5
2021-06-03T19:18:41.7348034Z Version has CURLOPT_NOPROXY
2021-06-03T19:18:41.7720889Z Version has CURLOPT_TFTP_BLKSIZE
2021-06-03T19:18:41.8089075Z Version has CURLOPT_SOCKS5_GSSAPI_SERVICE
2021-06-03T19:18:41.8461329Z Version has CURLOPT_SOCKS5_GSSAPI_NEC
2021-06-03T19:18:41.8830062Z Version has CURLOPT_PROTOCOLS
2021-06-03T19:18:41.9202359Z Version has CURLOPT_REDIR_PROTOCOLS
2021-06-03T19:18:41.9572791Z Version has CURLOPT_SSH_AUTH_TYPES
2021-06-03T19:18:41.9948248Z Version has CURLOPT_SSH_PUBLIC_KEYFILE
2021-06-03T19:18:42.0316770Z Version has CURLOPT_SSH_PRIVATE_KEYFILE
2021-06-03T19:18:42.0685792Z Version has CURLOPT_FTP_SSL_CCC
2021-06-03T19:18:42.1069060Z Version has CURLOPT_COOKIELIST
2021-06-03T19:18:42.1441910Z Version has CURLOPT_IGNORE_CONTENT_LENGTH
2021-06-03T19:18:42.1813369Z Version has CURLOPT_FTP_SKIP_PASV_IP
2021-06-03T19:18:42.2200696Z Version has CURLOPT_FTP_FILEMETHOD
2021-06-03T19:18:42.2572431Z Version has CURLOPT_LOCALPORT
2021-06-03T19:18:42.2949296Z Version has CURLOPT_LOCALPORTRANGE
2021-06-03T19:18:42.3327370Z Version has CURLOPT_CONNECT_ONLY
2021-06-03T19:18:42.3702949Z Version has CURLOPT_CONV_FROM_NETWORK_FUNCTION
2021-06-03T19:18:42.4076794Z Version has CURLOPT_CONV_TO_NETWORK_FUNCTION
2021-06-03T19:18:42.4471634Z Version has CURLOPT_CONV_FROM_UTF8_FUNCTION
2021-06-03T19:18:42.4848899Z Version has CURLOPT_MAX_SEND_SPEED_LARGE
2021-06-03T19:18:42.5217947Z Version has CURLOPT_MAX_RECV_SPEED_LARGE
2021-06-03T19:18:42.5587291Z Version has CURLOPT_FTP_ALTERNATIVE_TO_USER
2021-06-03T19:18:42.5961795Z Version has CURLOPT_SOCKOPTFUNCTION
2021-06-03T19:18:42.6337611Z Version has CURLOPT_SOCKOPTDATA
2021-06-03T19:18:42.6702590Z Version has CURLOPT_SSL_SESSIONID_CACHE
2021-06-03T19:18:42.6753102Z libcurl version: libcurl 7.68.0
2021-06-03T19:18:42.6934314Z configure: creating ./config.status
2021-06-03T19:18:42.7693642Z config.status: creating src/Makevars
2021-06-03T19:18:42.8134231Z ** libs
2021-06-03T19:18:42.8218472Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c base64.c -o base64.o
2021-06-03T19:18:42.8962392Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c curl.c -o curl.o
2021-06-03T19:18:43.4347018Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c curlInit.c -o curlInit.o
2021-06-03T19:18:43.4889040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c curl_base64.c -o curl_base64.o
2021-06-03T19:18:43.5892139Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c enums.c -o enums.o
2021-06-03T19:18:43.6534577Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c json.c -o json.o
2021-06-03T19:18:43.7442869Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c memoryManagement.c -o memoryManagement.o
2021-06-03T19:18:43.8202605Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -DHAVE_LIBIDN_FIELD=1 -DHAVE_CURLOPT_URL=1 -DHAVE_CURLINFO_EFFECTIVE_URL=1 -DHAVE_CURLINFO_RESPONSE_CODE=1 -DHAVE_CURLINFO_TOTAL_TIME=1 -DHAVE_CURLINFO_NAMELOOKUP_TIME=1 -DHAVE_CURLINFO_CONNECT_TIME=1 -DHAVE_CURLINFO_PRETRANSFER_TIME=1 -DHAVE_CURLINFO_SIZE_UPLOAD=1 -DHAVE_CURLINFO_SIZE_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_DOWNLOAD=1 -DHAVE_CURLINFO_SPEED_UPLOAD=1 -DHAVE_CURLINFO_HEADER_SIZE=1 -DHAVE_CURLINFO_REQUEST_SIZE=1 -DHAVE_CURLINFO_SSL_VERIFYRESULT=1 -DHAVE_CURLINFO_FILETIME=1 -DHAVE_CURLINFO_CONTENT_LENGTH_DOWNLOAD=1 -DHAVE_CURLINFO_CONTENT_LENGTH_UPLOAD=1 -DHAVE_CURLINFO_STARTTRANSFER_TIME=1 -DHAVE_CURLINFO_CONTENT_TYPE=1 -DHAVE_CURLINFO_REDIRECT_TIME=1 -DHAVE_CURLINFO_REDIRECT_COUNT=1 -DHAVE_CURLINFO_PRIVATE=1 -DHAVE_CURLINFO_HTTP_CONNECTCODE=1 -DHAVE_CURLINFO_HTTPAUTH_AVAIL=1 -DHAVE_CURLINFO_PROXYAUTH_AVAIL=1 -DHAVE_CURLINFO_OS_ERRNO=1 -DHAVE_CURLINFO_NUM_CONNECTS=1 -DHAVE_CURLINFO_SSL_ENGINES=1 -DHAVE_CURLINFO_COOKIELIST=1 -DHAVE_CURLINFO_LASTSOCKET=1 -DHAVE_CURLINFO_FTP_ENTRY_PATH=1 -DHAVE_CURLINFO_REDIRECT_URL=1 -DHAVE_CURLINFO_PRIMARY_IP=1 -DHAVE_CURLINFO_APPCONNECT_TIME=1 -DHAVE_CURLINFO_CERTINFO=1 -DHAVE_CURLINFO_CONDITION_UNMET=1 -DHAVE_CURLOPT_WRITEDATA=1 -DHAVE_CURLOPT_KEYPASSWD=1 -DHAVE_CURLOPT_DIRLISTONLY=1 -DHAVE_CURLOPT_APPEND=1 -DHAVE_CURLOPT_KRBLEVEL=1 -DHAVE_CURLOPT_USE_SSL=1 -DHAVE_CURLOPT_TIMEOUT_MS=1 -DHAVE_CURLOPT_CONNECTTIMEOUT_MS=1 -DHAVE_CURLOPT_HTTP_TRANSFER_DECODING=1 -DHAVE_CURLOPT_HTTP_CONTENT_DECODING=1 -DHAVE_CURLOPT_NEW_FILE_PERMS=1 -DHAVE_CURLOPT_NEW_DIRECTORY_PERMS=1 -DHAVE_CURLOPT_POSTREDIR=1 -DHAVE_CURLOPT_OPENSOCKETFUNCTION=1 -DHAVE_CURLOPT_OPENSOCKETDATA=1 -DHAVE_CURLOPT_COPYPOSTFIELDS=1 -DHAVE_CURLOPT_PROXY_TRANSFER_MODE=1 -DHAVE_CURLOPT_SEEKFUNCTION=1 -DHAVE_CURLOPT_SEEKDATA=1 -DHAVE_CURLOPT_CRLFILE=1 -DHAVE_CURLOPT_ISSUERCERT=1 -DHAVE_CURLOPT_ADDRESS_SCOPE=1 -DHAVE_CURLOPT_CERTINFO=1 -DHAVE_CURLOPT_USERNAME=1 -DHAVE_CURLOPT_PASSWORD=1 -DHAVE_CURLOPT_PROXYUSERNAME=1 -DHAVE_CURLOPT_PROXYPASSWORD=1 -DHAVE_CURLOPT_SSH_HOST_PUBLIC_KEY_MD5=1 -DHAVE_CURLOPT_NOPROXY=1 -DHAVE_CURLOPT_TFTP_BLKSIZE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_SERVICE=1 -DHAVE_CURLOPT_SOCKS5_GSSAPI_NEC=1 -DHAVE_CURLOPT_PROTOCOLS=1 -DHAVE_CURLOPT_REDIR_PROTOCOLS=1 -DHAVE_CURLOPT_SSH_AUTH_TYPES=1 -DHAVE_CURLOPT_SSH_PUBLIC_KEYFILE=1 -DHAVE_CURLOPT_SSH_PRIVATE_KEYFILE=1 -DHAVE_CURLOPT_FTP_SSL_CCC=1 -DHAVE_CURLOPT_COOKIELIST=1 -DHAVE_CURLOPT_IGNORE_CONTENT_LENGTH=1 -DHAVE_CURLOPT_FTP_SKIP_PASV_IP=1 -DHAVE_CURLOPT_FTP_FILEMETHOD=1 -DHAVE_CURLOPT_LOCALPORT=1 -DHAVE_CURLOPT_LOCALPORTRANGE=1 -DHAVE_CURLOPT_CONNECT_ONLY=1 -DHAVE_CURLOPT_CONV_FROM_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_TO_NETWORK_FUNCTION=1 -DHAVE_CURLOPT_CONV_FROM_UTF8_FUNCTION=1 -DHAVE_CURLOPT_MAX_SEND_SPEED_LARGE=1 -DHAVE_CURLOPT_MAX_RECV_SPEED_LARGE=1 -DHAVE_CURLOPT_FTP_ALTERNATIVE_TO_USER=1 -DHAVE_CURLOPT_SOCKOPTFUNCTION=1 -DHAVE_CURLOPT_SOCKOPTDATA=1 -DHAVE_CURLOPT_SSL_SESSIONID_CACHE=1 -I/usr/include/libxml2  -I/usr/local/include   -fpic  -g -O2  -c myUTF8.c -o myUTF8.o
2021-06-03T19:18:43.9536522Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RCurl.so base64.o curl.o curlInit.o curl_base64.o enums.o json.o memoryManagement.o myUTF8.o -lcurl -lxml2 -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:43.9829048Z installing to /home/runner/work/_temp/Library/00LOCK-RCurl/00new/RCurl/libs
2021-06-03T19:18:43.9843609Z ** R
2021-06-03T19:18:43.9973803Z ** data
2021-06-03T19:18:43.9977383Z ** inst
2021-06-03T19:18:44.0027542Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:47.1685357Z ** help
2021-06-03T19:18:47.2900149Z *** installing help indices
2021-06-03T19:18:47.3712620Z ** building package indices
2021-06-03T19:18:47.6296976Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:47.9129739Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:47.9300014Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:48.2657796Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:48.2707860Z * DONE (RCurl)
2021-06-03T19:18:48.6652357Z * installing *source* package ‘Biobase’ ...
2021-06-03T19:18:48.6653802Z ** using staged installation
2021-06-03T19:18:48.6776643Z ** libs
2021-06-03T19:18:48.6824344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c Rinit.c -o Rinit.o
2021-06-03T19:18:48.7207972Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c anyMissing.c -o anyMissing.o
2021-06-03T19:18:48.7744819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c envir.c -o envir.o
2021-06-03T19:18:48.8486834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c matchpt.c -o matchpt.o
2021-06-03T19:18:48.9079876Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c rowMedians.c -o rowMedians.o
2021-06-03T19:18:49.0446782Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG   -I/usr/local/include   -fpic  -g -O2  -c sublist_extract.c -o sublist_extract.o
2021-06-03T19:18:49.1338251Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Biobase.so Rinit.o anyMissing.o envir.o matchpt.o rowMedians.o sublist_extract.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:18:49.1566123Z installing to /home/runner/work/_temp/Library/00LOCK-Biobase/00new/Biobase/libs
2021-06-03T19:18:49.1577590Z ** R
2021-06-03T19:18:49.1701130Z ** data
2021-06-03T19:18:49.1711697Z ** inst
2021-06-03T19:18:49.1777999Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:53.5140372Z ** help
2021-06-03T19:18:53.7441982Z *** installing help indices
2021-06-03T19:18:53.9222723Z ** building package indices
2021-06-03T19:18:54.6412224Z ** installing vignettes
2021-06-03T19:18:54.6469822Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:18:55.1227320Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:18:55.1401177Z ** testing if installed package can be loaded from final location
2021-06-03T19:18:55.6773690Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:18:55.6828579Z * DONE (Biobase)
2021-06-03T19:18:56.4201007Z * installing *source* package ‘rmarkdown’ ...
2021-06-03T19:18:56.4473859Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked
2021-06-03T19:18:56.4474943Z ** using staged installation
2021-06-03T19:18:56.4731108Z ** R
2021-06-03T19:18:56.5100341Z ** inst
2021-06-03T19:18:56.5312036Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:18:59.5655529Z ** help
2021-06-03T19:18:59.7467227Z *** installing help indices
2021-06-03T19:18:59.8888894Z *** copying figures
2021-06-03T19:18:59.8890550Z ** building package indices
2021-06-03T19:19:00.1642289Z ** installing vignettes
2021-06-03T19:19:00.1714002Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:19:00.3995240Z ** testing if installed package can be loaded from final location
2021-06-03T19:19:00.6858916Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:19:00.6913637Z * DONE (rmarkdown)
2021-06-03T19:19:01.0188898Z * installing *source* package ‘IRanges’ ...
