2021-05-17T17:02:22.0229834Z ##[section]Starting: Request a runner to run this job 2021-05-17T17:02:22.5783542Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-17T17:02:22.6505735Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T17:02:22.7348295Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T17:02:22.8737636Z ##[section]Finishing: Request a runner to run this job 2021-05-17T17:02:32.1229551Z Current runner version: '2.278.0' 2021-05-17T17:02:32.1257977Z ##[group]Operating System 2021-05-17T17:02:32.1259036Z Ubuntu 2021-05-17T17:02:32.1259605Z 20.04.2 2021-05-17T17:02:32.1260087Z LTS 2021-05-17T17:02:32.1260707Z ##[endgroup] 2021-05-17T17:02:32.1261333Z ##[group]Virtual Environment 2021-05-17T17:02:32.1262096Z Environment: ubuntu-20.04 2021-05-17T17:02:32.1262770Z Version: 20210510.0 2021-05-17T17:02:32.1263908Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-17T17:02:32.1265541Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-17T17:02:32.1266582Z ##[endgroup] 2021-05-17T17:02:32.1268714Z ##[group]GITHUB_TOKEN Permissions 2021-05-17T17:02:32.1270043Z Actions: write 2021-05-17T17:02:32.1270710Z Checks: write 2021-05-17T17:02:32.1271294Z Contents: write 2021-05-17T17:02:32.1271944Z Deployments: write 2021-05-17T17:02:32.1272668Z Issues: write 2021-05-17T17:02:32.1273322Z Metadata: read 2021-05-17T17:02:32.1273961Z Packages: write 2021-05-17T17:02:32.1274575Z PullRequests: write 2021-05-17T17:02:32.1275333Z RepositoryProjects: write 2021-05-17T17:02:32.1276053Z SecurityEvents: write 2021-05-17T17:02:32.1276760Z Statuses: write 2021-05-17T17:02:32.1277478Z ##[endgroup] 2021-05-17T17:02:32.1280857Z Prepare workflow directory 2021-05-17T17:02:32.2420559Z Prepare all required actions 2021-05-17T17:02:32.2432948Z Getting action download info 2021-05-17T17:02:32.6384369Z Download action repository 'actions/checkout@v2' 2021-05-17T17:02:34.7577228Z Download action repository 'r-lib/actions@master' 2021-05-17T17:02:36.4173420Z Download action repository 'adigherman/actions@master' 2021-05-17T17:02:39.5576999Z Download action repository 'msys2/setup-msys2@v2' 2021-05-17T17:02:41.6118148Z Download action repository 'actions/cache@v1' 2021-05-17T17:02:42.6976395Z Download action repository 'actions/upload-artifact@master' 2021-05-17T17:02:43.7822125Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-17T17:02:45.0336952Z ##[group]Run actions/checkout@v2 2021-05-17T17:02:45.0337635Z with: 2021-05-17T17:02:45.0338133Z repository: neuroconductor/alvin 2021-05-17T17:02:45.0339233Z token: *** 2021-05-17T17:02:45.0339658Z ssh-strict: true 2021-05-17T17:02:45.0340200Z persist-credentials: true 2021-05-17T17:02:45.0340724Z clean: true 2021-05-17T17:02:45.0341137Z fetch-depth: 1 2021-05-17T17:02:45.0341559Z lfs: false 2021-05-17T17:02:45.0341981Z submodules: false 2021-05-17T17:02:45.0342384Z env: 2021-05-17T17:02:45.0342861Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:02:45.0343368Z TIC_DEPLOY_KEY: 2021-05-17T17:02:45.0344245Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:02:45.0345571Z GITHUB_PAT: *** 2021-05-17T17:02:45.0346447Z COVERALLS_TOKEN: *** 2021-05-17T17:02:45.0346985Z continue-on-error: true 2021-05-17T17:02:45.0347512Z VDIFFR_RUN_TESTS: 2021-05-17T17:02:45.0347933Z ##[endgroup] 2021-05-17T17:02:45.6314833Z Syncing repository: neuroconductor/alvin 2021-05-17T17:02:45.6315780Z ##[group]Getting Git version info 2021-05-17T17:02:45.6317443Z Working directory is '/home/runner/work/alvin/alvin' 2021-05-17T17:02:45.6321806Z [command]/usr/bin/git version 2021-05-17T17:02:45.6336343Z git version 2.31.1 2021-05-17T17:02:45.6338051Z ##[endgroup] 2021-05-17T17:02:45.6338989Z Deleting the contents of '/home/runner/work/alvin/alvin' 2021-05-17T17:02:45.6340713Z ##[group]Initializing the repository 2021-05-17T17:02:45.6342224Z [command]/usr/bin/git init /home/runner/work/alvin/alvin 2021-05-17T17:02:45.6343418Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-17T17:02:45.6344422Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-17T17:02:45.6345397Z hint: of your new repositories, which will suppress this warning, call: 2021-05-17T17:02:45.6346105Z hint: 2021-05-17T17:02:45.6346991Z hint: git config --global init.defaultBranch 2021-05-17T17:02:45.6347953Z hint: 2021-05-17T17:02:45.6348843Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-17T17:02:45.6350045Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-17T17:02:45.6350813Z hint: 2021-05-17T17:02:45.6351546Z hint: git branch -m 2021-05-17T17:02:45.6354810Z Initialized empty Git repository in /home/runner/work/alvin/alvin/.git/ 2021-05-17T17:02:45.6355823Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/alvin 2021-05-17T17:02:45.6356632Z ##[endgroup] 2021-05-17T17:02:45.6357211Z ##[group]Disabling automatic garbage collection 2021-05-17T17:02:45.6358192Z [command]/usr/bin/git config --local gc.auto 0 2021-05-17T17:02:45.6358729Z ##[endgroup] 2021-05-17T17:02:45.6360238Z ##[group]Setting up auth 2021-05-17T17:02:45.6361187Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T17:02:45.6362787Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T17:02:45.6364426Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T17:02:45.6366434Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T17:02:45.6370344Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-17T17:02:45.6371317Z ##[endgroup] 2021-05-17T17:02:45.6371915Z ##[group]Fetching the repository 2021-05-17T17:02:45.6374231Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +8403e352861b3a59b2ee405c000b3fdd2257fade:refs/tags/0.3.0.s 2021-05-17T17:02:45.6375557Z remote: Enumerating objects: 61, done. 2021-05-17T17:02:45.6376363Z remote: Counting objects: 1% (1/61) 2021-05-17T17:02:45.6376949Z remote: Counting objects: 3% (2/61) 2021-05-17T17:02:45.6377506Z remote: Counting objects: 4% (3/61) 2021-05-17T17:02:45.6378074Z remote: Counting objects: 6% (4/61) 2021-05-17T17:02:45.6378648Z remote: Counting objects: 8% (5/61) 2021-05-17T17:02:45.6379200Z remote: Counting objects: 9% (6/61) 2021-05-17T17:02:45.6379766Z remote: Counting objects: 11% (7/61) 2021-05-17T17:02:45.6380332Z remote: Counting objects: 13% (8/61) 2021-05-17T17:02:45.6380877Z remote: Counting objects: 14% (9/61) 2021-05-17T17:02:45.6381451Z remote: Counting objects: 16% (10/61) 2021-05-17T17:02:45.6382009Z remote: Counting objects: 18% (11/61) 2021-05-17T17:02:45.6382578Z remote: Counting objects: 19% (12/61) 2021-05-17T17:02:45.6383146Z remote: Counting objects: 21% (13/61) 2021-05-17T17:02:45.6383709Z remote: Counting objects: 22% (14/61) 2021-05-17T17:02:45.6384276Z remote: Counting objects: 24% (15/61) 2021-05-17T17:02:45.6384828Z remote: Counting objects: 26% (16/61) 2021-05-17T17:02:45.6385397Z remote: Counting objects: 27% (17/61) 2021-05-17T17:02:45.6385961Z remote: Counting objects: 29% (18/61) 2021-05-17T17:02:45.6386515Z remote: Counting objects: 31% (19/61) 2021-05-17T17:02:45.6387083Z remote: Counting objects: 32% (20/61) 2021-05-17T17:02:45.6387649Z remote: Counting objects: 34% (21/61) 2021-05-17T17:02:45.6388200Z remote: Counting objects: 36% (22/61) 2021-05-17T17:02:45.6388759Z remote: Counting objects: 37% (23/61) 2021-05-17T17:02:45.6389313Z remote: Counting objects: 39% (24/61) 2021-05-17T17:02:45.6389948Z remote: Counting objects: 40% (25/61) 2021-05-17T17:02:45.6390516Z remote: Counting objects: 42% (26/61) 2021-05-17T17:02:45.6391072Z remote: Counting objects: 44% (27/61) 2021-05-17T17:02:45.6391748Z remote: Counting objects: 45% (28/61) 2021-05-17T17:02:45.6392332Z remote: Counting objects: 47% (29/61) 2021-05-17T17:02:45.6392900Z remote: Counting objects: 49% (30/61) 2021-05-17T17:02:45.6393464Z remote: Counting objects: 50% (31/61) 2021-05-17T17:02:45.6394014Z remote: Counting objects: 52% (32/61) 2021-05-17T17:02:45.6394579Z remote: Counting objects: 54% (33/61) 2021-05-17T17:02:45.6395144Z remote: Counting objects: 55% (34/61) 2021-05-17T17:02:45.6395698Z remote: Counting objects: 57% (35/61) 2021-05-17T17:02:45.6396258Z remote: Counting objects: 59% (36/61) 2021-05-17T17:02:45.6396811Z remote: Counting objects: 60% (37/61) 2021-05-17T17:02:45.6397369Z remote: Counting objects: 62% (38/61) 2021-05-17T17:02:45.6397928Z remote: Counting objects: 63% (39/61) 2021-05-17T17:02:45.6398482Z remote: Counting objects: 65% (40/61) 2021-05-17T17:02:45.6399053Z remote: Counting objects: 67% (41/61) 2021-05-17T17:02:45.6399601Z remote: Counting objects: 68% (42/61) 2021-05-17T17:02:45.6401050Z remote: Counting objects: 70% (43/61) 2021-05-17T17:02:45.6401624Z remote: Counting objects: 72% (44/61) 2021-05-17T17:02:45.6402179Z remote: Counting objects: 73% (45/61) 2021-05-17T17:02:45.6402740Z remote: Counting objects: 75% (46/61) 2021-05-17T17:02:45.6403308Z remote: Counting objects: 77% (47/61) 2021-05-17T17:02:45.6403855Z remote: Counting objects: 78% (48/61) 2021-05-17T17:02:45.6404415Z remote: Counting objects: 80% (49/61) 2021-05-17T17:02:45.6404968Z remote: Counting objects: 81% (50/61) 2021-05-17T17:02:45.6405932Z remote: Counting objects: 83% (51/61) 2021-05-17T17:02:45.6406507Z remote: Counting objects: 85% (52/61) 2021-05-17T17:02:45.6407059Z remote: Counting objects: 86% (53/61) 2021-05-17T17:02:45.6407622Z remote: Counting objects: 88% (54/61) 2021-05-17T17:02:45.6408336Z remote: Counting objects: 90% (55/61) 2021-05-17T17:02:45.6408909Z remote: Counting objects: 91% (56/61) 2021-05-17T17:02:45.6409476Z remote: Counting objects: 93% (57/61) 2021-05-17T17:02:45.6410188Z remote: Counting objects: 95% (58/61) 2021-05-17T17:02:45.6410754Z remote: Counting objects: 96% (59/61) 2021-05-17T17:02:45.6411326Z remote: Counting objects: 98% (60/61) 2021-05-17T17:02:45.6411874Z remote: Counting objects: 100% (61/61) 2021-05-17T17:02:45.6412464Z remote: Counting objects: 100% (61/61), done. 2021-05-17T17:02:45.6413115Z remote: Compressing objects: 2% (1/47) 2021-05-17T17:02:45.6413728Z remote: Compressing objects: 4% (2/47) 2021-05-17T17:02:45.6414343Z remote: Compressing objects: 6% (3/47) 2021-05-17T17:02:45.6414949Z remote: Compressing objects: 8% (4/47) 2021-05-17T17:02:45.6415571Z remote: Compressing objects: 10% (5/47) 2021-05-17T17:02:45.6416200Z remote: Compressing objects: 12% (6/47) 2021-05-17T17:02:45.6416811Z remote: Compressing objects: 14% (7/47) 2021-05-17T17:02:45.6417425Z remote: Compressing objects: 17% (8/47) 2021-05-17T17:02:45.6418042Z remote: Compressing objects: 19% (9/47) 2021-05-17T17:02:45.6418644Z remote: Compressing objects: 21% (10/47) 2021-05-17T17:02:45.6419259Z remote: Compressing objects: 23% (11/47) 2021-05-17T17:02:45.6419875Z remote: Compressing objects: 25% (12/47) 2021-05-17T17:02:45.6420871Z remote: Compressing objects: 27% (13/47) 2021-05-17T17:02:45.6421803Z remote: Compressing objects: 29% (14/47) 2021-05-17T17:02:45.6422796Z remote: Compressing objects: 31% (15/47) 2021-05-17T17:02:45.6423425Z remote: Compressing objects: 34% (16/47) 2021-05-17T17:02:45.6424044Z remote: Compressing objects: 36% (17/47) 2021-05-17T17:02:45.6424652Z remote: Compressing objects: 38% (18/47) 2021-05-17T17:02:45.6425451Z remote: Compressing objects: 40% (19/47) 2021-05-17T17:02:45.6426049Z remote: Compressing objects: 42% (20/47) 2021-05-17T17:02:45.6426663Z remote: Compressing objects: 44% (21/47) 2021-05-17T17:02:45.6427283Z remote: Compressing objects: 46% (22/47) 2021-05-17T17:02:45.6427885Z remote: Compressing objects: 48% (23/47) 2021-05-17T17:02:45.6428501Z remote: Compressing objects: 51% (24/47) 2021-05-17T17:02:45.6429101Z remote: Compressing objects: 53% (25/47) 2021-05-17T17:02:45.6429717Z remote: Compressing objects: 55% (26/47) 2021-05-17T17:02:45.6431073Z remote: Compressing objects: 57% (27/47) 2021-05-17T17:02:45.6431715Z remote: Compressing objects: 59% (28/47) 2021-05-17T17:02:45.6432334Z remote: Compressing objects: 61% (29/47) 2021-05-17T17:02:45.6433352Z remote: Compressing objects: 63% (30/47) 2021-05-17T17:02:45.6433994Z remote: Compressing objects: 65% (31/47) 2021-05-17T17:02:45.6434627Z remote: Compressing objects: 68% (32/47) 2021-05-17T17:02:45.6435226Z remote: Compressing objects: 70% (33/47) 2021-05-17T17:02:45.6435838Z remote: Compressing objects: 72% (34/47) 2021-05-17T17:02:45.6436455Z remote: Compressing objects: 74% (35/47) 2021-05-17T17:02:45.6437051Z remote: Compressing objects: 76% (36/47) 2021-05-17T17:02:45.6437665Z remote: Compressing objects: 78% (37/47) 2021-05-17T17:02:45.6438263Z remote: Compressing objects: 80% (38/47) 2021-05-17T17:02:45.6438875Z remote: Compressing objects: 82% (39/47) 2021-05-17T17:02:45.6439489Z remote: Compressing objects: 85% (40/47) 2021-05-17T17:02:45.6440089Z remote: Compressing objects: 87% (41/47) 2021-05-17T17:02:45.6440711Z remote: Compressing objects: 89% (42/47) 2021-05-17T17:02:45.6441321Z remote: Compressing objects: 91% (43/47) 2021-05-17T17:02:45.6441922Z remote: Compressing objects: 93% (44/47) 2021-05-17T17:02:45.6442680Z remote: Compressing objects: 95% (45/47) 2021-05-17T17:02:45.6443288Z remote: Compressing objects: 97% (46/47) 2021-05-17T17:02:45.6443903Z remote: Compressing objects: 100% (47/47) 2021-05-17T17:02:45.6444550Z remote: Compressing objects: 100% (47/47), done. 2021-05-17T17:02:45.6536411Z remote: Total 61 (delta 4), reused 56 (delta 4), pack-reused 0 2021-05-17T17:02:45.6686165Z From https://github.com/neuroconductor/alvin 2021-05-17T17:02:45.6687737Z * [new ref] 8403e352861b3a59b2ee405c000b3fdd2257fade -> 0.3.0.s 2021-05-17T17:02:45.6717424Z ##[endgroup] 2021-05-17T17:02:45.6718053Z ##[group]Determining the checkout info 2021-05-17T17:02:45.6720411Z ##[endgroup] 2021-05-17T17:02:45.6720915Z ##[group]Checking out the ref 2021-05-17T17:02:45.6723181Z [command]/usr/bin/git checkout --progress --force refs/tags/0.3.0.s 2021-05-17T17:02:45.6849299Z Note: switching to 'refs/tags/0.3.0.s'. 2021-05-17T17:02:45.6851843Z 2021-05-17T17:02:45.6853419Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-17T17:02:45.6854343Z changes and commit them, and you can discard any commits you make in this 2021-05-17T17:02:45.6855185Z state without impacting any branches by switching back to a branch. 2021-05-17T17:02:45.6855878Z 2021-05-17T17:02:45.6891331Z If you want to create a new branch to retain commits you create, you may 2021-05-17T17:02:45.6892896Z do so (now or later) by using -c with the switch command. Example: 2021-05-17T17:02:45.6893527Z 2021-05-17T17:02:45.6894295Z git switch -c 2021-05-17T17:02:45.6894819Z 2021-05-17T17:02:45.6895382Z Or undo this operation with: 2021-05-17T17:02:45.6895840Z 2021-05-17T17:02:45.6896471Z git switch - 2021-05-17T17:02:45.6896887Z 2021-05-17T17:02:45.6897688Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-17T17:02:45.6898388Z 2021-05-17T17:02:45.6898957Z HEAD is now at 8403e35 Version id 146 stable 2021-05-17T17:02:45.6899960Z ##[endgroup] 2021-05-17T17:02:45.6949650Z [command]/usr/bin/git log -1 --format='%H' 2021-05-17T17:02:45.6988850Z '8403e352861b3a59b2ee405c000b3fdd2257fade' 2021-05-17T17:02:45.7166188Z ##[group]Run r-lib/actions/setup-r@master 2021-05-17T17:02:45.7166741Z with: 2021-05-17T17:02:45.7167158Z r-version: devel 2021-05-17T17:02:45.7167592Z Ncpus: 1 2021-05-17T17:02:45.7168062Z crayon.enabled: NULL 2021-05-17T17:02:45.7168656Z remove-openmp-macos: true 2021-05-17T17:02:45.7169290Z http-user-agent: default 2021-05-17T17:02:45.7169806Z install-r: true 2021-05-17T17:02:45.7170641Z windows-path-include-mingw: true 2021-05-17T17:02:45.7171248Z env: 2021-05-17T17:02:45.7171732Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:02:45.7172268Z TIC_DEPLOY_KEY: 2021-05-17T17:02:45.7173152Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:02:45.7174599Z GITHUB_PAT: *** 2021-05-17T17:02:45.7175505Z COVERALLS_TOKEN: *** 2021-05-17T17:02:45.7176061Z continue-on-error: true 2021-05-17T17:02:45.7176604Z VDIFFR_RUN_TESTS: 2021-05-17T17:02:45.7177058Z ##[endgroup] 2021-05-17T17:02:48.5876543Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-17T17:02:50.2156145Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T17:02:50.2159286Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-17T17:02:50.2247072Z Get:3 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-17T17:02:50.2309919Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-17T17:02:50.2713961Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T17:02:50.3512315Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T17:02:50.4760821Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-17T17:02:50.5021535Z Get:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-17T17:02:50.5175326Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [222 kB] 2021-05-17T17:02:50.5191610Z Get:10 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-17T17:02:50.5220392Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-17T17:02:50.5223607Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-17T17:02:50.5243128Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-17T17:02:50.5256139Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [774 kB] 2021-05-17T17:02:50.5443304Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [166 kB] 2021-05-17T17:02:50.5462759Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.4 kB] 2021-05-17T17:02:50.7355675Z Hit:17 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T17:02:50.9438353Z Get:18 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [655 kB] 2021-05-17T17:02:51.1210370Z Get:19 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [132 kB] 2021-05-17T17:02:51.1240869Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-17T17:02:51.1243125Z Get:21 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-17T17:02:51.1298599Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-17T17:02:51.1302864Z Get:23 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [565 kB] 2021-05-17T17:02:51.1419608Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.0 kB] 2021-05-17T17:02:51.2137862Z Get:25 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.2 kB] 2021-05-17T17:02:58.3819533Z Fetched 4463 kB in 1s (3700 kB/s) 2021-05-17T17:02:59.2762654Z Reading package lists... 2021-05-17T17:02:59.3061677Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-17T17:03:01.5086446Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-17T17:03:01.5857443Z Reading package lists... 2021-05-17T17:03:01.7765815Z Building dependency tree... 2021-05-17T17:03:01.7786830Z Reading state information... 2021-05-17T17:03:01.9556136Z The following additional packages will be installed: 2021-05-17T17:03:01.9557736Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-17T17:03:01.9563083Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-17T17:03:01.9564721Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-17T17:03:01.9566420Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-17T17:03:01.9568059Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-17T17:03:01.9569436Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-17T17:03:01.9571176Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-17T17:03:01.9572809Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-17T17:03:01.9574297Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-17T17:03:01.9575696Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-17T17:03:01.9577148Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-17T17:03:01.9578648Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-17T17:03:01.9580277Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-17T17:03:01.9581860Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-17T17:03:01.9583269Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-17T17:03:01.9584653Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-17T17:03:01.9586798Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T17:03:01.9589403Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T17:03:01.9591698Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T17:03:01.9593626Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T17:03:01.9596003Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T17:03:01.9597804Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T17:03:01.9599838Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T17:03:01.9602015Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T17:03:01.9604015Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T17:03:01.9605936Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T17:03:01.9607993Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T17:03:01.9610217Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T17:03:01.9612302Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T17:03:01.9614370Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T17:03:01.9616414Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T17:03:01.9618602Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T17:03:01.9620804Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T17:03:01.9622789Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T17:03:01.9624720Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T17:03:01.9627079Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T17:03:01.9628949Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T17:03:01.9630864Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-17T17:03:01.9631675Z Suggested packages: 2021-05-17T17:03:01.9632594Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-17T17:03:01.9633831Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-17T17:03:01.9635186Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-17T17:03:01.9636549Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-17T17:03:01.9637884Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-17T17:03:01.9639504Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-17T17:03:01.9640761Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-17T17:03:01.9642214Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-17T17:03:01.9643888Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-17T17:03:01.9645310Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-17T17:03:02.5291076Z The following NEW packages will be installed: 2021-05-17T17:03:02.5294643Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-17T17:03:02.5297567Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-17T17:03:02.5300998Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-17T17:03:02.5303089Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-17T17:03:02.5305594Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-17T17:03:02.5322698Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-17T17:03:02.5325430Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-17T17:03:02.5328125Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-17T17:03:02.5331256Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-17T17:03:02.5333889Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-17T17:03:02.5336281Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-17T17:03:02.5338861Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-17T17:03:02.5401231Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-17T17:03:02.5403350Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-17T17:03:02.5405006Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-17T17:03:02.5406469Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-17T17:03:02.5408095Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T17:03:02.5409906Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T17:03:02.5411988Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T17:03:02.5413596Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T17:03:02.5414981Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T17:03:02.5416424Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T17:03:02.5418063Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T17:03:02.5419749Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T17:03:02.5421360Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T17:03:02.5422824Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T17:03:02.5424504Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T17:03:02.5426122Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T17:03:02.5427948Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T17:03:02.5429737Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T17:03:02.5431398Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T17:03:02.5433103Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T17:03:02.5434842Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T17:03:02.5436378Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T17:03:02.5437952Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T17:03:02.5439579Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T17:03:02.5441024Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T17:03:02.5442268Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-17T17:03:02.5668992Z 0 upgraded, 130 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:02.5669812Z Need to get 8648 kB of archives. 2021-05-17T17:03:02.5670549Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-17T17:03:02.5672390Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-17T17:03:02.5728496Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-17T17:03:02.5738701Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-17T17:03:02.5748702Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-17T17:03:02.5762727Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-17T17:03:02.5788550Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-17T17:03:02.5798301Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-17T17:03:02.5804698Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-17T17:03:02.5809860Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-17T17:03:02.5842922Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-17T17:03:02.5854475Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-17T17:03:02.5856482Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-17T17:03:02.5858245Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-17T17:03:02.5861958Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-17T17:03:02.5863870Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-17T17:03:02.5865578Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-17T17:03:02.5867141Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-17T17:03:02.5878359Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-17T17:03:02.5902274Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-17T17:03:02.6078526Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-17T17:03:02.6085665Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-17T17:03:02.6103026Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-17T17:03:02.6112410Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-17T17:03:02.6128805Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-17T17:03:02.6138624Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-17T17:03:02.6381308Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-17T17:03:02.6391496Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-17T17:03:02.6406349Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-17T17:03:02.6430815Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-17T17:03:02.6436386Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-17T17:03:02.6443134Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-17T17:03:02.6449871Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-17T17:03:02.6455834Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-17T17:03:02.6462420Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-17T17:03:02.6469011Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-17T17:03:02.6475628Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-17T17:03:02.6489307Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-17T17:03:02.6506370Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-17T17:03:02.6517701Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-17T17:03:02.6523875Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-17T17:03:02.6533777Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-17T17:03:02.6544469Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-17T17:03:02.6575012Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-17T17:03:02.6577170Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-17T17:03:02.6579255Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-17T17:03:02.6587750Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-17T17:03:02.6620038Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-17T17:03:02.6628549Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-17T17:03:02.6637909Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-17T17:03:02.6643407Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-17T17:03:02.6651730Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-17T17:03:02.6695675Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-17T17:03:02.6703420Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-17T17:03:02.6712434Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-17T17:03:02.6725056Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-17T17:03:02.6732325Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-17T17:03:02.6738543Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-17T17:03:02.6745377Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-17T17:03:02.6752568Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-17T17:03:02.6759790Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-17T17:03:02.6856823Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-17T17:03:02.6873940Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-17T17:03:02.6883560Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-17T17:03:02.6895046Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-17T17:03:02.6902651Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-17T17:03:02.6910488Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-17T17:03:02.6917062Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-17T17:03:02.6930631Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-17T17:03:02.6969391Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-17T17:03:02.6972023Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-17T17:03:02.6974562Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-17T17:03:02.6977297Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-17T17:03:02.6985350Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-17T17:03:02.6991882Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-17T17:03:02.6998085Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-17T17:03:02.7017365Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-17T17:03:02.7057545Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-17T17:03:02.7092017Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-17T17:03:02.7104163Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-17T17:03:02.7108658Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-17T17:03:02.7140553Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-17T17:03:02.7149255Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-17T17:03:02.7155409Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-17T17:03:02.7162106Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-17T17:03:02.7177704Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-17T17:03:02.7183925Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-17T17:03:02.7198811Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-17T17:03:02.7214663Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-17T17:03:02.7243234Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-17T17:03:02.7245877Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-17T17:03:02.7249829Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-17T17:03:02.7252276Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-17T17:03:02.7254081Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-17T17:03:02.7260395Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-17T17:03:02.7267750Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-17T17:03:02.7273469Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-17T17:03:02.7280116Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-17T17:03:02.7289173Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-17T17:03:02.7298048Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-17T17:03:02.7325068Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-17T17:03:02.7327236Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-17T17:03:02.7418953Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-17T17:03:02.7453933Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-17T17:03:02.7461399Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-17T17:03:02.7467982Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-17T17:03:02.7475568Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-17T17:03:02.7488061Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-17T17:03:02.7495963Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-17T17:03:02.7524717Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-17T17:03:02.7553295Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-17T17:03:02.7561499Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-17T17:03:02.7572058Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-17T17:03:02.7577881Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-17T17:03:02.7586377Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-17T17:03:02.7592861Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-17T17:03:02.7600900Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-17T17:03:02.7607873Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-17T17:03:02.7616228Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-17T17:03:02.7622274Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-17T17:03:02.7630282Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-17T17:03:02.7637942Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-17T17:03:02.7646404Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-17T17:03:02.7654244Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-17T17:03:02.7661630Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-17T17:03:02.7668340Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-17T17:03:02.7677899Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-17T17:03:02.7820215Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-17T17:03:02.7826112Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-17T17:03:02.7834683Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-17T17:03:02.7883822Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-17T17:03:03.5985863Z Fetched 8648 kB in 0s (34.7 MB/s) 2021-05-17T17:03:03.6419506Z Selecting previously unselected package dctrl-tools. 2021-05-17T17:03:03.6621280Z (Reading database ... 2021-05-17T17:03:03.6622539Z (Reading database ... 5% 2021-05-17T17:03:03.6623133Z (Reading database ... 10% 2021-05-17T17:03:03.6623758Z (Reading database ... 15% 2021-05-17T17:03:03.6624324Z (Reading database ... 20% 2021-05-17T17:03:03.6624833Z (Reading database ... 25% 2021-05-17T17:03:03.6625428Z (Reading database ... 30% 2021-05-17T17:03:03.6625937Z (Reading database ... 35% 2021-05-17T17:03:03.6626571Z (Reading database ... 40% 2021-05-17T17:03:03.6627141Z (Reading database ... 45% 2021-05-17T17:03:03.6627646Z (Reading database ... 50% 2021-05-17T17:03:03.6938967Z (Reading database ... 55% 2021-05-17T17:03:03.7482080Z (Reading database ... 60% 2021-05-17T17:03:03.7908864Z (Reading database ... 65% 2021-05-17T17:03:03.8306594Z (Reading database ... 70% 2021-05-17T17:03:03.9163957Z (Reading database ... 75% 2021-05-17T17:03:04.0160183Z (Reading database ... 80% 2021-05-17T17:03:04.1249308Z (Reading database ... 85% 2021-05-17T17:03:04.1931765Z (Reading database ... 90% 2021-05-17T17:03:04.2696098Z (Reading database ... 95% 2021-05-17T17:03:04.2696851Z (Reading database ... 100% 2021-05-17T17:03:04.2697676Z (Reading database ... 254809 files and directories currently installed.) 2021-05-17T17:03:04.2699356Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-17T17:03:04.2915612Z Unpacking dctrl-tools (2.24-3) ... 2021-05-17T17:03:04.3292576Z Selecting previously unselected package libfile-which-perl. 2021-05-17T17:03:04.3557903Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-17T17:03:04.3572283Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-17T17:03:04.3927969Z Selecting previously unselected package libfile-homedir-perl. 2021-05-17T17:03:04.4190410Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb 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2021-05-17T17:03:04.6786958Z Preparing to unpack .../006-libb-hooks-op-check-perl_0.22-1build2_amd64.deb ... 2021-05-17T17:03:04.6807279Z Unpacking libb-hooks-op-check-perl (0.22-1build2) ... 2021-05-17T17:03:04.7189005Z Selecting previously unselected package libdynaloader-functions-perl. 2021-05-17T17:03:04.7482101Z Preparing to unpack .../007-libdynaloader-functions-perl_0.003-1_all.deb ... 2021-05-17T17:03:04.7503285Z Unpacking libdynaloader-functions-perl (0.003-1) ... 2021-05-17T17:03:04.7954013Z Selecting previously unselected package libdevel-callchecker-perl. 2021-05-17T17:03:04.8246358Z Preparing to unpack .../008-libdevel-callchecker-perl_0.008-1ubuntu1_amd64.deb ... 2021-05-17T17:03:04.8261971Z Unpacking libdevel-callchecker-perl (0.008-1ubuntu1) ... 2021-05-17T17:03:04.8572596Z Selecting previously unselected package libparams-classify-perl. 2021-05-17T17:03:04.8834696Z Preparing to unpack .../009-libparams-classify-perl_0.015-1build2_amd64.deb ... 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Done 2021-05-17T17:03:40.9948645Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-17T17:03:41.0079412Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-17T17:03:41.0466286Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-17T17:03:41.0466867Z env: 2021-05-17T17:03:41.0467360Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:03:41.0467874Z TIC_DEPLOY_KEY: 2021-05-17T17:03:41.0468771Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:03:41.0470693Z GITHUB_PAT: *** 2021-05-17T17:03:41.0471588Z COVERALLS_TOKEN: *** 2021-05-17T17:03:41.0472137Z continue-on-error: true 2021-05-17T17:03:41.0472666Z VDIFFR_RUN_TESTS: 2021-05-17T17:03:41.0473191Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:03:41.0473693Z TZ: UTC 2021-05-17T17:03:41.0474112Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:03:41.0474573Z NOT_CRAN: true 2021-05-17T17:03:41.0474993Z ##[endgroup] 2021-05-17T17:03:41.1093791Z [command]sudo apt-get install -y texinfo 2021-05-17T17:03:41.2920055Z Reading package lists... 2021-05-17T17:03:41.4727124Z Building dependency tree... 2021-05-17T17:03:41.4751674Z Reading state information... 2021-05-17T17:03:41.7244809Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-17T17:03:41.7246732Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:03:42.0160214Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-17T17:03:42.0317599Z --2021-05-17 17:03:42-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-17T17:03:42.0479223Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-17T17:03:42.0529545Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-17T17:03:42.0719251Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-17T17:03:42.0722383Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-17T17:03:42.0725180Z --2021-05-17 17:03:42-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-17T17:03:42.1384184Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-17T17:03:42.2035061Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-17T17:03:42.4555804Z HTTP request sent, awaiting response... 302 Found 2021-05-17T17:03:42.4561688Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=3e66HSRQ%2BZ6cbyU8hmqdbsAkI7tSI4gnwMF4jVJyOZo%3D&st=2021-05-17T17%3A02%3A42Z&se=2021-05-17T17%3A08%3A42Z&sp=r [following] 2021-05-17T17:03:42.4568525Z --2021-05-17 17:03:42-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=3e66HSRQ%2BZ6cbyU8hmqdbsAkI7tSI4gnwMF4jVJyOZo%3D&st=2021-05-17T17%3A02%3A42Z&se=2021-05-17T17%3A08%3A42Z&sp=r 2021-05-17T17:03:42.4729641Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-17T17:03:42.5345033Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-17T17:03:42.7820697Z HTTP request sent, awaiting response... 200 OK 2021-05-17T17:03:42.7822235Z Length: 67306919 (64M) [application/octet-stream] 2021-05-17T17:03:42.7824102Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-17T17:03:43.3959781Z 2021-05-17T17:03:44.9278457Z 0K ........ ........ ........ ........ 49% 15.5M 2s 2021-05-17T17:03:46.0313924Z 32768K ........ ........ ........ ........ 99% 28.7M 0s 2021-05-17T17:03:46.0316960Z 65536K 100% 3.00M=3.2s 2021-05-17T17:03:46.0317603Z 2021-05-17T17:03:46.0323750Z 2021-05-17 17:03:46 (19.8 MB/s) - ‘TinyTeX.tar.gz’ saved [67306919/67306919] 2021-05-17T17:03:46.0324858Z 2021-05-17T17:03:48.1593955Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-17T17:03:48.1594937Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-17T17:03:48.4964664Z ##[group]Run tlmgr update --self 2021-05-17T17:03:48.4965331Z tlmgr update --self 2021-05-17T17:03:48.4966309Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-17T17:03:48.4967242Z tlmgr update --all 2021-05-17T17:03:48.5017414Z shell: /usr/bin/bash -e {0} 2021-05-17T17:03:48.5017876Z env: 2021-05-17T17:03:48.5018364Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:03:48.5018900Z TIC_DEPLOY_KEY: 2021-05-17T17:03:48.5019837Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:03:48.5021813Z GITHUB_PAT: *** 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2021-05-17T17:03:58.5535691Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/lCOZKJ49Xr/7GqescBp5d. 2021-05-17T17:03:58.5537602Z OK: optex.fmt/luatex 2021-05-17T17:03:58.5538989Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-17T17:03:58.5540643Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-17T17:03:59.9732013Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-17T17:03:59.9734610Z tlmgr: no updates available 2021-05-17T17:04:00.0874836Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-17T17:04:00.0875410Z with: 2021-05-17T17:04:00.0875852Z pandoc-version: 2.7.3 2021-05-17T17:04:00.0876283Z env: 2021-05-17T17:04:00.0876764Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:04:00.0877266Z TIC_DEPLOY_KEY: 2021-05-17T17:04:00.0878160Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:04:00.0880145Z GITHUB_PAT: *** 2021-05-17T17:04:00.0881040Z COVERALLS_TOKEN: *** 2021-05-17T17:04:00.0881576Z continue-on-error: true 2021-05-17T17:04:00.0882102Z VDIFFR_RUN_TESTS: 2021-05-17T17:04:00.0882626Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:04:00.0883118Z TZ: UTC 2021-05-17T17:04:00.0883545Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:04:00.0883989Z NOT_CRAN: true 2021-05-17T17:04:00.0884409Z ##[endgroup] 2021-05-17T17:04:00.6378438Z [command]sudo apt-get install -y gdebi-core 2021-05-17T17:04:00.7133888Z Reading package lists... 2021-05-17T17:04:00.9205571Z Building dependency tree... 2021-05-17T17:04:00.9230261Z Reading state information... 2021-05-17T17:04:01.2071727Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-17T17:04:01.2072941Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:01.2100213Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-17T17:04:01.3548247Z 2021-05-17T17:04:01.3725856Z Reading package lists... 0% 2021-05-17T17:04:01.3726643Z 2021-05-17T17:04:01.3782888Z Reading package lists... 100% 2021-05-17T17:04:01.3783557Z 2021-05-17T17:04:01.3784096Z 2021-05-17T17:04:01.3784807Z Reading package lists... Done 2021-05-17T17:04:01.3785190Z 2021-05-17T17:04:01.3785749Z Building dependency tree... 0% 2021-05-17T17:04:01.3786113Z 2021-05-17T17:04:01.4118679Z Building dependency tree... 0% 2021-05-17T17:04:01.4119434Z 2021-05-17T17:04:01.4120106Z Building dependency tree... 50% 2021-05-17T17:04:01.4120603Z 2021-05-17T17:04:01.5692170Z Building dependency tree... 50% 2021-05-17T17:04:01.5692612Z 2021-05-17T17:04:01.5693125Z Building dependency tree 2021-05-17T17:04:01.5693499Z 2021-05-17T17:04:01.5694028Z Reading state information... 0% 2021-05-17T17:04:01.5694399Z 2021-05-17T17:04:01.7671866Z Reading state information... 0% 2021-05-17T17:04:01.7672301Z 2021-05-17T17:04:01.7672545Z 2021-05-17T17:04:01.7673079Z Reading state information... 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2021-05-17T17:04:01.9901752Z 2021-05-17T17:04:01.9902336Z Reading state information... 87% 2021-05-17T17:04:02.0005213Z 2021-05-17T17:04:02.0006419Z Reading state information... 89% 2021-05-17T17:04:02.0046724Z 2021-05-17T17:04:02.0047332Z Reading state information... 91% 2021-05-17T17:04:02.0092626Z 2021-05-17T17:04:02.0093202Z Reading state information... 93% 2021-05-17T17:04:02.0139198Z 2021-05-17T17:04:02.0140229Z Reading state information... 95% 2021-05-17T17:04:02.0187565Z 2021-05-17T17:04:02.0188177Z Reading state information... 97% 2021-05-17T17:04:02.0232446Z 2021-05-17T17:04:02.0233089Z Reading state information... 99% 2021-05-17T17:04:02.3366694Z Selecting previously unselected package pandoc. 2021-05-17T17:04:02.4851735Z (Reading database ... 261973 files and directories currently installed.) 2021-05-17T17:04:02.4994053Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-17T17:04:02.5003994Z Unpacking pandoc (2.7.3-1) ... 2021-05-17T17:04:05.0533793Z Setting up pandoc (2.7.3-1) ... 2021-05-17T17:04:05.0563455Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:05.9610721Z 2021-05-17T17:04:05.9611721Z 2021-05-17T17:04:05.9612568Z Reading state information... Done 2021-05-17T17:04:05.9972994Z ##[group]Run git config user.name adigherman 2021-05-17T17:04:05.9973746Z git config user.name adigherman 2021-05-17T17:04:05.9974594Z git config user.email adig@jhu.edu 2021-05-17T17:04:06.0019270Z shell: /usr/bin/bash -e {0} 2021-05-17T17:04:06.0019724Z env: 2021-05-17T17:04:06.0020251Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:04:06.0020812Z TIC_DEPLOY_KEY: 2021-05-17T17:04:06.0021714Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:04:06.0023502Z GITHUB_PAT: *** 2021-05-17T17:04:06.0024532Z COVERALLS_TOKEN: *** 2021-05-17T17:04:06.0025089Z continue-on-error: true 2021-05-17T17:04:06.0025647Z VDIFFR_RUN_TESTS: 2021-05-17T17:04:06.0026194Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:04:06.0026712Z TZ: UTC 2021-05-17T17:04:06.0027173Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:04:06.0027647Z NOT_CRAN: true 2021-05-17T17:04:06.0028095Z ##[endgroup] 2021-05-17T17:04:06.0308869Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-17T17:04:06.0309565Z env: 2021-05-17T17:04:06.0310084Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:04:06.0310595Z TIC_DEPLOY_KEY: 2021-05-17T17:04:06.0311489Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:04:06.0313400Z GITHUB_PAT: *** 2021-05-17T17:04:06.0314283Z COVERALLS_TOKEN: *** 2021-05-17T17:04:06.0314826Z continue-on-error: true 2021-05-17T17:04:06.0315345Z VDIFFR_RUN_TESTS: 2021-05-17T17:04:06.0315885Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:04:06.0316383Z TZ: UTC 2021-05-17T17:04:06.0316803Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:04:06.0317266Z NOT_CRAN: true 2021-05-17T17:04:06.0317673Z ##[endgroup] 2021-05-17T17:04:06.2461920Z Reading package lists... 2021-05-17T17:04:06.4253727Z Building dependency tree... 2021-05-17T17:04:06.4277334Z Reading state information... 2021-05-17T17:04:06.5914152Z The following additional packages will be installed: 2021-05-17T17:04:06.5921089Z cmake-data libjsoncpp1 librhash0 2021-05-17T17:04:06.5928100Z Suggested packages: 2021-05-17T17:04:06.5929011Z cmake-doc ninja-build 2021-05-17T17:04:06.6421308Z The following NEW packages will be installed: 2021-05-17T17:04:06.6434805Z cmake cmake-data libjsoncpp1 librhash0 2021-05-17T17:04:06.6738707Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:06.6739788Z Need to get 5470 kB of archives. 2021-05-17T17:04:06.6740740Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-17T17:04:06.6742727Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-17T17:04:06.7225196Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-17T17:04:06.7243281Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-17T17:04:06.7280116Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-17T17:04:07.2687379Z Fetched 5470 kB in 0s (41.7 MB/s) 2021-05-17T17:04:07.3108474Z Selecting previously unselected package cmake-data. 2021-05-17T17:04:07.3183979Z (Reading database ... 2021-05-17T17:04:07.3184957Z (Reading database ... 5% 2021-05-17T17:04:07.3185708Z (Reading database ... 10% 2021-05-17T17:04:07.3186454Z (Reading database ... 15% 2021-05-17T17:04:07.3187239Z (Reading database ... 20% 2021-05-17T17:04:07.3187963Z (Reading database ... 25% 2021-05-17T17:04:07.3188693Z (Reading database ... 30% 2021-05-17T17:04:07.3189399Z (Reading database ... 35% 2021-05-17T17:04:07.3190114Z (Reading database ... 40% 2021-05-17T17:04:07.3190836Z (Reading database ... 45% 2021-05-17T17:04:07.3191556Z (Reading database ... 50% 2021-05-17T17:04:07.3213405Z (Reading database ... 55% 2021-05-17T17:04:07.3254922Z (Reading database ... 60% 2021-05-17T17:04:07.3300301Z (Reading database ... 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librhash0:amd64. 2021-05-17T17:04:08.1355642Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-17T17:04:08.1366873Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-17T17:04:08.1726397Z Selecting previously unselected package cmake. 2021-05-17T17:04:08.2023851Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-17T17:04:08.2036809Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-17T17:04:08.6848209Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-17T17:04:08.6878234Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-17T17:04:08.7315498Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-17T17:04:08.7349437Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-17T17:04:08.7386733Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:10.0921254Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:12.4581062Z Reading package lists... 2021-05-17T17:04:12.6564507Z Building dependency tree... 2021-05-17T17:04:12.6585984Z Reading state information... 2021-05-17T17:04:12.8338694Z Suggested packages: 2021-05-17T17:04:12.8341193Z libssh-doc 2021-05-17T17:04:12.8950034Z The following NEW packages will be installed: 2021-05-17T17:04:12.8953074Z libssh-dev 2021-05-17T17:04:12.9196020Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:12.9197194Z Need to get 219 kB of archives. 2021-05-17T17:04:12.9198463Z After this operation, 1127 kB of additional disk space will be used. 2021-05-17T17:04:12.9200598Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-17T17:04:13.3761695Z Fetched 219 kB in 0s (7332 kB/s) 2021-05-17T17:04:13.4090972Z Selecting previously unselected package libssh-dev:amd64. 2021-05-17T17:04:13.4169601Z (Reading database ... 2021-05-17T17:04:13.4171070Z (Reading database ... 5% 2021-05-17T17:04:13.4171638Z (Reading database ... 10% 2021-05-17T17:04:13.4172223Z (Reading database ... 15% 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and directories currently installed.) 2021-05-17T17:04:13.5604497Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-17T17:04:13.5616069Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T17:04:13.6532217Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T17:04:16.0426438Z Reading package lists... 2021-05-17T17:04:16.2396928Z Building dependency tree... 2021-05-17T17:04:16.2416170Z Reading state information... 2021-05-17T17:04:16.4766449Z The following NEW packages will be installed: 2021-05-17T17:04:16.4773364Z jags 2021-05-17T17:04:16.5053420Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:16.5055044Z Need to get 1562 kB of archives. 2021-05-17T17:04:16.5056472Z After this operation, 3615 kB of additional disk space will be used. 2021-05-17T17:04:16.5059323Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-17T17:04:17.0242136Z Fetched 1562 kB in 0s (26.9 MB/s) 2021-05-17T17:04:17.0701814Z Selecting previously unselected package jags. 2021-05-17T17:04:17.0782990Z (Reading database ... 2021-05-17T17:04:17.0783884Z (Reading database ... 5% 2021-05-17T17:04:17.0784434Z (Reading database ... 10% 2021-05-17T17:04:17.0785405Z (Reading database ... 15% 2021-05-17T17:04:17.0785952Z (Reading database ... 20% 2021-05-17T17:04:17.0786491Z (Reading database ... 25% 2021-05-17T17:04:17.0787027Z (Reading database ... 30% 2021-05-17T17:04:17.0787549Z (Reading database ... 35% 2021-05-17T17:04:17.0788078Z (Reading database ... 40% 2021-05-17T17:04:17.0788602Z (Reading database ... 45% 2021-05-17T17:04:17.0789128Z (Reading database ... 50% 2021-05-17T17:04:17.0813044Z (Reading database ... 55% 2021-05-17T17:04:17.6372407Z (Reading database ... 60% 2021-05-17T17:04:17.6373564Z (Reading database ... 65% 2021-05-17T17:04:17.6374640Z (Reading database ... 70% 2021-05-17T17:04:17.6375250Z (Reading database ... 75% 2021-05-17T17:04:17.6375790Z (Reading database ... 80% 2021-05-17T17:04:17.6376385Z (Reading database ... 85% 2021-05-17T17:04:17.6376914Z (Reading database ... 90% 2021-05-17T17:04:17.6377798Z (Reading database ... 95% 2021-05-17T17:04:17.6378341Z (Reading database ... 100% 2021-05-17T17:04:17.6379159Z (Reading database ... 264783 files and directories currently installed.) 2021-05-17T17:04:17.6380724Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-17T17:04:17.6381575Z Unpacking jags (4.3.0-3build1) ... 2021-05-17T17:04:17.6382309Z Setting up jags (4.3.0-3build1) ... 2021-05-17T17:04:17.6383138Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:18.5957805Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:20.9858078Z Reading package lists... 2021-05-17T17:04:21.1910758Z Building dependency tree... 2021-05-17T17:04:21.1935690Z Reading state information... 