2021-05-17T21:32:25.5586073Z ##[section]Starting: Request a runner to run this job 2021-05-17T21:32:26.0251965Z Can't find any online and idle self-hosted runner in current repository that matches the required labels: 'ubuntu-20.04' 2021-05-17T21:32:26.0843975Z Can't find any online and idle self-hosted runner in current repository's organization/enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T21:32:26.1673590Z Found online and idle hosted runner in current repository's enterprise account that matches the required labels: 'ubuntu-20.04' 2021-05-17T21:32:26.2967475Z ##[section]Finishing: Request a runner to run this job 2021-05-17T21:32:34.6634223Z Current runner version: '2.278.0' 2021-05-17T21:32:34.6664271Z ##[group]Operating System 2021-05-17T21:32:34.6665404Z Ubuntu 2021-05-17T21:32:34.6665864Z 20.04.2 2021-05-17T21:32:34.6666351Z LTS 2021-05-17T21:32:34.6667049Z ##[endgroup] 2021-05-17T21:32:34.6667782Z ##[group]Virtual Environment 2021-05-17T21:32:34.6668531Z Environment: ubuntu-20.04 2021-05-17T21:32:34.6669092Z Version: 20210510.0 2021-05-17T21:32:34.6670164Z Included Software: https://github.com/actions/virtual-environments/blob/ubuntu20/20210510.0/images/linux/Ubuntu2004-README.md 2021-05-17T21:32:34.6671624Z Image Release: https://github.com/actions/virtual-environments/releases/tag/ubuntu20%2F20210510.0 2021-05-17T21:32:34.6672525Z ##[endgroup] 2021-05-17T21:32:34.6674570Z ##[group]GITHUB_TOKEN Permissions 2021-05-17T21:32:34.6676078Z Actions: write 2021-05-17T21:32:34.6676634Z Checks: write 2021-05-17T21:32:34.6677141Z Contents: write 2021-05-17T21:32:34.6677758Z Deployments: write 2021-05-17T21:32:34.6678606Z Issues: write 2021-05-17T21:32:34.6679189Z Metadata: read 2021-05-17T21:32:34.6679780Z Packages: write 2021-05-17T21:32:34.6680536Z PullRequests: write 2021-05-17T21:32:34.6681205Z RepositoryProjects: write 2021-05-17T21:32:34.6681833Z SecurityEvents: write 2021-05-17T21:32:34.6682423Z Statuses: write 2021-05-17T21:32:34.6683266Z ##[endgroup] 2021-05-17T21:32:34.6686996Z Prepare workflow directory 2021-05-17T21:32:34.7859955Z Prepare all required actions 2021-05-17T21:32:34.7873121Z Getting action download info 2021-05-17T21:32:35.2061909Z Download action repository 'actions/checkout@v2' 2021-05-17T21:32:36.9669605Z Download action repository 'r-lib/actions@master' 2021-05-17T21:32:37.7677766Z Download action repository 'adigherman/actions@master' 2021-05-17T21:32:39.9687193Z Download action repository 'msys2/setup-msys2@v2' 2021-05-17T21:32:40.2794736Z Download action repository 'actions/cache@v1' 2021-05-17T21:32:40.5920131Z Download action repository 'actions/upload-artifact@master' 2021-05-17T21:32:40.9023331Z Download action repository 'actions/upload-release-asset@v1.0.1' 2021-05-17T21:32:41.3674270Z ##[group]Run actions/checkout@v2 2021-05-17T21:32:41.3674897Z with: 2021-05-17T21:32:41.3675332Z repository: neuroconductor/pbj 2021-05-17T21:32:41.3676284Z token: *** 2021-05-17T21:32:41.3676636Z ssh-strict: true 2021-05-17T21:32:41.3677106Z persist-credentials: true 2021-05-17T21:32:41.3677716Z clean: true 2021-05-17T21:32:41.3678094Z fetch-depth: 1 2021-05-17T21:32:41.3678464Z lfs: false 2021-05-17T21:32:41.3678819Z submodules: false 2021-05-17T21:32:41.3679184Z env: 2021-05-17T21:32:41.3679591Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:32:41.3680229Z TIC_DEPLOY_KEY: 2021-05-17T21:32:41.3681226Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:32:41.3682474Z GITHUB_PAT: *** 2021-05-17T21:32:41.3683299Z COVERALLS_TOKEN: *** 2021-05-17T21:32:41.3683965Z continue-on-error: true 2021-05-17T21:32:41.3684586Z VDIFFR_RUN_TESTS: 2021-05-17T21:32:41.3684968Z ##[endgroup] 2021-05-17T21:32:41.6247497Z Syncing repository: neuroconductor/pbj 2021-05-17T21:32:41.6270348Z ##[group]Getting Git version info 2021-05-17T21:32:41.6271440Z Working directory is '/home/runner/work/pbj/pbj' 2021-05-17T21:32:41.6334638Z [command]/usr/bin/git version 2021-05-17T21:32:41.6503483Z git version 2.31.1 2021-05-17T21:32:41.6505838Z ##[endgroup] 2021-05-17T21:32:41.6506967Z Deleting the contents of '/home/runner/work/pbj/pbj' 2021-05-17T21:32:41.6513831Z ##[group]Initializing the repository 2021-05-17T21:32:41.6519324Z [command]/usr/bin/git init /home/runner/work/pbj/pbj 2021-05-17T21:32:41.6609039Z hint: Using 'master' as the name for the initial branch. This default branch name 2021-05-17T21:32:41.6610284Z hint: is subject to change. To configure the initial branch name to use in all 2021-05-17T21:32:41.6611620Z hint: of your new repositories, which will suppress this warning, call: 2021-05-17T21:32:41.6612901Z hint: 2021-05-17T21:32:41.6614769Z hint: git config --global init.defaultBranch 2021-05-17T21:32:41.6615675Z hint: 2021-05-17T21:32:41.6616615Z hint: Names commonly chosen instead of 'master' are 'main', 'trunk' and 2021-05-17T21:32:41.6617689Z hint: 'development'. The just-created branch can be renamed via this command: 2021-05-17T21:32:41.6618364Z hint: 2021-05-17T21:32:41.6618931Z hint: git branch -m 2021-05-17T21:32:41.6624969Z Initialized empty Git repository in /home/runner/work/pbj/pbj/.git/ 2021-05-17T21:32:41.6637340Z [command]/usr/bin/git remote add origin https://github.com/neuroconductor/pbj 2021-05-17T21:32:41.6686199Z ##[endgroup] 2021-05-17T21:32:41.6687430Z ##[group]Disabling automatic garbage collection 2021-05-17T21:32:41.6691487Z [command]/usr/bin/git config --local gc.auto 0 2021-05-17T21:32:41.6730428Z ##[endgroup] 2021-05-17T21:32:41.6737514Z ##[group]Setting up auth 2021-05-17T21:32:41.6747248Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T21:32:41.6789394Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T21:32:41.7247408Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T21:32:41.7328306Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T21:32:41.7595435Z [command]/usr/bin/git config --local http.https://github.com/.extraheader AUTHORIZATION: basic *** 2021-05-17T21:32:41.7657984Z ##[endgroup] 2021-05-17T21:32:41.7659045Z ##[group]Fetching the repository 2021-05-17T21:32:41.7670102Z [command]/usr/bin/git -c protocol.version=2 fetch --no-tags --prune --progress --no-recurse-submodules --depth=1 origin +9a14729b22cd3c1a62a51f0955d2872a0211a079:refs/tags/0.1.6.s 2021-05-17T21:32:42.1202946Z remote: Enumerating objects: 74, done. 2021-05-17T21:32:42.1207825Z remote: Counting objects: 1% (1/74) 2021-05-17T21:32:42.1208733Z remote: Counting objects: 2% (2/74) 2021-05-17T21:32:42.1209509Z remote: Counting objects: 4% (3/74) 2021-05-17T21:32:42.1210273Z remote: Counting objects: 5% (4/74) 2021-05-17T21:32:42.1211021Z remote: Counting objects: 6% (5/74) 2021-05-17T21:32:42.1211949Z remote: Counting objects: 8% (6/74) 2021-05-17T21:32:42.1212703Z remote: Counting objects: 9% (7/74) 2021-05-17T21:32:42.1213398Z remote: Counting objects: 10% (8/74) 2021-05-17T21:32:42.1214102Z remote: Counting objects: 12% (9/74) 2021-05-17T21:32:42.1214811Z remote: Counting objects: 13% (10/74) 2021-05-17T21:32:42.1215675Z remote: Counting objects: 14% (11/74) 2021-05-17T21:32:42.1216331Z remote: Counting objects: 16% (12/74) 2021-05-17T21:32:42.1217000Z remote: Counting objects: 17% (13/74) 2021-05-17T21:32:42.1217644Z remote: Counting objects: 18% (14/74) 2021-05-17T21:32:42.1218279Z remote: Counting objects: 20% (15/74) 2021-05-17T21:32:42.1218910Z remote: Counting objects: 21% (16/74) 2021-05-17T21:32:42.1219557Z remote: Counting objects: 22% (17/74) 2021-05-17T21:32:42.1220163Z remote: Counting objects: 24% (18/74) 2021-05-17T21:32:42.1220782Z remote: Counting objects: 25% (19/74) 2021-05-17T21:32:42.1221386Z remote: Counting objects: 27% (20/74) 2021-05-17T21:32:42.1222009Z remote: Counting objects: 28% (21/74) 2021-05-17T21:32:42.1222939Z remote: Counting objects: 29% (22/74) 2021-05-17T21:32:42.1223604Z remote: Counting objects: 31% (23/74) 2021-05-17T21:32:42.1224235Z remote: Counting objects: 32% (24/74) 2021-05-17T21:32:42.1224824Z remote: Counting objects: 33% (25/74) 2021-05-17T21:32:42.1225397Z remote: Counting objects: 35% (26/74) 2021-05-17T21:32:42.1225997Z remote: Counting objects: 36% (27/74) 2021-05-17T21:32:42.1226893Z remote: Counting objects: 37% (28/74) 2021-05-17T21:32:42.1227452Z remote: Counting objects: 39% (29/74) 2021-05-17T21:32:42.1230161Z remote: Counting objects: 40% (30/74) 2021-05-17T21:32:42.1230716Z remote: Counting objects: 41% (31/74) 2021-05-17T21:32:42.1262021Z remote: Counting objects: 43% (32/74) 2021-05-17T21:32:42.1263320Z remote: Counting objects: 44% (33/74) 2021-05-17T21:32:42.1264242Z remote: Counting objects: 45% (34/74) 2021-05-17T21:32:42.1264939Z remote: Counting objects: 47% (35/74) 2021-05-17T21:32:42.1265605Z remote: Counting objects: 48% (36/74) 2021-05-17T21:32:42.1266304Z remote: Counting objects: 50% (37/74) 2021-05-17T21:32:42.1266988Z remote: Counting objects: 51% (38/74) 2021-05-17T21:32:42.1267813Z remote: Counting objects: 52% (39/74) 2021-05-17T21:32:42.1268667Z remote: Counting objects: 54% (40/74) 2021-05-17T21:32:42.1269595Z remote: Counting objects: 55% (41/74) 2021-05-17T21:32:42.1270308Z remote: Counting objects: 56% (42/74) 2021-05-17T21:32:42.1271172Z remote: Counting objects: 58% (43/74) 2021-05-17T21:32:42.1272174Z remote: Counting objects: 59% (44/74) 2021-05-17T21:32:42.1272864Z remote: Counting objects: 60% (45/74) 2021-05-17T21:32:42.1273541Z remote: Counting objects: 62% (46/74) 2021-05-17T21:32:42.1274219Z remote: Counting objects: 63% (47/74) 2021-05-17T21:32:42.1274902Z remote: Counting objects: 64% (48/74) 2021-05-17T21:32:42.1275718Z remote: Counting objects: 66% (49/74) 2021-05-17T21:32:42.1276379Z remote: Counting objects: 67% (50/74) 2021-05-17T21:32:42.1277031Z remote: Counting objects: 68% (51/74) 2021-05-17T21:32:42.1277679Z remote: Counting objects: 70% (52/74) 2021-05-17T21:32:42.1278337Z remote: Counting objects: 71% (53/74) 2021-05-17T21:32:42.1278987Z remote: Counting objects: 72% (54/74) 2021-05-17T21:32:42.1280117Z remote: Counting objects: 74% (55/74) 2021-05-17T21:32:42.1280818Z remote: Counting objects: 75% (56/74) 2021-05-17T21:32:42.1281439Z remote: Counting objects: 77% (57/74) 2021-05-17T21:32:42.1282236Z remote: Counting objects: 78% (58/74) 2021-05-17T21:32:42.1283418Z remote: Counting objects: 79% (59/74) 2021-05-17T21:32:42.1284455Z remote: Counting objects: 81% (60/74) 2021-05-17T21:32:42.1285133Z remote: Counting objects: 82% (61/74) 2021-05-17T21:32:42.1285821Z remote: Counting objects: 83% (62/74) 2021-05-17T21:32:42.1286492Z remote: Counting objects: 85% (63/74) 2021-05-17T21:32:42.1287162Z remote: Counting objects: 86% (64/74) 2021-05-17T21:32:42.1296218Z