2021-06-03T19:19:01.0190341Z ** using staged installation
2021-06-03T19:19:01.0336245Z ** libs
2021-06-03T19:19:01.0392352Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c CompressedAtomicList_utils.c -o CompressedAtomicList_utils.o
2021-06-03T19:19:01.3617217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c CompressedIRangesList_class.c -o CompressedIRangesList_class.o
2021-06-03T19:19:01.4571275Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c CompressedList_class.c -o CompressedList_class.o
2021-06-03T19:19:01.5138390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c Grouping_class.c -o Grouping_class.o
2021-06-03T19:19:01.5939113Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c IPosRanges_comparison.c -o IPosRanges_comparison.o
2021-06-03T19:19:01.6576146Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c IRanges_class.c -o IRanges_class.o
2021-06-03T19:19:01.7916296Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c IRanges_constructor.c -o IRanges_constructor.o
2021-06-03T19:19:01.9172060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c NCList.c -o NCList.o
2021-06-03T19:19:02.2048042Z NCList.c: In function ‘C_print_NCListAsINTSXP’:
2021-06-03T19:19:02.2050218Z NCList.c:674:23: warning: ‘%d’ directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=]
2021-06-03T19:19:02.2051718Z   674 |   sprintf(format, "%c0%d%c", '%', max_digits, 'd');
2021-06-03T19:19:02.2052503Z       |                       ^~
2021-06-03T19:19:02.2054159Z NCList.c:674:19: note: directive argument in the range [-2147483647, 2147483647]
2021-06-03T19:19:02.2055086Z   674 |   sprintf(format, "%c0%d%c", '%', max_digits, 'd');
2021-06-03T19:19:02.2055577Z       |                   ^~~~~~~~~
2021-06-03T19:19:02.2056172Z In file included from /usr/include/stdio.h:867,
2021-06-03T19:19:02.2056907Z                  from /opt/R/devel/lib/R/include/Rinternals.h:39,
2021-06-03T19:19:02.2057609Z                  from /opt/R/devel/lib/R/include/Rdefines.h:40,
2021-06-03T19:19:02.2058474Z                  from /home/runner/work/_temp/Library/S4Vectors/include/S4Vectors_defines.h:18,
2021-06-03T19:19:02.2059258Z                  from ../inst/include/IRanges_defines.h:18,
2021-06-03T19:19:02.2059816Z                  from IRanges.h:1,
2021-06-03T19:19:02.2060285Z                  from NCList.c:5:
2021-06-03T19:19:02.2061535Z /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 15 bytes into a destination of size 10
2021-06-03T19:19:02.2062892Z    36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
2021-06-03T19:19:02.2063517Z       |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-06-03T19:19:02.2064009Z    37 |       __bos (__s), __fmt, __va_arg_pack ());
2021-06-03T19:19:02.2064494Z       |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2021-06-03T19:19:02.2819819Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c R_init_IRanges.c -o R_init_IRanges.o
2021-06-03T19:19:02.3290698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c Ranges_class.c -o Ranges_class.o
2021-06-03T19:19:02.3831950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c RleViews_utils.c -o RleViews_utils.o
2021-06-03T19:19:02.7378190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
2021-06-03T19:19:03.0937831Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c SimpleIRangesList_class.c -o SimpleIRangesList_class.o
2021-06-03T19:19:03.1632017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c coverage_methods.c -o coverage_methods.o
2021-06-03T19:19:03.4344455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c extractListFragments.c -o extractListFragments.o
2021-06-03T19:19:03.4927945Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c inter_range_methods.c -o inter_range_methods.o
2021-06-03T19:19:03.6623840Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o IRanges.so CompressedAtomicList_utils.o CompressedIRangesList_class.o CompressedList_class.o Grouping_class.o IPosRanges_comparison.o IRanges_class.o IRanges_constructor.o NCList.o R_init_IRanges.o Ranges_class.o RleViews_utils.o S4Vectors_stubs.o SimpleIRangesList_class.o coverage_methods.o extractListFragments.o inter_range_methods.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:19:03.6928066Z installing to /home/runner/work/_temp/Library/00LOCK-IRanges/00new/IRanges/libs
2021-06-03T19:19:03.6930267Z ** R
2021-06-03T19:19:03.7385713Z ** inst
2021-06-03T19:19:03.7413737Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:19:42.1172545Z Creating a generic function for ‘drop’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1174122Z ** help
2021-06-03T19:19:42.1175053Z Creating a generic function for ‘runmed’ from package ‘stats’ in package ‘IRanges’
2021-06-03T19:19:42.1176470Z Creating a generic function for ‘chartr’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1177732Z Creating a generic function for ‘toupper’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1178981Z Creating a generic function for ‘tolower’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1180216Z Creating a generic function for ‘sub’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1181444Z Creating a generic function for ‘gsub’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1182698Z Creating a generic function for ‘startsWith’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1183983Z Creating a generic function for ‘endsWith’ from package ‘base’ in package ‘IRanges’
2021-06-03T19:19:42.1185268Z Creating a generic function for ‘smoothEnds’ from package ‘stats’ in package ‘IRanges’
2021-06-03T19:19:42.4310295Z *** installing help indices
2021-06-03T19:19:42.6104022Z ** building package indices
2021-06-03T19:19:42.9286531Z ** installing vignettes
2021-06-03T19:19:42.9328007Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:19:44.3715595Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:19:44.3889132Z ** testing if installed package can be loaded from final location
2021-06-03T19:19:46.1518110Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:19:46.1734172Z * DONE (IRanges)
2021-06-03T19:19:46.4183102Z * installing *source* package ‘XVector’ ...
2021-06-03T19:19:46.4184547Z ** using staged installation
2021-06-03T19:19:46.4321243Z ** libs
2021-06-03T19:19:46.4380866Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c IRanges_stubs.c -o IRanges_stubs.o
2021-06-03T19:19:46.5641410Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
2021-06-03T19:19:46.7261000Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c RDS_random_access.c -o RDS_random_access.o
2021-06-03T19:19:46.9409489Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c R_init_XVector.c -o R_init_XVector.o
2021-06-03T19:19:46.9923905Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
2021-06-03T19:19:47.3467408Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c SharedDouble_class.c -o SharedDouble_class.o
2021-06-03T19:19:47.4139887Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c SharedInteger_class.c -o SharedInteger_class.o
2021-06-03T19:19:47.4791262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c SharedRaw_class.c -o SharedRaw_class.o
2021-06-03T19:19:47.6198620Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c SharedVector_class.c -o SharedVector_class.o
2021-06-03T19:19:47.7554795Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c XDouble_class.c -o XDouble_class.o
2021-06-03T19:19:47.8002345Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c XInteger_class.c -o XInteger_class.o
2021-06-03T19:19:47.8459135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c XRawList_comparison.c -o XRawList_comparison.o
2021-06-03T19:19:47.9987342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c XRaw_class.c -o XRaw_class.o
2021-06-03T19:19:48.0577946Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c XVectorList_class.c -o XVectorList_class.o
2021-06-03T19:19:48.2142029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c XVector_class.c -o XVector_class.o
2021-06-03T19:19:48.2676504Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c io_utils.c -o io_utils.o
2021-06-03T19:19:48.4005436Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c slice_methods.c -o slice_methods.o
2021-06-03T19:19:48.4802501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c vector_copy.c -o vector_copy.o
2021-06-03T19:19:48.5786973Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c view_summarization_methods.c -o view_summarization_methods.o
2021-06-03T19:19:48.7513598Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o RDS_random_access.o R_init_XVector.o S4Vectors_stubs.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XDouble_class.o XInteger_class.o XRawList_comparison.o XRaw_class.o XVectorList_class.o XVector_class.o io_utils.o slice_methods.o vector_copy.o view_summarization_methods.o -lz -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:19:48.7848149Z installing to /home/runner/work/_temp/Library/00LOCK-XVector/00new/XVector/libs
2021-06-03T19:19:48.7849573Z ** R
2021-06-03T19:19:48.7985056Z ** inst
2021-06-03T19:19:48.7995314Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:19:53.8001794Z ** help
2021-06-03T19:19:53.8524000Z *** installing help indices
2021-06-03T19:19:53.8908649Z ** building package indices
2021-06-03T19:19:54.1011274Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:19:55.7125987Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:19:55.7301190Z ** testing if installed package can be loaded from final location
2021-06-03T19:19:57.4337318Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:19:57.4409762Z * DONE (XVector)
2021-06-03T19:19:57.8667281Z * installing *source* package ‘GenomeInfoDb’ ...