2021-05-17T17:04:21.3634168Z The following additional packages will be installed: 2021-05-17T17:04:21.3637198Z libnode64 libuv1-dev 2021-05-17T17:04:21.4269180Z The following NEW packages will be installed: 2021-05-17T17:04:21.4279981Z libnode-dev libnode64 libuv1-dev 2021-05-17T17:04:21.4590119Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:21.4591176Z Need to get 6239 kB of archives. 2021-05-17T17:04:21.4591996Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-17T17:04:21.4594042Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-17T17:04:21.4663523Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-17T17:04:21.5579419Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-17T17:04:22.0327329Z Fetched 6239 kB in 0s (46.1 MB/s) 2021-05-17T17:04:22.0652763Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-17T17:04:22.0728712Z (Reading database ... 2021-05-17T17:04:22.0729566Z (Reading database ... 5% 2021-05-17T17:04:22.0730973Z (Reading database ... 10% 2021-05-17T17:04:22.0731761Z (Reading database ... 15% 2021-05-17T17:04:22.0732506Z (Reading database ... 20% 2021-05-17T17:04:22.0733246Z (Reading database ... 25% 2021-05-17T17:04:22.0733972Z (Reading database ... 30% 2021-05-17T17:04:22.0734716Z (Reading database ... 35% 2021-05-17T17:04:22.0735458Z (Reading database ... 40% 2021-05-17T17:04:22.0736186Z (Reading database ... 45% 2021-05-17T17:04:22.0736919Z (Reading database ... 50% 2021-05-17T17:04:22.0772757Z (Reading database ... 55% 2021-05-17T17:04:22.0814461Z (Reading database ... 60% 2021-05-17T17:04:22.0865998Z (Reading database ... 65% 2021-05-17T17:04:22.1016875Z (Reading database ... 70% 2021-05-17T17:04:22.1167482Z (Reading database ... 75% 2021-05-17T17:04:22.1513851Z (Reading database ... 80% 2021-05-17T17:04:22.1907246Z (Reading database ... 85% 2021-05-17T17:04:22.2078574Z (Reading database ... 90% 2021-05-17T17:04:22.2172708Z (Reading database ... 95% 2021-05-17T17:04:22.2173594Z (Reading database ... 100% 2021-05-17T17:04:22.2174582Z (Reading database ... 264923 files and directories currently installed.) 2021-05-17T17:04:22.2300063Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-17T17:04:22.2309833Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T17:04:22.2772585Z Selecting previously unselected package libnode64:amd64. 2021-05-17T17:04:22.3012354Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T17:04:22.3040720Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:04:23.0532661Z Selecting previously unselected package libnode-dev:amd64. 2021-05-17T17:04:23.0790248Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T17:04:23.0800297Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:04:23.1923128Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T17:04:23.1955491Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:04:23.1985496Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T17:04:23.2025759Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:25.6976091Z Reading package lists... 2021-05-17T17:04:25.8880238Z Building dependency tree... 2021-05-17T17:04:25.8901255Z Reading state information... 2021-05-17T17:04:26.0722544Z The following additional packages will be installed: 2021-05-17T17:04:26.0726267Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T17:04:26.0731782Z Suggested packages: 2021-05-17T17:04:26.0732725Z libfftw3-doc 2021-05-17T17:04:26.1250273Z The following NEW packages will be installed: 2021-05-17T17:04:26.1256566Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T17:04:26.1541809Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:26.1542657Z Need to get 3986 kB of archives. 2021-05-17T17:04:26.1543461Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-17T17:04:26.1545456Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-17T17:04:26.1718205Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-17T17:04:26.1905639Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-17T17:04:26.2033403Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-17T17:04:26.2040152Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-17T17:04:26.7235254Z Fetched 3986 kB in 0s (41.1 MB/s) 2021-05-17T17:04:26.7652979Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-17T17:04:26.7735077Z (Reading database ... 2021-05-17T17:04:26.7736078Z (Reading database ... 5% 2021-05-17T17:04:26.7737177Z (Reading database ... 10% 2021-05-17T17:04:26.7737790Z (Reading database ... 15% 2021-05-17T17:04:26.7738330Z (Reading database ... 20% 2021-05-17T17:04:26.7738943Z (Reading database ... 25% 2021-05-17T17:04:26.7741767Z (Reading database ... 30% 2021-05-17T17:04:26.7742376Z (Reading database ... 35% 2021-05-17T17:04:26.7742924Z (Reading database ... 40% 2021-05-17T17:04:26.7743453Z (Reading database ... 45% 2021-05-17T17:04:26.7743995Z (Reading database ... 50% 2021-05-17T17:04:26.7796587Z (Reading database ... 55% 2021-05-17T17:04:26.7855495Z (Reading database ... 60% 2021-05-17T17:04:26.7904508Z (Reading database ... 65% 2021-05-17T17:04:26.8053759Z (Reading database ... 70% 2021-05-17T17:04:26.8195357Z (Reading database ... 75% 2021-05-17T17:04:26.8520188Z (Reading database ... 80% 2021-05-17T17:04:26.8887942Z (Reading database ... 85% 2021-05-17T17:04:26.9069120Z (Reading database ... 90% 2021-05-17T17:04:26.9157796Z (Reading database ... 95% 2021-05-17T17:04:26.9158393Z (Reading database ... 100% 2021-05-17T17:04:26.9159230Z (Reading database ... 265059 files and directories currently installed.) 2021-05-17T17:04:26.9302172Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:04:26.9328424Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.0012457Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-17T17:04:27.0260555Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:04:27.0274515Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.1372646Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-17T17:04:27.1629794Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:04:27.1640698Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.2882073Z Selecting previously unselected package libfftw3-bin. 2021-05-17T17:04:27.3203242Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:04:27.3215871Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.3667386Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-17T17:04:27.3911161Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T17:04:27.3924606Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.7160143Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.7197733Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.7241209Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.7284866Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.7327503Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T17:04:27.7378017Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:28.6522654Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:31.0724121Z Reading package lists... 2021-05-17T17:04:31.2554289Z Building dependency tree... 2021-05-17T17:04:31.2573403Z Reading state information... 2021-05-17T17:04:31.4246682Z The following additional packages will be installed: 2021-05-17T17:04:31.4248985Z libdcmtk14 2021-05-17T17:04:31.4773405Z The following NEW packages will be installed: 2021-05-17T17:04:31.4783524Z dcmtk libdcmtk14 2021-05-17T17:04:31.5047812Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:31.5048674Z Need to get 5546 kB of archives. 2021-05-17T17:04:31.5049484Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-17T17:04:31.5051710Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-17T17:04:31.5818709Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-17T17:04:32.0687157Z Fetched 5546 kB in 0s (48.6 MB/s) 2021-05-17T17:04:32.1031237Z Selecting previously unselected package libdcmtk14. 2021-05-17T17:04:32.1108897Z (Reading database ... 2021-05-17T17:04:32.1109536Z (Reading database ... 5% 2021-05-17T17:04:32.1112923Z (Reading database ... 10% 2021-05-17T17:04:32.1113478Z (Reading database ... 15% 2021-05-17T17:04:32.1114038Z (Reading database ... 20% 2021-05-17T17:04:32.1114596Z (Reading database ... 25% 2021-05-17T17:04:32.1115136Z (Reading database ... 30% 2021-05-17T17:04:32.1115657Z (Reading database ... 35% 2021-05-17T17:04:32.1116220Z (Reading database ... 40% 2021-05-17T17:04:32.1116788Z (Reading database ... 45% 2021-05-17T17:04:32.1117324Z (Reading database ... 50% 2021-05-17T17:04:32.1219996Z (Reading database ... 55% 2021-05-17T17:04:32.1263169Z (Reading database ... 60% 2021-05-17T17:04:32.1314487Z (Reading database ... 65% 2021-05-17T17:04:32.1460529Z (Reading database ... 70% 2021-05-17T17:04:32.1601231Z (Reading database ... 75% 2021-05-17T17:04:32.1921515Z (Reading database ... 80% 2021-05-17T17:04:32.2300059Z (Reading database ... 85% 2021-05-17T17:04:32.2474547Z (Reading database ... 90% 2021-05-17T17:04:32.2564503Z (Reading database ... 95% 2021-05-17T17:04:32.2565827Z (Reading database ... 100% 2021-05-17T17:04:32.2567458Z (Reading database ... 265150 files and directories currently installed.) 2021-05-17T17:04:32.2695826Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-17T17:04:32.2716042Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T17:04:32.8612120Z Selecting previously unselected package dcmtk. 2021-05-17T17:04:32.8869520Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-17T17:04:32.8936158Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-17T17:04:33.0733433Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T17:04:33.0770409Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-17T17:04:33.0914532Z Adding `dcmtk' group to system ... 2021-05-17T17:04:33.1559216Z Adding `dcmtk' user to system ... 2021-05-17T17:04:33.2577324Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-17T17:04:33.5464567Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:35.5021497Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:37.9047137Z Reading package lists... 2021-05-17T17:04:38.0763564Z Building dependency tree... 2021-05-17T17:04:38.0783172Z Reading state information... 2021-05-17T17:04:38.3321774Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-17T17:04:38.3323293Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:38.4055700Z Reading package lists... 2021-05-17T17:04:38.5845587Z Building dependency tree... 2021-05-17T17:04:38.5864484Z Reading state information... 2021-05-17T17:04:38.8709426Z libpng-dev is already the newest version (1.6.37-2). 2021-05-17T17:04:38.8711086Z libpng-dev set to manually installed. 2021-05-17T17:04:38.8712215Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:38.9446640Z Reading package lists... 2021-05-17T17:04:39.1502779Z Building dependency tree... 2021-05-17T17:04:39.1522538Z Reading state information... 2021-05-17T17:04:39.3252682Z The following additional packages will be installed: 2021-05-17T17:04:39.3255934Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-17T17:04:39.3261427Z Suggested packages: 2021-05-17T17:04:39.3262919Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-17T17:04:39.3264746Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-17T17:04:39.3266114Z fonts-arphic-uming fonts-nanum 2021-05-17T17:04:39.3815711Z The following NEW packages will be installed: 2021-05-17T17:04:39.3818045Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-17T17:04:39.3820761Z libpoppler97 poppler-data 2021-05-17T17:04:39.4096262Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:39.4097480Z Need to get 2582 kB of archives. 2021-05-17T17:04:39.4098754Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-17T17:04:39.4100681Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-17T17:04:39.4591735Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-17T17:04:39.4617613Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-17T17:04:39.4763139Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-17T17:04:39.4770527Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-17T17:04:39.4776992Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-17T17:04:40.6431176Z Fetched 2582 kB in 0s (28.5 MB/s) 2021-05-17T17:04:40.6435161Z Selecting previously unselected package poppler-data. 2021-05-17T17:04:40.6436455Z (Reading database ... 2021-05-17T17:04:40.6437138Z (Reading database ... 5% 2021-05-17T17:04:40.6437784Z (Reading database ... 10% 2021-05-17T17:04:40.6438451Z (Reading database ... 15% 2021-05-17T17:04:40.6439117Z (Reading database ... 20% 2021-05-17T17:04:40.6439990Z (Reading database ... 25% 2021-05-17T17:04:40.6440677Z (Reading database ... 30% 2021-05-17T17:04:40.6441335Z (Reading database ... 35% 2021-05-17T17:04:40.6441969Z (Reading database ... 40% 2021-05-17T17:04:40.6442617Z (Reading database ... 45% 2021-05-17T17:04:40.6443249Z (Reading database ... 50% 2021-05-17T17:04:40.6443903Z (Reading database ... 55% 2021-05-17T17:04:40.6444552Z (Reading database ... 60% 2021-05-17T17:04:40.6446509Z (Reading database ... 65% 2021-05-17T17:04:40.6447232Z (Reading database ... 70% 2021-05-17T17:04:40.6447880Z (Reading database ... 75% 2021-05-17T17:04:40.6448546Z (Reading database ... 80% 2021-05-17T17:04:40.6449206Z (Reading database ... 85% 2021-05-17T17:04:40.6449860Z (Reading database ... 90% 2021-05-17T17:04:40.6450771Z (Reading database ... 95% 2021-05-17T17:04:40.6451416Z (Reading database ... 100% 2021-05-17T17:04:40.6452368Z (Reading database ... 265385 files and directories currently installed.) 2021-05-17T17:04:40.6454062Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-17T17:04:40.6455191Z Unpacking poppler-data (0.4.9-2) ... 2021-05-17T17:04:40.6456405Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-17T17:04:40.6457804Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-17T17:04:40.6459063Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T17:04:40.6461491Z Selecting previously unselected package libpoppler97:amd64. 2021-05-17T17:04:40.6462957Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:04:40.6464173Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.6893059Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-17T17:04:40.7185110Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:04:40.7205482Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.7533310Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-17T17:04:40.7820938Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:04:40.7834152Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.8158008Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-17T17:04:40.8397079Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T17:04:40.8414193Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.9076887Z Setting up poppler-data (0.4.9-2) ... 2021-05-17T17:04:40.9206734Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T17:04:40.9243051Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.9272846Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.9305535Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.9339300Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T17:04:40.9379844Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T17:04:41.0884857Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:43.4889528Z Reading package lists... 2021-05-17T17:04:43.6646813Z Building dependency tree... 2021-05-17T17:04:43.6666588Z Reading state information... 2021-05-17T17:04:43.8387522Z The following additional packages will be installed: 2021-05-17T17:04:43.8391905Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-17T17:04:43.8397275Z Suggested packages: 2021-05-17T17:04:43.8398201Z libhdf5-doc 2021-05-17T17:04:43.8893215Z The following NEW packages will be installed: 2021-05-17T17:04:43.8897595Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-17T17:04:43.8900585Z libsz2 2021-05-17T17:04:43.9157376Z 0 upgraded, 7 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:43.9158191Z Need to get 4074 kB of archives. 2021-05-17T17:04:43.9159004Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-17T17:04:43.9161293Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-17T17:04:43.9202697Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-17T17:04:43.9229014Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-17T17:04:43.9235898Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-17T17:04:44.0040063Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-17T17:04:44.0162429Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-17T17:04:44.0227918Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-17T17:04:44.6231463Z Fetched 4074 kB in 0s (15.1 MB/s) 2021-05-17T17:04:44.6594373Z Selecting previously unselected package hdf5-helpers. 2021-05-17T17:04:44.6682718Z (Reading database ... 2021-05-17T17:04:44.6683720Z (Reading database ... 5% 2021-05-17T17:04:44.6684488Z (Reading database ... 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2021-05-17T17:04:44.7994577Z (Reading database ... 265945 files and directories currently installed.) 2021-05-17T17:04:44.8112191Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:04:44.8130183Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:44.8417492Z Selecting previously unselected package libaec0:amd64. 2021-05-17T17:04:44.8720614Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-17T17:04:44.8830102Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-17T17:04:44.9172152Z Selecting previously unselected package libsz2:amd64. 2021-05-17T17:04:44.9436763Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-17T17:04:44.9453544Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-17T17:04:44.9813519Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-17T17:04:45.0094641Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:04:45.0105454Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.1933792Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-17T17:04:45.2177126Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:04:45.2196392Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.2654520Z Selecting previously unselected package libaec-dev:amd64. 2021-05-17T17:04:45.2893885Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-17T17:04:45.2913047Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T17:04:45.3292430Z Selecting previously unselected package libhdf5-dev. 2021-05-17T17:04:45.3527316Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T17:04:45.3539288Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.7153650Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.7186117Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-17T17:04:45.7218833Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-17T17:04:45.7255963Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T17:04:45.7278895Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.7312377Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.7343751Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T17:04:45.7424034Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-17T17:04:45.7453669Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:46.6090483Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:48.9859603Z Reading package lists... 2021-05-17T17:04:49.1723749Z Building dependency tree... 2021-05-17T17:04:49.1743589Z Reading state information... 2021-05-17T17:04:49.3504129Z The following additional packages will be installed: 2021-05-17T17:04:49.3508358Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-17T17:04:49.4097658Z The following NEW packages will be installed: 2021-05-17T17:04:49.4101512Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-17T17:04:49.4103152Z mesa-common-dev 2021-05-17T17:04:49.4357889Z 0 upgraded, 6 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:49.4358742Z Need to get 1761 kB of archives. 2021-05-17T17:04:49.4359550Z After this operation, 5442 kB of additional disk space will be used. 2021-05-17T17:04:49.4361608Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-17T17:04:49.4429221Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-17T17:04:49.4434518Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-17T17:04:49.4466803Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-17T17:04:49.4509569Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-17T17:04:49.4568012Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-17T17:04:49.9381154Z Fetched 1761 kB in 0s (27.3 MB/s) 2021-05-17T17:04:49.9786654Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-17T17:04:49.9864785Z (Reading database ... 2021-05-17T17:04:49.9865450Z (Reading database ... 5% 2021-05-17T17:04:49.9866002Z (Reading database ... 10% 2021-05-17T17:04:49.9866538Z (Reading database ... 15% 2021-05-17T17:04:49.9867079Z (Reading database ... 20% 2021-05-17T17:04:49.9867653Z (Reading database ... 25% 2021-05-17T17:04:49.9868190Z (Reading database ... 30% 2021-05-17T17:04:49.9868728Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T17:04:50.1745713Z Selecting previously unselected package libglx-dev:amd64. 2021-05-17T17:04:50.2047804Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:04:50.2060044Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:04:50.2492681Z Selecting previously unselected package libgl-dev:amd64. 2021-05-17T17:04:50.2733831Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:04:50.2752312Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:04:50.3301825Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-17T17:04:50.3573154Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-17T17:04:50.3594512Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T17:04:50.4052014Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-17T17:04:50.4338275Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-17T17:04:50.4350528Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T17:04:50.4892175Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-17T17:04:50.5168321Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:04:50.5177164Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:04:50.7097890Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T17:04:50.7138223Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:04:50.7167338Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T17:04:50.7201416Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:04:50.7228902Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T17:04:50.7260103Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:04:50.7288792Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:52.3716479Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:54.8107050Z Reading package lists... 2021-05-17T17:04:54.9935195Z Building dependency tree... 2021-05-17T17:04:54.9956468Z Reading state information... 2021-05-17T17:04:55.1675277Z The following additional packages will be installed: 2021-05-17T17:04:55.1678334Z libprotobuf-lite17 libprotoc17 2021-05-17T17:04:55.2220107Z The following NEW packages will be installed: 2021-05-17T17:04:55.2228426Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-17T17:04:55.2230150Z protobuf-compiler 2021-05-17T17:04:55.2471716Z 0 upgraded, 5 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:04:55.2472953Z Need to get 2754 kB of archives. 2021-05-17T17:04:55.2474281Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-17T17:04:55.2476383Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-17T17:04:55.2633879Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-17T17:04:55.2954215Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-17T17:04:55.3158303Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-17T17:04:55.3262611Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-17T17:04:55.8032510Z Fetched 2754 kB in 0s (27.8 MB/s) 2021-05-17T17:04:55.8395511Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-17T17:04:55.8474655Z (Reading database ... 2021-05-17T17:04:55.8475629Z (Reading database ... 5% 2021-05-17T17:04:55.8476394Z (Reading database ... 10% 2021-05-17T17:04:55.8477155Z (Reading database ... 15% 2021-05-17T17:04:55.8477884Z (Reading 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2021-05-17T17:04:56.0084216Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:04:56.0110007Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.0508006Z Selecting previously unselected package libprotoc17:amd64. 2021-05-17T17:04:56.0820530Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:04:56.0832195Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.1815103Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-17T17:04:56.2126359Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:04:56.2142005Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.3985741Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-17T17:04:56.4282412Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:04:56.4294423Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.5652649Z Selecting previously unselected package protobuf-compiler. 2021-05-17T17:04:56.5905590Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T17:04:56.5918442Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.6660526Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.6697633Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.6735938Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.6772577Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.6802108Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T17:04:56.6837450Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:04:57.5308878Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:04:59.9304400Z Reading package lists... 2021-05-17T17:05:00.1301549Z Building dependency tree... 2021-05-17T17:05:00.1323137Z Reading state information... 2021-05-17T17:05:00.3180953Z The following additional packages will be installed: 2021-05-17T17:05:00.3183144Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-17T17:05:00.3184731Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-17T17:05:00.3185998Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-17T17:05:00.3187533Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-17T17:05:00.3189067Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-17T17:05:00.3190471Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T17:05:00.3191980Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T17:05:00.3193496Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T17:05:00.3194935Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T17:05:00.3196375Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T17:05:00.3198207Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T17:05:00.3199668Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T17:05:00.3201037Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T17:05:00.3202391Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T17:05:00.3203263Z Suggested packages: 2021-05-17T17:05:00.3204495Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-17T17:05:00.3205960Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-17T17:05:00.3207570Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-17T17:05:00.3209040Z nvidia-legacy-304xx-vdpau-driver 2021-05-17T17:05:00.4028133Z The following NEW packages will be installed: 2021-05-17T17:05:00.4032096Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-17T17:05:00.4033495Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-17T17:05:00.4036505Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-17T17:05:00.4039217Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-17T17:05:00.4043197Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-17T17:05:00.4048839Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T17:05:00.4051842Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T17:05:00.4055759Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T17:05:00.4057126Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T17:05:00.4060004Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T17:05:00.4062698Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T17:05:00.4065314Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T17:05:00.4069292Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T17:05:00.4074689Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T17:05:00.4449190Z 0 upgraded, 76 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:00.4454385Z Need to get 47.1 MB of archives. 2021-05-17T17:05:00.4455254Z After this operation, 195 MB of additional disk space will be used. 2021-05-17T17:05:00.4467922Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-17T17:05:00.4833100Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-17T17:05:00.4844853Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-17T17:05:00.4851798Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-17T17:05:00.4860233Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-17T17:05:00.4868352Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-17T17:05:00.4880180Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-17T17:05:00.4918371Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-17T17:05:00.6135264Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-17T17:05:00.6142453Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-17T17:05:00.6164148Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-17T17:05:00.6182894Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-17T17:05:00.6189092Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-17T17:05:00.6195677Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-17T17:05:00.6206757Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-17T17:05:00.6219754Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-17T17:05:00.6233137Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-17T17:05:00.6276807Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-17T17:05:00.6308157Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-17T17:05:00.6310803Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-17T17:05:00.6318407Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-17T17:05:00.6399689Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-17T17:05:00.6553735Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-17T17:05:00.6599086Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-17T17:05:00.6607524Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-17T17:05:00.6656458Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-17T17:05:00.7350477Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-17T17:05:00.7357320Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-17T17:05:00.7362895Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-17T17:05:00.7383532Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-17T17:05:00.7405283Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-17T17:05:00.7416549Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-17T17:05:00.7445997Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-17T17:05:00.7469884Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-17T17:05:00.7565429Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-17T17:05:00.7608714Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-17T17:05:00.7802625Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-17T17:05:00.7815400Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-17T17:05:00.9815625Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-17T17:05:00.9831059Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-17T17:05:00.9842793Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-17T17:05:00.9856118Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-17T17:05:00.9872408Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-17T17:05:00.9885331Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-17T17:05:00.9897753Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-17T17:05:00.9997140Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-17T17:05:01.0013760Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-17T17:05:01.0045941Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-17T17:05:01.0057921Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-17T17:05:01.0213176Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-17T17:05:01.0258940Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-17T17:05:01.0272364Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-17T17:05:01.0279520Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-17T17:05:01.0286867Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-17T17:05:01.0299227Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-17T17:05:01.0307212Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-17T17:05:01.0352233Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-17T17:05:01.0391284Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-17T17:05:01.0396846Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-17T17:05:01.0460499Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-17T17:05:01.0470768Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-17T17:05:01.0489346Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-17T17:05:01.0518919Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-17T17:05:01.0560507Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-17T17:05:01.0626493Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-17T17:05:01.0640802Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-17T17:05:01.0653048Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-17T17:05:01.0868136Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-17T17:05:01.0877926Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-17T17:05:01.1144955Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-17T17:05:01.1156893Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-17T17:05:01.1165430Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-17T17:05:01.1544329Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-17T17:05:01.2001340Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-17T17:05:01.2142830Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-17T17:05:01.2150579Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-17T17:05:01.8627957Z Fetched 47.1 MB in 1s (58.8 MB/s) 2021-05-17T17:05:01.8989187Z Selecting previously unselected package libaom0:amd64. 2021-05-17T17:05:01.9068877Z (Reading database ... 2021-05-17T17:05:01.9069803Z (Reading database ... 5% 2021-05-17T17:05:01.9070484Z (Reading database ... 10% 2021-05-17T17:05:01.9071411Z (Reading database ... 15% 2021-05-17T17:05:01.9072072Z (Reading database ... 20% 2021-05-17T17:05:01.9072722Z (Reading database ... 25% 2021-05-17T17:05:01.9073348Z (Reading database ... 30% 2021-05-17T17:05:01.9073995Z (Reading database ... 35% 2021-05-17T17:05:01.9074639Z (Reading database ... 40% 2021-05-17T17:05:01.9075265Z (Reading database ... 45% 2021-05-17T17:05:01.9075913Z (Reading database ... 50% 2021-05-17T17:05:01.9119762Z (Reading database ... 55% 2021-05-17T17:05:01.9170964Z (Reading database ... 60% 2021-05-17T17:05:01.9216975Z (Reading database ... 65% 2021-05-17T17:05:01.9358907Z (Reading database ... 70% 2021-05-17T17:05:01.9495423Z (Reading database ... 75% 2021-05-17T17:05:01.9830086Z (Reading database ... 80% 2021-05-17T17:05:02.0190661Z (Reading database ... 85% 2021-05-17T17:05:02.0351139Z (Reading database ... 90% 2021-05-17T17:05:02.0435651Z (Reading database ... 95% 2021-05-17T17:05:02.0436298Z (Reading database ... 100% 2021-05-17T17:05:02.0437133Z (Reading database ... 266807 files and directories currently installed.) 2021-05-17T17:05:02.0556924Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-17T17:05:02.0594636Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-17T17:05:02.2124201Z Selecting previously unselected package libva2:amd64. 2021-05-17T17:05:02.2398526Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-17T17:05:02.2414729Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-17T17:05:02.2723433Z Selecting previously unselected package libva-drm2:amd64. 2021-05-17T17:05:02.3046468Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-17T17:05:02.3061420Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-17T17:05:02.3364317Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-17T17:05:02.3632157Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-17T17:05:02.3645346Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T17:05:02.3937843Z Selecting previously unselected package libvdpau1:amd64. 2021-05-17T17:05:02.4250841Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-17T17:05:02.4263385Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T17:05:02.4692601Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-17T17:05:02.4906025Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-17T17:05:02.4920860Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T17:05:02.5233991Z Selecting previously unselected package libavutil56:amd64. 2021-05-17T17:05:02.5547435Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T17:05:02.5561328Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:02.6212112Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-17T17:05:02.6524709Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-17T17:05:02.6534915Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-17T17:05:03.4427335Z Selecting previously unselected package libgsm1:amd64. 2021-05-17T17:05:03.4723167Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-17T17:05:03.4734713Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-17T17:05:03.5092017Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-17T17:05:03.5337991Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-17T17:05:03.5351482Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-17T17:05:03.5892481Z Selecting previously unselected package libopus0:amd64. 2021-05-17T17:05:03.6156254Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-17T17:05:03.6171270Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-17T17:05:03.6692998Z Selecting previously unselected package libshine3:amd64. 2021-05-17T17:05:03.6946562Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-17T17:05:03.6963768Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-17T17:05:03.7331658Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-17T17:05:03.7584970Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-17T17:05:03.7597131Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-17T17:05:03.7931956Z Selecting previously unselected package libspeex1:amd64. 2021-05-17T17:05:03.8205508Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 2021-05-17T17:05:03.8222856Z Unpacking libspeex1:amd64 (1.2~rc1.2-1.1ubuntu1) ... 2021-05-17T17:05:03.8612660Z Selecting previously unselected package libsoxr0:amd64. 2021-05-17T17:05:03.8902549Z Preparing to unpack .../14-libsoxr0_0.1.3-2build1_amd64.deb ... 2021-05-17T17:05:03.8922824Z Unpacking libsoxr0:amd64 (0.1.3-2build1) ... 2021-05-17T17:05:03.9332442Z Selecting previously unselected package libswresample3:amd64. 2021-05-17T17:05:03.9644665Z Preparing to unpack .../15-libswresample3_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T17:05:03.9665233Z Unpacking libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:04.0091740Z Selecting previously unselected package libtheora0:amd64. 2021-05-17T17:05:04.0346625Z Preparing to unpack .../16-libtheora0_1.1.1+dfsg.1-15ubuntu2_amd64.deb ... 2021-05-17T17:05:04.0368842Z Unpacking libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T17:05:04.0891726Z Selecting previously unselected package libtwolame0:amd64. 2021-05-17T17:05:04.1144158Z Preparing to unpack .../17-libtwolame0_0.4.0-2_amd64.deb ... 2021-05-17T17:05:04.1156472Z Unpacking libtwolame0:amd64 (0.4.0-2) ... 2021-05-17T17:05:04.1533282Z Selecting previously unselected package libvorbisenc2:amd64. 2021-05-17T17:05:04.1829289Z Preparing to unpack .../18-libvorbisenc2_1.3.6-2ubuntu1_amd64.deb ... 2021-05-17T17:05:04.1841178Z Unpacking libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-17T17:05:04.2211310Z Selecting previously unselected package libwavpack1:amd64. 2021-05-17T17:05:04.2501945Z Preparing to unpack .../19-libwavpack1_5.2.0-1ubuntu0.1_amd64.deb ... 2021-05-17T17:05:04.2518477Z Unpacking libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-17T17:05:04.2891292Z Selecting previously unselected package libx264-155:amd64. 2021-05-17T17:05:04.3193976Z Preparing to unpack .../20-libx264-155_2%3a0.155.2917+git0a84d98-2_amd64.deb ... 2021-05-17T17:05:04.3205943Z Unpacking libx264-155:amd64 (2:0.155.2917+git0a84d98-2) ... 2021-05-17T17:05:04.4292280Z Selecting previously unselected package libx265-179:amd64. 2021-05-17T17:05:04.4555669Z Preparing to unpack .../21-libx265-179_3.2.1-1build1_amd64.deb ... 2021-05-17T17:05:04.4568026Z Unpacking libx265-179:amd64 (3.2.1-1build1) ... 2021-05-17T17:05:04.6874777Z Selecting previously unselected package libxvidcore4:amd64. 2021-05-17T17:05:04.7174217Z Preparing to unpack .../22-libxvidcore4_2%3a1.3.7-1_amd64.deb ... 2021-05-17T17:05:04.7187052Z Unpacking libxvidcore4:amd64 (2:1.3.7-1) ... 2021-05-17T17:05:04.7719414Z Selecting previously unselected package libzvbi-common. 2021-05-17T17:05:04.8012799Z Preparing to unpack .../23-libzvbi-common_0.2.35-17_all.deb ... 2021-05-17T17:05:04.8027486Z Unpacking libzvbi-common (0.2.35-17) ... 2021-05-17T17:05:04.8371766Z Selecting previously unselected package libzvbi0:amd64. 2021-05-17T17:05:04.8675256Z Preparing to unpack .../24-libzvbi0_0.2.35-17_amd64.deb ... 2021-05-17T17:05:04.8734042Z Unpacking libzvbi0:amd64 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Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T17:05:12.1112675Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-17T17:05:12.1147397Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T17:05:12.1202877Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-17T17:05:12.1243230Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-17T17:05:12.1280195Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T17:05:12.1314637Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-17T17:05:12.1358822Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:05:12.1403676Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-17T17:05:12.1442273Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-17T17:05:12.1481411Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T17:05:12.1513373Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-17T17:05:12.1560339Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-17T17:05:12.1586672Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-17T17:05:12.1617299Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-17T17:05:12.1649186Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-17T17:05:12.1679396Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-17T17:05:12.1705601Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-17T17:05:12.1731062Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-17T17:05:12.1781232Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:05:12.1822749Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-17T17:05:12.1975744Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-17T17:05:12.2003246Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-17T17:05:12.2029463Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-17T17:05:12.2064645Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2098503Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-17T17:05:12.2126520Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2162503Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-17T17:05:12.2206269Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-17T17:05:12.2244906Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-17T17:05:12.2278436Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-17T17:05:12.2317909Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-17T17:05:12.2355506Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2392400Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-17T17:05:12.2430946Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-17T17:05:12.2463501Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-17T17:05:12.2574998Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2606732Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2638431Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2673127Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-17T17:05:12.2701045Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-17T17:05:12.2734713Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2791474Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2819741Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2850762Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-17T17:05:12.2949731Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:05:13.5418646Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:05:16.0201760Z Reading package lists... 2021-05-17T17:05:16.2098401Z Building dependency tree... 2021-05-17T17:05:16.2120627Z Reading state information... 2021-05-17T17:05:16.3819661Z The following additional packages will be installed: 2021-05-17T17:05:16.3823376Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T17:05:16.4385977Z The following NEW packages will be installed: 2021-05-17T17:05:16.4388110Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T17:05:16.4393676Z libmagick++-dev 2021-05-17T17:05:16.4666886Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:16.4668110Z Need to get 309 kB of archives. 2021-05-17T17:05:16.4669610Z After this operation, 2202 kB of additional disk space will be used. 2021-05-17T17:05:16.4671960Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-17T17:05:16.4723094Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-17T17:05:16.4773984Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-17T17:05:16.4819289Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-17T17:05:16.9599188Z Fetched 309 kB in 0s (8195 kB/s) 2021-05-17T17:05:16.9956049Z Selecting previously unselected package libmagick++-6-headers. 2021-05-17T17:05:17.0039559Z (Reading database ... 2021-05-17T17:05:17.0040445Z (Reading database ... 5% 2021-05-17T17:05:17.0040996Z (Reading database ... 10% 2021-05-17T17:05:17.0041557Z (Reading database ... 15% 2021-05-17T17:05:17.0042103Z (Reading database ... 20% 2021-05-17T17:05:17.0042635Z (Reading database ... 25% 2021-05-17T17:05:17.0043186Z (Reading database ... 30% 2021-05-17T17:05:17.0043717Z (Reading database ... 35% 2021-05-17T17:05:17.0044260Z (Reading database ... 40% 2021-05-17T17:05:17.0044804Z (Reading database ... 45% 2021-05-17T17:05:17.0045332Z (Reading database ... 50% 2021-05-17T17:05:17.0080715Z (Reading database ... 55% 2021-05-17T17:05:17.0131980Z (Reading database ... 60% 2021-05-17T17:05:17.0166126Z (Reading database ... 65% 2021-05-17T17:05:17.0310040Z (Reading database ... 70% 2021-05-17T17:05:17.0449885Z (Reading database ... 75% 2021-05-17T17:05:17.0478024Z (Reading database ... 80% 2021-05-17T17:05:17.1077244Z (Reading database ... 85% 2021-05-17T17:05:17.1266524Z (Reading database ... 90% 2021-05-17T17:05:17.1356808Z (Reading database ... 95% 2021-05-17T17:05:17.1357484Z (Reading database ... 100% 2021-05-17T17:05:17.1358316Z (Reading database ... 267348 files and directories currently installed.) 2021-05-17T17:05:17.1487070Z Preparing to unpack .../libmagick++-6-headers_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-17T17:05:17.1577376Z Unpacking libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.2093797Z Selecting previously unselected package libmagick++-6.q16-8:amd64. 2021-05-17T17:05:17.2337847Z Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T17:05:17.2369081Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.2852320Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-17T17:05:17.3101599Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T17:05:17.3118380Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.3677001Z Selecting previously unselected package libmagick++-dev. 2021-05-17T17:05:17.3976208Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-17T17:05:17.4065768Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.4685605Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.4802432Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.4975807Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.5010912Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T17:05:17.5122559Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:05:19.9217938Z Reading package lists... 2021-05-17T17:05:20.0987870Z Building dependency tree... 2021-05-17T17:05:20.1009524Z Reading state information... 2021-05-17T17:05:20.2674957Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-17T17:05:20.2677550Z The following additional packages will be installed: 2021-05-17T17:05:20.2680053Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-17T17:05:20.2682010Z libijs-0.35 libjbig2dec0 2021-05-17T17:05:20.2684398Z Suggested packages: 2021-05-17T17:05:20.2687328Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-17T17:05:20.2689053Z ghostscript-x 2021-05-17T17:05:20.3319242Z The following NEW packages will be installed: 2021-05-17T17:05:20.3322160Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-17T17:05:20.3328273Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-17T17:05:20.3628122Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:20.3628967Z Need to get 11.2 MB of archives. 2021-05-17T17:05:20.3629774Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-17T17:05:20.3631823Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-17T17:05:20.4178889Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-17T17:05:20.4193046Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-17T17:05:20.5306612Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-17T17:05:20.5421534Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-17T17:05:20.5428491Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-17T17:05:20.5442908Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-17T17:05:20.5914397Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-17T17:05:21.0961256Z Fetched 11.2 MB in 0s (43.6 MB/s) 2021-05-17T17:05:21.1324086Z Selecting previously unselected package fonts-droid-fallback. 2021-05-17T17:05:21.1406454Z (Reading database ... 2021-05-17T17:05:21.1407109Z (Reading database ... 5% 2021-05-17T17:05:21.1407650Z (Reading 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... 100% 2021-05-17T17:05:21.2675995Z (Reading database ... 267393 files and directories currently installed.) 2021-05-17T17:05:21.2790939Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-17T17:05:21.3096595Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T17:05:21.5657107Z Selecting previously unselected package fonts-noto-mono. 2021-05-17T17:05:21.5888821Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-17T17:05:21.5904154Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T17:05:21.6373820Z Selecting previously unselected package fonts-urw-base35. 2021-05-17T17:05:21.6627354Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-17T17:05:21.7411901Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-17T17:05:22.1893217Z Selecting previously unselected package libgs9-common. 2021-05-17T17:05:22.2186268Z Preparing to unpack .../3-libgs9-common_9.50~dfsg-5ubuntu4.2_all.deb ... 2021-05-17T17:05:22.2244927Z Unpacking libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:05:22.3581507Z Selecting previously unselected package libijs-0.35:amd64. 2021-05-17T17:05:22.3866340Z Preparing to unpack .../4-libijs-0.35_0.35-15_amd64.deb ... 2021-05-17T17:05:22.3889411Z Unpacking libijs-0.35:amd64 (0.35-15) ... 2021-05-17T17:05:22.4172021Z Selecting previously unselected package libjbig2dec0:amd64. 2021-05-17T17:05:22.4495218Z Preparing to unpack .../5-libjbig2dec0_0.18-1ubuntu1_amd64.deb ... 2021-05-17T17:05:22.4509629Z Unpacking libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T17:05:22.4932310Z Selecting previously unselected package libgs9:amd64. 2021-05-17T17:05:22.5251718Z Preparing to unpack .../6-libgs9_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T17:05:22.5264282Z Unpacking libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:05:22.8653657Z Selecting previously unselected package ghostscript. 2021-05-17T17:05:22.8910207Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T17:05:22.8923098Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:05:22.9696824Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T17:05:22.9741696Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-17T17:05:22.9769158Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-17T17:05:23.0469780Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T17:05:23.0501240Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T17:05:23.0836946Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:05:23.0865869Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:05:23.0888962Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T17:05:23.1028977Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T17:05:23.2508765Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:05:23.2742839Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:05:26.9563948Z Reading package lists... 2021-05-17T17:05:27.1588122Z Building dependency tree... 2021-05-17T17:05:27.1616574Z Reading state information... 2021-05-17T17:05:27.3483351Z The following additional packages will be installed: 2021-05-17T17:05:27.3487650Z libudunits2-0 libudunits2-data 2021-05-17T17:05:27.4084096Z The following NEW packages will be installed: 2021-05-17T17:05:27.4091400Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-17T17:05:27.4355340Z 0 upgraded, 3 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:27.4356185Z Need to get 429 kB of archives. 2021-05-17T17:05:27.4356979Z After this operation, 1026 kB of additional disk space will be used. 2021-05-17T17:05:27.4359028Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-17T17:05:27.4385989Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-17T17:05:27.4410277Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-17T17:05:27.9357397Z Fetched 429 kB in 0s (11.0 MB/s) 2021-05-17T17:05:27.9725026Z Selecting previously unselected package libudunits2-data. 2021-05-17T17:05:27.9808706Z (Reading database ... 