remote: Counting objects: 87% (65/74) 2021-05-17T21:32:42.1296970Z remote: Counting objects: 89% (66/74) 2021-05-17T21:32:42.1297537Z remote: Counting objects: 90% (67/74) 2021-05-17T21:32:42.1298087Z remote: Counting objects: 91% (68/74) 2021-05-17T21:32:42.1299011Z remote: Counting objects: 93% (69/74) 2021-05-17T21:32:42.1300317Z remote: Counting objects: 94% (70/74) 2021-05-17T21:32:42.1301409Z remote: Counting objects: 95% (71/74) 2021-05-17T21:32:42.1302014Z remote: Counting objects: 97% (72/74) 2021-05-17T21:32:42.1302755Z remote: Counting objects: 98% (73/74) 2021-05-17T21:32:42.1303302Z remote: Counting objects: 100% (74/74) 2021-05-17T21:32:42.1303891Z remote: Counting objects: 100% (74/74), done. 2021-05-17T21:32:42.1304497Z remote: Compressing objects: 1% (1/72) 2021-05-17T21:32:42.1305115Z remote: Compressing objects: 2% (2/72) 2021-05-17T21:32:42.1306310Z remote: Compressing objects: 4% (3/72) 2021-05-17T21:32:42.1306917Z remote: Compressing objects: 5% (4/72) 2021-05-17T21:32:42.1307538Z remote: Compressing objects: 6% (5/72) 2021-05-17T21:32:42.1308132Z remote: Compressing objects: 8% (6/72) 2021-05-17T21:32:42.1309024Z remote: Compressing objects: 9% (7/72) 2021-05-17T21:32:42.1309642Z remote: Compressing objects: 11% (8/72) 2021-05-17T21:32:42.1310237Z remote: Compressing objects: 12% (9/72) 2021-05-17T21:32:42.1310850Z remote: Compressing objects: 13% (10/72) 2021-05-17T21:32:42.1311470Z remote: Compressing objects: 15% (11/72) 2021-05-17T21:32:42.1312070Z remote: Compressing objects: 16% (12/72) 2021-05-17T21:32:42.1312982Z remote: Compressing objects: 18% (13/72) 2021-05-17T21:32:42.1313585Z remote: Compressing objects: 19% (14/72) 2021-05-17T21:32:42.1314200Z remote: Compressing objects: 20% (15/72) 2021-05-17T21:32:42.1314814Z remote: Compressing objects: 22% (16/72) 2021-05-17T21:32:42.1315403Z remote: Compressing objects: 23% (17/72) 2021-05-17T21:32:42.1316066Z remote: Compressing objects: 25% (18/72) 2021-05-17T21:32:42.1316815Z remote: Compressing objects: 26% (19/72) 2021-05-17T21:32:42.1317426Z remote: Compressing objects: 27% (20/72) 2021-05-17T21:32:42.1318013Z remote: Compressing objects: 29% (21/72) 2021-05-17T21:32:42.1318765Z remote: Compressing objects: 30% (22/72) 2021-05-17T21:32:42.1319372Z remote: Compressing objects: 31% (23/72) 2021-05-17T21:32:42.1320126Z remote: Compressing objects: 33% (24/72) 2021-05-17T21:32:42.1320692Z remote: Compressing objects: 34% (25/72) 2021-05-17T21:32:42.1321282Z remote: Compressing objects: 36% (26/72) 2021-05-17T21:32:42.1321894Z remote: Compressing objects: 37% (27/72) 2021-05-17T21:32:42.1322485Z remote: Compressing objects: 38% (28/72) 2021-05-17T21:32:42.1323469Z remote: Compressing objects: 40% (29/72) 2021-05-17T21:32:42.1324039Z remote: Compressing objects: 41% (30/72) 2021-05-17T21:32:42.1324624Z remote: Compressing objects: 43% (31/72) 2021-05-17T21:32:42.1325208Z remote: Compressing objects: 44% (32/72) 2021-05-17T21:32:42.1325882Z remote: Compressing objects: 45% (33/72) 2021-05-17T21:32:42.1326684Z remote: Compressing objects: 47% (34/72) 2021-05-17T21:32:42.1327427Z remote: Compressing objects: 48% (35/72) 2021-05-17T21:32:42.1328210Z remote: Compressing objects: 50% (36/72) 2021-05-17T21:32:42.1328818Z remote: Compressing objects: 51% (37/72) 2021-05-17T21:32:42.1329409Z remote: Compressing objects: 52% (38/72) 2021-05-17T21:32:42.1330018Z remote: Compressing objects: 54% (39/72) 2021-05-17T21:32:42.1330609Z remote: Compressing objects: 55% (40/72) 2021-05-17T21:32:42.1331222Z remote: Compressing objects: 56% (41/72) 2021-05-17T21:32:42.1331999Z remote: Compressing objects: 58% (42/72) 2021-05-17T21:32:42.1332573Z remote: Compressing objects: 59% (43/72) 2021-05-17T21:32:42.1333306Z remote: Compressing objects: 61% (44/72) 2021-05-17T21:32:42.1333878Z remote: Compressing objects: 62% (45/72) 2021-05-17T21:32:42.1334442Z remote: Compressing objects: 63% (46/72) 2021-05-17T21:32:42.1335007Z remote: Compressing objects: 65% (47/72) 2021-05-17T21:32:42.1335558Z remote: Compressing objects: 66% (48/72) 2021-05-17T21:32:42.1336300Z remote: Compressing objects: 68% (49/72) 2021-05-17T21:32:42.1337027Z remote: Compressing objects: 69% (50/72) 2021-05-17T21:32:42.1337577Z remote: Compressing objects: 70% (51/72) 2021-05-17T21:32:42.1338509Z remote: Compressing objects: 72% (52/72) 2021-05-17T21:32:42.1339156Z remote: Compressing objects: 73% (53/72) 2021-05-17T21:32:42.1339763Z remote: Compressing objects: 75% (54/72) 2021-05-17T21:32:42.1340372Z remote: Compressing objects: 76% (55/72) 2021-05-17T21:32:42.1340963Z remote: Compressing objects: 77% (56/72) 2021-05-17T21:32:42.1341566Z remote: Compressing objects: 79% (57/72) 2021-05-17T21:32:42.1343289Z remote: Compressing objects: 80% (58/72) 2021-05-17T21:32:42.1344187Z remote: Compressing objects: 81% (59/72) 2021-05-17T21:32:42.1345032Z remote: Compressing objects: 83% (60/72) 2021-05-17T21:32:42.1346606Z remote: Compressing objects: 84% (61/72) 2021-05-17T21:32:42.1347199Z remote: Compressing objects: 86% (62/72) 2021-05-17T21:32:42.1347816Z remote: Compressing objects: 87% (63/72) 2021-05-17T21:32:42.1348690Z remote: Compressing objects: 88% (64/72) 2021-05-17T21:32:42.1349295Z remote: Compressing objects: 90% (65/72) 2021-05-17T21:32:42.1350041Z remote: Compressing