2021-06-03T19:19:57.8669846Z ** using staged installation
2021-06-03T19:19:57.8822809Z ** R
2021-06-03T19:19:57.9058493Z ** inst
2021-06-03T19:19:57.9167451Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:20:02.9890806Z ** help
2021-06-03T19:20:03.0730857Z *** installing help indices
2021-06-03T19:20:03.1247009Z ** building package indices
2021-06-03T19:20:03.3451684Z ** installing vignettes
2021-06-03T19:20:03.3507753Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:20:04.9998200Z ** testing if installed package can be loaded from final location
2021-06-03T19:20:06.7406727Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:20:06.7472942Z * DONE (GenomeInfoDb)
2021-06-03T19:20:07.0747841Z * installing *source* package ‘bookdown’ ...
2021-06-03T19:20:07.0812489Z ** package ‘bookdown’ successfully unpacked and MD5 sums checked
2021-06-03T19:20:07.0813743Z ** using staged installation
2021-06-03T19:20:07.1050202Z ** R
2021-06-03T19:20:07.1210771Z ** inst
2021-06-03T19:20:07.1267740Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:20:08.8398281Z ** help
2021-06-03T19:20:08.8906172Z *** installing help indices
2021-06-03T19:20:08.9261637Z *** copying figures
2021-06-03T19:20:08.9263053Z ** building package indices
2021-06-03T19:20:09.1307924Z ** installing vignettes
2021-06-03T19:20:09.1369730Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:20:09.3314288Z ** testing if installed package can be loaded from final location
2021-06-03T19:20:09.5555104Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:20:09.5581626Z * DONE (bookdown)
2021-06-03T19:20:09.8749560Z * installing *source* package ‘DelayedArray’ ...
2021-06-03T19:20:09.8750986Z ** using staged installation
2021-06-03T19:20:09.8927060Z ** libs
2021-06-03T19:20:09.8979753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c R_init_DelayedArray.c -o R_init_DelayedArray.o
2021-06-03T19:20:09.9362060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
2021-06-03T19:20:10.2902965Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c abind.c -o abind.o
2021-06-03T19:20:10.3539059Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c array_selection.c -o array_selection.o
2021-06-03T19:20:10.4841239Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c compress_atomic_vector.c -o compress_atomic_vector.o
2021-06-03T19:20:10.5350364Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I/usr/local/include   -fpic  -g -O2  -c sparseMatrix_utils.c -o sparseMatrix_utils.o
2021-06-03T19:20:10.6753384Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o DelayedArray.so R_init_DelayedArray.o S4Vectors_stubs.o abind.o array_selection.o compress_atomic_vector.o sparseMatrix_utils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:20:10.7007238Z installing to /home/runner/work/_temp/Library/00LOCK-DelayedArray/00new/DelayedArray/libs
2021-06-03T19:20:10.7009200Z ** R
2021-06-03T19:20:10.7402793Z ** inst
2021-06-03T19:20:10.7431273Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:20:25.2902469Z Creating a new generic function for ‘rowsum’ in package ‘DelayedArray’
2021-06-03T19:20:25.2904099Z Creating a new generic function for ‘aperm’ in package ‘DelayedArray’
2021-06-03T19:20:25.2905391Z Creating a new generic function for ‘apply’ in package ‘DelayedArray’
2021-06-03T19:20:25.2906667Z Creating a new generic function for ‘sweep’ in package ‘DelayedArray’
2021-06-03T19:20:25.2907922Z Creating a new generic function for ‘scale’ in package ‘DelayedArray’
2021-06-03T19:20:25.2909259Z Creating a generic function for ‘dnorm’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2910697Z Creating a generic function for ‘pnorm’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2912089Z Creating a generic function for ‘qnorm’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2913469Z Creating a generic function for ‘dbinom’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2915078Z Creating a generic function for ‘pbinom’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2916526Z Creating a generic function for ‘qbinom’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2917922Z Creating a generic function for ‘dpois’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2919302Z Creating a generic function for ‘ppois’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2920712Z Creating a generic function for ‘qpois’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2922106Z Creating a generic function for ‘dlogis’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2924209Z Creating a generic function for ‘plogis’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2925746Z Creating a generic function for ‘qlogis’ from package ‘stats’ in package ‘DelayedArray’
2021-06-03T19:20:25.2928425Z ** help
2021-06-03T19:20:25.4882879Z *** installing help indices
2021-06-03T19:20:25.6291753Z ** building package indices
2021-06-03T19:20:25.9046650Z ** installing vignettes
2021-06-03T19:20:25.9092025Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:20:28.7918265Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:20:28.8088605Z ** testing if installed package can be loaded from final location
2021-06-03T19:20:32.0830144Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:20:32.1042085Z * DONE (DelayedArray)
2021-06-03T19:20:32.4448844Z * installing *source* package ‘GenomicRanges’ ...
2021-06-03T19:20:32.4450363Z ** using staged installation
2021-06-03T19:20:32.4656219Z ** libs
2021-06-03T19:20:32.4710322Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c IRanges_stubs.c -o IRanges_stubs.o
2021-06-03T19:20:32.5970587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
2021-06-03T19:20:32.6344101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
2021-06-03T19:20:32.9904368Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG  -I'/home/runner/work/_temp/Library/S4Vectors/include' -I'/home/runner/work/_temp/Library/IRanges/include' -I/usr/local/include   -fpic  -g -O2  -c transcript_utils.c -o transcript_utils.o
2021-06-03T19:20:33.0895539Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o GenomicRanges.so IRanges_stubs.o R_init_GenomicRanges.o S4Vectors_stubs.o transcript_utils.o -L/opt/R/devel/lib/R/lib -lR
2021-06-03T19:20:33.1128772Z installing to /home/runner/work/_temp/Library/00LOCK-GenomicRanges/00new/GenomicRanges/libs
2021-06-03T19:20:33.1141102Z ** R
2021-06-03T19:20:33.1390253Z ** inst
2021-06-03T19:20:33.1431318Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:20:43.8611498Z ** help
2021-06-03T19:20:44.0344130Z *** installing help indices
2021-06-03T19:20:44.1536421Z ** building package indices
2021-06-03T19:20:44.4166536Z ** installing vignettes
2021-06-03T19:20:44.4203622Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:20:46.4769822Z ** checking absolute paths in shared objects and dynamic libraries
2021-06-03T19:20:46.4938471Z ** testing if installed package can be loaded from final location
2021-06-03T19:20:48.7697290Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:20:48.7821651Z * DONE (GenomicRanges)
2021-06-03T19:20:49.0710128Z * installing *source* package ‘BiocStyle’ ...
2021-06-03T19:20:49.0711540Z ** using staged installation
2021-06-03T19:20:49.0850517Z ** R
2021-06-03T19:20:49.0926980Z ** inst
2021-06-03T19:20:49.0973540Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:20:49.8016640Z ** help
2021-06-03T19:20:49.8316528Z *** installing help indices
2021-06-03T19:20:49.8564912Z ** building package indices
2021-06-03T19:20:50.0486546Z ** installing vignettes
2021-06-03T19:20:50.0510187Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:20:50.2900847Z ** testing if installed package can be loaded from final location
2021-06-03T19:20:50.5330018Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:20:50.5343123Z * DONE (BiocStyle)
2021-06-03T19:20:50.8888492Z * installing *source* package ‘SummarizedExperiment’ ...