2021-05-17T17:05:27.9809626Z (Reading database ... 5% 2021-05-17T17:05:27.9811167Z (Reading database ... 10% 2021-05-17T17:05:27.9811915Z (Reading database ... 15% 2021-05-17T17:05:27.9812655Z (Reading database ... 20% 2021-05-17T17:05:27.9813391Z (Reading database ... 25% 2021-05-17T17:05:27.9814105Z (Reading database ... 30% 2021-05-17T17:05:27.9814838Z (Reading database ... 35% 2021-05-17T17:05:27.9816945Z (Reading database ... 40% 2021-05-17T17:05:27.9817904Z (Reading database ... 45% 2021-05-17T17:05:27.9818666Z (Reading database ... 50% 2021-05-17T17:05:27.9858968Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-17T17:05:28.2453825Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-17T17:05:28.2706896Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-17T17:05:28.2716953Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T17:05:28.3630631Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-17T17:05:28.3660968Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-17T17:05:28.3696561Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T17:05:28.3731201Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T17:05:28.5062686Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:05:30.8886911Z Reading package lists... 2021-05-17T17:05:31.0914872Z Building dependency tree... 2021-05-17T17:05:31.0939010Z Reading state information... 2021-05-17T17:05:31.3153770Z The following NEW packages will be installed: 2021-05-17T17:05:31.3159779Z libjq-dev 2021-05-17T17:05:31.4171761Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:31.4173547Z Need to get 11.2 kB of archives. 2021-05-17T17:05:31.4175281Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-17T17:05:31.4179052Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-17T17:05:31.9060183Z Fetched 11.2 kB in 0s (116 kB/s) 2021-05-17T17:05:31.9415507Z Selecting previously unselected package libjq-dev:amd64. 2021-05-17T17:05:31.9496028Z (Reading database ... 2021-05-17T17:05:31.9497066Z (Reading database ... 5% 2021-05-17T17:05:31.9497884Z (Reading database ... 10% 2021-05-17T17:05:31.9498686Z (Reading database ... 15% 2021-05-17T17:05:31.9499521Z (Reading database ... 20% 2021-05-17T17:05:31.9500306Z (Reading database ... 25% 2021-05-17T17:05:31.9501095Z (Reading database ... 30% 2021-05-17T17:05:31.9501897Z (Reading database ... 35% 2021-05-17T17:05:31.9502694Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-17T17:05:34.6175844Z Reading package lists... 2021-05-17T17:05:34.8103616Z Building dependency tree... 2021-05-17T17:05:34.8135028Z Reading state information... 2021-05-17T17:05:35.0443418Z The following NEW packages will be installed: 2021-05-17T17:05:35.0447817Z libmng2 2021-05-17T17:05:35.0692097Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:35.0692956Z Need to get 168 kB of archives. 2021-05-17T17:05:35.0693791Z After this operation, 571 kB of additional disk space will be used. 2021-05-17T17:05:35.0700514Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-17T17:05:35.5878065Z Fetched 168 kB in 0s (4334 kB/s) 2021-05-17T17:05:35.6389560Z Selecting previously unselected package libmng2:amd64. 2021-05-17T17:05:35.6475225Z (Reading database ... 2021-05-17T17:05:35.6477407Z (Reading database ... 5% 2021-05-17T17:05:35.6478233Z (Reading database ... 10% 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2021-05-17T17:05:35.7841297Z (Reading database ... 267992 files and directories currently installed.) 2021-05-17T17:05:35.7966713Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-17T17:05:35.7990384Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T17:05:35.8850577Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T17:05:35.8890790Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:05:38.3280692Z Reading package lists... 2021-05-17T17:05:38.5194946Z Building dependency tree... 2021-05-17T17:05:38.5219392Z Reading state information... 2021-05-17T17:05:38.7222599Z E: Unable to locate package libmng1 2021-05-17T17:05:38.7939069Z Reading package lists... 2021-05-17T17:05:38.9843190Z Building dependency tree... 2021-05-17T17:05:38.9864988Z Reading state information... 2021-05-17T17:05:39.1259161Z E: Unable to locate package libapparmor-devel 2021-05-17T17:05:39.2056506Z Reading package lists... 2021-05-17T17:05:39.4012340Z Building dependency tree... 2021-05-17T17:05:39.4032844Z Reading state information... 2021-05-17T17:05:39.5934216Z The following additional packages will be installed: 2021-05-17T17:05:39.5937140Z libij-java 2021-05-17T17:05:39.6453168Z The following NEW packages will be installed: 2021-05-17T17:05:39.6464665Z imagej libij-java 2021-05-17T17:05:39.6724118Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:39.6725435Z Need to get 2328 kB of archives. 2021-05-17T17:05:39.6726774Z After this operation, 2498 kB of additional disk space will be used. 2021-05-17T17:05:39.6731399Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-17T17:05:39.7308263Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-17T17:05:40.2389946Z Fetched 2328 kB in 0s (29.1 MB/s) 2021-05-17T17:05:40.2782541Z Selecting previously unselected package libij-java. 2021-05-17T17:05:40.2867922Z (Reading 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90% 2021-05-17T17:05:40.4342621Z (Reading database ... 95% 2021-05-17T17:05:40.4343450Z (Reading database ... 100% 2021-05-17T17:05:40.4344293Z (Reading database ... 267998 files and directories currently installed.) 2021-05-17T17:05:40.4486489Z Preparing to unpack .../libij-java_1.52r-1_all.deb ... 2021-05-17T17:05:40.4499314Z Unpacking libij-java (1.52r-1) ... 2021-05-17T17:05:40.5531757Z Selecting previously unselected package imagej. 2021-05-17T17:05:40.5803251Z Preparing to unpack .../imagej_1.52r-1_all.deb ... 2021-05-17T17:05:40.5821889Z Unpacking imagej (1.52r-1) ... 2021-05-17T17:05:40.6707014Z Setting up libij-java (1.52r-1) ... 2021-05-17T17:05:40.6753609Z Setting up imagej (1.52r-1) ... 2021-05-17T17:05:40.6787310Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-17T17:05:41.4662137Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:05:42.3112452Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-17T17:05:44.8131499Z Reading package lists... 2021-05-17T17:05:44.9988925Z Building dependency tree... 2021-05-17T17:05:45.0010862Z Reading state information... 2021-05-17T17:05:45.1826729Z Suggested packages: 2021-05-17T17:05:45.1828266Z bowtie2-examples 2021-05-17T17:05:45.2405326Z The following NEW packages will be installed: 2021-05-17T17:05:45.2406451Z bowtie2 2021-05-17T17:05:45.2662635Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:45.2663470Z Need to get 1324 kB of archives. 2021-05-17T17:05:45.2664280Z After this operation, 5630 kB of additional disk space will be used. 2021-05-17T17:05:45.2666266Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-17T17:05:45.7934312Z Fetched 1324 kB in 0s (19.1 MB/s) 2021-05-17T17:05:45.8294850Z Selecting previously unselected package bowtie2. 2021-05-17T17:05:45.8381147Z (Reading database ... 2021-05-17T17:05:45.8382039Z (Reading database ... 5% 2021-05-17T17:05:45.8382819Z (Reading database ... 10% 2021-05-17T17:05:45.8383563Z (Reading database ... 15% 2021-05-17T17:05:45.8384318Z (Reading database ... 20% 2021-05-17T17:05:45.8385045Z (Reading database ... 25% 2021-05-17T17:05:45.8385774Z (Reading database ... 30% 2021-05-17T17:05:45.8386495Z (Reading database ... 35% 2021-05-17T17:05:45.8387203Z (Reading database ... 40% 2021-05-17T17:05:45.8387922Z (Reading database ... 45% 2021-05-17T17:05:45.8388639Z (Reading database ... 50% 2021-05-17T17:05:45.8433043Z (Reading database ... 55% 2021-05-17T17:05:45.8500705Z (Reading database ... 60% 2021-05-17T17:05:45.8529189Z (Reading database ... 65% 2021-05-17T17:05:45.8689502Z (Reading database ... 70% 2021-05-17T17:05:45.8840781Z (Reading database ... 75% 2021-05-17T17:05:45.8869493Z (Reading database ... 80% 2021-05-17T17:05:45.9590545Z (Reading database ... 85% 2021-05-17T17:05:45.9804629Z (Reading database ... 90% 2021-05-17T17:05:45.9899088Z (Reading database ... 95% 2021-05-17T17:05:45.9900348Z (Reading database ... 100% 2021-05-17T17:05:45.9901216Z (Reading database ... 268021 files and directories currently installed.) 2021-05-17T17:05:46.0031506Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-17T17:05:46.0040963Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-17T17:05:46.2330923Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-17T17:05:46.2375138Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:05:49.6636363Z Reading package lists... 2021-05-17T17:05:49.8681968Z Building dependency tree... 2021-05-17T17:05:49.8704857Z Reading state information... 2021-05-17T17:05:50.1136404Z E: Unable to locate package install 2021-05-17T17:05:50.1137878Z E: Unable to locate package gdal 2021-05-17T17:05:50.1900586Z Reading package lists... 2021-05-17T17:05:50.3780572Z Building dependency tree... 2021-05-17T17:05:50.3802632Z Reading state information... 2021-05-17T17:05:50.4083686Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-17T17:05:50.4086033Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T17:05:50.4087492Z is only available from another source 2021-05-17T17:05:50.4088864Z 2021-05-17T17:05:50.5157812Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-17T17:05:50.5883861Z Reading package lists... 2021-05-17T17:05:50.7845536Z Building dependency tree... 2021-05-17T17:05:50.7866634Z Reading state information... 2021-05-17T17:05:50.8155739Z Package libav-tools is not available, but is referred to by another package. 2021-05-17T17:05:50.8157447Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T17:05:50.8158470Z is only available from another source 2021-05-17T17:05:50.8159395Z However the following packages replace it: 2021-05-17T17:05:50.8160168Z ffmpeg 2021-05-17T17:05:50.8160640Z 2021-05-17T17:05:50.9252072Z E: Package 'libav-tools' has no installation candidate 2021-05-17T17:05:51.0008883Z Reading package lists... 2021-05-17T17:05:51.2013280Z Building dependency tree... 2021-05-17T17:05:51.2035465Z Reading state information... 2021-05-17T17:05:51.3799883Z The following additional packages will be installed: 2021-05-17T17:05:51.3803638Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-17T17:05:51.3806980Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T17:05:51.3811738Z libssh2-1-dev 2021-05-17T17:05:51.3813124Z Suggested packages: 2021-05-17T17:05:51.3816859Z libgcrypt20-doc libmbedtls-doc 2021-05-17T17:05:51.4364483Z The following NEW packages will be installed: 2021-05-17T17:05:51.4368195Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-17T17:05:51.4370668Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T17:05:51.4374169Z libssh2-1-dev 2021-05-17T17:05:51.4734641Z 0 upgraded, 11 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:05:51.4735482Z Need to get 2667 kB of archives. 2021-05-17T17:05:51.4736301Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-17T17:05:51.4738286Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-17T17:05:51.4818492Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-17T17:05:51.5102139Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-17T17:05:51.5108660Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-17T17:05:51.5135207Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-17T17:05:51.5146274Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-17T17:05:51.5158025Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-17T17:05:51.5230626Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-17T17:05:51.5345326Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-17T17:05:51.5432297Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-17T17:05:51.5444576Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-17T17:05:52.0669358Z Fetched 2667 kB in 0s (23.0 MB/s) 2021-05-17T17:05:52.1044500Z Selecting previously unselected package libgpg-error-dev. 2021-05-17T17:05:52.1131443Z (Reading database ... 2021-05-17T17:05:52.1132048Z (Reading database ... 5% 2021-05-17T17:05:52.1132590Z (Reading database 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2021-05-17T17:05:52.2758196Z (Reading database ... 268047 files and directories currently installed.) 2021-05-17T17:05:52.2907644Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-17T17:05:52.2920780Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-17T17:05:52.3328594Z Selecting previously unselected package libgcrypt20-dev. 2021-05-17T17:05:52.3635211Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-17T17:05:52.3652422Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T17:05:52.4532248Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-17T17:05:52.4779319Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-17T17:05:52.4802441Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T17:05:52.5171653Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-17T17:05:52.5440707Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:05:52.5453518Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:52.5892512Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-17T17:05:52.6204569Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:05:52.6217756Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:52.6691794Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-17T17:05:52.6990623Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:05:52.7008705Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:52.7358526Z Selecting previously unselected package libgit2-28:amd64. 2021-05-17T17:05:52.7731028Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T17:05:52.7745811Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:05:52.8492804Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-17T17:05:52.8768129Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T17:05:52.8777016Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:52.9639728Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-17T17:05:52.9967337Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-17T17:05:52.9979204Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T17:05:53.0613958Z Selecting previously unselected package libhttp-parser-dev. 2021-05-17T17:05:53.0905174Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-17T17:05:53.0913577Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-17T17:05:53.1252318Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-17T17:05:53.1504830Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T17:05:53.1513159Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:05:53.2969209Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-17T17:05:53.3002298Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:53.3126322Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T17:05:53.3165063Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-17T17:05:53.3197887Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:53.3232488Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:53.3266122Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T17:05:53.3296583Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T17:05:53.3329211Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T17:05:53.3355810Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:05:53.3387957Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T17:05:53.3424275Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:05:59.2994287Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T17:05:59.4463357Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:06:01.8778796Z Reading package lists... 2021-05-17T17:06:02.0732049Z Building dependency tree... 2021-05-17T17:06:02.0754590Z Reading state information... 2021-05-17T17:06:02.3550485Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-17T17:06:02.3552047Z libtiff-dev set to manually installed. 2021-05-17T17:06:02.3553146Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:02.4322678Z Reading package lists... 2021-05-17T17:06:02.6318141Z Building dependency tree... 2021-05-17T17:06:02.6340463Z Reading state information... 2021-05-17T17:06:02.8961319Z unixodbc-dev is already the newest version (2.3.7). 2021-05-17T17:06:02.8963862Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:02.9704788Z Reading package lists... 2021-05-17T17:06:03.1801294Z Building dependency tree... 2021-05-17T17:06:03.1824089Z Reading state information... 2021-05-17T17:06:03.4082382Z The following NEW packages will be installed: 2021-05-17T17:06:03.4086206Z libsodium-dev 2021-05-17T17:06:03.4339703Z 0 upgraded, 1 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:03.4342105Z Need to get 169 kB of archives. 2021-05-17T17:06:03.4346299Z After this operation, 826 kB of additional disk space will be used. 2021-05-17T17:06:03.4349994Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-17T17:06:03.9519190Z Fetched 169 kB in 0s (5993 kB/s) 2021-05-17T17:06:03.9889852Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-17T17:06:04.0012469Z (Reading database ... 2021-05-17T17:06:04.0013998Z (Reading database ... 5% 2021-05-17T17:06:04.0014885Z (Reading database ... 10% 2021-05-17T17:06:04.0015617Z (Reading database ... 15% 2021-05-17T17:06:04.0016350Z (Reading database ... 20% 2021-05-17T17:06:04.0017357Z (Reading database ... 25% 2021-05-17T17:06:04.0018202Z (Reading database ... 30% 2021-05-17T17:06:04.0018932Z (Reading database ... 35% 2021-05-17T17:06:04.0019645Z (Reading database ... 40% 2021-05-17T17:06:04.0020371Z (Reading database ... 45% 2021-05-17T17:06:04.0021093Z (Reading database ... 50% 2021-05-17T17:06:04.0070078Z (Reading database ... 55% 2021-05-17T17:06:04.0131523Z (Reading database ... 60% 2021-05-17T17:06:04.0165942Z (Reading database ... 65% 2021-05-17T17:06:04.0377524Z (Reading database ... 70% 2021-05-17T17:06:04.0579477Z (Reading database ... 75% 2021-05-17T17:06:04.0619451Z (Reading database ... 80% 2021-05-17T17:06:04.1305094Z (Reading database ... 85% 2021-05-17T17:06:04.1510082Z (Reading database ... 90% 2021-05-17T17:06:04.1606288Z (Reading database ... 95% 2021-05-17T17:06:04.1606894Z (Reading database ... 100% 2021-05-17T17:06:04.1607728Z (Reading database ... 268550 files and directories currently installed.) 2021-05-17T17:06:04.1736120Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-17T17:06:04.1746605Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T17:06:04.2671553Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T17:06:06.7633126Z Reading package lists... 2021-05-17T17:06:06.9950399Z Building dependency tree... 2021-05-17T17:06:06.9971344Z Reading state information... 2021-05-17T17:06:07.1836799Z The following additional packages will be installed: 2021-05-17T17:06:07.1842817Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-17T17:06:07.2365277Z The following NEW packages will be installed: 2021-05-17T17:06:07.2375647Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-17T17:06:07.2377358Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-17T17:06:07.2773489Z 0 upgraded, 8 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:07.2774688Z Need to get 10.4 MB of archives. 2021-05-17T17:06:07.2776028Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-17T17:06:07.2778113Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-17T17:06:07.2960737Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-17T17:06:07.3203542Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-17T17:06:07.3458067Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-17T17:06:07.3690518Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-17T17:06:07.3995244Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-17T17:06:07.4214921Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-17T17:06:07.4720578Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-17T17:06:08.0056465Z Fetched 10.4 MB in 0s (45.0 MB/s) 2021-05-17T17:06:08.0422939Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-17T17:06:08.0507416Z (Reading database ... 2021-05-17T17:06:08.0508398Z (Reading database ... 5% 2021-05-17T17:06:08.0509164Z (Reading database ... 10% 2021-05-17T17:06:08.0509924Z (Reading database ... 15% 2021-05-17T17:06:08.0511531Z (Reading database ... 20% 2021-05-17T17:06:08.0512290Z (Reading database ... 25% 2021-05-17T17:06:08.0513032Z (Reading database ... 30% 2021-05-17T17:06:08.0513741Z (Reading database ... 35% 2021-05-17T17:06:08.0514901Z (Reading database ... 40% 2021-05-17T17:06:08.0516006Z (Reading database ... 45% 2021-05-17T17:06:08.0517617Z (Reading database ... 50% 2021-05-17T17:06:08.0547583Z (Reading database ... 55% 2021-05-17T17:06:08.0606567Z (Reading database ... 60% 2021-05-17T17:06:08.0636643Z (Reading database ... 65% 2021-05-17T17:06:08.0818794Z (Reading database ... 70% 2021-05-17T17:06:08.0979453Z (Reading database ... 75% 2021-05-17T17:06:08.1009705Z (Reading database ... 80% 2021-05-17T17:06:08.1702906Z (Reading database ... 85% 2021-05-17T17:06:08.1937173Z (Reading database ... 90% 2021-05-17T17:06:08.2034294Z (Reading database ... 95% 2021-05-17T17:06:08.2034904Z (Reading database ... 100% 2021-05-17T17:06:08.2035750Z (Reading database ... 268620 files and directories currently installed.) 2021-05-17T17:06:08.2181945Z Preparing to unpack .../0-libarchive-dev_3.4.0-2ubuntu1_amd64.deb ... 2021-05-17T17:06:08.2196507Z Unpacking libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-17T17:06:08.3132219Z Selecting previously unselected package liblept5:amd64. 2021-05-17T17:06:08.3429001Z Preparing to unpack .../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-17T17:06:08.3456370Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-17T17:06:08.4812541Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-17T17:06:08.5065560Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-17T17:06:08.5078363Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T17:06:08.7013086Z Selecting previously unselected package libtesseract4:amd64. 2021-05-17T17:06:08.7334985Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-17T17:06:08.7348975Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T17:06:08.9093336Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-17T17:06:08.9386268Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-17T17:06:08.9397158Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T17:06:09.1414025Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-17T17:06:09.1713339Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T17:06:09.1720560Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:06:09.3652817Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-17T17:06:09.3934749Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T17:06:09.3945674Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:06:09.7892869Z Selecting previously unselected package tesseract-ocr. 2021-05-17T17:06:09.8155735Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-17T17:06:09.8168489Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-17T17:06:09.9285861Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:06:09.9319864Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-17T17:06:09.9356870Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T17:06:09.9388580Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T17:06:09.9427785Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-17T17:06:09.9482332Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T17:06:09.9515292Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T17:06:09.9545918Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-17T17:06:09.9587559Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:06:13.4642381Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:06:15.9170362Z Reading package lists... 2021-05-17T17:06:16.1214245Z Building dependency tree... 2021-05-17T17:06:16.1236178Z Reading state information... 2021-05-17T17:06:16.4117381Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-17T17:06:16.4118988Z 0 upgraded, 0 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:16.4859432Z Reading package lists... 2021-05-17T17:06:16.6840096Z Building dependency tree... 2021-05-17T17:06:16.6860606Z Reading state information... 2021-05-17T17:06:16.8679070Z The following additional packages will be installed: 2021-05-17T17:06:16.8681867Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T17:06:16.8684002Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-17T17:06:16.8687212Z Suggested packages: 2021-05-17T17:06:16.8688650Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-17T17:06:16.9260797Z The following NEW packages will be installed: 2021-05-17T17:06:16.9265296Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T17:06:16.9272442Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-17T17:06:16.9646712Z 0 upgraded, 10 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:16.9648194Z Need to get 1459 kB of archives. 2021-05-17T17:06:16.9649260Z After this operation, 7754 kB of additional disk space will be used. 2021-05-17T17:06:16.9651675Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-17T17:06:16.9697107Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-17T17:06:16.9710342Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-17T17:06:16.9746085Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-17T17:06:16.9822307Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-17T17:06:16.9840753Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-17T17:06:16.9903601Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-17T17:06:17.0077074Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-17T17:06:17.0144568Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-17T17:06:17.0149731Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-17T17:06:17.5145767Z Fetched 1459 kB in 0s (17.5 MB/s) 2021-05-17T17:06:17.5533097Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-17T17:06:17.5659370Z (Reading database ... 2021-05-17T17:06:17.5660457Z (Reading database ... 5% 2021-05-17T17:06:17.5661225Z (Reading database ... 10% 2021-05-17T17:06:17.5661959Z (Reading database ... 15% 2021-05-17T17:06:17.5662763Z (Reading database ... 20% 2021-05-17T17:06:17.5663667Z (Reading database ... 25% 2021-05-17T17:06:17.5664404Z (Reading database ... 30% 2021-05-17T17:06:17.5665140Z (Reading database ... 35% 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2021-05-17T17:06:17.7706550Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-17T17:06:17.8024981Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:06:17.8041339Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:17.8356573Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-17T17:06:17.8777727Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:06:17.8794985Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:17.9211050Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-17T17:06:17.9458048Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:06:17.9472526Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:17.9854832Z Selecting previously unselected package comerr-dev:amd64. 2021-05-17T17:06:18.0107036Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-17T17:06:18.0150208Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T17:06:18.0532211Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-17T17:06:18.0792393Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:06:18.0806262Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.1252910Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-17T17:06:18.1521962Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-17T17:06:18.1538358Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T17:06:18.2360468Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-17T17:06:18.2680693Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T17:06:18.2695147Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T17:06:18.3253119Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-17T17:06:18.3525589Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T17:06:18.3540539Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.3932603Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-17T17:06:18.4183929Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-17T17:06:18.4220414Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T17:06:18.5488045Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T17:06:18.5523096Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.5560088Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T17:06:18.5609534Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T17:06:18.5660938Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.5699125Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.5730243Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.5754878Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.5782067Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T17:06:18.5812185Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T17:06:18.5846599Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:06:18.6093738Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:06:22.5384239Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T17:06:25.1279120Z Reading package lists... 2021-05-17T17:06:25.3176992Z Building dependency tree... 2021-05-17T17:06:25.3199137Z Reading state information... 2021-05-17T17:06:25.5010347Z E: Unable to locate package udunits 2021-05-17T17:06:25.5776964Z Reading package lists... 2021-05-17T17:06:25.7653682Z Building dependency tree... 2021-05-17T17:06:25.7674729Z Reading state information... 2021-05-17T17:06:25.9453631Z The following additional packages will be installed: 2021-05-17T17:06:25.9454954Z libwebpdemux2 2021-05-17T17:06:25.9967909Z The following NEW packages will be installed: 2021-05-17T17:06:25.9971164Z libwebp-dev libwebpdemux2 2021-05-17T17:06:26.0313421Z 0 upgraded, 2 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:26.0314272Z Need to get 277 kB of archives. 2021-05-17T17:06:26.0315074Z After this operation, 965 kB of additional disk space will be used. 2021-05-17T17:06:26.0317022Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-17T17:06:26.0385045Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-17T17:06:26.5392480Z Fetched 277 kB in 0s (5803 kB/s) 2021-05-17T17:06:26.5779226Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-17T17:06:26.5865893Z (Reading database ... 2021-05-17T17:06:26.5866790Z (Reading database ... 5% 2021-05-17T17:06:26.5867887Z (Reading 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... 100% 2021-05-17T17:06:26.7303529Z (Reading database ... 269145 files and directories currently installed.) 2021-05-17T17:06:26.7452987Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-17T17:06:26.7489291Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T17:06:26.7830819Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-17T17:06:26.8136894Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-17T17:06:26.8152777Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T17:06:26.9161225Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T17:06:26.9199314Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T17:06:26.9233465Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:06:29.3660063Z Reading package lists... 2021-05-17T17:06:29.5541956Z Building dependency tree... 2021-05-17T17:06:29.5566718Z Reading state information... 2021-05-17T17:06:29.7257105Z The following additional packages will be installed: 2021-05-17T17:06:29.7259378Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T17:06:29.7261152Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T17:06:29.7262635Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T17:06:29.7268536Z Suggested packages: 2021-05-17T17:06:29.7269831Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-17T17:06:29.7270657Z Recommended packages: 2021-05-17T17:06:29.7271274Z cargo 2021-05-17T17:06:29.7877302Z The following NEW packages will be installed: 2021-05-17T17:06:29.7884227Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T17:06:29.7886135Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T17:06:29.7888216Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T17:06:29.8326023Z 0 upgraded, 13 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:29.8327272Z Need to get 108 MB of archives. 2021-05-17T17:06:29.8328311Z After this operation, 501 MB of additional disk space will be used. 2021-05-17T17:06:29.8330959Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-17T17:06:29.8428536Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-17T17:06:29.8439331Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-17T17:06:29.8452096Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-17T17:06:29.8611139Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-17T17:06:29.8652394Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-17T17:06:29.8660389Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-17T17:06:29.9657632Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-17T17:06:30.8575349Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-17T17:06:31.3471406Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-17T17:06:31.3779256Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-17T17:06:31.4327612Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-17T17:06:31.6607677Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-17T17:06:32.1619608Z Fetched 108 MB in 2s (57.8 MB/s) 2021-05-17T17:06:32.1997581Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-17T17:06:32.2084352Z (Reading database ... 2021-05-17T17:06:32.2085434Z (Reading database ... 5% 2021-05-17T17:06:32.2086198Z (Reading database ... 10% 2021-05-17T17:06:32.2086961Z (Reading database ... 15% 2021-05-17T17:06:32.2087707Z (Reading database ... 20% 2021-05-17T17:06:32.2088432Z (Reading database ... 25% 2021-05-17T17:06:32.2089163Z (Reading database ... 30% 2021-05-17T17:06:32.2089901Z (Reading database ... 35% 2021-05-17T17:06:32.2091110Z (Reading database ... 40% 2021-05-17T17:06:32.2091658Z (Reading database ... 45% 2021-05-17T17:06:32.2092189Z (Reading database ... 50% 2021-05-17T17:06:32.2132246Z (Reading database ... 55% 2021-05-17T17:06:32.2181432Z (Reading database ... 60% 2021-05-17T17:06:32.2218275Z (Reading database ... 65% 2021-05-17T17:06:32.2371079Z (Reading database ... 70% 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.../02-libsource-highlight-common_3.1.8-1.2build5_all.deb ... 2021-05-17T17:06:32.5468270Z Unpacking libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T17:06:32.5961384Z Selecting previously unselected package libboost-regex1.71.0:amd64. 2021-05-17T17:06:32.6284067Z Preparing to unpack .../03-libboost-regex1.71.0_1.71.0-6ubuntu6_amd64.deb ... 2021-05-17T17:06:32.6302140Z Unpacking libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T17:06:32.7202286Z Selecting previously unselected package libsource-highlight4v5. 2021-05-17T17:06:32.7505700Z Preparing to unpack .../04-libsource-highlight4v5_3.1.8-1.2build5_amd64.deb ... 2021-05-17T17:06:32.7520207Z Unpacking libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T17:06:32.8098824Z Selecting previously unselected package libxxhash0:amd64. 2021-05-17T17:06:32.8421348Z Preparing to unpack .../05-libxxhash0_0.7.3-1_amd64.deb ... 2021-05-17T17:06:32.8437955Z Unpacking libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T17:06:32.8733738Z Selecting previously unselected package gdb. 2021-05-17T17:06:32.9048196Z Preparing to unpack .../06-gdb_10.2-0ubuntu1~20.04~1_amd64.deb ... 2021-05-17T17:06:32.9058686Z Unpacking gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T17:06:33.2851402Z Selecting previously unselected package libstd-rust-1.47:amd64. 2021-05-17T17:06:33.3171039Z Preparing to unpack .../07-libstd-rust-1.47_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:06:33.3184715Z Unpacking libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:40.0578603Z Selecting previously unselected package libstd-rust-dev:amd64. 2021-05-17T17:06:40.0883279Z Preparing to unpack .../08-libstd-rust-dev_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:06:40.0896691Z Unpacking libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:43.5080025Z Selecting previously unselected package rustc. 2021-05-17T17:06:43.5399760Z Preparing to unpack .../09-rustc_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:06:43.5410894Z Unpacking rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:43.7688020Z Selecting previously unselected package cargo. 2021-05-17T17:06:43.7992999Z Preparing to unpack .../10-cargo_0.47.0-1~exp1ubuntu1~20.04.1_amd64.deb ... 2021-05-17T17:06:43.8002730Z Unpacking cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T17:06:44.2057113Z Selecting previously unselected package libc6-dbg:amd64. 2021-05-17T17:06:44.2389907Z Preparing to unpack .../11-libc6-dbg_2.31-0ubuntu9.2_amd64.deb ... 2021-05-17T17:06:44.2401878Z Unpacking libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T17:06:45.6312266Z Selecting previously unselected package rust-gdb. 2021-05-17T17:06:45.6623635Z Preparing to unpack .../12-rust-gdb_1.47.0+dfsg1+llvm-1ubuntu1~20.04.1_all.deb ... 2021-05-17T17:06:45.6639004Z Unpacking rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:45.7357729Z Setting up libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:45.7412218Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T17:06:45.7438842Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T17:06:45.7468859Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:45.7490315Z Setting up libipt2 (2.0.1-1) ... 2021-05-17T17:06:45.7521526Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T17:06:45.7551654Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-17T17:06:45.7586021Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:45.7614566Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T17:06:45.7651889Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T17:06:45.7695261Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T17:06:45.7732694Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T17:06:45.7775104Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T17:06:45.7818837Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:06:45.8177920Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:06:49.7432483Z Reading package lists... 2021-05-17T17:06:49.9359755Z Building dependency tree... 2021-05-17T17:06:49.9381848Z Reading state information... 2021-05-17T17:06:50.1387804Z The following additional packages will be installed: 2021-05-17T17:06:50.1398670Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T17:06:50.1400162Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T17:06:50.1401644Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T17:06:50.1404257Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T17:06:50.1408642Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T17:06:50.1410933Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T17:06:50.1412719Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T17:06:50.1414707Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T17:06:50.1416769Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T17:06:50.1419101Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T17:06:50.1421099Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T17:06:50.1423097Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T17:06:50.1425223Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T17:06:50.1427545Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T17:06:50.1429767Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T17:06:50.1431876Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T17:06:50.1433882Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T17:06:50.1435918Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T17:06:50.1438605Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T17:06:50.1440513Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T17:06:50.1442156Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T17:06:50.1443884Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T17:06:50.1445520Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T17:06:50.1447073Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T17:06:50.1448629Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T17:06:50.1450768Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T17:06:50.1452702Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T17:06:50.1454827Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T17:06:50.1456819Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T17:06:50.1459777Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T17:06:50.1461556Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T17:06:50.1463269Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T17:06:50.1465579Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T17:06:50.1467522Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T17:06:50.1470271Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T17:06:50.1472400Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T17:06:50.1474333Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T17:06:50.1476191Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T17:06:50.1477976Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T17:06:50.1480712Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T17:06:50.1482753Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T17:06:50.1484551Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-17T17:06:50.1486362Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T17:06:50.1488472Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T17:06:50.1491037Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T17:06:50.1493443Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T17:06:50.1497576Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T17:06:50.1499791Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T17:06:50.1501550Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T17:06:50.1502308Z Suggested packages: 2021-05-17T17:06:50.1503410Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-17T17:06:50.1504772Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-17T17:06:50.1506467Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-17T17:06:50.1507991Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-17T17:06:50.1509273Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-17T17:06:50.1510657Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-17T17:06:50.1512722Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-17T17:06:50.1514261Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-17T17:06:50.1515658Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-17T17:06:50.1517099Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-17T17:06:50.1518637Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-17T17:06:50.1520226Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-17T17:06:50.1521880Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-17T17:06:50.1522960Z wpagui libengine-pkcs11-openssl 2021-05-17T17:06:50.2415446Z The following NEW packages will be installed: 2021-05-17T17:06:50.2417905Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T17:06:50.2423071Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T17:06:50.2424738Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T17:06:50.2426153Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T17:06:50.2427602Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T17:06:50.2429013Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T17:06:50.2430306Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T17:06:50.2431784Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T17:06:50.2433281Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T17:06:50.2434696Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T17:06:50.2436150Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T17:06:50.2437633Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T17:06:50.2439170Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T17:06:50.2440870Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T17:06:50.2442501Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T17:06:50.2444048Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T17:06:50.2445532Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T17:06:50.2447048Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T17:06:50.2448607Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T17:06:50.2449872Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T17:06:50.2451331Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T17:06:50.2452629Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T17:06:50.2453864Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T17:06:50.2455043Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T17:06:50.2456229Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T17:06:50.2457690Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T17:06:50.2459465Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T17:06:50.2461111Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T17:06:50.2463050Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T17:06:50.2464649Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T17:06:50.2466137Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T17:06:50.2467573Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T17:06:50.2470128Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T17:06:50.2471918Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T17:06:50.2473623Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T17:06:50.2475330Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T17:06:50.2476946Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T17:06:50.2478499Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T17:06:50.2480274Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T17:06:50.2483615Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T17:06:50.2485105Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T17:06:50.2486507Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-17T17:06:50.2487919Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T17:06:50.2489530Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T17:06:50.2491517Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T17:06:50.2493022Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T17:06:50.2494444Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T17:06:50.2496011Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T17:06:50.2497328Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T17:06:50.2736780Z 0 upgraded, 214 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:06:50.2738041Z Need to get 183 MB of archives. 