objects: 91% (66/72) 2021-05-17T21:32:42.1350615Z remote: Compressing objects: 93% (67/72) 2021-05-17T21:32:42.1351354Z remote: Compressing objects: 94% (68/72) 2021-05-17T21:32:42.1351905Z remote: Compressing objects: 95% (69/72) 2021-05-17T21:32:42.1352470Z remote: Compressing objects: 97% (70/72) 2021-05-17T21:32:42.1353220Z remote: Compressing objects: 98% (71/72) 2021-05-17T21:32:42.1353842Z remote: Compressing objects: 100% (72/72) 2021-05-17T21:32:42.1354458Z remote: Compressing objects: 100% (72/72), done. 2021-05-17T21:32:42.4009133Z remote: Total 74 (delta 4), reused 36 (delta 1), pack-reused 0 2021-05-17T21:32:42.5978063Z From https://github.com/neuroconductor/pbj 2021-05-17T21:32:42.5980460Z * [new ref] 9a14729b22cd3c1a62a51f0955d2872a0211a079 -> 0.1.6.s 2021-05-17T21:32:42.6010307Z ##[endgroup] 2021-05-17T21:32:42.6011187Z ##[group]Determining the checkout info 2021-05-17T21:32:42.6012390Z ##[endgroup] 2021-05-17T21:32:42.6013036Z ##[group]Checking out the ref 2021-05-17T21:32:42.6018459Z [command]/usr/bin/git checkout --progress --force refs/tags/0.1.6.s 2021-05-17T21:32:42.6462757Z Note: switching to 'refs/tags/0.1.6.s'. 2021-05-17T21:32:42.6463804Z 2021-05-17T21:32:42.6465054Z You are in 'detached HEAD' state. You can look around, make experimental 2021-05-17T21:32:42.6466246Z changes and commit them, and you can discard any commits you make in this 2021-05-17T21:32:42.6467216Z state without impacting any branches by switching back to a branch. 2021-05-17T21:32:42.6467790Z 2021-05-17T21:32:42.6468448Z If you want to create a new branch to retain commits you create, you may 2021-05-17T21:32:42.6469543Z do so (now or later) by using -c with the switch command. Example: 2021-05-17T21:32:42.6486176Z 2021-05-17T21:32:42.6487422Z git switch -c 2021-05-17T21:32:42.6487966Z 2021-05-17T21:32:42.6488527Z Or undo this operation with: 2021-05-17T21:32:42.6488979Z 2021-05-17T21:32:42.6489629Z git switch - 2021-05-17T21:32:42.6490049Z 2021-05-17T21:32:42.6490814Z Turn off this advice by setting config variable advice.detachedHead to false 2021-05-17T21:32:42.6491495Z 2021-05-17T21:32:42.6492612Z HEAD is now at 9a14729 Version id 120 stable 2021-05-17T21:32:42.6493646Z ##[endgroup] 2021-05-17T21:32:42.6537534Z [command]/usr/bin/git log -1 --format='%H' 2021-05-17T21:32:42.6567412Z '9a14729b22cd3c1a62a51f0955d2872a0211a079' 2021-05-17T21:32:42.6753748Z ##[group]Run r-lib/actions/setup-r@master 2021-05-17T21:32:42.6754973Z with: 2021-05-17T21:32:42.6755411Z r-version: devel 2021-05-17T21:32:42.6755825Z Ncpus: 1 2021-05-17T21:32:42.6756274Z crayon.enabled: NULL 2021-05-17T21:32:42.6756835Z remove-openmp-macos: true 2021-05-17T21:32:42.6757439Z http-user-agent: default 2021-05-17T21:32:42.6757931Z install-r: true 2021-05-17T21:32:42.6758547Z windows-path-include-mingw: true 2021-05-17T21:32:42.6759127Z env: 2021-05-17T21:32:42.6759584Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:32:42.6760091Z TIC_DEPLOY_KEY: 2021-05-17T21:32:42.6761551Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:32:42.6763260Z GITHUB_PAT: *** 2021-05-17T21:32:42.6764036Z COVERALLS_TOKEN: *** 2021-05-17T21:32:42.6764485Z continue-on-error: true 2021-05-17T21:32:42.6764933Z VDIFFR_RUN_TESTS: 2021-05-17T21:32:42.6765306Z ##[endgroup] 2021-05-17T21:32:43.6236982Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive add-apt-repository -y ppa:cran/travis 2021-05-17T21:32:46.0944232Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T21:32:46.0947087Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease [114 kB] 2021-05-17T21:32:46.0949312Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease [101 kB] 2021-05-17T21:32:46.1236977Z Hit:4 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T21:32:46.1924956Z Get:5 http://security.ubuntu.com/ubuntu focal-security InRelease [109 kB] 2021-05-17T21:32:46.3099579Z Get:6 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease [10.5 kB] 2021-05-17T21:32:46.3296241Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T21:32:46.3361927Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 Packages [983 kB] 2021-05-17T21:32:46.3628455Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main Translation-en [223 kB] 2021-05-17T21:32:46.3667185Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 c-n-f Metadata [13.3 kB] 2021-05-17T21:32:46.3669171Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted amd64 Packages [226 kB] 2021-05-17T21:32:46.3689366Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/restricted Translation-en [33.3 kB] 2021-05-17T21:32:46.3698339Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 Packages [775 kB] 2021-05-17T21:32:46.3817026Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe Translation-en [167 kB] 2021-05-17T21:32:46.3855635Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 c-n-f Metadata [17.5 kB] 2021-05-17T21:32:46.6043065Z Get:16 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease [18.0 kB] 2021-05-17T21:32:46.8297441Z Get:17 https://packages.microsoft.com/ubuntu/20.04/prod focal/main amd64 Packages [73.2 kB] 2021-05-17T21:32:47.0136788Z Get:18 http://security.ubuntu.com/ubuntu focal-security/main amd64 Packages [656 kB] 2021-05-17T21:32:47.0276523Z Hit:19 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T21:32:47.2967606Z