2021-06-03T19:20:50.8890005Z ** using staged installation
2021-06-03T19:20:50.9089055Z ** R
2021-06-03T19:20:50.9210689Z ** inst
2021-06-03T19:20:50.9266806Z ** byte-compile and prepare package for lazy loading
2021-06-03T19:21:01.1920986Z ** help
2021-06-03T19:21:01.2684857Z *** installing help indices
2021-06-03T19:21:01.3178551Z ** building package indices
2021-06-03T19:21:01.5366552Z ** installing vignettes
2021-06-03T19:21:01.5405338Z ** testing if installed package can be loaded from temporary location
2021-06-03T19:21:05.7810207Z ** testing if installed package can be loaded from final location
2021-06-03T19:21:10.2546094Z ** testing if installed package keeps a record of temporary installation path
2021-06-03T19:21:10.2705442Z * DONE (SummarizedExperiment)
2021-06-03T19:21:10.2806866Z 
2021-06-03T19:21:10.2807958Z The downloaded source packages are in
2021-06-03T19:21:10.2809430Z 	‘/tmp/Rtmpz90xjP/downloaded_packages’
2021-06-03T19:21:22.9220319Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install.
2021-06-03T19:21:22.9221291Z   Use `force = TRUE` to force installation
2021-06-03T19:21:22.9230788Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install.
2021-06-03T19:21:22.9231731Z   Use `force = TRUE` to force installation
2021-06-03T19:21:22.9353119Z ##[group]Run options(width = 100)
2021-06-03T19:21:22.9353619Z options(width = 100)
2021-06-03T19:21:22.9354151Z pkgs <- installed.packages()[, "Package"]
2021-06-03T19:21:22.9354797Z sessioninfo::session_info(pkgs, include_base = TRUE)
2021-06-03T19:21:22.9361366Z shell: /usr/local/bin/Rscript {0}
2021-06-03T19:21:22.9361754Z env:
2021-06-03T19:21:22.9362172Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:21:22.9362621Z   TIC_DEPLOY_KEY: 
2021-06-03T19:21:22.9363376Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:21:22.9364888Z   GITHUB_PAT: ***
2021-06-03T19:21:22.9366018Z   COVERALLS_TOKEN: ***
2021-06-03T19:21:22.9366478Z   continue-on-error: true
2021-06-03T19:21:22.9366927Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:21:22.9367373Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:21:22.9367798Z   TZ: UTC
2021-06-03T19:21:22.9368164Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:21:22.9368588Z   NOT_CRAN: true
2021-06-03T19:21:22.9368939Z ##[endgroup]
2021-06-03T19:21:23.3767207Z ─ Session info ───────────────────────────────────────────────────────────────────────────────────
2021-06-03T19:21:23.3768224Z  setting  value                                             
2021-06-03T19:21:23.3769383Z  version  R Under development (unstable) (2021-06-02 r80448)
2021-06-03T19:21:23.3770214Z  os       Ubuntu 20.04.2 LTS                                
2021-06-03T19:21:23.3771149Z  system   x86_64, linux-gnu                                 
2021-06-03T19:21:23.3772125Z  ui       X11                                               
2021-06-03T19:21:23.3772802Z  language (EN)                                              
2021-06-03T19:21:23.3773722Z  collate  C.UTF-8                                           
2021-06-03T19:21:23.3774628Z  ctype    C.UTF-8                                           
2021-06-03T19:21:23.3775313Z  tz       UTC                                               
2021-06-03T19:21:23.3776166Z  date     2021-06-03                                        
2021-06-03T19:21:23.3776630Z 
2021-06-03T19:21:23.3777640Z ─ Packages ───────────────────────────────────────────────────────────────────────────────────────
2021-06-03T19:21:23.3778520Z  package              * version    date       lib source                               
2021-06-03T19:21:23.3779654Z  aghast                 0.2.1      2021-06-03 [1] Github (muschellij2/aghast@0c3b853)  
2021-06-03T19:21:23.3780742Z  askpass                1.1        2019-01-13 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3781763Z  base                 * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3782763Z  base64enc              0.1-3      2015-07-28 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3783816Z  Biobase                2.53.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3784942Z  BiocGenerics           0.39.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3786027Z  BiocManager            1.30.15    2021-05-11 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3787099Z  BiocStyle              2.21.1     2021-06-01 [1] Bioconductor                         
2021-06-03T19:21:23.3788151Z  bitops                 1.0-7      2021-04-24 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3789139Z  bookdown               0.22       2021-04-22 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3791242Z  boot                   1.3-28     2021-05-03 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3794951Z  brew                   1.0-6      2011-04-13 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3795750Z  brio                   1.1.2      2021-04-23 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3796545Z  cachem                 1.0.5      2021-05-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3797490Z  callr                  3.7.0      2021-04-20 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3798295Z  class                  7.3-19     2021-05-03 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3799075Z  cli                    2.5.0      2021-04-26 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3799837Z  clipr                  0.7.1      2020-10-08 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3800627Z  cluster                2.1.2      2021-04-17 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3801439Z  codetools              0.2-18     2020-11-04 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3802262Z  commonmark             1.7        2018-12-01 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3803078Z  compiler               4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3803854Z  covr                   3.5.1      2020-09-16 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3804642Z  cpp11                  0.2.7      2021-03-29 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3805425Z  crayon                 1.4.1      2021-02-08 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3806444Z  credentials            1.3.0      2020-07-21 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3807258Z  curl                   4.3.1      2021-04-30 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3808045Z  datasets             * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3808953Z  debugme                1.1.0      2017-10-22 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3809831Z  DelayedArray           0.19.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3810770Z  desc                   1.2.0.9000 2021-06-03 [1] Github (muschellij2/desc@7be86f2)    
2021-06-03T19:21:23.3811628Z  devtools               2.4.1      2021-05-05 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3812439Z  diffobj                0.3.4      2021-03-22 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3813230Z  digest                 0.6.27     2020-10-24 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3813999Z  dplyr                  1.0.6      2021-05-05 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3814803Z  ellipsis               0.3.2      2021-04-29 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3815617Z  evaluate               0.14       2019-05-28 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3816405Z  fansi                  0.5.0      2021-05-25 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3817190Z  fastmap                1.1.0      2021-01-25 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3817990Z  foreign                0.8-81     2020-12-22 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3818755Z  fs                     1.5.0      2020-07-31 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3819539Z  generics               0.1.0      2020-10-31 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3820417Z  GenomeInfoDb           1.29.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3821400Z  GenomeInfoDbData       1.2.6      2021-06-03 [1] Bioconductor                         
2021-06-03T19:21:23.3822375Z  GenomicRanges          1.45.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3823240Z  gert                   1.3.0      2021-03-29 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3824001Z  gh                     1.3.0      2021-04-30 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3824873Z  ghtravis               0.15.1     2021-06-03 [1] Github (muschellij2/ghtravis@0b26809)