2021-05-17T17:06:50.2740117Z After this operation, 776 MB of additional disk space will be used. 2021-05-17T17:06:50.2742343Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-17T17:06:50.2806155Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-17T17:06:50.3353016Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-17T17:06:50.3365793Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-17T17:06:50.3480668Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-17T17:06:50.3487189Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-17T17:06:50.3493651Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-17T17:06:50.3516175Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-17T17:06:50.3519066Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-17T17:06:50.3521823Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-17T17:06:50.3532673Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-17T17:06:50.3553266Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-17T17:06:50.3620606Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-17T17:06:50.3625431Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-17T17:06:50.3628261Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-17T17:06:50.3631753Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-17T17:06:50.3647265Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-17T17:06:50.3649460Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-17T17:06:50.3656938Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-17T17:06:50.3661898Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-17T17:06:50.3665467Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-17T17:06:50.3667647Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-17T17:06:50.3670724Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-17T17:06:50.4132704Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-17T17:06:50.4554357Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-17T17:06:50.4570718Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-17T17:06:50.4587683Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-17T17:06:50.4660164Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-17T17:06:50.4668628Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-17T17:06:50.4689390Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-17T17:06:50.4711609Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-17T17:06:50.4932614Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-17T17:06:50.5138068Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-17T17:06:50.5153330Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-17T17:06:50.5163428Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-17T17:06:50.5170802Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-17T17:06:50.7079931Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-17T17:06:50.7086891Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-17T17:06:50.7220749Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-17T17:06:50.7279428Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-17T17:06:50.7305615Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-17T17:06:50.7334200Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-17T17:06:50.7342984Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-17T17:06:50.7386079Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-17T17:06:50.7401548Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-17T17:06:50.7422209Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-17T17:06:50.7440064Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-17T17:06:50.7514974Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-17T17:06:50.7526346Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-17T17:06:50.7598010Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-17T17:06:50.7614416Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-17T17:06:50.7625804Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-17T17:06:50.7636207Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-17T17:06:50.7652512Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-17T17:06:50.7734920Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-17T17:06:50.7744977Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-17T17:06:50.8783793Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-17T17:06:50.8891721Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-17T17:06:50.8901219Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-17T17:06:50.8941570Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-17T17:06:50.8948638Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-17T17:06:50.8955217Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-17T17:06:50.8963501Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-17T17:06:50.8982080Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-17T17:06:50.8996344Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-17T17:06:50.9051575Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-17T17:06:50.9083067Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-17T17:06:50.9103393Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-17T17:06:50.9313179Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-17T17:06:50.9441120Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-17T17:06:51.0387311Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-17T17:06:51.0395068Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-17T17:06:51.0416320Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-17T17:06:51.0425465Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-17T17:06:51.0452368Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-17T17:06:51.0484588Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-17T17:06:51.0507890Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-17T17:06:51.1315651Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-17T17:06:51.1419901Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-17T17:06:51.1430061Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-17T17:06:51.1671537Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-17T17:06:51.1674817Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-17T17:06:51.1677461Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-17T17:06:51.1713522Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-17T17:06:51.2253778Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-17T17:06:51.2567671Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-17T17:06:51.2580286Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-17T17:06:51.2588187Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-17T17:06:51.2602095Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-17T17:06:51.2807294Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-17T17:06:51.2809797Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-17T17:06:51.2825057Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-17T17:06:51.2843652Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-17T17:06:51.2870646Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-17T17:06:51.2890341Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-17T17:06:51.2904561Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-17T17:06:51.3305738Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-17T17:06:51.3381342Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-17T17:06:51.3437165Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-17T17:06:51.3439409Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-17T17:06:51.3456388Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-17T17:06:51.3513480Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-17T17:06:51.3658531Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-17T17:06:51.3683688Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-17T17:06:51.3696656Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-17T17:06:51.3845896Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-17T17:06:51.3850512Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-17T17:06:51.9673484Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-17T17:06:51.9691099Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-17T17:06:51.9703856Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-17T17:06:51.9990568Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-17T17:06:52.0918314Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-17T17:06:52.0924532Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-17T17:06:52.0937757Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-17T17:06:52.1033020Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-17T17:06:52.1041681Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-17T17:06:52.1476370Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-17T17:06:52.1591736Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-17T17:06:52.1609197Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-17T17:06:52.1617370Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-17T17:06:52.1624069Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-17T17:06:52.1658587Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-17T17:06:52.1689459Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-17T17:06:52.1721757Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-17T17:06:52.1728145Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-17T17:06:52.1791386Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-17T17:06:52.1800713Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-17T17:06:52.1802623Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-17T17:06:52.1811972Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-17T17:06:52.1818167Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-17T17:06:52.1820928Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-17T17:06:52.1830404Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-17T17:06:52.1846475Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-17T17:06:52.1985155Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-17T17:06:52.2002388Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-17T17:06:52.2006609Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-17T17:06:52.2038002Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-17T17:06:52.2134270Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-17T17:06:52.2154553Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-17T17:06:52.2173656Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-17T17:06:52.2176779Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-17T17:06:52.2202924Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-17T17:06:52.2212120Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-17T17:06:52.2234059Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-17T17:06:52.2265231Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-17T17:06:52.2267604Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-17T17:06:52.2269863Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-17T17:06:52.2299705Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-17T17:06:52.2429033Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-17T17:06:52.2892952Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-17T17:06:52.2895157Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-17T17:06:52.3017560Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-17T17:06:52.3038191Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-17T17:06:52.3047616Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-17T17:06:52.3102772Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-17T17:06:52.3109167Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-17T17:06:52.3566108Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-17T17:06:52.3671127Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-17T17:06:52.3820535Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-17T17:06:52.4286931Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-17T17:06:52.4334024Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-17T17:06:52.4364319Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-17T17:06:52.4374972Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-17T17:06:52.4448470Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-17T17:06:52.4454500Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-17T17:06:52.4479347Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-17T17:06:52.4488407Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-17T17:06:52.4589518Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-17T17:06:52.4640601Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-17T17:06:52.5164642Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-17T17:06:52.5167023Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-17T17:06:52.5179786Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-17T17:06:52.5181981Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-17T17:06:52.5197370Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-17T17:06:52.5199513Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-17T17:06:52.5271163Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-17T17:06:52.5273169Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-17T17:06:52.5287137Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-17T17:06:52.5294656Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-17T17:06:52.5303183Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-17T17:06:52.5317426Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-17T17:06:52.5329874Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-17T17:06:52.5542962Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-17T17:06:52.5550841Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-17T17:06:52.6257554Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-17T17:06:52.6299056Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-17T17:06:52.6311491Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-17T17:06:52.6380379Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-17T17:06:52.6386649Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-17T17:06:52.6428651Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-17T17:06:52.6537937Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-17T17:06:52.6547884Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-17T17:06:52.6761830Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-17T17:06:52.6786370Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-17T17:06:52.6799969Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-17T17:06:52.7167204Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-17T17:06:52.7211881Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-17T17:06:52.7235271Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-17T17:06:52.7254156Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-17T17:06:52.7298487Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-17T17:06:52.7620619Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-17T17:06:52.8812363Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-17T17:06:52.8868722Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-17T17:06:52.9014710Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-17T17:06:53.1469016Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-17T17:06:53.2176514Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-17T17:06:53.2237861Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-17T17:06:53.2260032Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-17T17:06:53.2343393Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-17T17:06:53.2374041Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-17T17:06:53.2582553Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-17T17:06:53.2759123Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-17T17:06:53.2779137Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-17T17:06:53.2791331Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-17T17:06:54.5623747Z Fetched 183 MB in 3s (60.4 MB/s) 2021-05-17T17:06:54.6076859Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-17T17:06:54.6178240Z (Reading database ... 2021-05-17T17:06:54.6178930Z (Reading database ... 5% 2021-05-17T17:06:54.6179464Z (Reading database ... 10% 2021-05-17T17:06:54.6180004Z (Reading database ... 15% 2021-05-17T17:06:54.6180526Z (Reading database ... 20% 2021-05-17T17:06:54.6181066Z (Reading database ... 25% 2021-05-17T17:06:54.6181598Z (Reading database ... 30% 2021-05-17T17:06:54.6182640Z (Reading database ... 35% 2021-05-17T17:06:54.6183181Z (Reading database ... 40% 2021-05-17T17:06:54.6183714Z (Reading database ... 45% 2021-05-17T17:06:54.6184231Z (Reading database ... 50% 2021-05-17T17:06:54.6224089Z (Reading database ... 55% 2021-05-17T17:06:54.6279670Z (Reading database ... 60% 2021-05-17T17:06:54.6322078Z (Reading database ... 65% 2021-05-17T17:06:54.6473933Z (Reading database ... 70% 2021-05-17T17:06:54.6639370Z (Reading database ... 75% 2021-05-17T17:06:54.6666388Z (Reading database ... 80% 2021-05-17T17:06:54.7181814Z (Reading database ... 85% 2021-05-17T17:06:54.7605664Z (Reading database ... 90% 2021-05-17T17:06:54.7709293Z (Reading database ... 95% 2021-05-17T17:06:54.7710681Z (Reading database ... 100% 2021-05-17T17:06:54.7712038Z (Reading database ... 269928 files and directories currently installed.) 2021-05-17T17:06:54.7858380Z Preparing to unpack .../000-libdouble-conversion3_3.1.5-4ubuntu1_amd64.deb ... 2021-05-17T17:06:54.7881360Z Unpacking libdouble-conversion3:amd64 (3.1.5-4ubuntu1) ... 2021-05-17T17:06:54.8322057Z Selecting previously unselected package libqt5core5a:amd64. 2021-05-17T17:06:54.8630759Z Preparing to unpack .../001-libqt5core5a_5.12.8+dfsg-0ubuntu1_amd64.deb ... 2021-05-17T17:06:54.8720459Z Unpacking libqt5core5a:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:06:55.0932238Z Selecting previously unselected package libegl-mesa0:amd64. 2021-05-17T17:06:55.1239128Z Preparing to unpack .../002-libegl-mesa0_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:06:55.1249591Z Unpacking libegl-mesa0:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T17:06:55.1664825Z Selecting previously unselected package libegl1:amd64. 2021-05-17T17:06:55.1953866Z Preparing to unpack .../003-libegl1_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T17:06:55.1966033Z Unpacking libegl1:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T17:06:55.2276468Z Selecting previously unselected package libevdev2:amd64. 2021-05-17T17:06:55.2605018Z Preparing to unpack .../004-libevdev2_1.9.0+dfsg-1ubuntu0.1_amd64.deb ... 2021-05-17T17:06:55.2620338Z Unpacking libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-05-17T17:06:55.2947439Z Selecting previously unselected package libmtdev1:amd64. 2021-05-17T17:06:55.3369699Z Preparing to unpack .../005-libmtdev1_1.1.5-1.1_amd64.deb ... 2021-05-17T17:06:55.3381902Z Unpacking libmtdev1:amd64 (1.1.5-1.1) ... 2021-05-17T17:06:55.3749522Z Selecting previously unselected package libwacom-common. 2021-05-17T17:06:55.4023275Z Preparing to unpack .../006-libwacom-common_1.3-2ubuntu3_all.deb ... 2021-05-17T17:06:55.4034228Z Unpacking libwacom-common (1.3-2ubuntu3) ... 2021-05-17T17:06:55.5092010Z Selecting previously unselected package libwacom2:amd64. 2021-05-17T17:06:55.5388555Z Preparing to unpack .../007-libwacom2_1.3-2ubuntu3_amd64.deb ... 2021-05-17T17:06:55.5402133Z Unpacking libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-17T17:06:55.5681501Z Selecting previously unselected package libinput-bin. 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2021-05-17T17:07:36.2782168Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-17T17:07:36.7179488Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-17T17:07:36.7205206Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:36.7233356Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-17T17:07:36.9184525Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-17T17:07:36.9225997Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-17T17:07:37.1259909Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:37.1300325Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-17T17:07:37.3596924Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-17T17:07:37.3646510Z Setting up gcr (3.36.0-2build1) ... 2021-05-17T17:07:37.3676543Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:37.3706651Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-17T17:07:37.5421933Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T17:07:37.5424989Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T17:07:38.1247615Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-17T17:07:38.4388054Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:38.4434073Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-17T17:07:38.4469998Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:38.4505846Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:07:38.4534674Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:38.4570542Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:38.4608264Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-17T17:07:38.6454308Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:38.6458785Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T17:07:38.6462438Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:38.6465362Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T17:07:38.6989646Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:38.6992414Z if direction is "increasing": 2021-05-17T17:07:38.6995951Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:38.6998484Z elif direction is "decreasing": 2021-05-17T17:07:38.7221363Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:38.7224079Z if direction is "increasing": 2021-05-17T17:07:38.7227666Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:38.7230156Z elif direction is "decreasing": 2021-05-17T17:07:39.8179475Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:39.8181522Z if props["offset_coordinates"] is "data": 2021-05-17T17:07:39.8183782Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T17:07:39.8185384Z if props["coordinates"] is not "data": 2021-05-17T17:07:40.6826875Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-17T17:07:41.3254712Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T17:07:41.3257632Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T17:07:41.3260039Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-17T17:07:42.6346379Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-17T17:07:42.6396245Z First installation detected... 2021-05-17T17:07:42.6398520Z Checking NSS setup... 2021-05-17T17:07:42.6466009Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-17T17:07:42.6522345Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:42.6564783Z Setting up python3-owslib (0.19.1-1) ... 2021-05-17T17:07:42.9821857Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-17T17:07:42.9854993Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-17T17:07:42.9895164Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-17T17:07:42.9937284Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-17T17:07:42.9976069Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-17T17:07:43.0019876Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-17T17:07:43.0053093Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-17T17:07:43.0092330Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-17T17:07:43.0122766Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-17T17:07:43.2406424Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-17T17:07:43.2472745Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-17T17:07:43.2521185Z Setting up grass-core (7.8.2-1build3) ... 2021-05-17T17:07:43.6695411Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. 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Did you mean "=="? 2021-05-17T17:07:43.8368749Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T17:07:43.8371250Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T17:07:43.8373222Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T17:07:43.9097990Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-17T17:07:43.9138628Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:43.9237775Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-17T17:07:43.9275034Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:43.9307467Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:43.9535887Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:43.9572960Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:43.9613818Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:43.9651708Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:07:43.9692956Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:43.9725478Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-17T17:07:44.0770601Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:44.0805899Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:44.0831717Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:44.0864351Z Setting up modemmanager (1.12.8-1) ... 2021-05-17T17:07:44.2380192Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-17T17:07:44.2383078Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-17T17:07:44.8482778Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:44.8528697Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T17:07:44.8569126Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-17T17:07:44.8606294Z Setting up libqt5svg5:amd64 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2021-05-17T17:07:44.9105765Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-17T17:07:44.9141095Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-17T17:07:44.9174823Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:07:44.9212167Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:44.9245927Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-17T17:07:45.1205190Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-17T17:07:45.1292043Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:45.1336401Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:07:45.1374762Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:21.8828075Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:08:21.8864449Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-17T17:08:21.8967962Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:21.8999409Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:08:21.9030696Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:21.9090695Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:21.9124309Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T17:08:21.9158121Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.0895670Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.0938503Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-17T17:08:22.0979607Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.1024038Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-17T17:08:22.1058240Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.3158877Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.3222511Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.3284743Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T17:08:22.3426899Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-17T17:08:22.3607121Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-17T17:08:23.5069069Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T17:08:23.5259465Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-17T17:08:23.5541775Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-17T17:08:23.5726939Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-17T17:08:23.6463090Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:08:23.6834527Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-17T17:08:23.9991920Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:08:38.1644602Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-17T17:08:38.1896602Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-17T17:08:40.5906312Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-17T17:08:40.5906902Z with: 2021-05-17T17:08:40.5907781Z github_slug: neuroconductor/alvin 2021-05-17T17:08:40.5908306Z env: 2021-05-17T17:08:40.5908797Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:08:40.5909322Z TIC_DEPLOY_KEY: 2021-05-17T17:08:40.5910219Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:08:40.5912243Z GITHUB_PAT: *** 2021-05-17T17:08:40.5913135Z COVERALLS_TOKEN: *** 2021-05-17T17:08:40.5913663Z continue-on-error: true 2021-05-17T17:08:40.5914186Z VDIFFR_RUN_TESTS: 2021-05-17T17:08:40.5914724Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:08:40.5915203Z TZ: UTC 2021-05-17T17:08:40.5915629Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:08:40.5916074Z NOT_CRAN: true 2021-05-17T17:08:40.5916491Z ##[endgroup] 2021-05-17T17:08:40.6375776Z repo slug is: neuroconductor/alvin 2021-05-17T17:08:40.6472879Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-17T17:08:40.6473510Z env: 2021-05-17T17:08:40.6473998Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:08:40.6474506Z TIC_DEPLOY_KEY: 2021-05-17T17:08:40.6475393Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:08:40.6476839Z GITHUB_PAT: *** 2021-05-17T17:08:40.6477845Z COVERALLS_TOKEN: *** 2021-05-17T17:08:40.6478388Z continue-on-error: true 2021-05-17T17:08:40.6478901Z VDIFFR_RUN_TESTS: 2021-05-17T17:08:40.6479443Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:08:40.6479939Z TZ: UTC 2021-05-17T17:08:40.6480353Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:08:40.6480811Z NOT_CRAN: true 2021-05-17T17:08:40.6481215Z ##[endgroup] 2021-05-17T17:08:40.9275713Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-17T17:08:40.9276376Z with: 2021-05-17T17:08:40.9276769Z repo_name: alvin 2021-05-17T17:08:40.9277217Z repo_version: 0.3.0 2021-05-17T17:08:40.9277646Z runner_os: Linux 2021-05-17T17:08:40.9278074Z R_version: 4.1 2021-05-17T17:08:40.9278467Z env: 2021-05-17T17:08:40.9278938Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:08:40.9279464Z TIC_DEPLOY_KEY: 2021-05-17T17:08:40.9280342Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:08:40.9281800Z GITHUB_PAT: *** 2021-05-17T17:08:40.9282701Z COVERALLS_TOKEN: *** 2021-05-17T17:08:40.9283252Z continue-on-error: true 2021-05-17T17:08:40.9283770Z VDIFFR_RUN_TESTS: 2021-05-17T17:08:40.9284311Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:08:40.9284801Z TZ: UTC 2021-05-17T17:08:40.9285242Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:08:40.9285708Z NOT_CRAN: true 2021-05-17T17:08:40.9286148Z ##[endgroup] 2021-05-17T17:08:40.9696100Z Package: alvin 2021-05-17T17:08:40.9700759Z Version: 0.3.0 2021-05-17T17:08:40.9701897Z OS: Linux 2021-05-17T17:08:40.9773800Z ##[group]Run install.packages('remotes') 2021-05-17T17:08:40.9774581Z install.packages('remotes') 2021-05-17T17:08:40.9775476Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-17T17:08:40.9776579Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-17T17:08:40.9784004Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:08:40.9784480Z env: 2021-05-17T17:08:40.9784967Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:08:40.9785479Z TIC_DEPLOY_KEY: 2021-05-17T17:08:40.9786372Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:08:40.9787843Z GITHUB_PAT: *** 2021-05-17T17:08:40.9788775Z COVERALLS_TOKEN: *** 2021-05-17T17:08:40.9789325Z continue-on-error: true 2021-05-17T17:08:40.9789853Z VDIFFR_RUN_TESTS: 2021-05-17T17:08:40.9790376Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:08:40.9790885Z TZ: UTC 2021-05-17T17:08:40.9791319Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:08:40.9791758Z NOT_CRAN: true 2021-05-17T17:08:40.9792178Z ##[endgroup] 2021-05-17T17:08:41.2073226Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:08:41.2075744Z (as ‘lib’ is unspecified) 2021-05-17T17:08:57.6655995Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-17T17:08:58.0551699Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-17T17:08:58.0775563Z ================================================== 2021-05-17T17:08:58.0776391Z downloaded 145 KB 2021-05-17T17:08:58.0776820Z 2021-05-17T17:08:58.4063868Z * installing *source* package ‘remotes’ ... 2021-05-17T17:08:58.4111705Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-17T17:08:58.4112822Z ** using staged installation 2021-05-17T17:08:58.4307588Z ** R 2021-05-17T17:08:58.4527854Z ** inst 2021-05-17T17:08:58.4540545Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:09:00.5236768Z ** help 2021-05-17T17:09:00.6226650Z *** installing help indices 2021-05-17T17:09:00.6894735Z ** building package indices 2021-05-17T17:09:00.9651118Z ** installing vignettes 2021-05-17T17:09:00.9699722Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:09:01.1955061Z ** testing if installed package can be loaded from final location 2021-05-17T17:09:01.4412644Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:09:01.4441189Z * DONE (remotes) 2021-05-17T17:09:01.4561149Z 2021-05-17T17:09:01.4567639Z The downloaded source packages are in 2021-05-17T17:09:01.4569181Z ‘/tmp/RtmpZFHf0i/downloaded_packages’ 2021-05-17T17:09:22.7997790Z ##[group]Run actions/cache@v1 2021-05-17T17:09:22.7998263Z with: 2021-05-17T17:09:22.7998730Z path: /home/runner/work/_temp/Library 2021-05-17T17:09:22.8001891Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-e1b13a2001891579800822f114949846d6f6e2069fcace72f9d982ab6fcb4ed3 2021-05-17T17:09:22.8005950Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-17T17:09:22.8007341Z env: 2021-05-17T17:09:22.8007828Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:09:22.8008335Z TIC_DEPLOY_KEY: 2021-05-17T17:09:22.8009226Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:09:22.8011503Z GITHUB_PAT: *** 2021-05-17T17:09:22.8012425Z COVERALLS_TOKEN: *** 2021-05-17T17:09:22.8012972Z continue-on-error: true 2021-05-17T17:09:22.8013499Z VDIFFR_RUN_TESTS: 2021-05-17T17:09:22.8014025Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:09:22.8014598Z TZ: UTC 2021-05-17T17:09:22.8015034Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:09:22.8015489Z NOT_CRAN: true 2021-05-17T17:09:22.8015895Z ##[endgroup] 2021-05-17T17:09:22.8499167Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T17:09:22.8560122Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T17:09:22.8561029Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T17:09:22.8561843Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-17T17:09:22.8562543Z sudo -s eval "$sysreqs" 2021-05-17T17:09:22.8609334Z shell: /usr/bin/bash -e {0} 2021-05-17T17:09:22.8609791Z env: 2021-05-17T17:09:22.8610494Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:09:22.8611026Z TIC_DEPLOY_KEY: 2021-05-17T17:09:22.8611917Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:09:22.8613415Z GITHUB_PAT: *** 2021-05-17T17:09:22.8614319Z COVERALLS_TOKEN: *** 2021-05-17T17:09:22.8614859Z continue-on-error: true 2021-05-17T17:09:22.8615366Z VDIFFR_RUN_TESTS: 2021-05-17T17:09:22.8615902Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:09:22.8616400Z TZ: UTC 2021-05-17T17:09:22.8616849Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:09:22.8617294Z NOT_CRAN: true 2021-05-17T17:09:22.8617817Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-17T17:09:22.8618341Z ##[endgroup] 2021-05-17T17:09:23.0750444Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:09:23.6144309Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-17T17:09:40.7266876Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-17T17:09:40.7267674Z crayon (NA -> 1.4.1) [CRAN] 2021-05-17T17:09:40.7268402Z R6 (NA -> 2.5.0) [CRAN] 2021-05-17T17:09:40.7269060Z desc (NA -> 1.3.0) [CRAN] 2021-05-17T17:09:40.7269722Z debugme (NA -> 1.1.0) [CRAN] 2021-05-17T17:09:40.7298650Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-17T17:09:40.7312748Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:09:40.7313622Z (as ‘lib’ is unspecified) 2021-05-17T17:09:56.7232125Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-17T17:09:58.1993837Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-17T17:09:58.1996229Z ================================================== 2021-05-17T17:09:58.1997474Z downloaded 60 KB 2021-05-17T17:09:58.1998367Z 2021-05-17T17:09:58.2035606Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-17T17:09:58.4747376Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-17T17:09:58.5777464Z ================================================== 2021-05-17T17:09:58.5779327Z downloaded 34 KB 2021-05-17T17:09:58.5780280Z 2021-05-17T17:09:58.5816470Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-17T17:09:58.9572897Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-17T17:09:58.9574061Z ================================================== 2021-05-17T17:09:58.9574758Z downloaded 62 KB 2021-05-17T17:09:58.9575216Z 2021-05-17T17:09:58.9685942Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-17T17:09:59.3433958Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-17T17:09:59.3663353Z ================================================== 2021-05-17T17:09:59.3665486Z downloaded 285 KB 2021-05-17T17:09:59.3665823Z 2021-05-17T17:09:59.3708814Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-17T17:09:59.7585647Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-17T17:09:59.8013169Z ================================================== 2021-05-17T17:09:59.8014141Z downloaded 973 KB 2021-05-17T17:09:59.8014772Z 2021-05-17T17:10:00.1143238Z * installing *source* package ‘rprojroot’ ... 2021-05-17T17:10:00.1169591Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:00.1172388Z ** using staged installation 2021-05-17T17:10:00.1321262Z ** R 2021-05-17T17:10:00.1372096Z ** inst 2021-05-17T17:10:00.1382855Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:00.6664501Z ** help 2021-05-17T17:10:00.6972612Z *** installing help indices 2021-05-17T17:10:00.7290566Z *** copying figures 2021-05-17T17:10:00.7295692Z ** building package indices 2021-05-17T17:10:00.9766149Z ** installing vignettes 2021-05-17T17:10:00.9782265Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:01.1871084Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:01.4146999Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:01.4158069Z * DONE (rprojroot) 2021-05-17T17:10:01.6990457Z * installing *source* package ‘crayon’ ... 2021-05-17T17:10:01.7010440Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:01.7011666Z ** using staged installation 2021-05-17T17:10:01.7158783Z ** R 2021-05-17T17:10:01.7258933Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:02.6732354Z ** help 2021-05-17T17:10:02.7407398Z *** installing help indices 2021-05-17T17:10:02.7835613Z ** building package indices 2021-05-17T17:10:03.0556345Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:03.2747260Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:03.4916527Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:03.4927411Z * DONE (crayon) 2021-05-17T17:10:03.7667984Z * installing *source* package ‘R6’ ... 2021-05-17T17:10:03.7686372Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:03.7687551Z ** using staged installation 2021-05-17T17:10:03.7830452Z ** R 2021-05-17T17:10:03.7906376Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:04.3411421Z ** help 2021-05-17T17:10:04.3603635Z *** installing help indices 2021-05-17T17:10:04.3819257Z *** copying figures 2021-05-17T17:10:04.3821661Z ** building package indices 2021-05-17T17:10:04.6089572Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:04.8229790Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:05.0395197Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:05.0402371Z * DONE (R6) 2021-05-17T17:10:05.4126801Z * installing *source* package ‘desc’ ... 2021-05-17T17:10:05.4185202Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:05.4186526Z ** using staged installation 2021-05-17T17:10:05.4407479Z ** R 2021-05-17T17:10:05.4554094Z ** inst 2021-05-17T17:10:05.4572630Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:07.2364779Z ** help 2021-05-17T17:10:07.3946942Z *** installing help indices 2021-05-17T17:10:07.5067637Z ** building package indices 2021-05-17T17:10:07.8173292Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:08.0511028Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:08.3245937Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:08.3267552Z * DONE (desc) 2021-05-17T17:10:08.6417031Z * installing *source* package ‘debugme’ ... 2021-05-17T17:10:08.6454360Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-17T17:10:08.6455689Z ** using staged installation 2021-05-17T17:10:08.6578510Z ** R 2021-05-17T17:10:08.6614622Z ** inst 2021-05-17T17:10:08.6636319Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:09.0571307Z ** help 2021-05-17T17:10:09.0704787Z *** installing help indices 2021-05-17T17:10:09.0947441Z ** building package indices 2021-05-17T17:10:09.3123617Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:09.5401529Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:09.7591455Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:09.7598707Z * DONE (debugme) 2021-05-17T17:10:09.7660132Z 2021-05-17T17:10:09.7661172Z The downloaded source packages are in 2021-05-17T17:10:09.7664163Z ‘/tmp/RtmpI97aPt/downloaded_packages’ 2021-05-17T17:10:09.7673490Z Running `R CMD build`... 2021-05-17T17:10:10.0349895Z * checking for file ‘/tmp/RtmpI97aPt/remotes69a82fffe865/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-17T17:10:10.0351683Z * preparing ‘sysreqs’: 2021-05-17T17:10:10.0352894Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:10:10.0354290Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:10:10.0355477Z * checking for empty or unneeded directories 2021-05-17T17:10:10.0356604Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:10:10.0357666Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-17T17:10:10.0359768Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:10:10.0360846Z (as ‘lib’ is unspecified) 2021-05-17T17:10:10.2741828Z * installing *source* package ‘sysreqs’ ... 2021-05-17T17:10:10.2743616Z ** using staged installation 2021-05-17T17:10:10.2940811Z ** R 2021-05-17T17:10:10.2979070Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:10:10.7094918Z ** help 2021-05-17T17:10:10.7350358Z *** installing help indices 2021-05-17T17:10:10.7546773Z ** building package indices 2021-05-17T17:10:10.9884299Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:10:11.2358940Z ** testing if installed package can be loaded from final location 2021-05-17T17:10:11.4754291Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:10:11.4760619Z * DONE (sysreqs) 2021-05-17T17:10:30.1287119Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T17:10:30.1289729Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-17T17:10:30.1292463Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-17T17:10:30.1390824Z Hit:4 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-17T17:10:30.2184974Z Hit:5 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T17:10:30.7561888Z Hit:6 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T17:10:30.7564252Z Hit:7 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-17T17:10:30.7565670Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-17T17:10:30.7567682Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T17:10:32.2780148Z Reading package lists... 2021-05-17T17:10:32.3728255Z Reading package lists... 2021-05-17T17:10:32.5691702Z Building dependency tree... 2021-05-17T17:10:32.5717070Z Reading state information... 2021-05-17T17:10:32.7557622Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-17T17:10:32.7559381Z libicu-dev set to manually installed. 2021-05-17T17:10:32.7560686Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-17T17:10:32.7561921Z pandoc is already the newest version (2.7.3-1). 2021-05-17T17:10:32.7562987Z The following additional packages will be installed: 2021-05-17T17:10:32.7564408Z libbibutils6 libghc-pandoc-citeproc-data 2021-05-17T17:10:32.7569076Z Suggested packages: 2021-05-17T17:10:32.7570740Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-17T17:10:32.8084915Z The following NEW packages will be installed: 2021-05-17T17:10:32.8092183Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-17T17:10:32.8093718Z pandoc-citeproc 2021-05-17T17:10:32.8367682Z 0 upgraded, 4 newly installed, 0 to remove and 30 not upgraded. 2021-05-17T17:10:32.8368880Z Need to get 13.7 MB of archives. 2021-05-17T17:10:32.8371519Z After this operation, 109 MB of additional disk space will be used. 2021-05-17T17:10:32.8373611Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-17T17:10:32.8537951Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-17T17:10:32.8680979Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-17T17:10:32.8687798Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-17T17:10:33.5990012Z Fetched 13.7 MB in 0s (53.2 MB/s) 2021-05-17T17:10:33.6418365Z Selecting previously unselected package libbibutils6. 2021-05-17T17:10:33.6528211Z (Reading database ... 2021-05-17T17:10:33.6529143Z (Reading database ... 5% 2021-05-17T17:10:33.6530381Z (Reading database ... 10% 2021-05-17T17:10:33.6531282Z (Reading database ... 15% 2021-05-17T17:10:33.6531868Z (Reading database ... 20% 2021-05-17T17:10:33.6532482Z (Reading database ... 25% 2021-05-17T17:10:33.6533017Z (Reading database ... 30% 2021-05-17T17:10:33.6533563Z (Reading database ... 35% 2021-05-17T17:10:33.6534096Z (Reading database ... 40% 2021-05-17T17:10:33.6534664Z (Reading database ... 45% 2021-05-17T17:10:33.6542030Z (Reading database ... 50% 2021-05-17T17:10:33.6601626Z (Reading database ... 55% 2021-05-17T17:10:33.6675186Z (Reading database ... 60% 2021-05-17T17:10:33.6744040Z (Reading database ... 65% 2021-05-17T17:10:33.7014185Z (Reading database ... 70% 2021-05-17T17:10:33.7053918Z (Reading database ... 75% 2021-05-17T17:10:33.7376055Z (Reading database ... 80% 2021-05-17T17:10:33.7508211Z (Reading database ... 85% 2021-05-17T17:10:33.8004834Z (Reading database ... 90% 2021-05-17T17:10:33.8106648Z (Reading database ... 95% 2021-05-17T17:10:33.8107288Z (Reading database ... 100% 2021-05-17T17:10:33.8108134Z (Reading database ... 285139 files and directories currently installed.) 2021-05-17T17:10:33.8259317Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ... 2021-05-17T17:10:33.8292806Z Unpacking libbibutils6 (6.2-1) ... 2021-05-17T17:10:33.9259639Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-17T17:10:33.9644368Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-17T17:10:33.9659109Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T17:10:34.0412904Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-17T17:10:34.0728490Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-17T17:10:34.0741907Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T17:10:34.1173846Z Selecting previously unselected package pandoc-citeproc. 2021-05-17T17:10:34.1477007Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-17T17:10:34.1491751Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T17:10:34.1528269Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-17T17:10:35.8064964Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T17:10:35.8100414Z Setting up libbibutils6 (6.2-1) ... 2021-05-17T17:10:35.8135441Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T17:10:35.8160100Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T17:10:35.8195325Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T17:10:39.9761508Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T17:10:42.4519673Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-17T17:10:42.4520462Z remotes::install_github("ropensci/tic") 2021-05-17T17:10:42.4521211Z remotes::install_github("muschellij2/ghtravis") 2021-05-17T17:10:42.4523300Z remotes::install_github("muschellij2/aghast") 2021-05-17T17:10:42.4526426Z remotes::install_cran("covr") 2021-05-17T17:10:42.4553997Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:10:42.4554823Z env: 2021-05-17T17:10:42.4598352Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:10:42.4600796Z TIC_DEPLOY_KEY: 2021-05-17T17:10:42.4602002Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:10:42.4605295Z GITHUB_PAT: *** 2021-05-17T17:10:42.4630069Z COVERALLS_TOKEN: *** 2021-05-17T17:10:42.4630756Z continue-on-error: true 2021-05-17T17:10:42.4631288Z VDIFFR_RUN_TESTS: 2021-05-17T17:10:42.4632020Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:10:42.4632581Z TZ: UTC 2021-05-17T17:10:42.4633019Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:10:42.4633468Z NOT_CRAN: true 2021-05-17T17:10:42.4633929Z ##[endgroup] 2021-05-17T17:10:42.6875034Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:10:43.2197918Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-17T17:11:01.8778174Z rlang (NA -> 0.4.11) [CRAN] 2021-05-17T17:11:01.8778981Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-17T17:11:01.8779675Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-17T17:11:01.8780324Z sys (NA -> 3.4 ) [CRAN] 2021-05-17T17:11:01.8781003Z askpass (NA -> 1.1 ) [CRAN] 2021-05-17T17:11:01.8781683Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-17T17:11:01.8782365Z mime (NA -> 0.10 ) [CRAN] 2021-05-17T17:11:01.8783024Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-17T17:11:01.8783687Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-17T17:11:01.8784361Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-17T17:11:01.8784998Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-17T17:11:01.8785710Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-17T17:11:01.8786442Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-17T17:11:01.8787119Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-17T17:11:01.8787850Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-17T17:11:01.8788576Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-17T17:11:01.8789274Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-17T17:11:01.8789941Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-17T17:11:01.8790582Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-17T17:11:01.8791258Z whisker (NA -> 0.4 ) [CRAN] 2021-05-17T17:11:01.8791951Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-17T17:11:01.8792623Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-17T17:11:01.8793310Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-17T17:11:01.8793977Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-17T17:11:01.8794633Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-17T17:11:01.8795280Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-17T17:11:01.8795922Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-17T17:11:01.8796600Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-17T17:11:01.8797279Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-17T17:11:01.8797947Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-17T17:11:01.8798931Z git2r (NA -> 0.28.0) [CRAN] 2021-05-17T17:11:01.8877424Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-17T17:11:01.8889835Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:11:01.8891144Z (as ‘lib’ is unspecified) 2021-05-17T17:11:18.2531682Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-17T17:11:19.7908626Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-17T17:11:19.8741408Z ================================================== 2021-05-17T17:11:19.8742539Z downloaded 839 KB 2021-05-17T17:11:19.8743472Z 2021-05-17T17:11:19.8780298Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-17T17:11:22.8100614Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-17T17:11:22.8308686Z ================================================== 2021-05-17T17:11:22.8309872Z downloaded 258 KB 2021-05-17T17:11:22.8310470Z 2021-05-17T17:11:22.8346055Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-17T17:11:23.2122890Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-17T17:11:23.2199233Z ================================================== 2021-05-17T17:11:23.2200382Z downloaded 97 KB 2021-05-17T17:11:23.2200997Z 2021-05-17T17:11:23.2255939Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-17T17:11:25.7680428Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-17T17:11:25.7682032Z ================================================== 2021-05-17T17:11:25.7682858Z downloaded 19 KB 2021-05-17T17:11:25.7683407Z 2021-05-17T17:11:25.7723348Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-17T17:11:26.1589291Z Content type 'application/x-tar' length 5688 bytes 2021-05-17T17:11:26.1590632Z ================================================== 2021-05-17T17:11:26.1591522Z downloaded 5688 bytes 2021-05-17T17:11:26.1592101Z 2021-05-17T17:11:26.1649700Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-17T17:11:26.5454456Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-17T17:11:26.6054759Z ================================================== 2021-05-17T17:11:26.6055809Z downloaded 1.3 MB 2021-05-17T17:11:26.6056443Z 2021-05-17T17:11:26.6098187Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-17T17:11:27.1369051Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-17T17:11:27.1370877Z ================================================== 2021-05-17T17:11:27.1371563Z downloaded 12 KB 2021-05-17T17:11:27.1372001Z 2021-05-17T17:11:27.1422835Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-17T17:11:27.4698028Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-17T17:11:27.5054206Z ================================================== 2021-05-17T17:11:27.5055210Z downloaded 779 KB 2021-05-17T17:11:27.5055826Z 2021-05-17T17:11:27.5104930Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-17T17:11:27.8899370Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-17T17:11:27.9222732Z ================================================== 2021-05-17T17:11:27.9224247Z downloaded 412 KB 2021-05-17T17:11:27.9224942Z 2021-05-17T17:11:27.9262292Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-17T17:11:28.3405347Z Content type 'application/x-tar' length 3475 bytes 2021-05-17T17:11:28.3406145Z ================================================== 2021-05-17T17:11:28.3406659Z downloaded 3475 bytes 2021-05-17T17:11:28.3406984Z 2021-05-17T17:11:28.3454848Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-17T17:11:28.8727106Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-17T17:11:28.8896553Z ================================================== 2021-05-17T17:11:28.8897649Z downloaded 156 KB 2021-05-17T17:11:28.8898187Z 2021-05-17T17:11:28.8937112Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-17T17:11:29.2863594Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-17T17:11:29.2865284Z ================================================== 2021-05-17T17:11:29.2866240Z downloaded 60 KB 2021-05-17T17:11:29.2866786Z 2021-05-17T17:11:29.2904885Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-17T17:11:30.8971760Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-17T17:11:30.9153195Z ================================================== 2021-05-17T17:11:30.9154108Z downloaded 154 KB 2021-05-17T17:11:30.9154624Z 2021-05-17T17:11:30.9194051Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-17T17:11:31.3137922Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-17T17:11:31.3436552Z ================================================== 2021-05-17T17:11:31.3437195Z downloaded 110 KB 2021-05-17T17:11:31.3437518Z 2021-05-17T17:11:31.3479482Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-17T17:11:31.7615598Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-17T17:11:31.7774072Z ================================================== 2021-05-17T17:11:31.7774795Z downloaded 107 KB 2021-05-17T17:11:31.7775160Z 2021-05-17T17:11:31.7820057Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-17T17:11:32.1776630Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-17T17:11:32.1994261Z ================================================== 2021-05-17T17:11:32.1994851Z downloaded 225 KB 2021-05-17T17:11:32.1995179Z 2021-05-17T17:11:32.2033705Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-17T17:11:32.5811878Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-17T17:11:32.5812705Z ================================================== 2021-05-17T17:11:32.5813261Z downloaded 43 KB 2021-05-17T17:11:32.5813604Z 2021-05-17T17:11:32.5853927Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-17T17:11:32.9653610Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-17T17:11:32.9727941Z ================================================== 2021-05-17T17:11:32.9728562Z downloaded 90 KB 2021-05-17T17:11:32.9728882Z 2021-05-17T17:11:32.9772506Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-17T17:11:33.5079699Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-17T17:11:33.5155160Z ================================================== 2021-05-17T17:11:33.5156095Z downloaded 92 KB 2021-05-17T17:11:33.5156567Z 2021-05-17T17:11:33.5221592Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-17T17:11:34.4549540Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-17T17:11:34.4554763Z ================================================== 2021-05-17T17:11:34.4555590Z downloaded 28 KB 2021-05-17T17:11:34.4556293Z 2021-05-17T17:11:34.4612207Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-17T17:11:34.8709858Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-17T17:11:34.8712238Z ================================================== 2021-05-17T17:11:34.8712759Z downloaded 12 KB 2021-05-17T17:11:34.8713075Z 2021-05-17T17:11:34.8753988Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-17T17:11:35.2866083Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-17T17:11:35.3168372Z ================================================== 2021-05-17T17:11:35.3169376Z downloaded 364 KB 2021-05-17T17:11:35.3169923Z 2021-05-17T17:11:35.3206435Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-17T17:11:35.6985743Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-17T17:11:35.7064545Z ================================================== 2021-05-17T17:11:35.7065540Z downloaded 81 KB 2021-05-17T17:11:35.7066099Z 2021-05-17T17:11:35.7131010Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-17T17:11:36.0932166Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-17T17:11:36.0933290Z ================================================== 2021-05-17T17:11:36.0933997Z downloaded 44 KB 2021-05-17T17:11:36.0934495Z 2021-05-17T17:11:36.0969329Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-17T17:11:36.5766699Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-17T17:11:36.5772069Z ================================================== 2021-05-17T17:11:36.5772999Z downloaded 64 KB 2021-05-17T17:11:36.5773589Z 2021-05-17T17:11:36.5816078Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-17T17:11:36.9751464Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-17T17:11:37.1110177Z ================================================== 2021-05-17T17:11:37.1111169Z downloaded 781 KB 2021-05-17T17:11:37.1111811Z 2021-05-17T17:11:37.1158568Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-17T17:11:37.5000411Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-17T17:11:37.5070623Z ================================================== 2021-05-17T17:11:37.5071225Z downloaded 20 KB 2021-05-17T17:11:37.5071549Z 2021-05-17T17:11:37.5113926Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-17T17:11:37.9107312Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-17T17:11:37.9108779Z ================================================== 2021-05-17T17:11:37.9109523Z downloaded 24 KB 2021-05-17T17:11:37.9110026Z 2021-05-17T17:11:37.9159111Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-17T17:11:38.3013500Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-17T17:11:38.3329036Z ================================================== 2021-05-17T17:11:38.3330464Z downloaded 297 KB 2021-05-17T17:11:38.3331118Z 2021-05-17T17:11:38.3367010Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-17T17:11:38.7159667Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-17T17:11:38.7163829Z ================================================== 2021-05-17T17:11:38.7164348Z downloaded 17 KB 2021-05-17T17:11:38.7164668Z 2021-05-17T17:11:38.7211812Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-17T17:11:39.9467146Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-17T17:11:39.9928331Z ================================================== 2021-05-17T17:11:39.9929745Z downloaded 1.2 MB 2021-05-17T17:11:39.9930392Z 2021-05-17T17:11:40.6124721Z * installing *source* package ‘rlang’ ... 2021-05-17T17:11:40.6282703Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:40.6283657Z ** using staged installation 2021-05-17T17:11:40.6517284Z ** libs 2021-05-17T17:11:40.6589030Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-17T17:11:40.8013992Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-17T17:11:41.2142775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-17T17:11:43.8249848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-17T17:11:44.9647565Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:11:45.0136821Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:45.0732532Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-17T17:11:45.0740260Z ** R 2021-05-17T17:11:45.1304215Z ** inst 2021-05-17T17:11:45.1313579Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:48.9354630Z ** help 2021-05-17T17:11:49.7192250Z *** installing help indices 2021-05-17T17:11:50.0336137Z *** copying figures 2021-05-17T17:11:50.0341530Z ** building package indices 2021-05-17T17:11:50.6153013Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:50.8910792Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:50.9842121Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:51.3357265Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:51.3388444Z * DONE (rlang) 2021-05-17T17:11:51.6473441Z * installing *source* package ‘magrittr’ ... 