Get:20 http://security.ubuntu.com/ubuntu focal-security/main Translation-en [132 kB] 2021-05-17T21:32:47.3049271Z Get:21 http://security.ubuntu.com/ubuntu focal-security/main amd64 c-n-f Metadata [7508 B] 2021-05-17T21:32:47.3064391Z Get:22 http://security.ubuntu.com/ubuntu focal-security/restricted amd64 Packages [203 kB] 2021-05-17T21:32:47.3203454Z Get:23 http://security.ubuntu.com/ubuntu focal-security/restricted Translation-en [29.7 kB] 2021-05-17T21:32:47.3254538Z Get:24 http://security.ubuntu.com/ubuntu focal-security/universe amd64 Packages [566 kB] 2021-05-17T21:32:47.3806934Z Get:25 http://security.ubuntu.com/ubuntu focal-security/universe Translation-en [85.2 kB] 2021-05-17T21:32:47.3864297Z Get:26 http://security.ubuntu.com/ubuntu focal-security/universe amd64 c-n-f Metadata [11.1 kB] 2021-05-17T21:32:54.5970196Z Fetched 4554 kB in 2s (3005 kB/s) 2021-05-17T21:32:55.4606128Z Reading package lists... 2021-05-17T21:32:55.4909403Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get update -y -qq 2021-05-17T21:32:57.5915097Z [command]/usr/bin/sudo DEBIAN_FRONTEND=noninteractive apt-get install -y gdebi-core qpdf devscripts 2021-05-17T21:32:57.6640256Z Reading package lists... 2021-05-17T21:32:58.4700562Z Building dependency tree... 2021-05-17T21:32:58.4703865Z Reading state information... 2021-05-17T21:32:58.4704808Z The following additional packages will be installed: 2021-05-17T21:32:58.4706940Z dctrl-tools diffstat dput gettext intltool-debian libapt-pkg-perl 2021-05-17T21:32:58.4708917Z libarchive-zip-perl libarray-intspan-perl libasync-mergepoint-perl 2021-05-17T21:32:58.4731786Z libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl 2021-05-17T21:32:58.4734099Z libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl 2021-05-17T21:32:58.4737123Z libcommon-sense-perl libconst-fast-perl libcontextual-return-perl 2021-05-17T21:32:58.4739215Z libcpanel-json-xs-perl libcroco3 libdata-optlist-perl 2021-05-17T21:32:58.4741191Z libdevel-callchecker-perl libdevel-size-perl libdigest-bubblebabble-perl 2021-05-17T21:32:58.4743232Z libdigest-hmac-perl libdistro-info-perl libdynaloader-functions-perl 2021-05-17T21:32:58.4961723Z libemail-valid-perl libexporter-tiny-perl libfile-chdir-perl 2021-05-17T21:32:58.4963112Z libfile-find-rule-perl libfile-homedir-perl libfile-which-perl 2021-05-17T21:32:58.4964415Z libfont-ttf-perl libfuture-perl libgetopt-long-descriptive-perl 2021-05-17T21:32:58.4965742Z libgit-wrapper-perl libgitlab-api-v4-perl libhash-fieldhash-perl 2021-05-17T21:32:58.4967160Z libhttp-tiny-multipart-perl libimport-into-perl libio-async-loop-epoll-perl 2021-05-17T21:32:58.4968963Z libio-async-perl libio-prompter-perl libio-pty-perl libio-string-perl 2021-05-17T21:32:58.4970286Z libipc-run-perl libjson-maybexs-perl libjson-perl libjson-xs-perl 2021-05-17T21:32:58.4971728Z liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl 2021-05-17T21:32:58.4972957Z liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T21:32:58.4974506Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T21:32:58.4975995Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T21:32:58.4977285Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T21:32:58.4978435Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T21:32:58.4979802Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T21:32:58.4981191Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T21:32:58.4982991Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T21:32:58.4984424Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T21:32:58.4985758Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T21:32:58.4987144Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T21:32:58.4988538Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T21:32:58.4989937Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T21:32:58.4991369Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T21:32:58.4992757Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T21:32:58.4994241Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T21:32:58.4995946Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T21:32:58.4997364Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T21:32:58.4998873Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T21:32:58.5000551Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T21:32:58.5001934Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T21:32:58.5002975Z python3-magic python3-unidiff python3-xdg t1utils wdiff 2021-05-17T21:32:58.5003615Z Suggested packages: 2021-05-17T21:32:58.5004480Z debtags adequate autopkgtest bls-standalone bsd-mailx | mailx 2021-05-17T21:32:58.5005615Z check-all-the-things cvs-buildpackage debhelper devscripts-el diffoscope 2021-05-17T21:32:58.5007149Z disorderfs dose-extra duck faketime gnuplot how-can-i-help libdbd-pg-perl 2021-05-17T21:32:58.5008372Z libnet-smtps-perl libterm-size-perl libyaml-syck-perl mozilla-devscripts 2021-05-17T21:32:58.5009590Z mutt piuparts quilt ratt reprotest svn-buildpackage w3m debian-keyring 2021-05-17T21:32:58.5010857Z equivs libsoap-lite-perl python3-paramiko mini-dinstall gettext-doc 2021-05-17T21:32:58.5011957Z autopoint libasprintf-dev libgettextpo-dev libossp-uuid-perl 2021-05-17T21:32:58.5013404Z libscalar-number-perl libbareword-filehandles-perl libindirect-perl 2021-05-17T21:32:58.5015082Z libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl 2021-05-17T21:32:58.5016384Z binutils-multiarch libtext-template-perl wdiff-doc 2021-05-17T21:32:58.5083240Z The following NEW packages will be installed: 2021-05-17T21:32:58.5084618Z dctrl-tools devscripts diffstat dput gdebi-core gettext intltool-debian 2021-05-17T21:32:58.5085762Z libapt-pkg-perl libarchive-zip-perl libarray-intspan-perl 2021-05-17T21:32:58.5088554Z libasync-mergepoint-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl 2021-05-17T21:32:58.5091582Z libcapture-tiny-perl libclass-method-modifiers-perl libclass-xsaccessor-perl 2021-05-17T21:32:58.5093652Z libclone-perl libcommon-sense-perl libconst-fast-perl 2021-05-17T21:32:58.5094907Z libcontextual-return-perl libcpanel-json-xs-perl libcroco3 2021-05-17T21:32:58.5096600Z libdata-optlist-perl libdevel-callchecker-perl libdevel-size-perl 2021-05-17T21:32:58.5098091Z libdigest-bubblebabble-perl libdigest-hmac-perl libdistro-info-perl 2021-05-17T21:32:58.5099603Z libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl 2021-05-17T21:32:58.5101164Z libfile-chdir-perl libfile-find-rule-perl libfile-homedir-perl 2021-05-17T21:32:58.5102538Z libfile-which-perl libfont-ttf-perl libfuture-perl 2021-05-17T21:32:58.5103912Z libgetopt-long-descriptive-perl libgit-wrapper-perl libgitlab-api-v4-perl 2021-05-17T21:32:58.5105457Z libhash-fieldhash-perl libhttp-tiny-multipart-perl libimport-into-perl 2021-05-17T21:32:58.5106870Z libio-async-loop-epoll-perl libio-async-perl libio-prompter-perl 2021-05-17T21:32:58.5108183Z libio-pty-perl libio-string-perl libipc-run-perl libjson-maybexs-perl 2021-05-17T21:32:58.5109481Z libjson-perl libjson-xs-perl liblinux-epoll-perl liblist-compare-perl 2021-05-17T21:32:58.5110863Z liblist-moreutils-perl liblist-someutils-perl liblist-someutils-xs-perl 2021-05-17T21:32:58.5112453Z liblog-any-adapter-screen-perl liblog-any-perl libmodule-implementation-perl 2021-05-17T21:32:58.5114450Z libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmoox-struct-perl 2021-05-17T21:32:58.5115875Z libnamespace-clean-perl libnet-dns-perl libnet-dns-sec-perl 2021-05-17T21:32:58.5117161Z libnet-domain-tld-perl libnet-ip-perl libnet-libidn-perl 2021-05-17T21:32:58.5118754Z libnumber-compare-perl libnumber-range-perl libobject-id-perl 2021-05-17T21:32:58.5120134Z libpackage-stash-perl libpackage-stash-xs-perl libparams-classify-perl 2021-05-17T21:32:58.5121616Z libparams-util-perl libparams-validate-perl libpath-iterator-rule-perl 2021-05-17T21:32:58.5122989Z libpath-tiny-perl libperl4-corelibs-perl libperlio-gzip-perl 2021-05-17T21:32:58.5124289Z libpod-constants-perl libqpdf26 libre-engine-re2-perl libreadonly-perl 2021-05-17T21:32:58.5125690Z libref-util-perl libref-util-xs-perl libregexp-pattern-license-perl 2021-05-17T21:32:58.5127060Z libregexp-pattern-perl librole-tiny-perl libsereal-decoder-perl 2021-05-17T21:32:58.5128657Z libsereal-encoder-perl libsereal-perl libsort-key-perl libsort-versions-perl 2021-05-17T21:32:58.5130171Z libstrictures-perl libstring-copyright-perl libstring-escape-perl 2021-05-17T21:32:58.5131550Z libstring-shellquote-perl libstruct-dumb-perl libsub-exporter-perl 2021-05-17T21:32:58.5133040Z libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl 2021-05-17T21:32:58.5134542Z libsub-name-perl libsub-quote-perl libterm-readkey-perl libtest-fatal-perl 2021-05-17T21:32:58.5135901Z libtest-refcount-perl libtext-glob-perl libtext-levenshtein-perl 2021-05-17T21:32:58.5137233Z libtype-tiny-perl libtype-tiny-xs-perl libtypes-serialiser-perl 2021-05-17T21:32:58.5138601Z libunicode-utf8-perl libvariable-magic-perl libwant-perl libxml-writer-perl 2021-05-17T21:32:58.5140850Z libyaml-libyaml-perl licensecheck lintian patchutils python3-gpg 2021-05-17T21:32:58.5142024Z python3-magic python3-unidiff python3-xdg qpdf t1utils wdiff 2021-05-17T21:32:58.5331995Z 0 upgraded, 130 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:32:58.5333263Z Need to get 8648 kB of archives. 2021-05-17T21:32:58.5334005Z After this operation, 32.3 MB of additional disk space will be used. 2021-05-17T21:32:58.5335729Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dctrl-tools amd64 2.24-3 [61.5 kB] 2021-05-17T21:32:58.5362502Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-which-perl all 1.23-1 [13.8 kB] 2021-05-17T21:32:58.5369865Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-homedir-perl all 1.004-1 [37.3 kB] 2021-05-17T21:32:58.5378880Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-pty-perl amd64 1:1.12-1 [32.4 kB] 2021-05-17T21:32:58.5388690Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libipc-run-perl all 20180523.0-2 [89.7 kB] 2021-05-17T21:32:58.5409733Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-method-modifiers-perl all 2.13-1 [16.2 kB] 2021-05-17T21:32:58.5416663Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-op-check-perl amd64 0.22-1build2 [10.2 kB] 2021-05-17T21:32:58.5424791Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdynaloader-functions-perl all 0.003-1 [11.9 kB] 2021-05-17T21:32:58.5431686Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-callchecker-perl amd64 0.008-1ubuntu1 [14.5 kB] 2021-05-17T21:32:58.5438557Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-classify-perl amd64 0.015-1build2 [21.1 kB] 2021-05-17T21:32:58.5444519Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-runtime-perl all 0.016-1 [16.2 kB] 2021-05-17T21:32:58.5451948Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimport-into-perl all 1.002005-1 [11.0 kB] 2021-05-17T21:32:58.5453700Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librole-tiny-perl all 2.001004-1 [16.5 kB] 2021-05-17T21:32:58.5467315Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstrictures-perl all 2.000006-1 [16.3 kB] 2021-05-17T21:32:58.5473626Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-quote-perl all 2.006006-1 [19.5 kB] 2021-05-17T21:32:58.5480621Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoo-perl all 2.003006-1 [46.3 kB] 2021-05-17T21:32:58.5488275Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 patchutils amd64 0.3.4-2 [71.1 kB] 2021-05-17T21:32:58.5500482Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 wdiff amd64 1.2.2-2build1 [29.8 kB] 2021-05-17T21:32:58.5506684Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 devscripts amd64 2.20.2ubuntu2 [940 kB] 2021-05-17T21:32:58.5636180Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 diffstat amd64 1.63-1 [27.2 kB] 2021-05-17T21:32:58.5658934Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-gpg amd64 1.13.1-7ubuntu2 [165 kB] 2021-05-17T21:32:58.5667815Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 dput all 1.0.3ubuntu1 [42.3 kB] 2021-05-17T21:32:58.5679379Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdebi-core all 0.9.5.7+nmu3 [116 kB] 2021-05-17T21:32:58.5699165Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcroco3 amd64 0.6.13-1 [82.5 kB] 2021-05-17T21:32:58.5712250Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gettext amd64 0.19.8.1-10build1 [895 kB] 2021-05-17T21:32:58.5855293Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 intltool-debian all 0.35.0+20060710.5 [24.9 kB] 2021-05-17T21:32:58.5857540Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libapt-pkg-perl amd64 0.1.36build3 [68.5 kB] 2021-05-17T21:32:58.5866384Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-zip-perl all 1.67-2 [90.5 kB] 2021-05-17T21:32:58.5880756Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarray-intspan-perl all 2.003-1 [23.3 kB] 2021-05-17T21:32:58.5888841Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasync-mergepoint-perl all 0.04-2 [10.2 kB] 2021-05-17T21:32:58.5903234Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmodule-implementation-perl all 0.09-1 [12.2 kB] 2021-05-17T21:32:58.5905560Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [6784 B] 2021-05-17T21:32:58.5907812Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvariable-magic-perl amd64 0.62-1build2 [34.4 kB] 2021-05-17T21:32:58.5923629Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libb-hooks-endofscope-perl all 0.24-1 [16.8 kB] 2021-05-17T21:32:58.5925959Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcapture-tiny-perl all 0.48-1 [20.4 kB] 2021-05-17T21:32:58.5927776Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclass-xsaccessor-perl amd64 1.19-3build3 [33.6 kB] 2021-05-17T21:32:58.5935090Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libclone-perl amd64 0.43-2 [11.0 kB] 2021-05-17T21:32:58.5940891Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcommon-sense-perl amd64 3.74-2build6 [20.1 kB] 2021-05-17T21:32:58.5943464Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-util-perl amd64 1.07-3build5 [19.7 kB] 2021-05-17T21:32:58.5952740Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-install-perl all 0.928-1 [10.5 kB] 2021-05-17T21:32:58.5961237Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdata-optlist-perl all 0.110-1 [9956 B] 2021-05-17T21:32:58.5962914Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-exporter-perl all 0.987-1 [44.9 kB] 2021-05-17T21:32:58.5971646Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libconst-fast-perl all 0.014-1 [7958 B] 2021-05-17T21:32:58.5980613Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwant-perl amd64 0.29-1build4 [24.2 kB] 2021-05-17T21:32:58.5986601Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcontextual-return-perl all 0.004014-2 [53.1 kB] 2021-05-17T21:32:58.5991573Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcpanel-json-xs-perl amd64 4.19-1build1 [109 kB] 2021-05-17T21:32:58.6016660Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-bubblebabble-perl all 0.02-2 [7908 B] 2021-05-17T21:32:58.6018490Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.3 kB] 2021-05-17T21:32:58.6020464Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdistro-info-perl all 0.23ubuntu1 [4668 B] 2021-05-17T21:32:58.6026461Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-ip-perl all 1.26-2 [27.4 kB] 2021-05-17T21:32:58.6051641Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-perl all 1.22-1 [336 kB] 2021-05-17T21:32:58.6082275Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-domain-tld-perl all 1.75-1 [29.1 kB] 2021-05-17T21:32:58.6088159Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libemail-valid-perl all 1.202-1 [16.3 kB] 2021-05-17T21:32:58.6095041Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libexporter-tiny-perl all 1.002001-1 [35.5 kB] 2021-05-17T21:32:58.6103456Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-chdir-perl