2021-06-03T19:21:23.3825741Z  git2r                  0.28.0     2021-01-10 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3826612Z  gitcreds               0.1.1      2020-12-04 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3827422Z  glue                   1.4.2      2020-08-27 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3828201Z  graphics             * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3829019Z  grDevices            * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3829810Z  grid                   4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3830571Z  highr                  0.9        2021-04-16 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3831377Z  htmltools              0.5.1.1    2021-01-22 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3832166Z  httr                   1.4.2      2020-07-20 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3832918Z  ini                    0.3.1      2018-05-20 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3833738Z  IRanges                2.27.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3834579Z  jsonlite               1.7.2      2020-12-09 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3835386Z  KernSmooth             2.23-20    2021-05-03 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3836195Z  knitr                  1.33       2021-04-24 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3836987Z  lattice                0.20-44    2021-05-02 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3837861Z  lazyeval               0.2.2      2019-03-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3838679Z  lifecycle              1.0.0      2021-02-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3839493Z  magrittr               2.0.1      2020-11-17 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3840280Z  markdown               1.1        2019-08-07 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3841071Z  MASS                   7.3-54     2021-05-03 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3841855Z  Matrix                 1.3-3      2021-05-04 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3842716Z  MatrixGenerics         1.5.0      2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3843615Z  matrixStats            0.59.0     2021-06-01 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3844422Z  memoise                2.0.0      2021-01-26 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3845222Z  methods              * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3846125Z  mgcv                   1.8-35     2021-04-18 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3846889Z  mime                   0.10       2021-02-13 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3847672Z  nlme                   3.1-152    2021-02-04 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3848448Z  nnet                   7.3-16     2021-05-03 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3849220Z  openssl                1.4.4      2021-04-30 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3850027Z  parallel               4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3850824Z  pillar                 1.6.1      2021-05-16 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3851610Z  pkgbuild               1.2.0      2020-12-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3852434Z  pkgconfig              2.0.3      2019-09-22 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3853240Z  pkgload                1.2.1      2021-04-06 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3854022Z  praise                 1.0.0      2015-08-11 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3854925Z  prettyunits            1.1.1      2020-01-24 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3855764Z  processx               3.5.2      2021-04-30 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3856541Z  ps                     1.6.0      2021-02-28 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3857315Z  purrr                  0.3.4      2020-04-17 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3858077Z  R6                     2.5.0      2020-10-28 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3858847Z  rappdirs               0.3.3      2021-01-31 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3859668Z  rcmdcheck              1.3.3      2019-05-07 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3860471Z  Rcpp                   1.0.6      2021-01-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3861241Z  RCurl                  1.98-1.3   2021-03-16 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3862045Z  rematch2               2.1.2      2020-05-01 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3862841Z  remotes                2.4.0      2021-06-02 [1] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3863623Z  rex                    1.2.0      2020-04-21 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3864390Z  rlang                  0.4.11     2021-04-30 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3865171Z  rmarkdown              2.8        2021-05-07 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3866063Z  roxygen2               7.1.1      2020-06-27 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3866857Z  rpart                  4.1-15     2019-04-12 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3867644Z  rprojroot              2.0.2      2020-11-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3868468Z  rstudioapi             0.13       2020-11-12 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3869294Z  rversions              2.1.1      2021-05-31 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3870126Z  S4Vectors              0.31.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3870989Z  sessioninfo            1.1.1      2018-11-05 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3871808Z  spatial                7.3-14     2021-05-03 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3872591Z  splines                4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3873376Z  stats                * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3874149Z  stats4                 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3874922Z  stringi                1.6.2      2021-05-17 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3875720Z  stringr                1.4.0      2019-02-10 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3876653Z  SummarizedExperiment   1.23.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3877581Z  survival               3.2-11     2021-04-26 [2] CRAN (R 4.2.0)                       
2021-06-03T19:21:23.3878359Z  sys                    3.4        2020-07-23 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3879196Z  sysreqs                1.0.0.9000 2021-06-03 [1] Github (r-hub/sysreqs@f068afa)       
2021-06-03T19:21:23.3880156Z  tcltk                  4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3880941Z  testthat               3.0.2      2021-02-14 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3881742Z  tibble                 3.1.2      2021-05-16 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3882570Z  tic                    0.10.0     2021-06-03 [1] Github (ropensci/tic@3b4dfb8)        
2021-06-03T19:21:23.3883447Z  tidyr                  1.1.3      2021-03-03 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3884275Z  tidyselect             1.1.1      2021-04-30 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3885091Z  tinytex                0.32       2021-05-29 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3913265Z  tools                  4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3947629Z  usethis                2.0.1      2021-02-10 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3948737Z  utf8                   1.2.1      2021-03-12 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3949524Z  utils                * 4.2.0      2021-06-03 [2] local                                