2021-05-17T17:11:51.6503238Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:51.6504515Z ** using staged installation 2021-05-17T17:11:51.6648220Z ** libs 2021-05-17T17:11:51.6702556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-17T17:11:51.8148774Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:11:51.8789193Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:51.9095395Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-17T17:11:51.9109962Z ** R 2021-05-17T17:11:51.9159198Z ** inst 2021-05-17T17:11:51.9178485Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:52.2500485Z ** help 2021-05-17T17:11:52.2959825Z *** installing help indices 2021-05-17T17:11:52.3306179Z *** copying figures 2021-05-17T17:11:52.3308805Z ** building package indices 2021-05-17T17:11:52.5889111Z ** installing vignettes 2021-05-17T17:11:52.5956532Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:52.8145962Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:52.8352108Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:53.7800586Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:53.7802584Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-17T17:11:53.7803714Z * DONE (magrittr) 2021-05-17T17:11:53.7804872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:53.7806479Z * installing *source* package ‘glue’ ... 2021-05-17T17:11:53.7807675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-17T17:11:53.7809797Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:53.7811364Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:53.7812504Z ** using staged installation 2021-05-17T17:11:53.7813103Z ** libs 2021-05-17T17:11:53.7814182Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-17T17:11:53.7814946Z ** R 2021-05-17T17:11:53.7815418Z ** inst 2021-05-17T17:11:53.7816372Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:54.2331037Z ** help 2021-05-17T17:11:54.2666581Z *** installing help indices 2021-05-17T17:11:54.2997551Z *** copying figures 2021-05-17T17:11:54.3000404Z ** building package indices 2021-05-17T17:11:54.5394912Z ** installing vignettes 2021-05-17T17:11:54.5457536Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:54.8016764Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:54.8221563Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:55.0768303Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:55.0776948Z * DONE (glue) 2021-05-17T17:11:55.3568961Z * installing *source* package ‘sys’ ... 2021-05-17T17:11:55.3599999Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:55.3601204Z ** using staged installation 2021-05-17T17:11:55.3840609Z ** libs 2021-05-17T17:11:55.3903645Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-17T17:11:55.6322323Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:55.6889046Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:55.7172697Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-17T17:11:55.7184205Z ** R 2021-05-17T17:11:55.7221527Z ** inst 2021-05-17T17:11:55.7230425Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:56.0482064Z ** help 2021-05-17T17:11:56.0713717Z *** installing help indices 2021-05-17T17:11:56.0929386Z ** building package indices 2021-05-17T17:11:56.3311688Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:56.5450302Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:56.5674239Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:56.7792530Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:56.7801639Z * DONE (sys) 2021-05-17T17:11:57.0216406Z * installing *source* package ‘mime’ ... 2021-05-17T17:11:57.0226705Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:57.0228238Z ** using staged installation 2021-05-17T17:11:57.0377403Z ** libs 2021-05-17T17:11:57.0438073Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:11:57.0969720Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-17T17:11:57.1761058Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:11:57.1943930Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-17T17:11:57.1962770Z ** R 2021-05-17T17:11:57.2048580Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:11:57.5842286Z ** help 2021-05-17T17:11:57.6128402Z *** installing help indices 2021-05-17T17:11:57.6327007Z ** building package indices 2021-05-17T17:11:57.8620944Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:11:58.0794711Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:11:58.1111722Z ** testing if installed package can be loaded from final location 2021-05-17T17:11:58.3156339Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:11:58.3162837Z * DONE (mime) 2021-05-17T17:11:58.7300669Z * installing *source* package ‘curl’ ... 2021-05-17T17:11:58.7391031Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-17T17:11:58.7392711Z ** using staged installation 2021-05-17T17:11:58.7491728Z Found pkg-config cflags and libs! 2021-05-17T17:11:58.8518713Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-17T17:11:58.8520097Z Using PKG_LIBS=-lcurl 2021-05-17T17:11:58.9145562Z ** libs 2021-05-17T17:11:58.9231304Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-17T17:11:58.9261606Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-17T17:11:59.0181454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-17T17:11:59.1659229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-17T17:11:59.2700446Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-17T17:11:59.3419371Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-17T17:11:59.4697798Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-17T17:11:59.5579458Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-17T17:11:59.6228061Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-17T17:12:00.0246220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-17T17:12:00.0712563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:00.1377327Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-17T17:12:00.2198071Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-17T17:12:00.4370518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-17T17:12:00.5097613Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-17T17:12:00.5742748Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T17:12:00.6268374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T17:12:00.6890571Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-17T17:12:00.7575183Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:12:00.9086626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:12:00.9907041Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-17T17:12:01.0165852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T17:12:01.0795178Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:01.1295930Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-17T17:12:01.1296769Z ** R 2021-05-17T17:12:01.1392497Z ** inst 2021-05-17T17:12:01.1435155Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:01.7379643Z ** help 2021-05-17T17:12:01.7935919Z *** installing help indices 2021-05-17T17:12:01.8359857Z ** building package indices 2021-05-17T17:12:02.0971236Z ** installing vignettes 2021-05-17T17:12:02.1034623Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:02.3279399Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:02.3507148Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:02.5738419Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:02.5752564Z * DONE (curl) 2021-05-17T17:12:02.9524465Z * installing *source* package ‘jsonlite’ ... 2021-05-17T17:12:02.9586158Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:02.9587470Z ** using staged installation 2021-05-17T17:12:02.9745782Z ** libs 2021-05-17T17:12:03.7842966Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:12:03.7847814Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-17T17:12:03.7851922Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-17T17:12:03.7855724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-17T17:12:03.7859445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-17T17:12:03.7863085Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-17T17:12:03.7866739Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-17T17:12:03.7872114Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-17T17:12:03.7876968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-17T17:12:03.7880965Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-17T17:12:03.8592891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-17T17:12:03.9404480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-17T17:12:04.0407276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-17T17:12:04.1243891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-17T17:12:04.2082274Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-17T17:12:04.2809556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-17T17:12:04.3503919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-17T17:12:04.4044048Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-17T17:12:04.4860903Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-17T17:12:04.5504087Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-17T17:12:04.6154250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-17T17:12:04.6884111Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-17T17:12:04.7262595Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-17T17:12:04.7846306Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-17T17:12:04.8969880Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-17T17:12:05.1878665Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-17T17:12:05.5016371Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-17T17:12:05.7235222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-17T17:12:05.9049049Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-17T17:12:05.9155900Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:05.9533624Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-17T17:12:05.9551618Z ** R 2021-05-17T17:12:05.9734992Z ** inst 2021-05-17T17:12:05.9756321Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:07.1346666Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-17T17:12:07.1348843Z ** help 2021-05-17T17:12:07.1752165Z *** installing help indices 2021-05-17T17:12:07.2113001Z ** building package indices 2021-05-17T17:12:07.4571210Z ** installing vignettes 2021-05-17T17:12:07.4644223Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:07.6903667Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:07.7200563Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:07.9732342Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:07.9749444Z * DONE (jsonlite) 2021-05-17T17:12:08.2301411Z * installing *source* package ‘ini’ ... 2021-05-17T17:12:08.2314707Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:08.2318897Z ** using staged installation 2021-05-17T17:12:08.2449925Z ** R 2021-05-17T17:12:08.2483812Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:08.5651307Z ** help 2021-05-17T17:12:08.5811852Z *** installing help indices 2021-05-17T17:12:08.6069057Z ** building package indices 2021-05-17T17:12:08.8432709Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:09.0480346Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:09.2652868Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:09.2656199Z * DONE (ini) 2021-05-17T17:12:09.5327344Z * installing *source* package ‘gitcreds’ ... 2021-05-17T17:12:09.5348139Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:09.5350539Z ** using staged installation 2021-05-17T17:12:09.5472631Z ** R 2021-05-17T17:12:09.5540602Z ** inst 2021-05-17T17:12:09.5552903Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:10.1171725Z ** help 2021-05-17T17:12:10.1429925Z *** installing help indices 2021-05-17T17:12:10.1690588Z ** building package indices 2021-05-17T17:12:10.4129365Z ** installing vignettes 2021-05-17T17:12:10.4191324Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:10.6219352Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:10.8321663Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:10.8322732Z * DONE (gitcreds) 2021-05-17T17:12:11.1167115Z * installing *source* package ‘zip’ ... 2021-05-17T17:12:11.1198444Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:11.1202580Z ** using staged installation 2021-05-17T17:12:11.1312871Z ** libs 2021-05-17T17:12:11.1367101Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-17T17:12:14.3321748Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-17T17:12:17.4690979Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:17.5316822Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-17T17:12:20.3844022Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-17T17:12:20.4943524Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-17T17:12:20.6571112Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-17T17:12:20.7387979Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:20.7733428Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-17T17:12:20.7777476Z ** R 2021-05-17T17:12:20.7820837Z ** inst 2021-05-17T17:12:20.7833740Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:21.1756202Z ** help 2021-05-17T17:12:21.1998956Z *** installing help indices 2021-05-17T17:12:21.2281565Z ** building package indices 2021-05-17T17:12:21.4783698Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:21.6958855Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:21.7174024Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:21.9278374Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:21.9285118Z * DONE (zip) 2021-05-17T17:12:22.2901533Z * installing *source* package ‘rstudioapi’ ... 2021-05-17T17:12:22.2954015Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:22.2955228Z ** using staged installation 2021-05-17T17:12:22.3103241Z ** R 2021-05-17T17:12:22.3220890Z ** inst 2021-05-17T17:12:22.3243482Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:22.9283240Z ** help 2021-05-17T17:12:23.1339037Z *** installing help indices 2021-05-17T17:12:23.2737447Z *** copying figures 2021-05-17T17:12:23.2740145Z ** building package indices 2021-05-17T17:12:23.6262510Z ** installing vignettes 2021-05-17T17:12:23.6348327Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:23.8478491Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:24.0562349Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:24.0591891Z * DONE (rstudioapi) 2021-05-17T17:12:24.3385669Z * installing *source* package ‘fastmap’ ... 2021-05-17T17:12:24.3431798Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:24.3433079Z ** using staged installation 2021-05-17T17:12:24.3646716Z ** libs 2021-05-17T17:12:24.3707249Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-17T17:12:26.7349197Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:26.7899805Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:26.8653048Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-17T17:12:26.8663312Z ** R 2021-05-17T17:12:26.8718470Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:27.3513776Z ** help 2021-05-17T17:12:27.3712470Z *** installing help indices 2021-05-17T17:12:27.3918504Z ** building package indices 2021-05-17T17:12:27.6120966Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:27.8251692Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:27.8478040Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:28.0555732Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:28.0563580Z * DONE (fastmap) 2021-05-17T17:12:28.3437204Z * installing *source* package ‘yaml’ ... 2021-05-17T17:12:28.3465637Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:28.3469069Z ** using staged installation 2021-05-17T17:12:28.3573932Z ** libs 2021-05-17T17:12:28.3630047Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-17T17:12:28.7440926Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-17T17:12:28.8865734Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-17T17:12:30.0133797Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-17T17:12:30.2141712Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-17T17:12:30.3714030Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-17T17:12:30.8143447Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-17T17:12:31.1739266Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-17T17:12:31.3012875Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-17T17:12:31.8161181Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-17T17:12:31.9422857Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-17T17:12:33.5045806Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T17:12:33.5884479Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:33.6240585Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-17T17:12:33.6263327Z ** R 2021-05-17T17:12:33.6292925Z ** inst 2021-05-17T17:12:33.6308299Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:33.9331101Z ** help 2021-05-17T17:12:33.9550512Z *** installing help indices 2021-05-17T17:12:33.9839222Z ** building package indices 2021-05-17T17:12:34.2215375Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:34.4373501Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:34.4588556Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:34.6748404Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:34.6754967Z * DONE (yaml) 2021-05-17T17:12:34.9795462Z * installing *source* package ‘withr’ ... 2021-05-17T17:12:34.9827395Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:34.9830958Z ** using staged installation 2021-05-17T17:12:35.0012180Z ** R 2021-05-17T17:12:35.0111628Z ** inst 2021-05-17T17:12:35.0123611Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:35.7849147Z ** help 2021-05-17T17:12:35.8749208Z *** installing help indices 2021-05-17T17:12:35.9431376Z *** copying figures 2021-05-17T17:12:35.9433830Z ** building package indices 2021-05-17T17:12:36.2331445Z ** installing vignettes 2021-05-17T17:12:36.2438087Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:36.4479265Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:36.6577461Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:36.6586484Z * DONE (withr) 2021-05-17T17:12:36.9290101Z * installing *source* package ‘whisker’ ... 2021-05-17T17:12:36.9308998Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:36.9310058Z ** using staged installation 2021-05-17T17:12:36.9416195Z ** R 2021-05-17T17:12:36.9463783Z ** inst 2021-05-17T17:12:36.9483934Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:37.4425434Z ** help 2021-05-17T17:12:37.4685632Z *** installing help indices 2021-05-17T17:12:37.4993334Z ** building package indices 2021-05-17T17:12:37.7315675Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:37.9388633Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:38.1410415Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:38.1420851Z * DONE (whisker) 2021-05-17T17:12:38.4172177Z * installing *source* package ‘rappdirs’ ... 2021-05-17T17:12:38.4187016Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:38.4188688Z ** using staged installation 2021-05-17T17:12:38.4455192Z ** libs 2021-05-17T17:12:38.4518344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:12:38.5138314Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-17T17:12:38.5723606Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:12:38.5903581Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-17T17:12:38.5917782Z ** R 2021-05-17T17:12:38.5964082Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:12:38.9540911Z ** help 2021-05-17T17:12:38.9824302Z *** installing help indices 2021-05-17T17:12:39.0070982Z ** building package indices 2021-05-17T17:12:39.2448742Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:12:39.4655426Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:12:39.4909653Z ** testing if installed package can be loaded from final location 2021-05-17T17:12:39.6973973Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:12:39.6980141Z * DONE (rappdirs) 2021-05-17T17:12:40.2759669Z * installing *source* package ‘fs’ ... 2021-05-17T17:12:40.2915409Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-17T17:12:40.2919310Z ** using staged installation 2021-05-17T17:12:40.3104407Z ** libs 2021-05-17T17:12:40.3174834Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-17T17:12:41.0055045Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-17T17:12:41.5194615Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-17T17:12:41.9818679Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-17T17:12:42.0820345Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-17T17:12:42.4581806Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-17T17:12:42.8292847Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-17T17:12:42.9542805Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-17T17:12:43.4616852Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-17T17:12:43.8018435Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-17T17:12:43.9193464Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-17T17:12:44.2899853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-17T17:12:44.4414825Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-17T17:12:44.4915043Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-17T17:12:44.5303469Z (cd libuv-1.38.1 \ 2021-05-17T17:12:44.5305848Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-17T17:12:50.3238374Z make --directory=libuv-1.38.1 \ 2021-05-17T17:12:50.3239466Z HAVE_DTRACE=0 2021-05-17T17:12:50.3358919Z make[1]: Entering directory '/tmp/RtmpJLtPuj/R.INSTALL794d60df4cd9/fs/src/libuv-1.38.1' 2021-05-17T17:12:50.3470308Z CC src/libuv_la-fs-poll.lo 2021-05-17T17:12:51.1320090Z CC src/libuv_la-idna.lo 2021-05-17T17:12:51.8986843Z CC src/libuv_la-inet.lo 2021-05-17T17:12:52.6841262Z CC src/libuv_la-random.lo 2021-05-17T17:12:53.3378155Z CC src/libuv_la-strscpy.lo 2021-05-17T17:12:53.9224467Z CC src/libuv_la-threadpool.lo 2021-05-17T17:12:54.7159365Z CC src/libuv_la-timer.lo 2021-05-17T17:12:55.4601709Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-17T17:12:56.0984629Z CC src/libuv_la-uv-common.lo 2021-05-17T17:12:57.4088828Z CC src/libuv_la-version.lo 2021-05-17T17:12:58.0097727Z CC src/unix/libuv_la-async.lo 2021-05-17T17:12:58.7480325Z CC src/unix/libuv_la-core.lo 2021-05-17T17:13:00.1539361Z CC src/unix/libuv_la-dl.lo 2021-05-17T17:13:00.7940237Z CC src/unix/libuv_la-fs.lo 2021-05-17T17:13:02.6199687Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-17T17:13:03.4017068Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-17T17:13:04.0677671Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-17T17:13:04.8086774Z CC src/unix/libuv_la-loop.lo 2021-05-17T17:13:05.5254822Z CC src/unix/libuv_la-pipe.lo 2021-05-17T17:13:06.3047592Z CC src/unix/libuv_la-poll.lo 2021-05-17T17:13:07.0046195Z CC src/unix/libuv_la-process.lo 2021-05-17T17:13:07.9329833Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-17T17:13:08.5763012Z CC src/unix/libuv_la-signal.lo 2021-05-17T17:13:09.6502408Z CC src/unix/libuv_la-stream.lo 2021-05-17T17:13:10.8980939Z CC src/unix/libuv_la-tcp.lo 2021-05-17T17:13:11.7059753Z CC src/unix/libuv_la-thread.lo 2021-05-17T17:13:12.6040923Z CC src/unix/libuv_la-tty.lo 2021-05-17T17:13:13.4148251Z CC src/unix/libuv_la-udp.lo 2021-05-17T17:13:14.6999206Z CC src/unix/libuv_la-linux-core.lo 2021-05-17T17:13:15.9368758Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-17T17:13:16.9957646Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-17T17:13:17.5955760Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-17T17:13:18.2428039Z CC src/unix/libuv_la-proctitle.lo 2021-05-17T17:13:18.8993008Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-17T17:13:19.5381572Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-17T17:13:20.1897854Z CCLD libuv.la 2021-05-17T17:13:20.4322737Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-17T17:13:20.4700645Z make[1]: Leaving directory '/tmp/RtmpJLtPuj/R.INSTALL794d60df4cd9/fs/src/libuv-1.38.1' 2021-05-17T17:13:20.4720582Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:20.5840323Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-17T17:13:20.5873278Z ** R 2021-05-17T17:13:20.5988847Z ** inst 2021-05-17T17:13:20.6001232Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:21.7254614Z ** help 2021-05-17T17:13:21.8025034Z *** installing help indices 2021-05-17T17:13:21.8592482Z ** building package indices 2021-05-17T17:13:22.1303166Z ** installing vignettes 2021-05-17T17:13:22.1425957Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:22.4182770Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:22.4405347Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:22.7134103Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:22.7147062Z * DONE (fs) 2021-05-17T17:13:22.9858196Z * installing *source* package ‘clipr’ ... 2021-05-17T17:13:22.9874596Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:22.9875855Z ** using staged installation 2021-05-17T17:13:23.0105266Z ** R 2021-05-17T17:13:23.0152800Z ** inst 2021-05-17T17:13:23.0163494Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:23.4134639Z ** help 2021-05-17T17:13:23.4379832Z *** installing help indices 2021-05-17T17:13:23.4622654Z ** building package indices 2021-05-17T17:13:23.7131964Z ** installing vignettes 2021-05-17T17:13:23.7147770Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:23.9271006Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:24.1280780Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:24.1287452Z * DONE (clipr) 2021-05-17T17:13:24.9486481Z * installing *source* package ‘git2r’ ... 2021-05-17T17:13:24.9760182Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:24.9761662Z ** using staged installation 2021-05-17T17:13:25.1914849Z checking build system type... x86_64-unknown-linux-gnu 2021-05-17T17:13:25.1916639Z checking host system type... x86_64-unknown-linux-gnu 2021-05-17T17:13:25.1924717Z checking for gcc... gcc 2021-05-17T17:13:25.2608170Z checking whether the C compiler works... yes 2021-05-17T17:13:25.2610561Z checking for C compiler default output file name... a.out 2021-05-17T17:13:25.3042335Z checking for suffix of executables... 2021-05-17T17:13:25.3519396Z checking whether we are cross compiling... no 2021-05-17T17:13:25.3819304Z checking for suffix of object files... o 2021-05-17T17:13:25.4069079Z checking whether we are using the GNU C compiler... yes 2021-05-17T17:13:25.4339023Z checking whether gcc accepts -g... yes 2021-05-17T17:13:25.4776111Z checking for gcc option to accept ISO C89... none needed 2021-05-17T17:13:25.4784358Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T17:13:25.4801674Z checking pkg-config is at least version 0.9.0... yes 2021-05-17T17:13:25.4939015Z Found pkg-config cflags and libs! 2021-05-17T17:13:25.6117141Z checking whether the libgit2 version will work in git2r... yes 2021-05-17T17:13:25.7687975Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-17T17:13:25.9328722Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-17T17:13:26.0778151Z checking whether the libgit2 function git_error_last is available... yes 2021-05-17T17:13:26.2013339Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-17T17:13:26.2016402Z ----- Results of the git2r package configure ----- 2021-05-17T17:13:26.2017727Z 2021-05-17T17:13:26.2019947Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-17T17:13:26.2021901Z PKG_LIBS: -lgit2 2021-05-17T17:13:26.2022802Z 2021-05-17T17:13:26.2024475Z -------------------------------------------------- 2021-05-17T17:13:26.2273870Z configure: creating ./config.status 2021-05-17T17:13:26.3129391Z config.status: creating src/Makevars 2021-05-17T17:13:26.3764441Z ** libs 2021-05-17T17:13:26.3833222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-17T17:13:26.4616537Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-17T17:13:26.5290656Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-17T17:13:26.7278240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-17T17:13:26.8410922Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-17T17:13:26.9898055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-17T17:13:27.2531543Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-17T17:13:27.3676673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-17T17:13:27.4730415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-17T17:13:27.6478445Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-17T17:13:27.8439483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-17T17:13:27.9530572Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-17T17:13:28.2455549Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-17T17:13:28.3238676Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-17T17:13:28.4250736Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-17T17:13:28.5227110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-17T17:13:28.6173110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-17T17:13:28.8217946Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-17T17:13:28.9718465Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-17T17:13:29.0676613Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-17T17:13:29.2696909Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-17T17:13:29.3440093Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-17T17:13:29.4435489Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-17T17:13:29.5527556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-17T17:13:29.6578456Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-17T17:13:29.8601372Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-17T17:13:30.0528672Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-17T17:13:30.1544432Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-17T17:13:30.2458342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-17T17:13:30.4472149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-17T17:13:30.5458034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-17T17:13:30.6868130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-17T17:13:30.8817563Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-17T17:13:31.0302550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-17T17:13:31.1091336Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-17T17:13:31.2403746Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:31.2863033Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-17T17:13:31.2884419Z ** R 2021-05-17T17:13:31.3104787Z ** inst 2021-05-17T17:13:31.3115234Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:32.3955741Z ** help 2021-05-17T17:13:32.6881289Z *** installing help indices 2021-05-17T17:13:32.8983406Z ** building package indices 2021-05-17T17:13:33.2880699Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:33.5223640Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:33.5455048Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:33.7875779Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:33.7901748Z * DONE (git2r) 2021-05-17T17:13:34.0714104Z * installing *source* package ‘askpass’ ... 2021-05-17T17:13:34.0726016Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:34.0727089Z ** using staged installation 2021-05-17T17:13:34.0902435Z ** libs 2021-05-17T17:13:34.0954775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-17T17:13:34.1584232Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:34.1841604Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-17T17:13:34.1856741Z ** R 2021-05-17T17:13:34.1893100Z ** inst 2021-05-17T17:13:34.1901959Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:34.4885207Z ** help 2021-05-17T17:13:34.5079323Z *** installing help indices 2021-05-17T17:13:34.5243969Z ** building package indices 2021-05-17T17:13:34.7435062Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:34.9597500Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:34.9806784Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:35.1979469Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:35.1985278Z * DONE (askpass) 2021-05-17T17:13:35.6070132Z * installing *source* package ‘cli’ ... 2021-05-17T17:13:35.6137416Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:35.6141102Z ** using staged installation 2021-05-17T17:13:35.6349981Z ** R 2021-05-17T17:13:35.6656344Z ** inst 2021-05-17T17:13:35.6671515Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:38.5427173Z ** help 2021-05-17T17:13:38.7839458Z *** installing help indices 2021-05-17T17:13:38.9307006Z *** copying figures 2021-05-17T17:13:38.9307686Z ** building package indices 2021-05-17T17:13:39.2729745Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:39.5381468Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:39.8534888Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:39.8566198Z * DONE (cli) 2021-05-17T17:13:40.2380782Z * installing *source* package ‘purrr’ ... 2021-05-17T17:13:40.2439345Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:40.2440191Z ** using staged installation 2021-05-17T17:13:40.2608299Z ** libs 2021-05-17T17:13:40.2667605Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-17T17:13:40.3119243Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T17:13:40.4206881Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T17:13:40.5237478Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-17T17:13:40.6604384Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:13:40.7162846Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-17T17:13:40.8642087Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-17T17:13:41.0383472Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-17T17:13:41.1437988Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:13:41.2076381Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:41.2372245Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-17T17:13:41.2376995Z ** R 2021-05-17T17:13:41.2575417Z ** inst 2021-05-17T17:13:41.2585973Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:42.8122859Z ** help 2021-05-17T17:13:42.8399286Z *** installing help indices 2021-05-17T17:13:42.9547280Z *** copying figures 2021-05-17T17:13:42.9553207Z ** building package indices 2021-05-17T17:13:43.2666692Z ** installing vignettes 2021-05-17T17:13:43.2756578Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:43.5030445Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:43.5249267Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:43.8031019Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:43.8045601Z * DONE (purrr) 2021-05-17T17:13:44.1411557Z * installing *source* package ‘lifecycle’ ... 2021-05-17T17:13:44.1442836Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:44.1444038Z ** using staged installation 2021-05-17T17:13:44.1610828Z ** R 2021-05-17T17:13:44.1664627Z ** inst 2021-05-17T17:13:44.1677933Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:44.6455302Z ** help 2021-05-17T17:13:44.6832862Z *** installing help indices 2021-05-17T17:13:44.7122165Z *** copying figures 2021-05-17T17:13:44.7127282Z ** building package indices 2021-05-17T17:13:44.9684344Z ** installing vignettes 2021-05-17T17:13:44.9693682Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:45.1956050Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:45.4277854Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:45.4286155Z * DONE (lifecycle) 2021-05-17T17:13:45.6713434Z * installing *source* package ‘cachem’ ... 2021-05-17T17:13:45.6726964Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:45.6728372Z ** using staged installation 2021-05-17T17:13:45.6876946Z ** libs 2021-05-17T17:13:45.6946813Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-17T17:13:45.7545495Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:13:45.8080324Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:45.8334192Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-17T17:13:45.8350008Z ** R 2021-05-17T17:13:45.8491220Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:46.4733333Z ** help 2021-05-17T17:13:46.5012338Z *** installing help indices 2021-05-17T17:13:46.5241901Z ** building package indices 2021-05-17T17:13:46.7665392Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:47.0164310Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:47.0396542Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:47.2764255Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:47.2772574Z * DONE (cachem) 2021-05-17T17:13:47.7869994Z * installing *source* package ‘openssl’ ... 2021-05-17T17:13:47.8011911Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:47.8014112Z ** using staged installation 2021-05-17T17:13:47.8197167Z Found pkg-config cflags and libs! 2021-05-17T17:13:47.9186450Z Using PKG_CFLAGS= 2021-05-17T17:13:48.2370574Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-17T17:13:48.2546591Z ** libs 2021-05-17T17:13:48.2611176Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T17:13:48.2640850Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T17:13:48.3601295Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:13:48.4581930Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-17T17:13:48.5791720Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-17T17:13:48.7835013Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-17T17:13:48.8591230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-17T17:13:48.9713270Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-17T17:13:49.1127326Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-17T17:13:49.1797501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T17:13:49.2999777Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-17T17:13:49.3769504Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-17T17:13:49.5148084Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-17T17:13:49.6645892Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-17T17:13:49.7694956Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-17T17:13:50.0107612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-17T17:13:50.0762471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-17T17:13:50.1280964Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-17T17:13:50.2845742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-17T17:13:50.4545079Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-17T17:13:50.6158972Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-17T17:13:50.6712328Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-17T17:13:50.7879609Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-17T17:13:50.9281567Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T17:13:51.1188157Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-17T17:13:51.2641309Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-17T17:13:51.4142818Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-17T17:13:51.5637509Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-17T17:13:51.6494703Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-17T17:13:51.8575659Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T17:13:51.8641015Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:13:51.9342432Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-17T17:13:51.9362002Z ** R 2021-05-17T17:13:51.9534418Z ** inst 2021-05-17T17:13:51.9589089Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:53.0241651Z ** help 2021-05-17T17:13:53.0853663Z *** installing help indices 2021-05-17T17:13:53.1328174Z ** building package indices 2021-05-17T17:13:53.3891075Z ** installing vignettes 2021-05-17T17:13:53.4056492Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:53.6352178Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:13:53.6628028Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:53.9040263Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:53.9054780Z * DONE (openssl) 2021-05-17T17:13:54.1811606Z * installing *source* package ‘memoise’ ... 2021-05-17T17:13:54.1833812Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:54.1835828Z ** using staged installation 2021-05-17T17:13:54.2063214Z ** R 2021-05-17T17:13:54.2181571Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:54.6810957Z ** help 2021-05-17T17:13:54.7074567Z *** installing help indices 2021-05-17T17:13:54.7376809Z ** building package indices 2021-05-17T17:13:54.9670691Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:55.1953563Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:55.4485062Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:55.4491907Z * DONE (memoise) 2021-05-17T17:13:55.8202313Z * installing *source* package ‘httr’ ... 2021-05-17T17:13:55.8258363Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-17T17:13:55.8259170Z ** using staged installation 2021-05-17T17:13:55.8437529Z ** R 2021-05-17T17:13:55.8634261Z ** demo 2021-05-17T17:13:55.8647156Z ** inst 2021-05-17T17:13:55.8664129Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:13:58.7299517Z ** help 2021-05-17T17:13:58.9174027Z *** installing help indices 2021-05-17T17:13:59.0363736Z ** building package indices 2021-05-17T17:13:59.3655077Z ** installing vignettes 2021-05-17T17:13:59.3731705Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:13:59.5809526Z ** testing if installed package can be loaded from final location 2021-05-17T17:13:59.8487441Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:13:59.8536868Z * DONE (httr) 2021-05-17T17:14:00.1247353Z * installing *source* package ‘credentials’ ... 2021-05-17T17:14:00.1271203Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:00.1274746Z ** using staged installation 2021-05-17T17:14:00.1432959Z ** R 2021-05-17T17:14:00.1485330Z ** inst 2021-05-17T17:14:00.1500479Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:00.6486942Z ** help 2021-05-17T17:14:00.6731936Z *** installing help indices 2021-05-17T17:14:00.6996030Z ** building package indices 2021-05-17T17:14:00.9285687Z ** installing vignettes 2021-05-17T17:14:00.9349980Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:01.2541786Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:01.5283168Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:01.5291239Z * DONE (credentials) 2021-05-17T17:14:01.8040607Z * installing *source* package ‘gh’ ... 2021-05-17T17:14:01.8061757Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:01.8062903Z ** using staged installation 2021-05-17T17:14:01.8232080Z ** R 2021-05-17T17:14:01.8324401Z ** inst 2021-05-17T17:14:01.8334583Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:02.9951872Z ** help 2021-05-17T17:14:03.0282232Z *** installing help indices 2021-05-17T17:14:03.0619107Z ** building package indices 2021-05-17T17:14:03.2907680Z ** installing vignettes 2021-05-17T17:14:03.2980415Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:03.8177966Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:03.8995718Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:03.9008928Z * DONE (gh) 2021-05-17T17:14:04.1987380Z * installing *source* package ‘gert’ ... 2021-05-17T17:14:04.2017768Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:04.2018916Z ** using staged installation 2021-05-17T17:14:04.2123893Z Found pkg-config cflags and libs! 2021-05-17T17:14:04.3157409Z Using PKG_CFLAGS= 2021-05-17T17:14:04.3159185Z Using PKG_LIBS=-lgit2 2021-05-17T17:14:04.3622079Z Configuration OK! 2021-05-17T17:14:04.3807525Z ** libs 2021-05-17T17:14:04.3872475Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-17T17:14:04.3902804Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-17T17:14:04.6364402Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-17T17:14:04.8947766Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-17T17:14:05.1691724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-17T17:14:05.2789086Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-17T17:14:05.3636230Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-17T17:14:05.5453138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:14:05.6215036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-17T17:14:05.7393508Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-17T17:14:05.8700710Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-17T17:14:05.9685499Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-17T17:14:06.1031110Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-17T17:14:06.1996604Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:14:06.3504390Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:14:06.4391974Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:06.4810925Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-17T17:14:06.4811675Z ** R 2021-05-17T17:14:06.4885050Z ** inst 2021-05-17T17:14:06.4896245Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:07.3771201Z ** help 2021-05-17T17:14:07.4498899Z *** installing help indices 2021-05-17T17:14:07.5011969Z ** building package indices 2021-05-17T17:14:07.7842083Z ** installing vignettes 2021-05-17T17:14:07.7946237Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:08.0531183Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:08.0739087Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:08.3650285Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:08.3652968Z * DONE (gert) 2021-05-17T17:14:08.8238480Z * installing *source* package ‘usethis’ ... 2021-05-17T17:14:08.8326700Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:08.8328022Z ** using staged installation 2021-05-17T17:14:08.8597758Z ** R 2021-05-17T17:14:08.8985091Z ** inst 2021-05-17T17:14:08.9023326Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:12.0050971Z ** help 2021-05-17T17:14:12.2473976Z *** installing help indices 2021-05-17T17:14:12.4142359Z *** copying figures 2021-05-17T17:14:12.4148227Z ** building package indices 2021-05-17T17:14:12.7675986Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:13.1435180Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:13.5495788Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:13.5528757Z * DONE (usethis) 2021-05-17T17:14:13.5660118Z 2021-05-17T17:14:13.5661386Z The downloaded source packages are in 2021-05-17T17:14:13.5664218Z ‘/tmp/RtmpH6ypYH/downloaded_packages’ 2021-05-17T17:14:13.5678273Z Running `R CMD build`... 2021-05-17T17:14:16.0567313Z * checking for file ‘/tmp/RtmpH6ypYH/remotes73124c2a4f3c/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-17T17:14:16.0568904Z * preparing ‘tic’: 2021-05-17T17:14:16.0572748Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:14:16.0573624Z * installing the package to process help pages 2021-05-17T17:14:16.0574793Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:14:16.0575687Z * checking for empty or unneeded directories 2021-05-17T17:14:16.0576587Z Removed empty directory ‘tic/.circleci’ 2021-05-17T17:14:16.0577470Z Removed empty directory ‘tic/pkgdown’ 2021-05-17T17:14:16.0578238Z * building ‘tic_0.10.0.tar.gz’ 2021-05-17T17:14:16.0580548Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:14:16.0582478Z (as ‘lib’ is unspecified) 2021-05-17T17:14:16.4421931Z * installing *source* package ‘tic’ ... 2021-05-17T17:14:16.4452219Z ** using staged installation 2021-05-17T17:14:16.4723214Z ** R 2021-05-17T17:14:16.4943305Z ** inst 2021-05-17T17:14:16.4979658Z ** preparing package for lazy loading 2021-05-17T17:14:16.9410913Z ** help 2021-05-17T17:14:17.1252899Z *** installing help indices 2021-05-17T17:14:17.2491897Z *** copying figures 2021-05-17T17:14:17.2497663Z ** building package indices 2021-05-17T17:14:17.5594472Z ** installing vignettes 2021-05-17T17:14:17.5652698Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:17.8646961Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:18.2519146Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:18.2555447Z * DONE (tic) 2021-05-17T17:14:18.2700000Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:14:18.9761613Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-17T17:14:20.6617413Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-17T17:14:20.6618501Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-17T17:14:20.6619361Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-17T17:14:20.6620232Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-17T17:14:20.6621120Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-17T17:14:20.6621982Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-17T17:14:20.6622838Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-17T17:14:20.6623704Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-17T17:14:20.6625678Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-17T17:14:20.6626541Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-17T17:14:20.6627375Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-17T17:14:20.6628213Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-17T17:14:20.6629110Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-17T17:14:20.6629976Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-17T17:14:20.6630834Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-17T17:14:20.6631744Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-17T17:14:20.6632600Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-17T17:14:20.6633447Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-17T17:14:20.6634281Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-17T17:14:20.6635092Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-17T17:14:20.6635917Z xfun (NA -> 0.23 ) [CRAN] 2021-05-17T17:14:20.6636765Z markdown (NA -> 1.1 ) [CRAN] 2021-05-17T17:14:20.6637609Z highr (NA -> 0.9 ) [CRAN] 2021-05-17T17:14:20.6638463Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-17T17:14:20.6639303Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-17T17:14:20.6640152Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-17T17:14:20.6640990Z knitr (NA -> 1.33 ) [CRAN] 2021-05-17T17:14:20.6641839Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-17T17:14:20.6642755Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-17T17:14:20.6643959Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-17T17:14:20.6644842Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-17T17:14:20.6645776Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-17T17:14:20.6646664Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-17T17:14:20.6647551Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-17T17:14:20.6648430Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-17T17:14:20.6649295Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-17T17:14:20.6650414Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-17T17:14:20.6651370Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-17T17:14:20.6658098Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-17T17:14:20.6664493Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:14:20.6665370Z (as ‘lib’ is unspecified) 2021-05-17T17:14:36.7019876Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-17T17:14:37.1182363Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-17T17:14:37.2520768Z ================================================== 2021-05-17T17:14:37.2521443Z downloaded 232 KB 2021-05-17T17:14:37.2522914Z 2021-05-17T17:14:37.2559870Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-17T17:14:38.3280655Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-17T17:14:38.3285638Z ================================================== 2021-05-17T17:14:38.3286624Z downloaded 766 KB 2021-05-17T17:14:38.3286977Z 2021-05-17T17:14:38.3288774Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-17T17:14:38.3290388Z Content type 'application/x-tar' length 6108 bytes 2021-05-17T17:14:38.3291043Z ================================================== 2021-05-17T17:14:38.3291545Z downloaded 6108 bytes 2021-05-17T17:14:38.3291870Z 2021-05-17T17:14:38.3293247Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-17T17:14:38.5300862Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-17T17:14:38.5733236Z ================================================== 2021-05-17T17:14:38.5733918Z downloaded 1.1 MB 2021-05-17T17:14:38.5734227Z 2021-05-17T17:14:38.5789709Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-17T17:14:38.9575204Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-17T17:14:38.9891207Z ================================================== 2021-05-17T17:14:38.9891822Z downloaded 673 KB 2021-05-17T17:14:38.9892167Z 2021-05-17T17:14:38.9936668Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-17T17:14:39.3741657Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-17T17:14:39.3744076Z ================================================== 2021-05-17T17:14:39.3744616Z downloaded 13 KB 2021-05-17T17:14:39.3744930Z 2021-05-17T17:14:39.3792807Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-17T17:14:39.7571950Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-17T17:14:39.7776471Z ================================================== 2021-05-17T17:14:39.7777118Z downloaded 264 KB 2021-05-17T17:14:39.7777425Z 2021-05-17T17:14:39.7817215Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-17T17:14:40.1593567Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-17T17:14:40.1915983Z ================================================== 2021-05-17T17:14:40.1916653Z downloaded 464 KB 2021-05-17T17:14:40.1916972Z 2021-05-17T17:14:40.1957909Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-17T17:14:40.5770274Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-17T17:14:40.5774686Z ================================================== 2021-05-17T17:14:40.5775738Z downloaded 25 KB 2021-05-17T17:14:40.5776354Z 2021-05-17T17:14:40.5829288Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-17T17:14:40.9634250Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-17T17:14:40.9715014Z ================================================== 2021-05-17T17:14:40.9715789Z downloaded 117 KB 2021-05-17T17:14:40.9716116Z 2021-05-17T17:14:40.9757097Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-17T17:14:41.3575490Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-17T17:14:41.3726846Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-17T17:14:42.5370512Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-17T17:14:42.5371263Z ================================================== 2021-05-17T17:14:42.5371752Z downloaded 23 KB 2021-05-17T17:14:42.5372061Z 2021-05-17T17:14:42.5416193Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-17T17:14:42.9246275Z Content type 'binary/octet-stream' length 8130 bytes 2021-05-17T17:14:42.9251147Z ================================================== 2021-05-17T17:14:42.9252072Z downloaded 8130 bytes 2021-05-17T17:14:42.9297769Z 2021-05-17T17:14:42.9299639Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-17T17:14:43.2965170Z Content type 'binary/octet-stream' length 164442 bytes (160 KB) 2021-05-17T17:14:43.3133075Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-17T17:14:44.4772431Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-17T17:14:44.5142725Z ================================================== 2021-05-17T17:14:44.5143792Z downloaded 266 KB 2021-05-17T17:14:44.5144339Z 2021-05-17T17:14:44.5184246Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-17T17:14:44.8945235Z Content type 'binary/octet-stream' length 111996 bytes (109 KB) 2021-05-17T17:14:44.9028402Z ================================================== 2021-05-17T17:14:44.9029023Z downloaded 109 KB 2021-05-17T17:14:44.9029327Z 2021-05-17T17:14:44.9069625Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-17T17:14:45.2980362Z Content type 'application/x-tar' length 81636 bytes (79 KB) 2021-05-17T17:14:45.3185785Z 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2021-05-17T17:14:46.3998942Z Content type 'application/x-gzip' length 7575370 bytes (7.2 MB) 2021-05-17T17:14:46.7407151Z ================================================== 2021-05-17T17:14:46.7407795Z downloaded 7.2 MB 2021-05-17T17:14:46.7408117Z 2021-05-17T17:14:46.7437189Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-17T17:14:47.1237949Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-17T17:14:47.1712183Z ================================================== 2021-05-17T17:14:47.1712813Z downloaded 2.8 MB 2021-05-17T17:14:47.1713136Z 2021-05-17T17:14:47.1761029Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-17T17:14:47.5819476Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-17T17:14:47.6153635Z ================================================== 2021-05-17T17:14:47.6154285Z downloaded 869 KB 2021-05-17T17:14:47.6154668Z 2021-05-17T17:14:47.6203304Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-05-17T17:14:48.0019812Z Content type 'application/x-tar' length 134376 bytes (131 KB) 2021-05-17T17:14:48.0102754Z ================================================== 2021-05-17T17:14:48.0103450Z downloaded 131 KB 2021-05-17T17:14:48.0103793Z 2021-05-17T17:14:48.0146308Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-05-17T17:14:48.3949969Z Content type 'application/x-tar' length 83765 bytes (81 KB) 2021-05-17T17:14:48.4022639Z ================================================== 2021-05-17T17:14:48.4023262Z downloaded 81 KB 2021-05-17T17:14:48.4023582Z 2021-05-17T17:14:48.4065673Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-17T17:14:48.7858501Z Content type 'application/x-tar' length 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-05-17T17:14:49.9320660Z Content type 'binary/octet-stream' length 30622 bytes (29 KB) 2021-05-17T17:14:49.9325603Z ================================================== 2021-05-17T17:14:49.9326478Z downloaded 29 KB 2021-05-17T17:14:49.9327027Z 2021-05-17T17:14:49.9381121Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/testthat_3.0.2.tar.gz' 2021-05-17T17:14:50.3175088Z Content type 'binary/octet-stream' length 678280 bytes (662 KB) 2021-05-17T17:14:50.3492592Z ================================================== 2021-05-17T17:14:50.3493238Z downloaded 662 KB 2021-05-17T17:14:50.3493562Z 2021-05-17T17:14:50.3539046Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-17T17:14:50.7315024Z Content type 'binary/octet-stream' length 40913 bytes (39 KB) 2021-05-17T17:14:50.7315836Z 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'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-17T17:14:51.9086330Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-17T17:14:51.9309696Z ================================================== 2021-05-17T17:14:51.9310363Z downloaded 361 KB 2021-05-17T17:14:51.9310717Z 2021-05-17T17:14:52.3123332Z * installing *source* package ‘utf8’ ... 2021-05-17T17:14:52.3196723Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:52.3197573Z ** using staged installation 2021-05-17T17:14:52.3353853Z ** libs 2021-05-17T17:14:52.3415724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-17T17:14:52.4204915Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-17T17:14:52.5834535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-17T17:14:52.6558694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:14:52.7161989Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-17T17:14:52.7975053Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-17T17:14:53.0137320Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-17T17:14:53.0849012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-17T17:14:53.2395895Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-17T17:14:53.3352690Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-17T17:14:53.4410426Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-17T17:14:53.5284041Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-17T17:14:53.6016706Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-17T17:14:53.6784590Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-17T17:14:53.7417247Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-17T17:14:53.8095599Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-17T17:14:53.8919389Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-17T17:14:53.9636028Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-17T17:14:54.0105006Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-17T17:14:54.0862056Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-17T17:14:54.1380505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-17T17:14:54.3704899Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-17T17:14:54.7155772Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-17T17:14:54.9133377Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-17T17:14:55.0138957Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-17T17:14:55.0889528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-17T17:14:55.1757379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-17T17:14:55.2587995Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-17T17:14:55.2671267Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:14:55.3092291Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-17T17:14:55.3106849Z ** R 2021-05-17T17:14:55.3212826Z ** inst 2021-05-17T17:14:55.3222927Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:55.8587614Z ** help 2021-05-17T17:14:55.8911114Z *** installing help indices 2021-05-17T17:14:55.9185207Z ** building package indices 2021-05-17T17:14:56.1459178Z ** installing vignettes 2021-05-17T17:14:56.1524162Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:56.3666023Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:14:56.3873472Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:56.5973775Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:56.5982976Z * DONE (utf8) 2021-05-17T17:14:56.8490216Z * installing *source* package ‘pkgconfig’ ... 2021-05-17T17:14:56.8517222Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:56.8518381Z ** using staged installation 2021-05-17T17:14:56.8666936Z ** R 2021-05-17T17:14:56.8696483Z ** inst 2021-05-17T17:14:56.8705158Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:14:57.1385339Z ** help 2021-05-17T17:14:57.1724230Z *** installing help indices 2021-05-17T17:14:57.1916901Z ** building package indices 2021-05-17T17:14:57.4403807Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:14:57.6423114Z ** testing if installed package can be loaded from final location 2021-05-17T17:14:57.8668436Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:14:57.8669885Z * DONE (pkgconfig) 2021-05-17T17:14:58.2021693Z * installing *source* package ‘fansi’ ... 2021-05-17T17:14:58.2071283Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-17T17:14:58.2073485Z ** using staged installation 2021-05-17T17:14:58.2242866Z ** libs 2021-05-17T17:14:58.2329920Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-17T17:14:58.2843343Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-17T17:14:58.3580364Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:14:58.4103618Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-17T17:14:58.4951483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-17T17:14:59.0277240Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-17T17:14:59.0731921Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-17T17:14:59.4876812Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-17T17:14:59.6479665Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-17T17:14:59.7028098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-17T17:14:59.8534041Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-17T17:15:00.1660567Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-17T17:15:00.2840004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-17T17:15:00.3481862Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T17:15:00.4159573Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:15:00.6095357Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-17T17:15:00.9747203Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:01.0132316Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-17T17:15:01.0133655Z ** R 2021-05-17T17:15:01.0229827Z ** inst 2021-05-17T17:15:01.0240548Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:01.7104536Z ** help 2021-05-17T17:15:01.8104831Z *** installing help indices 2021-05-17T17:15:01.8686392Z ** building package indices 2021-05-17T17:15:02.1374844Z ** installing vignettes 2021-05-17T17:15:02.1446047Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:02.3618722Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:02.3848783Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:02.5928139Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:02.5940147Z * DONE (fansi) 2021-05-17T17:15:03.0848753Z * installing *source* package ‘diffobj’ ... 2021-05-17T17:15:03.0963915Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:03.0964760Z ** using staged installation 2021-05-17T17:15:03.1135564Z ** libs 2021-05-17T17:15:03.1187518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-17T17:15:03.3546513Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-17T17:15:03.4280356Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:03.4856679Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:03.5132393Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-17T17:15:03.5133711Z ** R 2021-05-17T17:15:03.5566114Z ** inst 2021-05-17T17:15:03.5583785Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:10.6775826Z ** help 2021-05-17T17:15:10.8983116Z *** installing help indices 2021-05-17T17:15:11.0608914Z ** building package indices 2021-05-17T17:15:11.3931113Z ** installing vignettes 2021-05-17T17:15:11.3996321Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:11.7734837Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:11.7944105Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:12.2708922Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:12.2807070Z * DONE (diffobj) 2021-05-17T17:15:12.6223722Z * installing *source* package ‘ps’ ... 2021-05-17T17:15:12.6266703Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:12.6268140Z ** using staged installation 2021-05-17T17:15:12.8743209Z ** libs 2021-05-17T17:15:12.8809522Z gcc -g -O2 -Wall px.c -o px 2021-05-17T17:15:13.0391271Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:13.1213318Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-17T17:15:13.1983737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-17T17:15:13.2774403Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-17T17:15:13.4677276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-17T17:15:13.5299419Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-17T17:15:13.8841807Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-17T17:15:14.0993079Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-17T17:15:14.2199487Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-17T17:15:15.3391609Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-17T17:15:15.3394011Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-17T17:15:15.3404687Z ** R 2021-05-17T17:15:15.3407368Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:15.3409098Z ** inst 2021-05-17T17:15:15.3410595Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:16.0881741Z ** help 2021-05-17T17:15:16.2471958Z *** installing help indices 2021-05-17T17:15:16.3500865Z ** building package indices 2021-05-17T17:15:16.6621420Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:16.8828830Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:16.9041452Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:17.1357982Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:17.1371368Z * DONE (ps) 2021-05-17T17:15:17.3848802Z * installing *source* package ‘praise’ ... 2021-05-17T17:15:17.3859804Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:17.3861135Z ** using staged installation 2021-05-17T17:15:17.3980605Z ** R 2021-05-17T17:15:17.4024591Z ** inst 2021-05-17T17:15:17.4046336Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:17.6759827Z ** help 2021-05-17T17:15:17.6914939Z *** installing help indices 2021-05-17T17:15:17.7161020Z ** building package indices 2021-05-17T17:15:17.9385406Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:18.1385306Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:18.3557794Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:18.3562982Z * DONE (praise) 2021-05-17T17:15:18.7525509Z * installing *source* package ‘pkgload’ ... 2021-05-17T17:15:18.7580396Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:18.7582410Z ** using staged installation 2021-05-17T17:15:18.7748068Z ** R 2021-05-17T17:15:18.7879145Z ** inst 2021-05-17T17:15:18.7887781Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:19.7970260Z ** help 2021-05-17T17:15:19.8606267Z *** installing help indices 2021-05-17T17:15:19.9110873Z ** building package indices 2021-05-17T17:15:20.1630149Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:20.6921154Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:21.2705254Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:21.2720708Z * DONE (pkgload) 2021-05-17T17:15:21.5504188Z * installing *source* package ‘evaluate’ ... 2021-05-17T17:15:21.5524962Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:21.5529284Z ** using staged installation 2021-05-17T17:15:21.5682083Z ** R 2021-05-17T17:15:21.5741406Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:22.1371746Z ** help 2021-05-17T17:15:22.1768160Z *** installing help indices 2021-05-17T17:15:22.2150071Z ** building package indices 2021-05-17T17:15:22.4458713Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:22.6525430Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:22.8710687Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:22.8718849Z * DONE (evaluate) 2021-05-17T17:15:23.1267074Z * installing *source* package ‘ellipsis’ ... 2021-05-17T17:15:23.1279563Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:23.1282862Z ** using staged installation 2021-05-17T17:15:23.1449312Z ** libs 2021-05-17T17:15:23.1498880Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-17T17:15:23.2438055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:23.2996662Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:23.3253457Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-17T17:15:23.3268574Z ** R 2021-05-17T17:15:23.3309123Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:23.6531016Z ** help 2021-05-17T17:15:23.6805601Z *** installing help indices 2021-05-17T17:15:23.7032399Z ** building package indices 2021-05-17T17:15:23.9320099Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:24.1659533Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:24.1864522Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:24.4202781Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:24.4210233Z * DONE (ellipsis) 2021-05-17T17:15:24.7454577Z * installing *source* package ‘digest’ ... 2021-05-17T17:15:24.7491375Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:24.7493747Z ** using staged installation 2021-05-17T17:15:24.7625708Z ** libs 2021-05-17T17:15:24.7688124Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-17T17:15:24.9730719Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T17:15:25.3330603Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-17T17:15:25.9718297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-17T17:15:26.2363690Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-17T17:15:26.8628845Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-17T17:15:26.9652481Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-17T17:15:27.2157636Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-17T17:15:27.2841181Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:27.3134005Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-17T17:15:27.4790506Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-17T17:15:27.5545025Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-17T17:15:27.6411476Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-17T17:15:28.0104781Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-17T17:15:28.1492259Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-17T17:15:28.8036673Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-17T17:15:28.9376475Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-17T17:15:29.2267016Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:29.2867703Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-17T17:15:29.2890603Z ** R 2021-05-17T17:15:29.2956441Z ** demo 2021-05-17T17:15:29.2965044Z ** inst 2021-05-17T17:15:29.2985089Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:29.9459639Z ** help 2021-05-17T17:15:29.9881731Z *** installing help indices 2021-05-17T17:15:30.0175480Z ** building package indices 2021-05-17T17:15:30.2490381Z ** installing vignettes 2021-05-17T17:15:30.2583686Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:30.4831558Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:30.5071389Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:30.7422686Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:30.7434451Z * DONE (digest) 2021-05-17T17:15:30.9941936Z * installing *source* package ‘brio’ ... 2021-05-17T17:15:30.9957815Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:30.9958969Z ** using staged installation 2021-05-17T17:15:31.0157126Z ** libs 2021-05-17T17:15:31.0211106Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-17T17:15:31.0787982Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-17T17:15:31.1387698Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:31.1895775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-17T17:15:31.2559145Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-17T17:15:31.3275939Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-17T17:15:31.4202087Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-17T17:15:31.4750222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-17T17:15:31.5496404Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:31.5772670Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-17T17:15:31.5784287Z ** R 2021-05-17T17:15:31.5821734Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:31.8571694Z ** help 2021-05-17T17:15:31.8741840Z *** installing help indices 2021-05-17T17:15:31.8965231Z ** building package indices 2021-05-17T17:15:32.1271988Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:32.3337665Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:32.3569815Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:32.5557202Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:32.5562429Z * DONE (brio) 2021-05-17T17:15:32.8841600Z * installing *source* package ‘xml2’ ... 2021-05-17T17:15:32.8886731Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:32.8887540Z ** using staged installation 2021-05-17T17:15:32.9044223Z Found pkg-config cflags and libs! 2021-05-17T17:15:33.0069765Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-17T17:15:33.0071469Z Using PKG_LIBS=-lxml2 2021-05-17T17:15:33.1317907Z ** libs 2021-05-17T17:15:33.1377892Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-17T17:15:33.7646488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:33.8185934Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-17T17:15:34.4942695Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-17T17:15:35.0103813Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-17T17:15:35.8167838Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-17T17:15:37.9473763Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-17T17:15:38.5487153Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-17T17:15:39.2091996Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-17T17:15:39.7522745Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-17T17:15:40.2518091Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:40.3637631Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-17T17:15:40.3669259Z ** R 2021-05-17T17:15:40.3793154Z ** inst 2021-05-17T17:15:40.3806556Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:41.4212975Z ** help 2021-05-17T17:15:41.5291323Z *** installing help indices 2021-05-17T17:15:41.5858688Z ** building package indices 2021-05-17T17:15:41.8651348Z ** installing vignettes 2021-05-17T17:15:41.8745335Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:42.0994970Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:42.1257974Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:42.3889141Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:42.3904553Z * DONE (xml2) 2021-05-17T17:15:42.7173506Z * installing *source* package ‘xfun’ ... 2021-05-17T17:15:42.7215000Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:42.7219134Z ** using staged installation 2021-05-17T17:15:42.7396949Z ** libs 2021-05-17T17:15:42.7492366Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:15:42.8814301Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:15:42.9345876Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:15:42.9754449Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-17T17:15:42.9769562Z ** R 2021-05-17T17:15:42.9932447Z ** inst 2021-05-17T17:15:42.9945930Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:15:44.4993374Z ** help 2021-05-17T17:15:44.6681070Z *** installing help indices 2021-05-17T17:15:44.7856751Z ** building package indices 2021-05-17T17:15:45.1171178Z ** installing vignettes 2021-05-17T17:15:45.1222773Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:15:45.3422644Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:15:45.3628834Z ** testing if installed package can be loaded from final location 2021-05-17T17:15:45.6143184Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:15:45.6158910Z * DONE (xfun) 2021-05-17T17:15:48.4671300Z * installing *source* package ‘stringi’ ... 2021-05-17T17:15:48.6018231Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-17T17:15:48.6019068Z ** using staged installation 2021-05-17T17:15:48.7529513Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-17T17:15:48.7531136Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-17T17:15:48.9333416Z checking for endianness... little 2021-05-17T17:15:49.1209738Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-17T17:15:49.3273149Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-17T17:15:49.3278633Z checking for cat... /usr/bin/cat 2021-05-17T17:15:49.6248297Z checking for local ICUDT_DIR... icu69/data 2021-05-17T17:15:49.6249604Z checking for gcc... gcc 2021-05-17T17:15:49.6933290Z checking whether the C compiler works... yes 2021-05-17T17:15:49.6934781Z checking for C compiler default output file name... a.out 2021-05-17T17:15:49.7375065Z checking for suffix of executables... 2021-05-17T17:15:49.7908716Z checking whether we are cross compiling... no 2021-05-17T17:15:49.8212598Z checking for suffix of object files... o 2021-05-17T17:15:49.8522101Z checking whether we are using the GNU C compiler... yes 2021-05-17T17:15:49.8773144Z checking whether gcc accepts -g... yes 2021-05-17T17:15:49.9320025Z checking for gcc option to accept ISO C89... none needed 2021-05-17T17:15:49.9577726Z checking how to run the C preprocessor... gcc -E 2021-05-17T17:15:49.9849459Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-17T17:15:49.9868043Z checking for egrep... /usr/bin/grep -E 2021-05-17T17:15:50.1145613Z checking for ANSI C header files... yes 2021-05-17T17:15:50.1482209Z checking for sys/types.h... yes 2021-05-17T17:15:50.1979711Z checking for sys/stat.h... yes 2021-05-17T17:15:50.2382616Z checking for stdlib.h... yes 2021-05-17T17:15:50.2825142Z checking for string.h... yes 2021-05-17T17:15:50.3262353Z checking for memory.h... yes 2021-05-17T17:15:50.3691302Z checking for strings.h... yes 2021-05-17T17:15:50.4155297Z checking for inttypes.h... yes 2021-05-17T17:15:50.4614959Z checking for stdint.h... yes 2021-05-17T17:15:50.5088946Z checking for unistd.h... yes 2021-05-17T17:15:50.5593820Z checking elf.h usability... yes 2021-05-17T17:15:50.5726600Z checking elf.h presence... yes 2021-05-17T17:15:50.5727885Z checking for elf.h... yes 2021-05-17T17:15:50.6285956Z checking whether we are using the GNU C++ compiler... yes 2021-05-17T17:15:50.6558708Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-17T17:15:51.0165572Z checking whether the C++ compiler supports the long long type... yes 2021-05-17T17:15:51.0456092Z checking whether the compiler implements namespaces... yes 2021-05-17T17:15:51.2066447Z checking whether the compiler supports Standard Template Library... yes 2021-05-17T17:15:51.8300774Z checking whether std::map is available... yes 2021-05-17T17:15:51.8323614Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T17:15:51.8424227Z checking with pkg-config for the system ICU4C... 66.1 2021-05-17T17:15:51.8459534Z checking for ICU4C >= 55... yes 2021-05-17T17:15:51.8535712Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-17T17:15:52.1824517Z checking whether an ICU4C-based project can be built... yes 2021-05-17T17:15:52.2511759Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-17T17:15:52.5654797Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-17T17:15:53.3538195Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-17T17:15:54.0329190Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-17T17:15:54.0762592Z configure: creating ./config.status 2021-05-17T17:15:54.1719256Z config.status: creating src/Makevars 2021-05-17T17:15:54.1939564Z config.status: creating src/uconfig_local.h 2021-05-17T17:15:54.2133402Z config.status: creating src/install.libs.R 2021-05-17T17:15:54.2319106Z 2021-05-17T17:15:54.2320143Z *** stringi configure summary: 2021-05-17T17:15:54.2320866Z ICU_FOUND=1 2021-05-17T17:15:54.2321569Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-17T17:15:54.2322851Z STRINGI_CFLAGS= -fpic 2021-05-17T17:15:54.2323932Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-17T17:15:54.2324949Z STRINGI_CXXFLAGS= -fpic 2021-05-17T17:15:54.2325971Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-17T17:15:54.2327067Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-17T17:15:54.2327639Z 2021-05-17T17:15:54.2328287Z *** Compiler settings used: 2021-05-17T17:15:54.2328932Z CC=gcc 2021-05-17T17:15:54.2329677Z LD=g++ -std=gnu++14 2021-05-17T17:15:54.2330745Z CFLAGS=-g -O2 -fpic 2021-05-17T17:15:54.2331795Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-17T17:15:54.2332741Z CXX=g++ -std=gnu++11 2021-05-17T17:15:54.2333549Z CXXFLAGS=-g -O2 -fpic 2021-05-17T17:15:54.2334177Z LDFLAGS= 2021-05-17T17:15:54.2334721Z LIBS= 2021-05-17T17:15:54.2335100Z 2021-05-17T17:15:54.2739689Z ** libs 2021-05-17T17:15:54.2841999Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-17T17:15:55.0361516Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-17T17:15:55.7756072Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-17T17:15:56.5626499Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-17T17:15:57.4029738Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-17T17:15:57.9939312Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-17T17:15:59.0098015Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-17T17:15:59.6520583Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-17T17:16:00.3425359Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-17T17:16:00.9987623Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-17T17:16:01.8157860Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-17T17:16:02.5602301Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-17T17:16:03.8549534Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-17T17:16:04.2217351Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-17T17:16:04.9190133Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-17T17:16:06.0197216Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-17T17:16:07.8372030Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-17T17:16:08.6184940Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-17T17:16:09.3869163Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-17T17:16:10.0173036Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-17T17:16:10.6164470Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-17T17:16:11.6901004Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-17T17:16:12.4601154Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-17T17:16:13.1889006Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-17T17:16:14.0893689Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-17T17:16:15.0612461Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-17T17:16:15.7207953Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-17T17:16:16.4652334Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-17T17:16:17.2190963Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-17T17:16:18.2058594Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-17T17:16:19.1658424Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-17T17:16:20.3086503Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-17T17:16:21.2504675Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-17T17:16:22.0887196Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-17T17:16:23.0206849Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-17T17:16:24.3608382Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-17T17:16:24.5269677Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-17T17:16:25.3034387Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-17T17:16:26.0826975Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-17T17:16:27.0441947Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-17T17:16:27.9827744Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-17T17:16:29.0176428Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-17T17:16:30.0474249Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-17T17:16:30.9443119Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-17T17:16:31.8260745Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-17T17:16:32.4711447Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-17T17:16:33.2961276Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-17T17:16:34.1094017Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-17T17:16:34.9266087Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-17T17:16:35.5879741Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-17T17:16:36.2881259Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-17T17:16:37.1466968Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-17T17:16:38.0058722Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-17T17:16:38.9425541Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-17T17:16:39.8263914Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-17T17:16:40.6769669Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-17T17:16:41.4418216Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-17T17:16:41.4604368Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-17T17:16:42.4428488Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-17T17:16:43.1351269Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-17T17:16:43.8677479Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-17T17:16:44.7138913Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-17T17:16:45.5905072Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-17T17:16:46.6448550Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-17T17:16:47.4600103Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-17T17:16:48.3656614Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-17T17:16:49.1506611Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-17T17:16:50.9689928Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-17T17:16:51.6974347Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-17T17:16:52.3484557Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-17T17:16:53.2869287Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-17T17:16:53.9136425Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-17T17:16:54.6162885Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-17T17:16:55.5280233Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-17T17:16:56.3603203Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-17T17:16:57.2859688Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-17T17:16:58.0618495Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-17T17:16:58.8833531Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-17T17:16:59.6241590Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-17T17:17:00.3006677Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-17T17:17:01.3728891Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-17T17:17:01.6392205Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-17T17:17:02.2917108Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-17T17:17:03.8399719Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:04.0992922Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-17T17:17:04.1867717Z ** R 2021-05-17T17:17:04.2211019Z ** inst 2021-05-17T17:17:04.2219923Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:05.4344014Z ** help 2021-05-17T17:17:05.9624405Z *** installing help indices 2021-05-17T17:17:06.1928536Z ** building package indices 2021-05-17T17:17:06.6922386Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:06.9214037Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:06.9480371Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:07.1758646Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:07.1773902Z * DONE (stringi) 2021-05-17T17:17:08.2700024Z * installing *source* package ‘Rcpp’ ... 2021-05-17T17:17:08.3102400Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-17T17:17:08.3103863Z ** using staged installation 2021-05-17T17:17:08.3231695Z ** libs 2021-05-17T17:17:08.3299150Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-17T17:17:11.7990805Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-17T17:17:29.4335489Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-17T17:17:29.6759729Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-17T17:17:33.4618384Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-17T17:17:40.7330105Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-17T17:17:44.0751216Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:44.2938247Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-17T17:17:44.3078569Z ** R 2021-05-17T17:17:44.3233453Z ** inst 2021-05-17T17:17:44.3673160Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:46.3509513Z ** help 2021-05-17T17:17:46.4570189Z *** installing help indices 2021-05-17T17:17:46.5268405Z ** building package indices 2021-05-17T17:17:46.8182567Z ** installing vignettes 2021-05-17T17:17:46.8253538Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:47.8845302Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:47.8854058Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:47.8856517Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:47.8858360Z * DONE (Rcpp) 2021-05-17T17:17:47.8929668Z * installing *source* package ‘commonmark’ ... 2021-05-17T17:17:47.8973303Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-17T17:17:47.8975130Z ** using staged installation 2021-05-17T17:17:47.9107822Z ** libs 2021-05-17T17:17:47.9167062Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-17T17:17:47.9198526Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-17T17:17:47.9756968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:17:48.0214528Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-17T17:17:48.0947042Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-17T17:17:48.1503313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-17T17:17:48.5152673Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-17T17:17:48.6158635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-17T17:17:49.1330714Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-17T17:17:49.9677373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-17T17:17:51.9693480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-17T17:17:55.6220578Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-17T17:17:55.7873787Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-17T17:17:55.8417162Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-17T17:17:55.9604195Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-17T17:17:56.0605610Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-17T17:17:56.1749997Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-17T17:17:56.4174070Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-17T17:17:56.6411418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-17T17:17:56.7841370Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-17T17:17:56.8415152Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-17T17:17:56.9039021Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-17T17:17:57.0339270Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-17T17:17:57.0674276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-17T17:17:57.1390379Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-17T17:17:57.1882600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-17T17:17:57.2337904Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-17T17:17:57.2938922Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-17T17:17:57.3766266Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-17T17:17:57.4943161Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-17T17:17:57.5464344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-17T17:17:57.6373933Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-17T17:17:57.8574489Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-17T17:17:57.8946330Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-17T17:17:58.0561864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-17T17:17:58.1517546Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-17T17:17:58.4763214Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-17T17:17:58.5448422Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-17T17:17:58.5596115Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:17:58.6151130Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-17T17:17:58.6227196Z ** R 2021-05-17T17:17:58.6256677Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:17:58.8985148Z ** help 2021-05-17T17:17:58.9133788Z *** installing help indices 2021-05-17T17:17:58.9343862Z ** building package indices 2021-05-17T17:17:59.1603476Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:17:59.3742000Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:17:59.4059699Z ** testing if installed package can be loaded from final location 2021-05-17T17:17:59.6067767Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:17:59.6073110Z * DONE (commonmark) 2021-05-17T17:17:59.8997042Z * installing *source* package ‘brew’ ... 2021-05-17T17:17:59.9001574Z ** using staged installation 2021-05-17T17:17:59.9100829Z ** R 2021-05-17T17:17:59.9135554Z ** inst 2021-05-17T17:17:59.9164333Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:00.3157901Z ** help 2021-05-17T17:18:00.3316449Z *** installing help indices 2021-05-17T17:18:00.3582735Z ** building package indices 2021-05-17T17:18:00.5795389Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:00.7957892Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:01.0019136Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:01.0025912Z * DONE (brew) 2021-05-17T17:18:01.2753794Z * installing *source* package ‘sessioninfo’ ... 2021-05-17T17:18:01.2775693Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:01.2777150Z ** using staged installation 2021-05-17T17:18:01.2983758Z ** R 2021-05-17T17:18:01.3034170Z ** inst 2021-05-17T17:18:01.3041570Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:02.3901288Z ** help 2021-05-17T17:18:02.3909342Z *** installing help indices 2021-05-17T17:18:02.3910257Z ** building package indices 2021-05-17T17:18:02.3911221Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:02.3912311Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:02.6274197Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:02.6280962Z * DONE (sessioninfo) 2021-05-17T17:18:02.8844347Z * installing *source* package ‘prettyunits’ ... 2021-05-17T17:18:02.8862647Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:02.8865139Z ** using staged installation 2021-05-17T17:18:02.9002641Z ** R 2021-05-17T17:18:02.9047752Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:03.2974794Z ** help 2021-05-17T17:18:03.3314606Z *** installing help indices 2021-05-17T17:18:03.3559652Z ** building package indices 2021-05-17T17:18:03.5812466Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:03.7929453Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:04.0062159Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:04.0082857Z * DONE (prettyunits) 2021-05-17T17:18:04.6042971Z * installing *source* package ‘vctrs’ ... 2021-05-17T17:18:04.6207496Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:04.6208575Z ** using staged installation 2021-05-17T17:18:04.6410482Z ** libs 2021-05-17T17:18:04.6490177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-17T17:18:04.7834568Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-17T17:18:04.8883486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-17T17:18:04.9949312Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-17T17:18:05.2704208Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-17T17:18:05.4095151Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-17T17:18:05.5659872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-17T17:18:05.6434116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-17T17:18:05.7740350Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-17T17:18:05.8637793Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-17T17:18:06.0268454Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-17T17:18:06.2724424Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-17T17:18:06.4186138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T17:18:06.5156642Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-17T17:18:06.8010677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-17T17:18:06.8739217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-17T17:18:07.3413711Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-17T17:18:07.4466867Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-17T17:18:07.5901092Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-17T17:18:07.7286494Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-17T17:18:07.7996932Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T17:18:08.0666464Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:18:08.1411688Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-17T17:18:08.4979852Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-17T17:18:08.5898092Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-17T17:18:09.4400870Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-17T17:18:09.6304100Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-17T17:18:09.7224689Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-17T17:18:09.8124382Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-17T17:18:10.0263194Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-17T17:18:10.1516347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-17T17:18:10.3017447Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-17T17:18:10.8922219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-17T17:18:10.8932864Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-17T17:18:10.8935117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-17T17:18:11.0096448Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-17T17:18:11.1070469Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-17T17:18:11.2376273Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-17T17:18:11.7918449Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-17T17:18:12.2000115Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-17T17:18:12.5016288Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-17T17:18:12.7135611Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-17T17:18:13.0260422Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T17:18:13.1017028Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-17T17:18:13.3395358Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-17T17:18:13.5140803Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-17T17:18:13.6409791Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-17T17:18:14.0451644Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-17T17:18:14.2332971Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-17T17:18:14.3920036Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-17T17:18:14.5163420Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-17T17:18:14.6002273Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-17T17:18:14.7385792Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-17T17:18:14.9016749Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-17T17:18:15.0418412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-17T17:18:15.1683317Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-17T17:18:15.2582947Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-17T17:18:15.3501851Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-17T17:18:15.4194043Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:18:16.1859626Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T17:18:16.2342196Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:18:16.3054397Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-17T17:18:16.3069064Z ** R 2021-05-17T17:18:16.3531700Z ** inst 2021-05-17T17:18:16.3555002Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:19.4465375Z ** help 2021-05-17T17:18:19.7397123Z *** installing help indices 2021-05-17T17:18:19.9502684Z *** copying figures 2021-05-17T17:18:19.9511914Z ** building package indices 2021-05-17T17:18:20.3332273Z ** installing vignettes 2021-05-17T17:18:20.3514738Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:20.6168331Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:18:20.6397958Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:20.9634089Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:20.9670422Z * DONE (vctrs) 2021-05-17T17:18:21.2926660Z * installing *source* package ‘processx’ ... 2021-05-17T17:18:21.2968074Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:21.2970202Z ** using staged installation 2021-05-17T17:18:21.3164088Z ** libs 2021-05-17T17:18:21.3220468Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-17T17:18:21.4803722Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-17T17:18:21.4805209Z supervisor/utils.c -o supervisor/supervisor 2021-05-17T17:18:21.6815485Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:18:21.7851286Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-17T17:18:21.9013464Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-17T17:18:21.9765484Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-17T17:18:21.9766874Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-17T17:18:22.0046657Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:18:22.0906867Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-17T17:18:22.2164604Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-17T17:18:22.6089299Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-17T17:18:22.7291573Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-17T17:18:22.8644989Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-17T17:18:22.9737415Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-17T17:18:23.0633058Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-17T17:18:23.4525678Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-17T17:18:23.5768349Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-17T17:18:23.7005077Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-17T17:18:23.7722647Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-17T17:18:23.8596974Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:18:23.8945526Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-17T17:18:23.9020274Z ** R 2021-05-17T17:18:23.9184636Z ** inst 2021-05-17T17:18:23.9192680Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:25.8200259Z ** help 2021-05-17T17:18:25.9103365Z *** installing help indices 2021-05-17T17:18:25.9651070Z ** building package indices 2021-05-17T17:18:26.2457099Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:26.4845482Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:18:26.5256333Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:26.7835363Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:26.7853350Z * DONE (processx) 2021-05-17T17:18:27.0790528Z * installing *source* package ‘markdown’ ... 2021-05-17T17:18:27.0818921Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:27.0820125Z ** using staged installation 2021-05-17T17:18:27.0991568Z ** libs 2021-05-17T17:18:27.1050396Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-17T17:18:27.1828301Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-17T17:18:27.2460356Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-17T17:18:27.4535782Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-17T17:18:27.5838189Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-17T17:18:27.6696632Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-17T17:18:27.7228127Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-17T17:18:27.7702706Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-17T17:18:28.0197675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-17T17:18:28.1821147Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-17T17:18:29.4530541Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-17T17:18:29.5115602Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:18:29.5452087Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-17T17:18:29.5457394Z ** R 2021-05-17T17:18:29.5518782Z ** inst 2021-05-17T17:18:29.5538500Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:30.0352827Z ** help 2021-05-17T17:18:30.0799775Z *** installing help indices 2021-05-17T17:18:30.1121192Z ** building package indices 2021-05-17T17:18:30.3583701Z ** installing vignettes 2021-05-17T17:18:30.3646029Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:30.5773229Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:18:30.6042725Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:30.8350187Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:30.8362587Z * DONE (markdown) 2021-05-17T17:18:31.0823153Z * installing *source* package ‘highr’ ... 2021-05-17T17:18:31.0836158Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:31.0837821Z ** using staged installation 2021-05-17T17:18:31.1009447Z ** R 2021-05-17T17:18:31.1050334Z ** inst 2021-05-17T17:18:31.1061911Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:31.5102391Z ** help 2021-05-17T17:18:31.5245147Z *** installing help indices 2021-05-17T17:18:31.5435930Z ** building package indices 2021-05-17T17:18:31.7721207Z ** installing vignettes 2021-05-17T17:18:31.7788834Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:31.9938301Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:32.2102662Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:32.2113999Z * DONE (highr) 2021-05-17T17:18:32.5401603Z * installing *source* package ‘stringr’ ... 2021-05-17T17:18:32.5439630Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:32.5440832Z ** using staged installation 2021-05-17T17:18:32.5634001Z ** R 2021-05-17T17:18:32.5721594Z ** data 2021-05-17T17:18:32.5726428Z *** moving datasets to lazyload DB 2021-05-17T17:18:32.5929704Z ** inst 2021-05-17T17:18:32.5944943Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:33.2054782Z ** help 2021-05-17T17:18:33.2965980Z *** installing help indices 2021-05-17T17:18:33.3617214Z *** copying figures 2021-05-17T17:18:33.3619907Z ** building package indices 2021-05-17T17:18:33.6451004Z ** installing vignettes 2021-05-17T17:18:33.6507679Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:33.8772972Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:34.1178704Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:34.1188234Z * DONE (stringr) 2021-05-17T17:18:34.3678335Z * installing *source* package ‘rversions’ ... 