2021-06-03T19:21:23.3950312Z  vctrs                  0.3.8      2021-04-29 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3951101Z  waldo                  0.2.5      2021-03-08 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3951895Z  whisker                0.4        2019-08-28 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3952691Z  withr                  2.4.2      2021-04-18 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3953452Z  xfun                   0.23       2021-05-15 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3954236Z  xml2                   1.3.2      2020-04-23 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3955021Z  xopen                  1.0.0      2018-09-17 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3955981Z  XVector                0.33.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3956808Z  yaml                   2.2.1      2020-02-01 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3957579Z  zip                    2.2.0      2021-05-31 [1] RSPM (R 4.2.0)                       
2021-06-03T19:21:23.3958385Z  zlibbioc               1.39.0     2021-05-19 [1] Bioconductor                         
2021-06-03T19:21:23.3958744Z 
2021-06-03T19:21:23.3959188Z [1] /home/runner/work/_temp/Library
2021-06-03T19:21:23.3959704Z [2] /opt/R/devel/lib/R/library
2021-06-03T19:21:23.3989638Z ##[group]Run Rscript -e 'tic::script()'
2021-06-03T19:21:23.3990204Z Rscript -e 'tic::script()'
2021-06-03T19:21:23.3990599Z ls -l check
2021-06-03T19:21:23.4031660Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
2021-06-03T19:21:23.4032134Z env:
2021-06-03T19:21:23.4032553Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:21:23.4032985Z   TIC_DEPLOY_KEY: 
2021-06-03T19:21:23.4033766Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:21:23.4035595Z   GITHUB_PAT: ***
2021-06-03T19:21:23.4036349Z   COVERALLS_TOKEN: ***
2021-06-03T19:21:23.4036817Z   continue-on-error: true
2021-06-03T19:21:23.4037269Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:21:23.4037721Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:21:23.4038149Z   TZ: UTC
2021-06-03T19:21:23.4038502Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:21:23.4038895Z   NOT_CRAN: true
2021-06-03T19:21:23.4039253Z ##[endgroup]
2021-06-03T19:21:23.6519380Z ✔ Loading tic stage configuration from tic.R
2021-06-03T19:21:23.7687221Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 
2021-06-03T19:21:23.7688316Z     args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 
2021-06-03T19:21:23.7689071Z     timeout = Inf, check_dir = "check")
2021-06-03T19:21:23.8237280Z ── R CMD build ─────────────────────────────────────────────────────────────────
2021-06-03T19:21:24.0217110Z * checking for file ‘.../DESCRIPTION’ ... OK
2021-06-03T19:21:24.0324966Z * preparing ‘neuroCombatData’:
2021-06-03T19:21:24.0420175Z * checking DESCRIPTION meta-information ... OK
2021-06-03T19:21:24.0815316Z * checking for LF line-endings in source and make files and shell scripts
2021-06-03T19:21:24.0816583Z * checking for empty or unneeded directories
2021-06-03T19:21:24.0839360Z * building ‘neuroCombatData_0.99.0.tar.gz’
2021-06-03T19:21:24.1347457Z 
2021-06-03T19:21:24.2556314Z ── R CMD check ─────────────────────────────────────────────────────────────────
2021-06-03T19:21:24.4548408Z * using log directory ‘/home/runner/work/neuroCombatData/neuroCombatData/check/neuroCombatData.Rcheck’
2021-06-03T19:21:24.4551283Z * using R Under development (unstable) (2021-06-02 r80448)
2021-06-03T19:21:24.4552588Z * using platform: x86_64-pc-linux-gnu (64-bit)
2021-06-03T19:21:24.4553648Z * using session charset: UTF-8
2021-06-03T19:21:24.4943418Z * using option ‘--as-cran’
2021-06-03T19:21:24.4963878Z * checking for file ‘neuroCombatData/DESCRIPTION’ ... OK
2021-06-03T19:21:24.4965383Z * this is package ‘neuroCombatData’ version ‘0.99.0’
2021-06-03T19:21:24.4967778Z * package encoding: UTF-8
2021-06-03T19:21:24.4997395Z * checking package namespace information ... OK
2021-06-03T19:21:38.3077183Z * checking package dependencies ... OK
2021-06-03T19:21:38.3087363Z * checking if this is a source package ... OK
2021-06-03T19:21:38.3088611Z * checking if there is a namespace ... OK
2021-06-03T19:21:38.3626812Z * checking for executable files ... OK
2021-06-03T19:21:38.3627626Z * checking for hidden files and directories ... NOTE
2021-06-03T19:21:38.3628341Z Found the following hidden files and directories:
2021-06-03T19:21:38.3628877Z   .travis.yml
2021-06-03T19:21:38.3630072Z These were most likely included in error. See section ‘Package
2021-06-03T19:21:38.3630956Z structure’ in the ‘Writing R Extensions’ manual.
2021-06-03T19:21:38.3631607Z * checking for portable file names ... OK
2021-06-03T19:21:38.3632533Z * checking for sufficient/correct file permissions ... OK
2021-06-03T19:21:51.6829766Z * checking whether package ‘neuroCombatData’ can be installed ... OK
2021-06-03T19:21:51.6879923Z * checking installed package size ... OK
2021-06-03T19:21:51.7607646Z * checking package directory ... OK
2021-06-03T19:21:51.7608715Z * checking for future file timestamps ... OK
2021-06-03T19:21:51.9164466Z * checking DESCRIPTION meta-information ... OK
2021-06-03T19:21:51.9181869Z * checking top-level files ... OK
2021-06-03T19:21:51.9183183Z * checking for left-over files ... OK
2021-06-03T19:21:51.9183807Z * checking index information ... OK
2021-06-03T19:21:51.9628973Z * checking package subdirectories ... OK
2021-06-03T19:21:52.0058682Z * checking R files for non-ASCII characters ... OK
2021-06-03T19:21:52.0499180Z * checking R files for syntax errors ... OK
2021-06-03T19:21:56.2361762Z * checking whether the package can be loaded ... OK
2021-06-03T19:22:00.5961498Z * checking whether the package can be loaded with stated dependencies ... OK
2021-06-03T19:22:04.9525858Z * checking whether the package can be unloaded cleanly ... OK
2021-06-03T19:22:08.8367309Z * checking whether the namespace can be loaded with stated dependencies ... OK
2021-06-03T19:22:12.7527185Z * checking whether the namespace can be unloaded cleanly ... OK
2021-06-03T19:22:16.9665432Z * checking loading without being on the library search path ... OK
2021-06-03T19:22:21.3287150Z * checking dependencies in R code ... OK
2021-06-03T19:22:26.1311130Z * checking S3 generic/method consistency ... OK
2021-06-03T19:22:30.5626426Z * checking replacement functions ... OK
2021-06-03T19:22:34.9404544Z * checking foreign function calls ... OK
2021-06-03T19:22:52.5167131Z * checking R code for possible problems ... OK
2021-06-03T19:22:52.6849479Z * checking Rd files ... OK
2021-06-03T19:22:52.7296646Z * checking Rd metadata ... OK
2021-06-03T19:22:52.7795564Z * checking Rd line widths ... OK
2021-06-03T19:22:52.8514837Z * checking Rd cross-references ... OK
2021-06-03T19:22:57.2305880Z * checking for missing documentation entries ... OK
2021-06-03T19:23:10.3878219Z * checking for code/documentation mismatches ... OK
2021-06-03T19:23:15.2883397Z * checking Rd \usage sections ... OK
2021-06-03T19:23:15.3485351Z * checking Rd contents ... OK
2021-06-03T19:23:15.3973169Z * checking for unstated dependencies in examples ... OK
2021-06-03T19:23:15.3983559Z * checking contents of ‘data’ directory ... OK
2021-06-03T19:23:19.6407566Z * checking data for non-ASCII characters ... OK
2021-06-03T19:23:19.6419837Z * checking LazyData ... OK
2021-06-03T19:23:20.1572717Z * checking data for ASCII and uncompressed saves ... OK
2021-06-03T19:23:20.3167913Z * checking examples ... NONE
2021-06-03T19:23:21.8007410Z * checking PDF version of manual ... OK
2021-06-03T19:23:21.8009146Z * checking for non-standard things in the check directory ... OK
2021-06-03T19:23:21.8010128Z * checking for detritus in the temp directory ... OK
2021-06-03T19:23:21.8010826Z * DONE
2021-06-03T19:23:21.8021125Z 
2021-06-03T19:23:21.8021866Z Status: 1 NOTE
2021-06-03T19:23:21.8022401Z See
2021-06-03T19:23:21.8023900Z   ‘/home/runner/work/neuroCombatData/neuroCombatData/check/neuroCombatData.Rcheck/00check.log’
2021-06-03T19:23:21.8024910Z for details.
2021-06-03T19:23:21.8025332Z 
2021-06-03T19:23:21.8025690Z 
2021-06-03T19:23:21.8787984Z ── R CMD check results ───────────────────────────── neuroCombatData 0.99.0 ────
2021-06-03T19:23:21.8801654Z Duration: 1m 57.7s
2021-06-03T19:23:21.8802134Z 
2021-06-03T19:23:21.8822180Z ❯ checking for hidden files and directories ... NOTE
2021-06-03T19:23:21.8823147Z   Found the following hidden files and directories:
2021-06-03T19:23:21.8823862Z     .travis.yml
2021-06-03T19:23:21.8824871Z   These were most likely included in error. See section ‘Package
2021-06-03T19:23:21.8825974Z   structure’ in the ‘Writing R Extensions’ manual.
2021-06-03T19:23:21.8826546Z 
2021-06-03T19:23:21.8831029Z 0 errors ✔ | 0 warnings ✔ | 1 note ✖
2021-06-03T19:23:21.8913560Z total 1380
2021-06-03T19:23:21.8915069Z drwxr-xr-x 5 runner docker   4096 Jun  3 19:23 neuroCombatData.Rcheck
2021-06-03T19:23:21.8928652Z -rw-r--r-- 1 runner docker 700188 Jun  3 19:21 neuroCombatData_0.99.0.tar.gz
2021-06-03T19:23:21.8930238Z -rw-r--r-- 1 runner docker 708148 Jun  3 19:21 neuroCombatData_0.99.0_R_x86_64-pc-linux-gnu.tar.gz
2021-06-03T19:23:21.8960710Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true
2021-06-03T19:23:21.8961488Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true
2021-06-03T19:23:21.9002235Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0}
2021-06-03T19:23:21.9002732Z env:
2021-06-03T19:23:21.9003139Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:23:21.9003588Z   TIC_DEPLOY_KEY: 
2021-06-03T19:23:21.9004347Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:23:21.9006059Z   GITHUB_PAT: ***
2021-06-03T19:23:21.9006820Z   COVERALLS_TOKEN: ***
2021-06-03T19:23:21.9007300Z   continue-on-error: true
2021-06-03T19:23:21.9007743Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:23:21.9008209Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:23:21.9008618Z   TZ: UTC
2021-06-03T19:23:21.9008984Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:23:21.9009376Z   NOT_CRAN: true
2021-06-03T19:23:21.9009721Z ##[endgroup]
2021-06-03T19:23:21.9123064Z ##[group]Run Rscript -e "tic::before_deploy()"
2021-06-03T19:23:21.9123606Z Rscript -e "tic::before_deploy()"
2021-06-03T19:23:21.9160257Z shell: /usr/bin/bash -e {0}
2021-06-03T19:23:21.9160621Z env:
2021-06-03T19:23:21.9161043Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:23:21.9161529Z   TIC_DEPLOY_KEY: 
2021-06-03T19:23:21.9162307Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:23:21.9163569Z   GITHUB_PAT: ***
2021-06-03T19:23:21.9164318Z   COVERALLS_TOKEN: ***
2021-06-03T19:23:21.9164782Z   continue-on-error: true
2021-06-03T19:23:21.9165232Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:23:21.9165798Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:23:21.9166227Z   TZ: UTC
2021-06-03T19:23:21.9166587Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:23:21.9166986Z   NOT_CRAN: true
2021-06-03T19:23:21.9167349Z ##[endgroup]
2021-06-03T19:23:22.1623315Z ✔ Loading tic stage configuration from tic.R
2021-06-03T19:23:22.2792995Z ##[group]Run actions/upload-release-asset@v1.0.1
2021-06-03T19:23:22.2793518Z with:
2021-06-03T19:23:22.2794385Z   upload_url: https://uploads.github.com/repos/neuroconductor/neuroCombatData/releases/44065807/assets{?name,label}
2021-06-03T19:23:22.2795483Z   asset_path: check/neuroCombatData_0.99.0_R_x86_64-pc-linux-gnu.tar.gz
2021-06-03T19:23:22.2796261Z   asset_name: neuroCombatData_0.99.0_R_x86_64-pc-linux-gnu_R4.1.tar.gz
2021-06-03T19:23:22.2796955Z   asset_content_type: application/octet-stream
2021-06-03T19:23:22.2797431Z env:
2021-06-03T19:23:22.2797827Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:23:22.2798271Z   TIC_DEPLOY_KEY: 
2021-06-03T19:23:22.2799027Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:23:22.2800482Z   GITHUB_PAT: ***
2021-06-03T19:23:22.2801436Z   COVERALLS_TOKEN: ***
2021-06-03T19:23:22.2801892Z   continue-on-error: true
2021-06-03T19:23:22.2802346Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:23:22.2802878Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:23:22.2803309Z   TZ: UTC
2021-06-03T19:23:22.2803666Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:23:22.2804061Z   NOT_CRAN: true
2021-06-03T19:23:22.2804949Z   GITHUB_TOKEN: ***
2021-06-03T19:23:22.2805308Z ##[endgroup]
2021-06-03T19:23:22.8678136Z ##[group]Run Rscript -e "tic::deploy()"
2021-06-03T19:23:22.8678667Z Rscript -e "tic::deploy()"
2021-06-03T19:23:22.8719421Z shell: /usr/bin/bash -e {0}
2021-06-03T19:23:22.8719805Z env:
2021-06-03T19:23:22.8720233Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:23:22.8720665Z   TIC_DEPLOY_KEY: 
2021-06-03T19:23:22.8721438Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:23:22.8723219Z   GITHUB_PAT: ***
2021-06-03T19:23:22.8724046Z   COVERALLS_TOKEN: ***
2021-06-03T19:23:22.8724515Z   continue-on-error: true
2021-06-03T19:23:22.8724951Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:23:22.8725410Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:23:22.8725994Z   TZ: UTC
2021-06-03T19:23:22.8726348Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:23:22.8726740Z   NOT_CRAN: true
2021-06-03T19:23:22.8727087Z ##[endgroup]
2021-06-03T19:23:23.1237744Z ✔ Loading tic stage configuration from tic.R
2021-06-03T19:23:23.2354466Z ##[group]Run Rscript -e "tic::after_deploy()"
2021-06-03T19:23:23.2355080Z Rscript -e "tic::after_deploy()"
2021-06-03T19:23:23.2398326Z shell: /usr/bin/bash -e {0}
2021-06-03T19:23:23.2398692Z env:
2021-06-03T19:23:23.2399114Z   R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
2021-06-03T19:23:23.2399561Z   TIC_DEPLOY_KEY: 
2021-06-03T19:23:23.2400320Z   RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest
2021-06-03T19:23:23.2401950Z   GITHUB_PAT: ***
2021-06-03T19:23:23.2402771Z   COVERALLS_TOKEN: ***
2021-06-03T19:23:23.2403223Z   continue-on-error: true
2021-06-03T19:23:23.2403672Z   VDIFFR_RUN_TESTS: 
2021-06-03T19:23:23.2404117Z   R_LIBS_USER: /home/runner/work/_temp/Library
2021-06-03T19:23:23.2404543Z   TZ: UTC
2021-06-03T19:23:23.2404908Z   _R_CHECK_SYSTEM_CLOCK_: FALSE
2021-06-03T19:23:23.2405287Z   NOT_CRAN: true
2021-06-03T19:23:23.2405831Z ##[endgroup]
2021-06-03T19:23:23.4840738Z ✔ Loading tic stage configuration from tic.R
2021-06-03T19:23:23.7469628Z Post job cleanup.
2021-06-03T19:23:23.7875766Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time.
2021-06-03T19:23:23.7993458Z Post job cleanup.
2021-06-03T19:23:23.8851948Z [command]/usr/bin/git version
2021-06-03T19:23:23.8906962Z git version 2.31.1
2021-06-03T19:23:23.8937783Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand
2021-06-03T19:23:23.8976279Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || :
2021-06-03T19:23:23.9204298Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader
2021-06-03T19:23:23.9238322Z http.https://github.com/.extraheader
2021-06-03T19:23:23.9247809Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader
2021-06-03T19:23:23.9283807Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || :
2021-06-03T19:23:23.9556040Z Cleaning up orphan processes