2021-05-17T17:18:34.3691667Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:34.3693102Z ** using staged installation 2021-05-17T17:18:34.3853088Z ** R 2021-05-17T17:18:34.3894713Z ** inst 2021-05-17T17:18:34.3902621Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:34.7931849Z ** help 2021-05-17T17:18:34.8131609Z *** installing help indices 2021-05-17T17:18:34.8375203Z *** copying figures 2021-05-17T17:18:34.8377563Z ** building package indices 2021-05-17T17:18:35.0668198Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:35.3102597Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:35.5641740Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:35.5648316Z * DONE (rversions) 2021-05-17T17:18:36.0667056Z * installing *source* package ‘pillar’ ... 2021-05-17T17:18:36.0782486Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:36.0784122Z ** using staged installation 2021-05-17T17:18:36.0994961Z ** R 2021-05-17T17:18:36.1197533Z ** inst 2021-05-17T17:18:36.1234932Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:38.1086132Z ** help 2021-05-17T17:18:38.2013243Z *** installing help indices 2021-05-17T17:18:38.2690646Z *** copying figures 2021-05-17T17:18:38.2695505Z ** building package indices 2021-05-17T17:18:38.5672659Z ** installing vignettes 2021-05-17T17:18:38.5772724Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:38.9255538Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:39.2991533Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:39.3025294Z * DONE (pillar) 2021-05-17T17:18:39.6182373Z * installing *source* package ‘callr’ ... 2021-05-17T17:18:39.6213672Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:39.6214840Z ** using staged installation 2021-05-17T17:18:39.6373357Z ** R 2021-05-17T17:18:39.6528059Z ** inst 2021-05-17T17:18:39.6537119Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:43.2736804Z ** help 2021-05-17T17:18:43.4149382Z *** installing help indices 2021-05-17T17:18:43.4945850Z ** building package indices 2021-05-17T17:18:43.7960498Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:44.0346983Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:44.3571525Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:44.3572815Z * DONE (callr) 2021-05-17T17:18:44.8914423Z * installing *source* package ‘knitr’ ... 2021-05-17T17:18:44.9044778Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:44.9045688Z ** using staged installation 2021-05-17T17:18:44.9437394Z ** R 2021-05-17T17:18:44.9867548Z ** demo 2021-05-17T17:18:44.9874864Z ** inst 2021-05-17T17:18:44.9989763Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:49.7317918Z ** help 2021-05-17T17:18:49.9439714Z *** installing help indices 2021-05-17T17:18:50.0827610Z ** building package indices 2021-05-17T17:18:50.4239482Z ** installing vignettes 2021-05-17T17:18:50.4335702Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:50.6733102Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:51.0099457Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:51.0158924Z * DONE (knitr) 2021-05-17T17:18:51.2726762Z * installing *source* package ‘xopen’ ... 2021-05-17T17:18:51.2741016Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:51.2745487Z ** using staged installation 2021-05-17T17:18:51.2913817Z ** R 2021-05-17T17:18:51.2944436Z ** inst 2021-05-17T17:18:51.2954546Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:51.5854386Z ** help 2021-05-17T17:18:51.5999239Z *** installing help indices 2021-05-17T17:18:51.6268539Z ** building package indices 2021-05-17T17:18:51.8421519Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:52.0496051Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:52.2561800Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:52.2566915Z * DONE (xopen) 2021-05-17T17:18:52.7348716Z * installing *source* package ‘tibble’ ... 2021-05-17T17:18:52.7457470Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:52.7458863Z ** using staged installation 2021-05-17T17:18:52.7692591Z ** libs 2021-05-17T17:18:52.7753190Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-17T17:18:52.8313742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T17:18:52.9053848Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:18:52.9563297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-17T17:18:53.0686959Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:18:53.0972264Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-17T17:18:53.0973911Z ** R 2021-05-17T17:18:53.1153167Z ** inst 2021-05-17T17:18:53.1187795Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:55.1952397Z ** help 2021-05-17T17:18:55.2765883Z *** installing help indices 2021-05-17T17:18:55.3318307Z *** copying figures 2021-05-17T17:18:55.3323432Z ** building package indices 2021-05-17T17:18:55.6171112Z ** installing vignettes 2021-05-17T17:18:55.6237936Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:56.0520340Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:18:56.0827876Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:56.5132442Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:56.5133971Z * DONE (tibble) 2021-05-17T17:18:56.8141760Z * installing *source* package ‘pkgbuild’ ... 2021-05-17T17:18:56.8164167Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:56.8165381Z ** using staged installation 2021-05-17T17:18:56.8330888Z ** R 2021-05-17T17:18:56.8420409Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:18:58.1757395Z ** help 2021-05-17T17:18:58.2162077Z *** installing help indices 2021-05-17T17:18:58.2559884Z ** building package indices 2021-05-17T17:18:58.4922502Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:18:58.7838409Z ** testing if installed package can be loaded from final location 2021-05-17T17:18:59.1111787Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:18:59.1126439Z * DONE (pkgbuild) 2021-05-17T17:18:59.5614744Z * installing *source* package ‘roxygen2’ ... 2021-05-17T17:18:59.5694700Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-17T17:18:59.5695929Z ** using staged installation 2021-05-17T17:18:59.5913465Z ** libs 2021-05-17T17:18:59.5982332Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-17T17:19:04.7613690Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-17T17:19:08.1124697Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-17T17:19:11.4728946Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-17T17:19:14.8587740Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-17T17:19:20.2590713Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-17T17:19:23.7938025Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:19:23.9140436Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-17T17:19:23.9188641Z ** R 2021-05-17T17:19:23.9542294Z ** inst 2021-05-17T17:19:23.9565982Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:28.2082793Z ** help 2021-05-17T17:19:28.2862508Z *** installing help indices 2021-05-17T17:19:28.3434299Z *** copying figures 2021-05-17T17:19:28.3438004Z ** building package indices 2021-05-17T17:19:28.6135524Z ** installing vignettes 2021-05-17T17:19:28.6242968Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:29.0146999Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:19:29.0377413Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:29.5155762Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:29.5203568Z * DONE (roxygen2) 2021-05-17T17:19:29.7793683Z * installing *source* package ‘rematch2’ ... 2021-05-17T17:19:29.7806891Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:29.7808800Z ** using staged installation 2021-05-17T17:19:29.7962642Z ** R 2021-05-17T17:19:29.8009570Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:30.3516316Z ** help 2021-05-17T17:19:30.3854020Z *** installing help indices 2021-05-17T17:19:30.4099714Z ** building package indices 2021-05-17T17:19:30.6392508Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:31.0535391Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:31.4691381Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:31.4697987Z * DONE (rematch2) 2021-05-17T17:19:31.7750860Z * installing *source* package ‘rcmdcheck’ ... 2021-05-17T17:19:31.7777099Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:31.7778484Z ** using staged installation 2021-05-17T17:19:31.7934651Z ** R 2021-05-17T17:19:31.8019211Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:33.1452004Z ** help 2021-05-17T17:19:33.1895804Z *** installing help indices 2021-05-17T17:19:33.2221344Z ** building package indices 2021-05-17T17:19:33.4665046Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:33.7886020Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:34.1331422Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:34.1345906Z * DONE (rcmdcheck) 2021-05-17T17:19:34.4363413Z * installing *source* package ‘waldo’ ... 2021-05-17T17:19:34.4384857Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:34.4386061Z ** using staged installation 2021-05-17T17:19:34.4547083Z ** R 2021-05-17T17:19:34.4613111Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:19:35.2338031Z ** help 2021-05-17T17:19:35.2495757Z *** installing help indices 2021-05-17T17:19:35.2695330Z *** copying figures 2021-05-17T17:19:35.2697007Z ** building package indices 2021-05-17T17:19:35.4977151Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:19:35.7664860Z ** testing if installed package can be loaded from final location 2021-05-17T17:19:36.0529652Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:19:36.0539873Z * DONE (waldo) 2021-05-17T17:19:36.6249337Z * installing *source* package ‘testthat’ ... 2021-05-17T17:19:36.6385725Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-17T17:19:36.6386545Z ** using staged installation 2021-05-17T17:19:36.6636639Z ** libs 2021-05-17T17:19:36.6688411Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:19:36.7237412Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T17:19:36.7993868Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-17T17:19:37.7104856Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-17T17:19:38.3748432Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-17T17:19:57.1529743Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:19:57.3361679Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-17T17:19:57.3476167Z ** R 2021-05-17T17:19:57.3865876Z ** inst 2021-05-17T17:19:57.3902284Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:08.2331324Z ** help 2021-05-17T17:20:08.4670764Z *** installing help indices 2021-05-17T17:20:08.6626746Z *** copying figures 2021-05-17T17:20:08.6633027Z ** building package indices 2021-05-17T17:20:09.0277621Z ** installing vignettes 2021-05-17T17:20:09.0413547Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:09.2953152Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:20:09.3214782Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:09.8292248Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:09.8392263Z * DONE (testthat) 2021-05-17T17:20:10.2582690Z * installing *source* package ‘devtools’ ... 2021-05-17T17:20:10.2646384Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:10.2650717Z ** using staged installation 2021-05-17T17:20:10.2967850Z ** R 2021-05-17T17:20:10.3117626Z ** inst 2021-05-17T17:20:10.3128709Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:12.3356282Z ** help 2021-05-17T17:20:12.4701707Z *** installing help indices 2021-05-17T17:20:12.5622943Z *** copying figures 2021-05-17T17:20:12.5625899Z ** building package indices 2021-05-17T17:20:12.8660355Z ** installing vignettes 2021-05-17T17:20:12.8785088Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:13.6349660Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:14.4291474Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:14.4292759Z * DONE (devtools) 2021-05-17T17:20:14.4420804Z 2021-05-17T17:20:14.4421851Z The downloaded source packages are in 2021-05-17T17:20:14.4423300Z ‘/tmp/RtmpH6ypYH/downloaded_packages’ 2021-05-17T17:20:14.5350385Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-17T17:20:15.4465045Z 2021-05-17T17:20:15.7846573Z 2021-05-17T17:20:15.7850945Z checking for file ‘/tmp/RtmpH6ypYH/remotes731244990065/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-17T17:20:15.7927652Z 2021-05-17T17:20:15.7931898Z ✔ checking for file ‘/tmp/RtmpH6ypYH/remotes731244990065/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-17T17:20:15.7957695Z 2021-05-17T17:20:15.7983249Z 2021-05-17T17:20:15.7985233Z ─ preparing ‘desc’: 2021-05-17T17:20:15.7994486Z 2021-05-17T17:20:15.7996558Z 2021-05-17T17:20:15.8108449Z checking DESCRIPTION meta-information ... 2021-05-17T17:20:15.8134650Z 2021-05-17T17:20:15.8136832Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:20:15.8875863Z 2021-05-17T17:20:15.8907786Z 2021-05-17T17:20:15.8910861Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:20:15.8924265Z 2021-05-17T17:20:15.8954079Z 2021-05-17T17:20:15.8956304Z ─ checking for empty or unneeded directories 2021-05-17T17:20:15.8959567Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:20:15.8991048Z 2021-05-17T17:20:15.9015999Z 2021-05-17T17:20:15.9018123Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-17T17:20:16.0226135Z 2021-05-17T17:20:16.0229760Z 2021-05-17T17:20:16.0231534Z 2021-05-17T17:20:16.0344799Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:20:16.0345720Z (as ‘lib’ is unspecified) 2021-05-17T17:20:16.3663819Z * installing *source* package ‘desc’ ... 2021-05-17T17:20:16.3708889Z ** using staged installation 2021-05-17T17:20:16.3906626Z ** R 2021-05-17T17:20:16.4056711Z ** inst 2021-05-17T17:20:16.4074727Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:18.1214213Z ** help 2021-05-17T17:20:18.2847626Z *** installing help indices 2021-05-17T17:20:18.3826459Z ** building package indices 2021-05-17T17:20:18.6977588Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:18.9182832Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:19.1579816Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:19.1595596Z * DONE (desc) 2021-05-17T17:20:19.3891739Z 2021-05-17T17:20:19.3893205Z 2021-05-17T17:20:19.3907517Z checking for file ‘/tmp/RtmpH6ypYH/remotes731261f0bb0/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-17T17:20:19.3956966Z 2021-05-17T17:20:19.3961730Z ✔ checking for file ‘/tmp/RtmpH6ypYH/remotes731261f0bb0/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-17T17:20:19.3993952Z 2021-05-17T17:20:19.4032920Z 2021-05-17T17:20:19.4034305Z ─ preparing ‘ghtravis’: 2021-05-17T17:20:19.4034916Z 2021-05-17T17:20:19.4035470Z 2021-05-17T17:20:19.4118213Z checking DESCRIPTION meta-information ... 2021-05-17T17:20:19.4143964Z 2021-05-17T17:20:19.4146237Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:20:19.4552807Z 2021-05-17T17:20:19.4592478Z 2021-05-17T17:20:19.4595051Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:20:19.4603808Z 2021-05-17T17:20:19.4626872Z 2021-05-17T17:20:19.4629051Z ─ checking for empty or unneeded directories 2021-05-17T17:20:19.4632492Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:20:19.4704504Z 2021-05-17T17:20:19.4733931Z 2021-05-17T17:20:19.4736115Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-17T17:20:19.4963381Z 2021-05-17T17:20:19.4967874Z 2021-05-17T17:20:19.4969401Z 2021-05-17T17:20:19.5354510Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:20:19.5356689Z (as ‘lib’ is unspecified) 2021-05-17T17:20:19.8006019Z * installing *source* package ‘ghtravis’ ... 2021-05-17T17:20:19.8011995Z ** using staged installation 2021-05-17T17:20:19.8178674Z ** R 2021-05-17T17:20:19.8277504Z ** inst 2021-05-17T17:20:19.8289804Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:21.2387375Z ** help 2021-05-17T17:20:21.3022485Z *** installing help indices 2021-05-17T17:20:21.3494690Z ** building package indices 2021-05-17T17:20:21.6146119Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:22.3710784Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:23.1251820Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:23.1261863Z * DONE (ghtravis) 2021-05-17T17:20:23.1361372Z Using github PAT from envvar GITHUB_PAT 2021-05-17T17:20:23.2844817Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-17T17:20:24.3341708Z 2021-05-17T17:20:24.3343507Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-17T17:20:24.3344437Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-17T17:20:24.3345623Z generics (NA -> 0.1.0) [CRAN] 2021-05-17T17:20:24.3346601Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-17T17:20:24.3347503Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-17T17:20:24.3348395Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-17T17:20:24.3449856Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:20:24.3451524Z (as ‘lib’ is unspecified) 2021-05-17T17:20:40.0342325Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-17T17:20:41.3673175Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-17T17:20:41.3891607Z ================================================== 2021-05-17T17:20:41.3893238Z downloaded 89 KB 2021-05-17T17:20:41.3894137Z 2021-05-17T17:20:41.3930847Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-17T17:20:41.8733750Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-17T17:20:41.8811235Z ================================================== 2021-05-17T17:20:41.8812288Z downloaded 116 KB 2021-05-17T17:20:41.8812901Z 2021-05-17T17:20:41.8852007Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-17T17:20:42.2638232Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-17T17:20:42.2818365Z ================================================== 2021-05-17T17:20:42.2819452Z downloaded 195 KB 2021-05-17T17:20:42.2820001Z 2021-05-17T17:20:42.2872493Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-17T17:20:42.6648547Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-17T17:20:42.7116136Z ================================================== 2021-05-17T17:20:42.7118016Z downloaded 932 KB 2021-05-17T17:20:42.7119553Z 2021-05-17T17:20:42.7153952Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-17T17:20:43.0919023Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-17T17:20:43.1293339Z ================================================== 2021-05-17T17:20:43.1294397Z downloaded 690 KB 2021-05-17T17:20:43.1294920Z 2021-05-17T17:20:43.4590874Z * installing *source* package ‘tidyselect’ ... 2021-05-17T17:20:43.4624937Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:43.4626142Z ** using staged installation 2021-05-17T17:20:43.4812597Z ** R 2021-05-17T17:20:43.4919365Z ** inst 2021-05-17T17:20:43.4932509Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:44.5970718Z ** help 2021-05-17T17:20:44.6615540Z *** installing help indices 2021-05-17T17:20:44.7061619Z ** building package indices 2021-05-17T17:20:45.4413529Z ** installing vignettes 2021-05-17T17:20:45.4415610Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:45.4417235Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:45.6037907Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:45.6050661Z * DONE (tidyselect) 2021-05-17T17:20:45.9181054Z * installing *source* package ‘generics’ ... 2021-05-17T17:20:45.9216249Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:45.9217522Z ** using staged installation 2021-05-17T17:20:45.9371528Z ** R 2021-05-17T17:20:45.9432051Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:46.2890973Z ** help 2021-05-17T17:20:46.4304975Z *** installing help indices 2021-05-17T17:20:46.4819621Z ** building package indices 2021-05-17T17:20:46.7412469Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:46.9534110Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:47.1649385Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:47.1655238Z * DONE (generics) 2021-05-17T17:20:47.4700219Z * installing *source* package ‘cpp11’ ... 2021-05-17T17:20:47.4739890Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:47.4741102Z ** using staged installation 2021-05-17T17:20:47.4916705Z ** R 2021-05-17T17:20:47.4963636Z ** inst 2021-05-17T17:20:47.4996226Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:47.9384419Z ** help 2021-05-17T17:20:47.9635649Z *** installing help indices 2021-05-17T17:20:47.9842542Z ** building package indices 2021-05-17T17:20:48.2002910Z ** installing vignettes 2021-05-17T17:20:48.2079846Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:48.4135779Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:48.6157525Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:48.6167330Z * DONE (cpp11) 2021-05-17T17:20:49.1794652Z * installing *source* package ‘dplyr’ ... 2021-05-17T17:20:49.1942880Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:49.1943706Z ** using staged installation 2021-05-17T17:20:49.2191873Z ** libs 2021-05-17T17:20:49.2246033Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-17T17:20:49.3914445Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-17T17:20:49.5806403Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-17T17:20:49.7456489Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-17T17:20:50.3552003Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-17T17:20:50.4725754Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-17T17:20:50.6045564Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-17T17:20:50.7387098Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-17T17:20:50.9073047Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-17T17:20:51.0687267Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-17T17:20:51.1793384Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-17T17:20:51.3677289Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:20:51.4611771Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-17T17:20:51.4632163Z ** R 2021-05-17T17:20:51.5136047Z ** data 2021-05-17T17:20:51.5142532Z *** moving datasets to lazyload DB 2021-05-17T17:20:51.6251054Z ** inst 2021-05-17T17:20:51.6282014Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:20:56.5450947Z ** help 2021-05-17T17:20:57.0849594Z *** installing help indices 2021-05-17T17:20:57.3440382Z *** copying figures 2021-05-17T17:20:57.3445675Z ** building package indices 2021-05-17T17:20:57.7532638Z ** installing vignettes 2021-05-17T17:20:57.7679242Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:20:58.3200377Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:20:58.3407592Z ** testing if installed package can be loaded from final location 2021-05-17T17:20:58.9614926Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:20:58.9662622Z * DONE (dplyr) 2021-05-17T17:20:59.3774076Z * installing *source* package ‘tidyr’ ... 2021-05-17T17:20:59.3859676Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-17T17:20:59.3862850Z ** using staged installation 2021-05-17T17:20:59.4071239Z ** libs 2021-05-17T17:20:59.4137757Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-17T17:21:00.5295114Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-17T17:21:00.9179770Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-17T17:21:02.8279585Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-17T17:21:04.2835694Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:21:04.3727925Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-17T17:21:04.3753533Z ** R 2021-05-17T17:21:04.3931024Z ** data 2021-05-17T17:21:04.3943124Z *** moving datasets to lazyload DB 2021-05-17T17:21:04.6117931Z ** inst 2021-05-17T17:21:04.6141926Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:06.5103163Z ** help 2021-05-17T17:21:06.6499701Z *** installing help indices 2021-05-17T17:21:06.7343591Z *** copying figures 2021-05-17T17:21:06.7349404Z ** building package indices 2021-05-17T17:21:07.0371114Z ** installing vignettes 2021-05-17T17:21:07.0486235Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:07.5913579Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:21:07.6123367Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:08.1709145Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:08.1727811Z * DONE (tidyr) 2021-05-17T17:21:08.1890680Z 2021-05-17T17:21:08.1891636Z The downloaded source packages are in 2021-05-17T17:21:08.1893946Z ‘/tmp/RtmpH6ypYH/downloaded_packages’ 2021-05-17T17:21:08.3925946Z 2021-05-17T17:21:08.3942400Z checking for file ‘/tmp/RtmpH6ypYH/remotes731264083494/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-17T17:21:08.3960088Z 2021-05-17T17:21:08.3962016Z ✔ checking for file ‘/tmp/RtmpH6ypYH/remotes731264083494/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-17T17:21:08.4050667Z 2021-05-17T17:21:08.4084300Z 2021-05-17T17:21:08.4086388Z ─ preparing ‘aghast’: 2021-05-17T17:21:08.4220232Z checking DESCRIPTION meta-information ... 2021-05-17T17:21:08.4261545Z 2021-05-17T17:21:08.4262691Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:21:08.4614201Z 2021-05-17T17:21:08.4654179Z 2021-05-17T17:21:08.4655663Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:21:08.4688334Z 2021-05-17T17:21:08.4714858Z 2021-05-17T17:21:08.4716277Z ─ checking for empty or unneeded directories 2021-05-17T17:21:08.4720296Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:21:08.4729922Z 2021-05-17T17:21:08.4777199Z 2021-05-17T17:21:08.4778129Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-17T17:21:08.4849396Z 2021-05-17T17:21:08.4855640Z 2021-05-17T17:21:08.4857782Z 2021-05-17T17:21:08.4932606Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:21:08.4933865Z (as ‘lib’ is unspecified) 2021-05-17T17:21:08.7505786Z * installing *source* package ‘aghast’ ... 2021-05-17T17:21:08.7508944Z ** using staged installation 2021-05-17T17:21:08.7694084Z ** R 2021-05-17T17:21:08.7757392Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:09.2780575Z ** help 2021-05-17T17:21:09.3108298Z *** installing help indices 2021-05-17T17:21:09.3355663Z ** building package indices 2021-05-17T17:21:09.5688359Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:09.8018662Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:10.0362771Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:10.0374323Z * DONE (aghast) 2021-05-17T17:21:10.0478347Z Installing 1 packages: covr 2021-05-17T17:21:10.0560465Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:21:10.0561420Z (as ‘lib’ is unspecified) 2021-05-17T17:21:25.4804373Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-17T17:21:25.4804957Z 2021-05-17T17:21:25.4813976Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-17T17:21:25.8951150Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-17T17:21:26.0120211Z ================================================== 2021-05-17T17:21:26.0121615Z downloaded 81 KB 2021-05-17T17:21:26.0122267Z 2021-05-17T17:21:26.0181898Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-17T17:21:26.5414624Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-17T17:21:26.5489778Z ================================================== 2021-05-17T17:21:26.5490590Z downloaded 89 KB 2021-05-17T17:21:26.5490910Z 2021-05-17T17:21:26.5627020Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-17T17:21:27.0496276Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-17T17:21:27.0638696Z ================================================== 2021-05-17T17:21:27.0639644Z downloaded 144 KB 2021-05-17T17:21:27.0640258Z 2021-05-17T17:21:27.3698162Z * installing *source* package ‘lazyeval’ ... 2021-05-17T17:21:27.3728971Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-17T17:21:27.3730439Z ** using staged installation 2021-05-17T17:21:27.3872682Z ** libs 2021-05-17T17:21:27.3925742Z 2021-05-17T17:21:27.3927484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-17T17:21:27.4709612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:21:27.5164684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-17T17:21:27.5938132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-17T17:21:27.6932954Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-17T17:21:27.7839716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T17:21:27.8711804Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:21:27.9012851Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-17T17:21:27.9014126Z ** R 2021-05-17T17:21:27.9071890Z ** inst 2021-05-17T17:21:27.9089120Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:28.4928481Z ** help 2021-05-17T17:21:28.5532584Z *** installing help indices 2021-05-17T17:21:28.6027025Z ** building package indices 2021-05-17T17:21:28.8548640Z ** installing vignettes 2021-05-17T17:21:28.8627519Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:29.1073026Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:21:29.1294942Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:29.3533806Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:29.3542936Z * DONE (lazyeval) 2021-05-17T17:21:29.6385945Z * installing *source* package ‘rex’ ... 2021-05-17T17:21:29.6409306Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-17T17:21:29.6411088Z ** using staged installation 2021-05-17T17:21:29.6566599Z ** R 2021-05-17T17:21:29.6630152Z ** inst 2021-05-17T17:21:29.6641210Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:30.2450973Z ** help 2021-05-17T17:21:30.3012688Z *** installing help indices 2021-05-17T17:21:30.3468879Z ** building package indices 2021-05-17T17:21:30.5928366Z ** installing vignettes 2021-05-17T17:21:30.6029162Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:30.8094962Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:31.0421880Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:31.0430962Z * DONE (rex) 2021-05-17T17:21:31.4789972Z * installing *source* package ‘covr’ ... 2021-05-17T17:21:31.4853611Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-17T17:21:31.4855676Z ** using staged installation 2021-05-17T17:21:31.5089281Z ** libs 2021-05-17T17:21:31.5151888Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T17:21:31.5795877Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:21:31.6044630Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-17T17:21:31.6059077Z ** R 2021-05-17T17:21:31.6212256Z ** inst 2021-05-17T17:21:31.6235538Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:21:33.0991391Z ** help 2021-05-17T17:21:33.1752693Z *** installing help indices 2021-05-17T17:21:33.2325631Z *** copying figures 2021-05-17T17:21:33.2327370Z ** building package indices 2021-05-17T17:21:33.4867286Z ** installing vignettes 2021-05-17T17:21:33.4935074Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:21:33.7283026Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:21:33.7491707Z ** testing if installed package can be loaded from final location 2021-05-17T17:21:33.9936146Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:21:33.9954467Z * DONE (covr) 2021-05-17T17:21:34.0067051Z 2021-05-17T17:21:34.0067903Z The downloaded source packages are in 2021-05-17T17:21:34.0069488Z ‘/tmp/RtmpH6ypYH/downloaded_packages’ 2021-05-17T17:21:34.0228568Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-17T17:21:34.0229243Z Rscript -e "tic::before_install()" 2021-05-17T17:21:34.0276905Z shell: /usr/bin/bash -e {0} 2021-05-17T17:21:34.0277332Z env: 2021-05-17T17:21:34.0277824Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:21:34.0278335Z TIC_DEPLOY_KEY: 2021-05-17T17:21:34.0279851Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:21:34.0281891Z GITHUB_PAT: *** 2021-05-17T17:21:34.0282885Z COVERALLS_TOKEN: *** 2021-05-17T17:21:34.0283432Z continue-on-error: true 2021-05-17T17:21:34.0283956Z VDIFFR_RUN_TESTS: 2021-05-17T17:21:34.0284474Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:21:34.0284972Z TZ: UTC 2021-05-17T17:21:34.0285385Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:21:34.0285838Z NOT_CRAN: true 2021-05-17T17:21:34.0286257Z ##[endgroup] 2021-05-17T17:21:34.3421252Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:21:35.4580781Z Installing MNITemplate binaries 2021-05-17T17:21:35.4582293Z Running before_install: step_install_remote_binaries() 2021-05-17T17:21:35.4583666Z [1] "neuroconductor/MNITemplate" 2021-05-17T17:21:35.7546251Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T17:21:35.7559181Z Installing neurobase binaries 2021-05-17T17:21:35.7571994Z [1] "neuroconductor/neurobase" 2021-05-17T17:21:36.2396008Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T17:21:36.2548039Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-17T17:21:36.2548876Z remotes::install_deps(dependencies = TRUE) 2021-05-17T17:21:36.2549548Z remotes::install_cran("rcmdcheck") 2021-05-17T17:21:36.2550152Z remotes::install_cran("markdown") 2021-05-17T17:21:36.2557717Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:21:36.2558177Z env: 2021-05-17T17:21:36.2558665Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:21:36.2559194Z TIC_DEPLOY_KEY: 2021-05-17T17:21:36.2560080Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:21:36.2562005Z GITHUB_PAT: *** 2021-05-17T17:21:36.2562970Z COVERALLS_TOKEN: *** 2021-05-17T17:21:36.2563517Z continue-on-error: true 2021-05-17T17:21:36.2564046Z VDIFFR_RUN_TESTS: 2021-05-17T17:21:36.2564567Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:21:36.2565068Z TZ: UTC 2021-05-17T17:21:36.2565487Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:21:36.2565974Z NOT_CRAN: true 2021-05-17T17:21:36.2566395Z ##[endgroup] 2021-05-17T17:21:56.8885978Z MNITemplate (NA -> ef27207f4...) [GitHub] 2021-05-17T17:21:56.8887704Z neurobase (NA -> 1d4b17291...) [GitHub] 2021-05-17T17:21:56.8888782Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T17:21:56.8889796Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T17:21:56.8890971Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-17T17:21:56.8891884Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-17T17:21:56.8892871Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T17:21:56.8893808Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T17:21:56.8894728Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T17:21:56.8895678Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T17:21:56.8896621Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-17T17:21:56.8897672Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-17T17:21:56.8899217Z oro.nifti (NA -> 0.11.0 ) [CRAN] 2021-05-17T17:21:56.8900055Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T17:21:57.3945434Z Downloading GitHub repo neuroconductor/MNITemplate@ef27207f48885897b8bda277100c3bb8328ad412 2021-05-17T17:22:03.2713734Z oro.nifti (NA -> bd06b05d2...) [GitHub] 2021-05-17T17:22:03.2715195Z RNifti (NA -> 1.3.1 ) [CRAN] 2021-05-17T17:22:03.2716174Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T17:22:03.2717110Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T17:22:03.8027842Z Downloading GitHub repo neuroconductor/oro.nifti@bd06b05d2a090c743e51d745a826e8b77af278f0 2021-05-17T17:22:06.8188165Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-17T17:22:06.8189683Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T17:22:06.8190692Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T17:22:06.8191651Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T17:22:06.8192622Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T17:22:06.8193569Z rticles (NA -> 0.19 ) [CRAN] 2021-05-17T17:22:06.8194479Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T17:22:06.8195516Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T17:22:07.3329578Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-17T17:22:09.7751776Z 2021-05-17T17:22:10.0004344Z 2021-05-17T17:22:10.0012390Z checking for file ‘/tmp/RtmpWCL5H0/remotesd55812ed591d/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-17T17:22:10.0081699Z 2021-05-17T17:22:10.0084120Z ✔ checking for file ‘/tmp/RtmpWCL5H0/remotesd55812ed591d/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-17T17:22:10.0194371Z 2021-05-17T17:22:10.0195356Z 2021-05-17T17:22:10.0196386Z ─ preparing ‘RNifti’: 2021-05-17T17:22:10.0196738Z 2021-05-17T17:22:10.0197080Z 2021-05-17T17:22:10.0339041Z checking DESCRIPTION meta-information ... 2021-05-17T17:22:10.0348206Z 2021-05-17T17:22:10.0349182Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:22:10.0371646Z ─ cleaning src 2021-05-17T17:22:10.0373466Z 2021-05-17T17:22:10.0394057Z 2021-05-17T17:22:10.0395377Z ─ running ‘cleanup’ 2021-05-17T17:22:10.0971055Z 2021-05-17T17:22:10.0973096Z 2021-05-17T17:22:10.0975524Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:22:10.1373981Z 2021-05-17T17:22:10.1399145Z 2021-05-17T17:22:10.1402526Z ─ checking for empty or unneeded directories 2021-05-17T17:22:10.1432716Z 2021-05-17T17:22:10.1455748Z 2021-05-17T17:22:10.1457854Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-17T17:22:10.4912972Z 2021-05-17T17:22:10.4917691Z 2021-05-17T17:22:10.4920221Z 2021-05-17T17:22:10.5072531Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:22:10.5073825Z (as ‘lib’ is unspecified) 2021-05-17T17:22:10.8886687Z * installing *source* package ‘RNifti’ ... 2021-05-17T17:22:10.8888317Z ** using staged installation 2021-05-17T17:22:10.9068843Z ** libs 2021-05-17T17:22:10.9126738Z 2021-05-17T17:22:10.9129460Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-17T17:22:31.7296014Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-17T17:22:31.8307987Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-17T17:22:31.9314589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-17T17:22:31.9795704Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-17T17:22:32.1074353Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-17T17:22:32.6732553Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-17T17:22:32.7336296Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-17T17:22:32.8811374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-17T17:22:33.0717233Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-17T17:22:33.2328229Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-17T17:22:33.5120655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-17T17:22:33.6403531Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-17T17:22:34.2364180Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-17T17:22:34.3668894Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-17T17:22:34.7633089Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-17T17:22:34.8059235Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-17T17:22:34.8588177Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-17T17:22:34.9568440Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-17T17:22:36.2642891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-17T17:22:38.9916529Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:22:39.2113504Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-17T17:22:39.2252244Z ** R 2021-05-17T17:22:39.2341036Z ** inst 2021-05-17T17:22:39.2372918Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:22:40.0984166Z ** help 2021-05-17T17:22:40.1554936Z *** installing help indices 2021-05-17T17:22:40.1942310Z ** building package indices 2021-05-17T17:22:40.4465011Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:22:40.7645938Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:22:40.7928648Z ** testing if installed package can be loaded from final location 2021-05-17T17:22:41.0991518Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:22:41.1006898Z * DONE (RNifti) 2021-05-17T17:22:41.1207229Z Installing 7 packages: base64enc, tinytex, htmltools, rmarkdown, rticles, abind, bitops 2021-05-17T17:22:41.1216945Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:22:41.1218178Z (as ‘lib’ is unspecified) 2021-05-17T17:22:56.9813113Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T17:22:58.3095053Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T17:22:58.3095855Z ================================================== 2021-05-17T17:22:58.3096349Z downloaded 7843 bytes 2021-05-17T17:22:58.3096680Z 2021-05-17T17:22:58.3138622Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T17:22:58.6960640Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T17:22:58.6962188Z ================================================== 2021-05-17T17:22:58.6962899Z downloaded 28 KB 2021-05-17T17:22:58.6963423Z 2021-05-17T17:22:58.7013542Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-17T17:22:59.0966750Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-17T17:22:59.1066041Z ================================================== 2021-05-17T17:22:59.1066593Z downloaded 70 KB 2021-05-17T17:22:59.1066913Z 2021-05-17T17:22:59.1107517Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T17:22:59.4887248Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T17:22:59.5483085Z ================================================== 2021-05-17T17:22:59.5484484Z downloaded 3.1 MB 2021-05-17T17:22:59.5485152Z 2021-05-17T17:22:59.5528567Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rticles_0.19.tar.gz' 2021-05-17T17:22:59.9285319Z Content type 'binary/octet-stream' length 1634953 bytes (1.6 MB) 2021-05-17T17:22:59.9768841Z ================================================== 2021-05-17T17:22:59.9770180Z downloaded 1.6 MB 2021-05-17T17:22:59.9770741Z 2021-05-17T17:22:59.9821563Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T17:23:00.3604200Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T17:23:00.3605596Z ================================================== 2021-05-17T17:23:00.3606297Z downloaded 21 KB 2021-05-17T17:23:00.3606815Z 2021-05-17T17:23:00.3642843Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T17:23:00.7416433Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T17:23:00.7417431Z ================================================== 2021-05-17T17:23:00.7418100Z downloaded 10 KB 2021-05-17T17:23:00.7418829Z 2021-05-17T17:23:01.0019274Z * installing *source* package ‘base64enc’ ... 2021-05-17T17:23:01.0033184Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:01.0038595Z ** using staged installation 2021-05-17T17:23:01.0160419Z ** libs 2021-05-17T17:23:01.0219195Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:23:01.1520558Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T17:23:01.2527876Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T17:23:01.3469889Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:23:01.3773028Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T17:23:01.3785229Z ** R 2021-05-17T17:23:01.3822876Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:01.6815672Z ** help 2021-05-17T17:23:01.7082130Z *** installing help indices 2021-05-17T17:23:01.7272930Z ** building package indices 2021-05-17T17:23:01.9611699Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:02.1734918Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:23:02.1954100Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:02.3954369Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:02.3965090Z * DONE (base64enc) 2021-05-17T17:23:02.6427388Z * installing *source* package ‘tinytex’ ... 2021-05-17T17:23:02.6442415Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:02.6444918Z ** using staged installation 2021-05-17T17:23:02.6675795Z ** R 2021-05-17T17:23:02.6758655Z ** inst 2021-05-17T17:23:02.6766810Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:03.4684639Z ** help 2021-05-17T17:23:03.5047662Z *** installing help indices 2021-05-17T17:23:03.5354120Z ** building package indices 2021-05-17T17:23:03.7679391Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:03.9843352Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:04.2464901Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:04.2479438Z * DONE (tinytex) 2021-05-17T17:23:04.5222176Z * installing *source* package ‘abind’ ... 2021-05-17T17:23:04.5236136Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:04.5237681Z ** using staged installation 2021-05-17T17:23:04.5361620Z ** R 2021-05-17T17:23:04.5418371Z ** inst 2021-05-17T17:23:04.5427425Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:05.1695225Z ** help 2021-05-17T17:23:05.2038177Z *** installing help indices 2021-05-17T17:23:05.2289772Z ** building package indices 2021-05-17T17:23:05.4548029Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:05.6752271Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:05.9051308Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:05.9060674Z * DONE (abind) 2021-05-17T17:23:06.1607251Z * installing *source* package ‘bitops’ ... 2021-05-17T17:23:06.1617477Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:06.1618615Z ** using staged installation 2021-05-17T17:23:06.1734469Z ** libs 2021-05-17T17:23:06.1790505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T17:23:06.3956753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T17:23:06.4633217Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:23:06.5163105Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:23:06.5373133Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T17:23:06.5374558Z ** R 2021-05-17T17:23:06.5391606Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:06.7967081Z ** help 2021-05-17T17:23:06.8252234Z *** installing help indices 2021-05-17T17:23:06.8455941Z ** building package indices 2021-05-17T17:23:07.0803450Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:07.2941376Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:23:07.3165015Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:07.5203853Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:07.5211310Z * DONE (bitops) 2021-05-17T17:23:07.8027763Z * installing *source* package ‘htmltools’ ... 2021-05-17T17:23:07.8052763Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:07.8054689Z ** using staged installation 2021-05-17T17:23:07.8220480Z ** libs 2021-05-17T17:23:07.8271402Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:23:07.8783619Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T17:23:08.0006543Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:23:08.0259073Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T17:23:08.0273805Z ** R 2021-05-17T17:23:08.0435531Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:09.6522604Z ** help 2021-05-17T17:23:09.7443013Z *** installing help indices 2021-05-17T17:23:09.8116905Z ** building package indices 2021-05-17T17:23:10.0978162Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:10.3419059Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:23:10.3623718Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:10.6220269Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:10.6236655Z * DONE (htmltools) 2021-05-17T17:23:11.5119924Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T17:23:11.5445674Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:11.5446516Z ** using staged installation 2021-05-17T17:23:11.5760835Z ** R 2021-05-17T17:23:11.6191800Z ** inst 2021-05-17T17:23:11.6433035Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:15.5100648Z ** help 2021-05-17T17:23:15.7325382Z *** installing help indices 2021-05-17T17:23:15.8986890Z *** copying figures 2021-05-17T17:23:15.8988678Z ** building package indices 2021-05-17T17:23:16.2371024Z ** installing vignettes 2021-05-17T17:23:16.2433729Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:16.5174819Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:16.8631845Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:16.8700771Z * DONE (rmarkdown) 2021-05-17T17:23:17.5217211Z * installing *source* package ‘rticles’ ... 2021-05-17T17:23:17.5408872Z ** package ‘rticles’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:17.5411566Z ** using staged installation 2021-05-17T17:23:17.5657847Z ** R 2021-05-17T17:23:17.5729608Z ** inst 2021-05-17T17:23:17.5980255Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:18.1211151Z ** help 2021-05-17T17:23:18.1611223Z *** installing help indices 2021-05-17T17:23:18.1965636Z ** building package indices 2021-05-17T17:23:18.4325557Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:18.7270189Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:19.0232398Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:19.0278386Z * DONE (rticles) 2021-05-17T17:23:19.0430017Z 2021-05-17T17:23:19.0431283Z The downloaded source packages are in 2021-05-17T17:23:19.0432642Z ‘/tmp/RtmpWCL5H0/downloaded_packages’ 2021-05-17T17:23:19.2976011Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-17T17:23:19.2976994Z Use `force = TRUE` to force installation 2021-05-17T17:23:19.5172011Z 2021-05-17T17:23:19.5186308Z checking for file ‘/tmp/RtmpWCL5H0/remotesd55835c05200/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ ... 2021-05-17T17:23:19.5211868Z 2021-05-17T17:23:19.5214821Z ✔ checking for file ‘/tmp/RtmpWCL5H0/remotesd55835c05200/neuroconductor-oro.nifti-bd06b05/DESCRIPTION’ 2021-05-17T17:23:19.5491296Z 2021-05-17T17:23:19.5508336Z 2021-05-17T17:23:19.5511375Z ─ preparing ‘oro.nifti’: 2021-05-17T17:23:19.5666201Z checking DESCRIPTION meta-information ... 2021-05-17T17:23:19.5689351Z 2021-05-17T17:23:19.5691815Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:23:19.7296609Z 2021-05-17T17:23:19.7326678Z 2021-05-17T17:23:19.7331964Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:23:19.7342895Z 2021-05-17T17:23:19.7365517Z 2021-05-17T17:23:19.7367777Z ─ checking for empty or unneeded directories 2021-05-17T17:23:19.7371491Z Removed empty directory ‘oro.nifti/vignettes’ 2021-05-17T17:23:19.7396116Z 2021-05-17T17:23:19.7398425Z 2021-05-17T17:23:19.7400686Z Omitted ‘LazyData’ and ‘LazyDataCompression’ from DESCRIPTION 2021-05-17T17:23:19.7502420Z 2021-05-17T17:23:19.7530899Z 2021-05-17T17:23:19.7533718Z ─ building ‘oro.nifti_0.10.3.tar.gz’ 2021-05-17T17:23:20.3392304Z 2021-05-17T17:23:20.3395314Z 2021-05-17T17:23:20.3396764Z 2021-05-17T17:23:20.3873988Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:23:20.3874997Z (as ‘lib’ is unspecified) 2021-05-17T17:23:20.9984388Z * installing *source* package ‘oro.nifti’ ... 2021-05-17T17:23:20.9985729Z ** using staged installation 2021-05-17T17:23:21.0196261Z ** R 2021-05-17T17:23:21.0701046Z ** demo 2021-05-17T17:23:21.0708669Z ** inst 2021-05-17T17:23:21.0784803Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:28.4839634Z 2021-05-17T17:23:28.4840974Z ** help 2021-05-17T17:23:28.4842393Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-17T17:23:28.9039119Z *** installing help indices 2021-05-17T17:23:29.2221413Z ** building package indices 2021-05-17T17:23:29.6921174Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:30.3432279Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:31.1427297Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:31.1535149Z * DONE (oro.nifti) 2021-05-17T17:23:31.1751120Z Installing 3 packages: RNifti, abind, bitops 2021-05-17T17:23:31.1757991Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:23:31.1759212Z (as ‘lib’ is unspecified) 2021-05-17T17:23:47.4169101Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T17:23:47.8224196Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T17:23:47.8226359Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T17:23:47.8227509Z In addition: Warning message: 2021-05-17T17:23:47.8228285Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T17:23:47.8230154Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-17T17:23:47.8231882Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-17T17:23:47.8232974Z download of package ‘RNifti’ failed 2021-05-17T17:23:47.8238935Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T17:23:48.1009013Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T17:23:48.1011182Z ================================================== 2021-05-17T17:23:48.1012227Z downloaded 21 KB 2021-05-17T17:23:48.1012945Z 2021-05-17T17:23:48.1063030Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T17:23:48.4821235Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T17:23:48.4822028Z ================================================== 2021-05-17T17:23:48.4823923Z downloaded 10 KB 2021-05-17T17:23:48.4824260Z 2021-05-17T17:23:48.7363245Z * installing *source* package ‘abind’ ... 2021-05-17T17:23:48.7377024Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:48.7407963Z ** using staged installation 2021-05-17T17:23:48.7552143Z ** R 2021-05-17T17:23:48.7613381Z ** inst 2021-05-17T17:23:48.7622339Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:49.3999412Z ** help 2021-05-17T17:23:49.4304721Z *** installing help indices 2021-05-17T17:23:49.4563727Z ** building package indices 2021-05-17T17:23:49.7117166Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:49.9253665Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:50.1343264Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:50.1352266Z * DONE (abind) 2021-05-17T17:23:50.3779592Z * installing *source* package ‘bitops’ ... 2021-05-17T17:23:50.3789832Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T17:23:50.3822329Z ** using staged installation 2021-05-17T17:23:50.3938677Z ** libs 2021-05-17T17:23:50.3993296Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T17:23:50.6114940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T17:23:50.6809307Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:23:50.7361448Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:23:50.7572105Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T17:23:50.7577205Z ** R 2021-05-17T17:23:50.7605799Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:51.0136162Z ** help 2021-05-17T17:23:51.0433813Z *** installing help indices 2021-05-17T17:23:51.0688162Z ** building package indices 2021-05-17T17:23:51.2990791Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:51.5137955Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:23:51.5351285Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:51.7321587Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:51.7326633Z * DONE (bitops) 2021-05-17T17:23:51.7404334Z 2021-05-17T17:23:51.7405411Z The downloaded source packages are in 2021-05-17T17:23:51.7406901Z ‘/tmp/RtmpWCL5H0/downloaded_packages’ 2021-05-17T17:23:51.9887513Z Skipping install of 'oro.nifti' from a github remote, the SHA1 (bd06b05d) has not changed since last install. 2021-05-17T17:23:51.9888814Z Use `force = TRUE` to force installation 2021-05-17T17:23:52.2288900Z 2021-05-17T17:23:52.2289829Z 2021-05-17T17:23:52.2291486Z 2021-05-17T17:23:52.2291882Z checking 2021-05-17T17:23:52.2292268Z 2021-05-17T17:23:52.2292693Z checking for file 2021-05-17T17:23:52.2293105Z 2021-05-17T17:23:52.2305211Z checking for file ‘/tmp/RtmpWCL5H0/remotesd5582f0273a3/neuroconductor-MNITemplate-ef27207/DESCRIPTION’ 2021-05-17T17:23:52.2326432Z 2021-05-17T17:23:52.2328333Z ✔ checking for file ‘/tmp/RtmpWCL5H0/remotesd5582f0273a3/neuroconductor-MNITemplate-ef27207/DESCRIPTION’ 2021-05-17T17:23:52.2651088Z 2021-05-17T17:23:52.2663086Z 2021-05-17T17:23:52.2665481Z ─ preparing ‘MNITemplate’: 2021-05-17T17:23:52.2674389Z 2021-05-17T17:23:52.2676427Z 2021-05-17T17:23:52.2769725Z checking DESCRIPTION meta-information ... 2021-05-17T17:23:52.2794605Z 2021-05-17T17:23:52.2796886Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:23:52.3093497Z 2021-05-17T17:23:52.3121318Z 2021-05-17T17:23:52.3123947Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:23:52.3132654Z 2021-05-17T17:23:52.3153432Z 2021-05-17T17:23:52.3161622Z ─ checking for empty or unneeded directories 2021-05-17T17:23:52.3172667Z 2021-05-17T17:23:52.3193306Z 2021-05-17T17:23:52.3195442Z ─ building ‘MNITemplate_1.0.0.tar.gz’ 2021-05-17T17:23:53.9834458Z 2021-05-17T17:23:53.9839086Z 2021-05-17T17:23:53.9841608Z 2021-05-17T17:23:54.0276915Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:23:54.0278443Z (as ‘lib’ is unspecified) 2021-05-17T17:23:55.0955437Z * installing *source* package ‘MNITemplate’ ... 2021-05-17T17:23:55.0956307Z ** using staged installation 2021-05-17T17:23:55.1113732Z ** R 2021-05-17T17:23:55.1141037Z ** inst 2021-05-17T17:23:55.1414689Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:23:55.8519730Z ** help 2021-05-17T17:23:55.8676480Z *** installing help indices 2021-05-17T17:23:55.8872358Z ** building package indices 2021-05-17T17:23:56.1015922Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:23:56.7738174Z ** testing if installed package can be loaded from final location 2021-05-17T17:23:57.4610218Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:23:57.4616957Z * DONE (MNITemplate) 2021-05-17T17:23:57.9925192Z Downloading GitHub repo neuroconductor/neurobase@1d4b172915192d419b4defb2e56d84d7541c03cd 2021-05-17T17:24:01.5913941Z 2021-05-17T17:24:01.5917142Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T17:24:01.5918795Z R.oo (NA -> 1.24.0) [CRAN] 2021-05-17T17:24:01.5920290Z R.utils (NA -> 2.10.1) [CRAN] 2021-05-17T17:24:01.5921815Z matrixStats (NA -> 0.58.0) [CRAN] 2021-05-17T17:24:01.5927155Z Installing 4 packages: R.methodsS3, R.oo, R.utils, matrixStats 2021-05-17T17:24:01.5938421Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:24:01.5940255Z (as ‘lib’ is unspecified) 2021-05-17T17:24:17.5998904Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T17:24:18.0206954Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T17:24:18.0209301Z ================================================== 2021-05-17T17:24:18.0210840Z downloaded 23 KB 2021-05-17T17:24:18.0211762Z 2021-05-17T17:24:18.0243798Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T17:24:18.4377124Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T17:24:18.4761203Z ================================================== 2021-05-17T17:24:18.4762959Z downloaded 373 KB 2021-05-17T17:24:18.4764187Z 2021-05-17T17:24:18.4810747Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-17T17:24:18.8640602Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-17T17:24:18.8945732Z ================================================== 2021-05-17T17:24:18.8946911Z downloaded 353 KB 2021-05-17T17:24:18.8947443Z 2021-05-17T17:24:18.8988160Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T17:24:19.3116984Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T17:24:19.3344702Z ================================================== 2021-05-17T17:24:19.3345567Z downloaded 190 KB 2021-05-17T17:24:19.3345988Z 2021-05-17T17:24:19.6008249Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T17:24:19.6025444Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:19.6027400Z ** using staged installation 2021-05-17T17:24:19.6165885Z ** R 2021-05-17T17:24:19.6239847Z ** inst 2021-05-17T17:24:19.6247645Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:24:20.1731780Z ** help 2021-05-17T17:24:20.2172546Z *** installing help indices 2021-05-17T17:24:20.2574136Z ** building package indices 2021-05-17T17:24:20.5118223Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:24:20.7301100Z ** testing if installed package can be loaded from final location 2021-05-17T17:24:20.9513348Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:24:20.9527520Z * DONE (R.methodsS3) 2021-05-17T17:24:21.4598798Z * installing *source* package ‘matrixStats’ ... 2021-05-17T17:24:21.4718851Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T17:24:21.4720596Z ** using staged installation 2021-05-17T17:24:21.4892221Z ** libs 2021-05-17T17:24:21.4965684Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T17:24:21.5537795Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T17:24:21.6640872Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T17:24:21.7892132Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T17:24:21.9041388Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T17:24:22.0715709Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T17:24:23.6252098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T17:24:24.0733295Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T17:24:25.8223121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T17:24:26.0826693Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T17:24:26.1556368Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T17:24:26.3847667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T17:24:26.5582876Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T17:24:26.7308227Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T17:24:26.8093704Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T17:24:28.4653635Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T17:24:29.6385149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T17:24:30.8065163Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T17:24:31.8043397Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T17:24:32.7886200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T17:24:35.0796220Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T17:24:35.2534451Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T17:24:36.4466771Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T17:24:37.1297507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T17:24:38.1551098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T17:24:38.6626027Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T17:24:40.4401587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T17:24:54.1679162Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T17:24:54.8032866Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T17:24:55.6285737Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T17:24:55.7891283Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T17:24:55.9166474Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T17:24:56.2142630Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T17:24:56.4211239Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T17:24:56.9005952Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T17:25:57.0452831Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:25:57.1557195Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T17:25:57.1721060Z ** R 2021-05-17T17:25:57.1964231Z ** inst 2021-05-17T17:25:57.2015802Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:25:58.7251185Z ** help 2021-05-17T17:25:58.8789327Z *** installing help indices 2021-05-17T17:25:58.9774587Z ** building package indices 2021-05-17T17:25:59.2931212Z ** installing vignettes 2021-05-17T17:25:59.2985431Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:25:59.5043773Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:25:59.5320638Z ** testing if installed package can be loaded from final location 2021-05-17T17:25:59.7546677Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:25:59.7571393Z * DONE (matrixStats) 2021-05-17T17:26:00.2136946Z * installing *source* package ‘R.oo’ ... 2021-05-17T17:26:00.2221663Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:00.2223097Z ** using staged installation 2021-05-17T17:26:00.2372183Z ** R 2021-05-17T17:26:00.2757889Z ** inst 2021-05-17T17:26:00.2773464Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:03.3980308Z ** help 2021-05-17T17:26:03.9255223Z *** installing help indices 2021-05-17T17:26:04.3143792Z ** building package indices 2021-05-17T17:26:05.0414643Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:05.1063882Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:05.4521502Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:05.4578549Z * DONE (R.oo) 2021-05-17T17:26:06.0506291Z * installing *source* package ‘R.utils’ ... 2021-05-17T17:26:06.0652428Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:06.0653714Z ** using staged installation 2021-05-17T17:26:06.0814716Z ** R 2021-05-17T17:26:06.1592807Z ** inst 2021-05-17T17:26:06.1606605Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:12.9299382Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T17:26:12.9301320Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T17:26:12.9303325Z ** help 2021-05-17T17:26:13.9108294Z *** installing help indices 2021-05-17T17:26:14.4284341Z ** building package indices 2021-05-17T17:26:15.2868368Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:15.5742875Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:16.0480652Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:16.0598989Z * DONE (R.utils) 2021-05-17T17:26:16.0769723Z 2021-05-17T17:26:16.0771092Z The downloaded source packages are in 2021-05-17T17:26:16.0773808Z ‘/tmp/RtmpWCL5H0/downloaded_packages’ 2021-05-17T17:26:16.2897502Z 2021-05-17T17:26:16.2911311Z checking for file ‘/tmp/RtmpWCL5H0/remotesd5582ce067e5/neuroconductor-neurobase-1d4b172/DESCRIPTION’ ... 2021-05-17T17:26:16.2967894Z 2021-05-17T17:26:16.2975375Z ✔ checking for file ‘/tmp/RtmpWCL5H0/remotesd5582ce067e5/neuroconductor-neurobase-1d4b172/DESCRIPTION’ 2021-05-17T17:26:16.3211412Z 2021-05-17T17:26:16.3222985Z 2021-05-17T17:26:16.3224434Z ─ preparing ‘neurobase’: 2021-05-17T17:26:16.3230381Z 2021-05-17T17:26:16.3231091Z 2021-05-17T17:26:16.3371048Z checking DESCRIPTION meta-information ... 2021-05-17T17:26:16.3403667Z 2021-05-17T17:26:16.3405034Z ✔ checking DESCRIPTION meta-information 2021-05-17T17:26:16.4330744Z 2021-05-17T17:26:16.4359077Z 2021-05-17T17:26:16.4360895Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:26:16.4366651Z 2021-05-17T17:26:16.4398238Z 2021-05-17T17:26:16.4399610Z ─ checking for empty or unneeded directories 2021-05-17T17:26:16.4421143Z 2021-05-17T17:26:16.4459927Z 2021-05-17T17:26:16.4461224Z ─ building ‘neurobase_1.30.1.tar.gz’ 2021-05-17T17:26:16.5204587Z 2021-05-17T17:26:16.5205739Z 2021-05-17T17:26:16.5206283Z 2021-05-17T17:26:16.5312626Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:26:16.5314302Z (as ‘lib’ is unspecified) 2021-05-17T17:26:16.8619366Z * installing *source* package ‘neurobase’ ... 2021-05-17T17:26:16.8623018Z ** using staged installation 2021-05-17T17:26:16.8821760Z ** R 2021-05-17T17:26:16.9053445Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:19.6296013Z ** help 2021-05-17T17:26:19.8220940Z *** installing help indices 2021-05-17T17:26:19.9586846Z ** building package indices 2021-05-17T17:26:20.2931168Z ** installing vignettes 2021-05-17T17:26:20.2990991Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:21.1224208Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:21.9351228Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:21.9374115Z * DONE (neurobase) 2021-05-17T17:26:21.9589585Z Installing 12 packages: base64enc, R.methodsS3, R.oo, RNifti, abind, bitops, tinytex, htmltools, R.utils, matrixStats, oro.nifti, rmarkdown 2021-05-17T17:26:21.9595771Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T17:26:21.9596935Z (as ‘lib’ is unspecified) 2021-05-17T17:26:38.2056949Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T17:26:38.8605238Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T17:26:38.8607062Z ================================================== 2021-05-17T17:26:38.8608683Z downloaded 7843 bytes 2021-05-17T17:26:38.8609436Z 2021-05-17T17:26:38.8733540Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T17:26:39.3790471Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T17:26:39.3853071Z ================================================== 2021-05-17T17:26:39.3854027Z downloaded 23 KB 2021-05-17T17:26:39.3854543Z 2021-05-17T17:26:39.3897821Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T17:26:40.4928985Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T17:26:40.5213198Z ================================================== 2021-05-17T17:26:40.5214088Z downloaded 373 KB 2021-05-17T17:26:40.5214594Z 2021-05-17T17:26:40.5254520Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T17:26:40.6906682Z Error in download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T17:26:40.6911359Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz' 2021-05-17T17:26:40.6913883Z In addition: Warning message: 2021-05-17T17:26:40.6915809Z In download.file(url, destfile, method, mode = "wb", ...) : 2021-05-17T17:26:40.6919622Z cannot open URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RNifti_1.3.1.tar.gz': HTTP status was '500 Internal Server Error' 2021-05-17T17:26:40.6923045Z Warning in download.packages(pkgs, destdir = tmpd, available = available, : 2021-05-17T17:26:40.6928779Z download of package ‘RNifti’ failed 2021-05-17T17:26:40.6931732Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T17:26:42.9501072Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T17:26:42.9502324Z ================================================== 2021-05-17T17:26:42.9503173Z downloaded 21 KB 2021-05-17T17:26:42.9503717Z 2021-05-17T17:26:42.9543244Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T17:26:43.4452201Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T17:26:43.4457305Z ================================================== 2021-05-17T17:26:43.4457878Z downloaded 10 KB 2021-05-17T17:26:43.4458257Z 2021-05-17T17:26:43.4495507Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T17:26:44.1045052Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T17:26:44.1050615Z ================================================== 2021-05-17T17:26:44.1051289Z downloaded 28 KB 2021-05-17T17:26:44.1051719Z 2021-05-17T17:26:44.1083670Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-17T17:26:45.1646302Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-17T17:26:45.1647759Z ================================================== 2021-05-17T17:26:45.1648977Z downloaded 70 KB 2021-05-17T17:26:45.1649470Z 2021-05-17T17:26:45.1693864Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-17T17:26:47.6273285Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-17T17:26:47.6546529Z ================================================== 2021-05-17T17:26:47.6548194Z downloaded 353 KB 2021-05-17T17:26:47.6549429Z 2021-05-17T17:26:47.6589009Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T17:26:48.1649570Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T17:26:48.1845837Z ================================================== 2021-05-17T17:26:48.1846440Z downloaded 190 KB 2021-05-17T17:26:48.1846766Z 2021-05-17T17:26:48.1892402Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/oro.nifti_0.11.0.tar.gz' 2021-05-17T17:26:49.1264378Z Content type 'binary/octet-stream' length 5230493 bytes (5.0 MB) 2021-05-17T17:26:49.3673082Z ================================================== 2021-05-17T17:26:49.3673878Z downloaded 5.0 MB 2021-05-17T17:26:49.3674273Z 2021-05-17T17:26:49.3729373Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T17:26:50.2325973Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T17:26:50.3653351Z ================================================== 2021-05-17T17:26:50.3654164Z downloaded 3.1 MB 2021-05-17T17:26:50.3654811Z 2021-05-17T17:26:50.6236707Z * installing *source* package ‘base64enc’ ... 2021-05-17T17:26:50.6247227Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:50.6295571Z ** using staged installation 2021-05-17T17:26:50.6477301Z ** libs 2021-05-17T17:26:50.6534642Z 2021-05-17T17:26:50.6537612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T17:26:50.7886913Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T17:26:50.8791702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T17:26:50.9706782Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:26:51.0013237Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T17:26:51.0016630Z ** R 2021-05-17T17:26:51.0041222Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:51.2983385Z ** help 2021-05-17T17:26:51.3255729Z *** installing help indices 2021-05-17T17:26:51.3442021Z ** building package indices 2021-05-17T17:26:51.5694105Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:51.7750016Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:26:51.7969743Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:52.0108972Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:52.0117531Z * DONE (base64enc) 2021-05-17T17:26:52.2753969Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T17:26:52.2772123Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:52.2803381Z ** using staged installation 2021-05-17T17:26:52.2944285Z ** R 2021-05-17T17:26:52.3017704Z ** inst 2021-05-17T17:26:52.3027651Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:52.8596286Z ** help 2021-05-17T17:26:52.9046871Z *** installing help indices 2021-05-17T17:26:52.9447602Z ** building package indices 2021-05-17T17:26:53.2035547Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:53.4148149Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:53.6531663Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:53.6534342Z * DONE (R.methodsS3) 2021-05-17T17:26:53.9240314Z * installing *source* package ‘abind’ ... 2021-05-17T17:26:53.9253414Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:53.9286414Z ** using staged installation 2021-05-17T17:26:53.9407159Z ** R 2021-05-17T17:26:53.9463885Z ** inst 2021-05-17T17:26:53.9472180Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:54.5733037Z ** help 2021-05-17T17:26:54.6068238Z *** installing help indices 2021-05-17T17:26:54.6324662Z ** building package indices 2021-05-17T17:26:54.8598115Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:55.0611453Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:55.2868133Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:55.2877075Z * DONE (abind) 2021-05-17T17:26:55.5196225Z * installing *source* package ‘bitops’ ... 2021-05-17T17:26:55.5206151Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:55.5252909Z ** using staged installation 2021-05-17T17:26:55.5385084Z ** libs 2021-05-17T17:26:55.5522769Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T17:26:55.7606545Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T17:26:55.8295471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:26:55.8827201Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:26:55.9023134Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T17:26:55.9050663Z ** R 2021-05-17T17:26:55.9072138Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:56.1642014Z ** help 2021-05-17T17:26:56.1927972Z *** installing help indices 2021-05-17T17:26:56.2141806Z ** building package indices 2021-05-17T17:26:56.4477483Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:56.6479548Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:26:56.6709154Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:56.8781435Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:56.8786677Z * DONE (bitops) 2021-05-17T17:26:57.1470692Z * installing *source* package ‘tinytex’ ... 2021-05-17T17:26:57.1489409Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:57.1530802Z ** using staged installation 2021-05-17T17:26:57.1757185Z ** R 2021-05-17T17:26:57.1844102Z ** inst 2021-05-17T17:26:57.1853029Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:26:57.9599543Z ** help 2021-05-17T17:26:57.9966452Z *** installing help indices 2021-05-17T17:26:58.0343140Z ** building package indices 2021-05-17T17:26:58.2917212Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:26:58.5230641Z ** testing if installed package can be loaded from final location 2021-05-17T17:26:58.7668684Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:26:58.7679058Z * DONE (tinytex) 2021-05-17T17:26:59.2814755Z * installing *source* package ‘matrixStats’ ... 2021-05-17T17:26:59.2947647Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T17:26:59.2977434Z ** using staged installation 2021-05-17T17:26:59.3141279Z ** libs 2021-05-17T17:26:59.3207856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T17:26:59.3694121Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T17:26:59.4711881Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T17:26:59.5998695Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T17:26:59.7077382Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T17:26:59.8630204Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T17:27:01.4272935Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T17:27:01.8743581Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T17:27:03.5688254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T17:27:03.8140798Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T17:27:03.8861524Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T17:27:04.1257512Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T17:27:04.2895116Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T17:27:04.4723740Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T17:27:04.5565631Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T17:27:06.2640713Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T17:27:07.4828304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T17:27:08.6459351Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T17:27:09.6404940Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T17:27:10.6214297Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T17:27:12.9056442Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T17:27:13.0684730Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T17:27:14.2025091Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T17:27:14.8695677Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T17:27:15.8973725Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T17:27:16.3687414Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T17:27:18.1421589Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T17:27:31.8088605Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T17:27:32.4653828Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T17:27:33.2130953Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T17:27:33.3543625Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T17:27:33.4855254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T17:27:33.7661276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T17:27:33.9580387Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T17:27:34.4328048Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T17:28:34.5418309Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:28:34.6519065Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T17:28:34.6658402Z ** R 2021-05-17T17:28:34.6902681Z ** inst 2021-05-17T17:28:34.6954808Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:28:36.2373908Z ** help 2021-05-17T17:28:36.3844325Z *** installing help indices 2021-05-17T17:28:36.4818147Z ** building package indices 2021-05-17T17:28:36.8056376Z ** installing vignettes 2021-05-17T17:28:36.8136077Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:28:37.0361648Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:28:37.0636461Z ** testing if installed package can be loaded from final location 2021-05-17T17:28:37.2908999Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:28:37.2930913Z * DONE (matrixStats) 2021-05-17T17:28:37.7415382Z * installing *source* package ‘R.oo’ ... 2021-05-17T17:28:37.7498293Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T17:28:37.7551110Z ** using staged installation 2021-05-17T17:28:37.7704990Z ** R 2021-05-17T17:28:37.8074790Z ** inst 2021-05-17T17:28:37.8091857Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:28:40.9588689Z ** help 2021-05-17T17:28:41.5215350Z *** installing help indices 2021-05-17T17:28:41.9117543Z ** building package indices 2021-05-17T17:28:42.4371605Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:28:42.6837963Z ** testing if installed package can be loaded from final location 2021-05-17T17:28:43.0085647Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:28:43.0149502Z * DONE (R.oo) 2021-05-17T17:28:43.3357462Z * installing *source* package ‘htmltools’ ... 2021-05-17T17:28:43.3385324Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T17:28:43.3419429Z ** using staged installation 2021-05-17T17:28:43.3612056Z ** libs 2021-05-17T17:28:43.3666587Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T17:28:43.4208394Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T17:28:43.5476960Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T17:28:43.5812997Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T17:28:43.5814398Z ** R 2021-05-17T17:28:43.5969245Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:28:45.1962913Z ** help 2021-05-17T17:28:45.2860797Z *** installing help indices 2021-05-17T17:28:45.3506832Z ** building package indices 2021-05-17T17:28:45.6508586Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:28:45.8895415Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T17:28:45.9142092Z ** testing if installed package can be loaded from final location 2021-05-17T17:28:46.1997003Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:28:46.2017549Z * DONE (htmltools) 2021-05-17T17:28:46.8613499Z * installing *source* package ‘oro.nifti’ ... 2021-05-17T17:28:46.8818885Z ** package ‘oro.nifti’ successfully unpacked and MD5 sums checked 2021-05-17T17:28:46.8852163Z ** using staged installation 2021-05-17T17:28:46.9080516Z ** R 2021-05-17T17:28:46.9606243Z ** demo 2021-05-17T17:28:46.9614030Z ** inst 2021-05-17T17:28:46.9697941Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:28:54.4123978Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-17T17:28:54.4126030Z ** help 2021-05-17T17:28:54.8305971Z *** installing help indices 2021-05-17T17:28:55.1425270Z ** building package indices 2021-05-17T17:28:55.6110819Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:28:56.2575711Z ** testing if installed package can be loaded from final location 2021-05-17T17:28:57.0517006Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:28:57.0605724Z * DONE (oro.nifti) 2021-05-17T17:28:57.6791883Z * installing *source* package ‘R.utils’ ... 2021-05-17T17:28:57.6941500Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T17:28:57.6973516Z ** using staged installation 2021-05-17T17:28:57.7135871Z ** R 2021-05-17T17:28:57.7943664Z ** inst 2021-05-17T17:28:57.7957123Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:29:04.4534050Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T17:29:04.4535931Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T17:29:04.4540957Z ** help 2021-05-17T17:29:05.4232713Z *** installing help indices 2021-05-17T17:29:05.9395302Z ** building package indices 2021-05-17T17:29:06.7560337Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:29:07.0342023Z ** testing if installed package can be loaded from final location 2021-05-17T17:29:07.4908193Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:29:07.5000377Z * DONE (R.utils) 2021-05-17T17:29:08.3847857Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T17:29:08.4170213Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T17:29:08.4206992Z ** using staged installation 2021-05-17T17:29:08.4521957Z ** R 2021-05-17T17:29:08.4952233Z ** inst 2021-05-17T17:29:08.5192284Z ** byte-compile and prepare package for lazy loading 2021-05-17T17:29:12.2424176Z ** help 2021-05-17T17:29:12.4673904Z *** installing help indices 2021-05-17T17:29:12.6377859Z *** copying figures 2021-05-17T17:29:12.6380083Z ** building package indices 2021-05-17T17:29:12.9795169Z ** installing vignettes 2021-05-17T17:29:12.9878145Z ** testing if installed package can be loaded from temporary location 2021-05-17T17:29:13.2660599Z ** testing if installed package can be loaded from final location 2021-05-17T17:29:13.6211612Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T17:29:13.6264387Z * DONE (rmarkdown) 2021-05-17T17:29:13.6522457Z 2021-05-17T17:29:13.6526377Z The downloaded source packages are in 2021-05-17T17:29:13.6527975Z ‘/tmp/RtmpWCL5H0/downloaded_packages’ 2021-05-17T17:29:13.7617075Z Skipping install of 'MNITemplate' from a github remote, the SHA1 (ef27207f) has not changed since last install. 2021-05-17T17:29:13.7618849Z Use `force = TRUE` to force installation 2021-05-17T17:29:13.8366598Z Skipping install of 'neurobase' from a github remote, the SHA1 (1d4b1729) has not changed since last install. 2021-05-17T17:29:13.8368381Z Use `force = TRUE` to force installation 2021-05-17T17:29:28.8131830Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-17T17:29:28.8133544Z Use `force = TRUE` to force installation 2021-05-17T17:29:28.8143925Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-17T17:29:28.8145929Z Use `force = TRUE` to force installation 2021-05-17T17:29:28.8339799Z ##[group]Run options(width = 100) 2021-05-17T17:29:28.8340375Z options(width = 100) 2021-05-17T17:29:28.8340996Z pkgs <- installed.packages()[, "Package"] 2021-05-17T17:29:28.8341749Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-17T17:29:28.8350738Z shell: /usr/local/bin/Rscript {0} 2021-05-17T17:29:28.8351186Z env: 2021-05-17T17:29:28.8351673Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:29:28.8352187Z TIC_DEPLOY_KEY: 2021-05-17T17:29:28.8353079Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:29:28.8354750Z GITHUB_PAT: *** 2021-05-17T17:29:28.8355732Z COVERALLS_TOKEN: *** 2021-05-17T17:29:28.8356261Z continue-on-error: true 2021-05-17T17:29:28.8356785Z VDIFFR_RUN_TESTS: 2021-05-17T17:29:28.8357304Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:29:28.8357796Z TZ: UTC 2021-05-17T17:29:28.8358229Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:29:28.8358719Z NOT_CRAN: true 2021-05-17T17:29:28.8359133Z ##[endgroup] 2021-05-17T17:29:29.3528740Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-17T17:29:29.3530486Z setting value 2021-05-17T17:29:29.3532143Z version R Under development (unstable) (2021-05-15 r80301) 2021-05-17T17:29:29.3533354Z os Ubuntu 20.04.2 LTS 2021-05-17T17:29:29.3534692Z system x86_64, linux-gnu 2021-05-17T17:29:29.3535715Z ui X11 2021-05-17T17:29:29.3536696Z language (EN) 2021-05-17T17:29:29.3538014Z collate C.UTF-8 2021-05-17T17:29:29.3539345Z ctype C.UTF-8 2021-05-17T17:29:29.3540323Z tz UTC 2021-05-17T17:29:29.3541586Z date 2021-05-17 2021-05-17T17:29:29.3542140Z 2021-05-17T17:29:29.3543683Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-17T17:29:29.3544982Z package * version 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0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3613976Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3614905Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3615832Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3616741Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3617638Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3618595Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3619553Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3620465Z methods * 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3621880Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3622783Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3623870Z MNITemplate 1.0.0 2021-05-17 [1] Github (neuroconductor/MNITemplate@ef27207) 2021-05-17T17:29:29.3625115Z neurobase 1.30.1 2021-05-17 [1] Github (neuroconductor/neurobase@1d4b172) 2021-05-17T17:29:29.3626173Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3627067Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3627991Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3628903Z oro.nifti 0.11.0 2020-09-08 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3629842Z parallel 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3630772Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3631687Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3632631Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3633565Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3634475Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3635428Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3636562Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3637454Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3638348Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3639281Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3640188Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3641088Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3641981Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3642874Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3643891Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3644817Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3645737Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3646671Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3647566Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3648464Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3649388Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3650532Z RNifti 1.3.1 2021-05-17 [1] Github (neuroconductor/RNifti@929106d) 2021-05-17T17:29:29.3652701Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3653732Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3654660Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3655614Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3656562Z rticles 0.19 2021-03-04 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3657482Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3662074Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3664169Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3665093Z splines 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3666011Z stats * 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3666937Z stats4 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3667843Z stringi 1.6.2 2021-05-17 [1] CRAN (R 4.2.0) 2021-05-17T17:29:29.3668777Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3669713Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-17T17:29:29.3670609Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3671584Z sysreqs 1.0.0.9000 2021-05-17 [1] Github (r-hub/sysreqs@f068afa) 2021-05-17T17:29:29.3672542Z tcltk 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3673475Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3674413Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3675376Z tic 0.10.0 2021-05-17 [1] Github (ropensci/tic@3b4dfb8) 2021-05-17T17:29:29.3676603Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3677549Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3678800Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3679823Z tools 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3680750Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3681647Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3682538Z utils * 4.2.0 2021-05-16 [2] local 2021-05-17T17:29:29.3683447Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3684467Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3685475Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3686398Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3687279Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3688171Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3689074Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3690116Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3691041Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-17T17:29:29.3691394Z 2021-05-17T17:29:29.3691897Z [1] /home/runner/work/_temp/Library 2021-05-17T17:29:29.3692827Z [2] /opt/R/devel/lib/R/library 2021-05-17T17:29:29.3732722Z ##[group]Run Rscript -e 'tic::script()' 2021-05-17T17:29:29.3733366Z Rscript -e 'tic::script()' 2021-05-17T17:29:29.3733847Z ls -l check 2021-05-17T17:29:29.3786215Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T17:29:29.3786769Z env: 2021-05-17T17:29:29.3787254Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:29:29.3787776Z TIC_DEPLOY_KEY: 2021-05-17T17:29:29.3788637Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:29:29.3790490Z GITHUB_PAT: *** 2021-05-17T17:29:29.3791381Z COVERALLS_TOKEN: *** 2021-05-17T17:29:29.3791908Z continue-on-error: true 2021-05-17T17:29:29.3792427Z VDIFFR_RUN_TESTS: 2021-05-17T17:29:29.3792961Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:29:29.3793438Z TZ: UTC 2021-05-17T17:29:29.3793867Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:29:29.3794308Z NOT_CRAN: true 2021-05-17T17:29:29.3794722Z ##[endgroup] 2021-05-17T17:29:29.7040080Z ✔ Loading tic stage configuration from tic.R 2021-05-17T17:29:29.8473926Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-17T17:29:29.8476369Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-17T17:29:29.8477968Z timeout = Inf, check_dir = "check") 2021-05-17T17:29:29.9267332Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-17T17:29:30.1758594Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-17T17:29:30.1903155Z * preparing ‘alvin’: 2021-05-17T17:29:30.1995867Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:29:30.2907982Z * installing the package to build vignettes 2021-05-17T17:29:35.4182581Z * creating vignettes ... OK 2021-05-17T17:29:35.4492570Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T17:29:35.4494138Z * checking for empty or unneeded directories 2021-05-17T17:29:35.4507356Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T17:29:35.4604685Z * building ‘alvin_0.3.0.tar.gz’ 2021-05-17T17:29:35.4927613Z 2021-05-17T17:29:35.6475549Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-17T17:29:35.8932229Z * using log directory ‘/home/runner/work/alvin/alvin/check/alvin.Rcheck’ 2021-05-17T17:29:35.8944065Z * using R Under development (unstable) (2021-05-15 r80301) 2021-05-17T17:29:35.8945404Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-17T17:29:35.8946492Z * using session charset: UTF-8 2021-05-17T17:29:35.9357313Z * using option ‘--as-cran’ 2021-05-17T17:29:35.9381725Z * checking for file ‘alvin/DESCRIPTION’ ... OK 2021-05-17T17:29:35.9383054Z * checking extension type ... Package 2021-05-17T17:29:35.9393246Z * this is package ‘alvin’ version ‘0.3.0’ 2021-05-17T17:29:35.9394574Z * package encoding: UTF-8 2021-05-17T17:29:35.9413577Z * checking package namespace information ... OK 2021-05-17T17:29:55.3986956Z * checking package dependencies ... OK 2021-05-17T17:29:55.4010890Z * checking if this is a source package ... OK 2021-05-17T17:29:55.4012037Z * checking if there is a namespace ... OK 2021-05-17T17:29:55.5703547Z * checking for executable files ... OK 2021-05-17T17:29:55.5704941Z * checking for hidden files and directories ... OK 2021-05-17T17:29:55.5705928Z * checking for portable file names ... OK 2021-05-17T17:29:55.5709492Z * checking for sufficient/correct file permissions ... OK 2021-05-17T17:29:55.5728586Z * checking serialization versions ... OK 2021-05-17T17:29:58.5890726Z * checking whether package ‘alvin’ can be installed ... OK 2021-05-17T17:29:58.5998066Z * checking installed package size ... OK 2021-05-17T17:29:58.6751469Z * checking package directory ... OK 2021-05-17T17:29:58.6752280Z * checking for future file timestamps ... OK 2021-05-17T17:29:58.6753556Z * checking ‘build’ directory ... OK 2021-05-17T17:29:58.8581715Z * checking DESCRIPTION meta-information ... OK 2021-05-17T17:29:58.8583291Z * checking top-level files ... OK 2021-05-17T17:29:58.8584614Z * checking for left-over files ... OK 2021-05-17T17:29:59.0421335Z * checking index information ... OK 2021-05-17T17:29:59.3030236Z * checking package subdirectories ... OK 2021-05-17T17:29:59.3552794Z * checking R files for non-ASCII characters ... OK 2021-05-17T17:29:59.4113369Z * checking R files for syntax errors ... OK 2021-05-17T17:30:00.2490982Z * checking whether the package can be loaded ... OK 2021-05-17T17:30:01.0562296Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-17T17:30:01.8448992Z * checking whether the package can be unloaded cleanly ... OK 2021-05-17T17:30:02.6035512Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-17T17:30:03.3442097Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-17T17:30:04.1404023Z * checking loading without being on the library search path ... OK 2021-05-17T17:30:04.9411647Z * checking dependencies in R code ... OK 2021-05-17T17:30:06.1291809Z * checking S3 generic/method consistency ... OK 2021-05-17T17:30:06.8521264Z * checking replacement functions ... OK 2021-05-17T17:30:07.5811630Z * checking foreign function calls ... OK 2021-05-17T17:30:11.9777549Z * checking R code for possible problems ... OK 2021-05-17T17:30:12.1838153Z * checking Rd files ... OK 2021-05-17T17:30:12.2400571Z * checking Rd metadata ... OK 2021-05-17T17:30:12.3043783Z * checking Rd line widths ... OK 2021-05-17T17:30:12.4169290Z * checking Rd cross-references ... OK 2021-05-17T17:30:13.1811846Z * checking for missing documentation entries ... OK 2021-05-17T17:30:15.4497892Z * checking for code/documentation mismatches ... OK 2021-05-17T17:30:16.7691762Z * checking Rd \usage sections ... OK 2021-05-17T17:30:16.8397506Z * checking Rd contents ... OK 2021-05-17T17:30:16.9285792Z * checking for unstated dependencies in examples ... OK 2021-05-17T17:30:16.9324679Z * checking installed files from ‘inst/doc’ ... OK 2021-05-17T17:30:16.9357644Z * checking files in ‘vignettes’ ... OK 2021-05-17T17:30:18.3282083Z * checking examples ... ERROR 2021-05-17T17:30:18.3287782Z ##[error]Running examples in ‘alvin-Ex.R’ failed 2021-05-17T17:30:18.3301396Z The error most likely occurred in: 2021-05-17T17:30:18.3301803Z 2021-05-17T17:30:18.3302584Z > base::assign(".ptime", proc.time(), pos = "CheckExEnv") 2021-05-17T17:30:18.3303233Z > ### Name: alvin_mask 2021-05-17T17:30:18.3303743Z > ### Title: ALVIN Mask 2021-05-17T17:30:18.3304309Z > ### Aliases: alvin_mask alvin_image 2021-05-17T17:30:18.3304768Z > 2021-05-17T17:30:18.3305166Z > ### ** Examples 2021-05-17T17:30:18.3305552Z > 2021-05-17T17:30:18.3305942Z > alvin_mask() 2021-05-17T17:30:18.3306733Z [1] "/home/runner/work/alvin/alvin/check/alvin.Rcheck/alvin/ALVIN_mask_v1.nii.gz" 2021-05-17T17:30:18.3307445Z > alvin_mask(mm = 1) 2021-05-17T17:30:18.3308257Z [1] "/home/runner/work/alvin/alvin/check/alvin.Rcheck/alvin/ALVIN_mask_v1_1mm.nii.gz" 2021-05-17T17:30:18.3308979Z > alvin_mask(mm = 0.5) 2021-05-17T17:30:18.3309831Z [1] "/home/runner/work/alvin/alvin/check/alvin.Rcheck/alvin/ALVIN_mask_v1_0.5mm.nii.gz" 2021-05-17T17:30:18.3310535Z > alvin_image() 2021-05-17T17:30:18.3311394Z NIfTI-1 format 2021-05-17T17:30:18.3311886Z Type : nifti 2021-05-17T17:30:18.3312377Z Data Type : 4 (INT16) 2021-05-17T17:30:18.3312883Z Bits per Pixel : 16 2021-05-17T17:30:18.3313405Z Slice Code : 0 (Unknown) 2021-05-17T17:30:18.3313945Z Intent Code : 0 (None) 2021-05-17T17:30:18.3314517Z Qform Code : 2 (Aligned_Anat) 2021-05-17T17:30:18.3315100Z Sform Code : 2 (Aligned_Anat) 2021-05-17T17:30:18.3315667Z Dimension : 91 x 109 x 91 2021-05-17T17:30:18.3316196Z Pixel Dimension : 2 x 2 x 2 2021-05-17T17:30:18.3316712Z Voxel Units : mm 2021-05-17T17:30:18.3317192Z Time Units : sec 2021-05-17T17:30:18.3317724Z > testthat::expect_equal( 2021-05-17T17:30:18.3318342Z + dim(alvin_image(1, read_data = FALSE)), 2021-05-17T17:30:18.3318839Z + c(182L, 218L, 182L)) 2021-05-17T17:30:18.3319712Z Warning in datatyper(nim, warn = warn) : 2021-05-17T17:30:18.3320506Z Need to change bitpix and datatype to FLOAT32 due to NAs 2021-05-17T17:30:18.3322210Z ##[error]Error in datatyper(nim, warn = warn) : object 'nim' not found 2021-05-17T17:30:18.3324195Z Calls: ... eval_bare -> alvin_image -> -> datatyper 2021-05-17T17:30:18.3324890Z Execution halted 2021-05-17T17:30:18.4034266Z * checking for unstated dependencies in ‘tests’ ... OK 2021-05-17T17:30:18.5926457Z * checking tests ... 2021-05-17T17:30:19.8325237Z Running ‘testthat.R’ 2021-05-17T17:30:19.8373282Z OK 2021-05-17T17:30:20.0291584Z * checking for unstated dependencies in vignettes ... OK 2021-05-17T17:30:20.0624003Z * checking package vignettes in ‘inst/doc’ ... OK 2021-05-17T17:30:22.1812403Z * checking re-building of vignette outputs ... OK 2021-05-17T17:30:23.9652801Z * checking PDF version of manual ... OK 2021-05-17T17:30:23.9669812Z * checking for non-standard things in the check directory ... OK 2021-05-17T17:30:23.9671031Z * checking for detritus in the temp directory ... OK 2021-05-17T17:30:23.9671804Z * DONE 2021-05-17T17:30:23.9672400Z 2021-05-17T17:30:23.9672943Z Status: 1 ERROR 2021-05-17T17:30:23.9678578Z See 2021-05-17T17:30:23.9680010Z ‘/home/runner/work/alvin/alvin/check/alvin.Rcheck/00check.log’ 2021-05-17T17:30:23.9680811Z for details. 2021-05-17T17:30:23.9681224Z 2021-05-17T17:30:23.9880079Z ── R CMD check results ──────────────────────────────────────── alvin 0.3.0 ──── 2021-05-17T17:30:23.9899526Z Duration: 48.5s 2021-05-17T17:30:23.9900106Z 2021-05-17T17:30:23.9926771Z ❯ checking examples ... ERROR 2021-05-17T17:30:23.9928857Z ##[error] Running examples in ‘alvin-Ex.R’ failed 2021-05-17T17:30:23.9935442Z The error most likely occurred in: 2021-05-17T17:30:23.9936103Z 2021-05-17T17:30:23.9936971Z > base::assign(".ptime", proc.time(), pos = "CheckExEnv") 2021-05-17T17:30:23.9937787Z > ### Name: alvin_mask 2021-05-17T17:30:23.9938425Z > ### Title: ALVIN Mask 2021-05-17T17:30:23.9939123Z > ### Aliases: alvin_mask alvin_image 2021-05-17T17:30:23.9939743Z > 2021-05-17T17:30:23.9940341Z > ### ** Examples 2021-05-17T17:30:23.9940887Z > 2021-05-17T17:30:23.9941426Z > alvin_mask() 2021-05-17T17:30:23.9942395Z [1] "/home/runner/work/alvin/alvin/check/alvin.Rcheck/alvin/ALVIN_mask_v1.nii.gz" 2021-05-17T17:30:23.9943256Z > alvin_mask(mm = 1) 2021-05-17T17:30:23.9944206Z [1] "/home/runner/work/alvin/alvin/check/alvin.Rcheck/alvin/ALVIN_mask_v1_1mm.nii.gz" 2021-05-17T17:30:23.9945055Z > alvin_mask(mm = 0.5) 2021-05-17T17:30:23.9946015Z [1] "/home/runner/work/alvin/alvin/check/alvin.Rcheck/alvin/ALVIN_mask_v1_0.5mm.nii.gz" 2021-05-17T17:30:23.9946854Z > alvin_image() 2021-05-17T17:30:23.9947794Z NIfTI-1 format 2021-05-17T17:30:23.9948417Z Type : nifti 2021-05-17T17:30:23.9949045Z Data Type : 4 (INT16) 2021-05-17T17:30:23.9949685Z Bits per Pixel : 16 2021-05-17T17:30:23.9950334Z Slice Code : 0 (Unknown) 2021-05-17T17:30:23.9950986Z Intent Code : 0 (None) 2021-05-17T17:30:23.9951729Z Qform Code : 2 (Aligned_Anat) 2021-05-17T17:30:23.9952457Z Sform Code : 2 (Aligned_Anat) 2021-05-17T17:30:23.9953142Z Dimension : 91 x 109 x 91 2021-05-17T17:30:23.9953819Z Pixel Dimension : 2 x 2 x 2 2021-05-17T17:30:23.9954440Z Voxel Units : mm 2021-05-17T17:30:23.9955033Z Time Units : sec 2021-05-17T17:30:23.9955758Z > testthat::expect_equal( 2021-05-17T17:30:23.9956507Z + dim(alvin_image(1, read_data = FALSE)), 2021-05-17T17:30:23.9957149Z + c(182L, 218L, 182L)) 2021-05-17T17:30:23.9957847Z Warning in datatyper(nim, warn = warn) : 2021-05-17T17:30:23.9958738Z Need to change bitpix and datatype to FLOAT32 due to NAs 2021-05-17T17:30:23.9959911Z Error in datatyper(nim, warn = warn) : object 'nim' not found 2021-05-17T17:30:23.9961223Z Calls: ... eval_bare -> alvin_image -> -> datatyper 2021-05-17T17:30:23.9962048Z Execution halted 2021-05-17T17:30:23.9962478Z 2021-05-17T17:30:23.9963577Z 1 error ✖ | 0 warnings ✔ | 0 notes ✔ 2021-05-17T17:30:24.0151541Z ##[error]Error: A step failed in stage "script": script. 2021-05-17T17:30:24.0153442Z Execution halted 2021-05-17T17:30:24.0153971Z 2021-05-17T17:30:24.0154686Z Errors found in rcmdcheck::rcmdcheck(). 2021-05-17T17:30:24.0155246Z Backtrace: 2021-05-17T17:30:24.0155734Z 1. tic::script() 2021-05-17T17:30:24.0156374Z 2. tic::run_stage("script", stages = stages) 2021-05-17T17:30:24.0156918Z 3. stage$run_all() 2021-05-17T17:30:24.0157436Z 4. private$run_one(step) 2021-05-17T17:30:24.0157921Z 11. step$run() 2021-05-17T17:30:24.0158612Z 12. tic:::stopc("Errors found in rcmdcheck::rcmdcheck().") 2021-05-17T17:30:24.0250769Z ##[error]Process completed with exit code 1. 2021-05-17T17:30:24.0289582Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T17:30:24.0290613Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T17:30:24.0337845Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T17:30:24.0338479Z env: 2021-05-17T17:30:24.0339092Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:30:24.0339598Z TIC_DEPLOY_KEY: 2021-05-17T17:30:24.0340487Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:30:24.0342324Z GITHUB_PAT: *** 2021-05-17T17:30:24.0343202Z COVERALLS_TOKEN: *** 2021-05-17T17:30:24.0343745Z continue-on-error: true 2021-05-17T17:30:24.0344254Z VDIFFR_RUN_TESTS: 2021-05-17T17:30:24.0344788Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:30:24.0345280Z TZ: UTC 2021-05-17T17:30:24.0345690Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:30:24.0346148Z NOT_CRAN: true 2021-05-17T17:30:24.0346553Z ##[endgroup] 2021-05-17T17:30:24.0454932Z 2021-05-17T17:30:24.0456526Z R Under development (unstable) (2021-05-15 r80301) -- "Unsuffered Consequences" 2021-05-17T17:30:24.0457547Z Copyright (C) 2021 The R Foundation for Statistical Computing 2021-05-17T17:30:24.0458504Z Platform: x86_64-pc-linux-gnu (64-bit) 2021-05-17T17:30:24.0458895Z 2021-05-17T17:30:24.0459564Z R is free software and comes with ABSOLUTELY NO WARRANTY. 2021-05-17T17:30:24.0460459Z You are welcome to redistribute it under certain conditions. 2021-05-17T17:30:24.0461541Z Type 'license()' or 'licence()' for distribution details. 2021-05-17T17:30:24.0462000Z 2021-05-17T17:30:24.0462636Z R is a collaborative project with many contributors. 2021-05-17T17:30:24.0463620Z Type 'contributors()' for more information and 2021-05-17T17:30:24.0464636Z 'citation()' on how to cite R or R packages in publications. 2021-05-17T17:30:24.0465087Z 2021-05-17T17:30:24.0465885Z Type 'demo()' for some demos, 'help()' for on-line help, or 2021-05-17T17:30:24.0466884Z 'help.start()' for an HTML browser interface to help. 2021-05-17T17:30:24.0467630Z Type 'q()' to quit R. 2021-05-17T17:30:24.0467924Z 2021-05-17T17:30:24.0468360Z > library(testthat) 2021-05-17T17:30:24.0468832Z > library(alvin) 2021-05-17T17:30:24.0469224Z > 2021-05-17T17:30:24.0469639Z > test_check("alvin") 2021-05-17T17:30:24.0470192Z [ FAIL 0 | WARN 0 | SKIP 0 | PASS 1 ] 2021-05-17T17:30:24.0470636Z > 2021-05-17T17:30:24.0471027Z > proc.time() 2021-05-17T17:30:24.0471539Z user system elapsed 2021-05-17T17:30:24.0472026Z 1.070 0.145 1.202 2021-05-17T17:30:24.0533460Z ##[group]Run actions/upload-artifact@master 2021-05-17T17:30:24.0534008Z with: 2021-05-17T17:30:24.0534510Z name: Linux-rdevel-results 2021-05-17T17:30:24.0535042Z path: check 2021-05-17T17:30:24.0535512Z if-no-files-found: warn 2021-05-17T17:30:24.0535982Z env: 2021-05-17T17:30:24.0536444Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T17:30:24.0536967Z TIC_DEPLOY_KEY: 2021-05-17T17:30:24.0537851Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T17:30:24.0539264Z GITHUB_PAT: *** 2021-05-17T17:30:24.0540150Z COVERALLS_TOKEN: *** 2021-05-17T17:30:24.0540692Z continue-on-error: true 2021-05-17T17:30:24.0541200Z VDIFFR_RUN_TESTS: 2021-05-17T17:30:24.0541731Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T17:30:24.0542221Z TZ: UTC 2021-05-17T17:30:24.0542649Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T17:30:24.0543110Z NOT_CRAN: true 2021-05-17T17:30:24.0543510Z ##[endgroup] 2021-05-17T17:30:24.1651663Z With the provided path, there will be 65 files uploaded 2021-05-17T17:30:30.7564774Z Total size of all the files uploaded is 482896 bytes 2021-05-17T17:30:30.8059368Z Finished uploading artifact Linux-rdevel-results. Reported size is 482896 bytes. There were 0 items that failed to upload 2021-05-17T17:30:30.8062279Z Artifact Linux-rdevel-results has been successfully uploaded! 2021-05-17T17:30:30.8245338Z Post job cleanup. 2021-05-17T17:30:30.9525599Z [command]/usr/bin/git version 2021-05-17T17:30:30.9611898Z git version 2.31.1 2021-05-17T17:30:30.9675336Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T17:30:30.9738112Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T17:30:31.0023821Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T17:30:31.0074638Z http.https://github.com/.extraheader 2021-05-17T17:30:31.0098428Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-17T17:30:31.0157668Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T17:30:31.0496860Z Cleaning up orphan processes