all 0.1008-1 [11.7 kB] 2021-05-17T21:32:58.6113987Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-compare-perl all 0.03-1 [7318 B] 2021-05-17T21:32:58.6115649Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-glob-perl all 0.10-1 [7554 B] 2021-05-17T21:32:58.6127962Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfile-find-rule-perl all 0.34-1 [28.3 kB] 2021-05-17T21:32:58.6129670Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-string-perl all 1.08-3 [11.1 kB] 2021-05-17T21:32:58.6134092Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfont-ttf-perl all 1.06-1 [313 kB] 2021-05-17T21:32:58.6228400Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfuture-perl all 0.43-1 [77.8 kB] 2021-05-17T21:32:58.6239688Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libparams-validate-perl amd64 1.29-3 [52.7 kB] 2021-05-17T21:32:58.6248255Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgetopt-long-descriptive-perl all 0.104-1 [24.6 kB] 2021-05-17T21:32:58.6275368Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-versions-perl all 1.62-1 [9294 B] 2021-05-17T21:32:58.6283861Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgit-wrapper-perl all 0.048-1 [29.9 kB] 2021-05-17T21:32:58.6294660Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhttp-tiny-multipart-perl all 0.08-1 [8488 B] 2021-05-17T21:32:58.6296676Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-prompter-perl all 0.004015-1 [58.1 kB] 2021-05-17T21:32:58.6305049Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-perl all 4.02000-2 [80.9 kB] 2021-05-17T21:32:58.6318913Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-perl all 1.708-1 [67.8 kB] 2021-05-17T21:32:58.6331844Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblog-any-adapter-screen-perl all 0.140-1 [12.1 kB] 2021-05-17T21:32:58.6348632Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-perl all 0.38-1 [19.1 kB] 2021-05-17T21:32:58.6354869Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-identify-perl amd64 0.14-1build2 [10.7 kB] 2021-05-17T21:32:58.6357021Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsub-name-perl amd64 0.26-1 [11.5 kB] 2021-05-17T21:32:58.6368095Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnamespace-clean-perl all 0.27-1 [13.6 kB] 2021-05-17T21:32:58.6369749Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-tiny-perl all 0.108-1 [42.6 kB] 2021-05-17T21:32:58.6376662Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-perl all 1.008001-2 [304 kB] 2021-05-17T21:32:58.6399835Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgitlab-api-v4-perl all 0.25-1 [83.8 kB] 2021-05-17T21:32:58.6416476Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhash-fieldhash-perl amd64 0.15-1build2 [16.9 kB] 2021-05-17T21:32:58.6419126Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstruct-dumb-perl all 0.09-1 [10.5 kB] 2021-05-17T21:32:58.6428754Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-perl all 0.75-1 [254 kB] 2021-05-17T21:32:58.6447174Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblinux-epoll-perl amd64 0.017-1 [16.0 kB] 2021-05-17T21:32:58.6471650Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libio-async-loop-epoll-perl all 0.20-1 [10.4 kB] 2021-05-17T21:32:58.6489364Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtypes-serialiser-perl all 1.0-1 [12.1 kB] 2021-05-17T21:32:58.6494629Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-xs-perl amd64 4.020-1build1 [83.7 kB] 2021-05-17T21:32:58.6496282Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjson-maybexs-perl all 1.004000-1 [11.0 kB] 2021-05-17T21:32:58.6498123Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-compare-perl all 0.53-1 [65.6 kB] 2021-05-17T21:32:58.6500119Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-moreutils-perl amd64 0.416-1build5 [55.5 kB] 2021-05-17T21:32:58.6509038Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-perl all 0.58-1 [29.7 kB] 2021-05-17T21:32:58.6518133Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liblist-someutils-xs-perl amd64 0.58-2 [32.5 kB] 2021-05-17T21:32:58.6532318Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-aliases-perl all 0.001006-1 [7176 B] 2021-05-17T21:32:58.6534168Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libobject-id-perl all 0.1.2-2ubuntu1 [15.9 kB] 2021-05-17T21:32:58.6539195Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmoox-struct-perl all 0.017-1 [23.4 kB] 2021-05-17T21:32:58.6548990Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-dns-sec-perl amd64 1.15-1 [44.6 kB] 2021-05-17T21:32:58.6560533Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnet-libidn-perl amd64 0.12.ds-3build2 [17.3 kB] 2021-05-17T21:32:58.6568051Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnumber-range-perl all 0.12-1 [8556 B] 2021-05-17T21:32:58.6577491Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpackage-stash-xs-perl amd64 0.29-1build1 [18.4 kB] 2021-05-17T21:32:58.6588801Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpath-iterator-rule-perl all 1.014-1 [49.5 kB] 2021-05-17T21:32:58.6597846Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperl4-corelibs-perl all 0.004-2 [37.4 kB] 2021-05-17T21:32:58.6613998Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libperlio-gzip-perl amd64 0.19-1build5 [14.6 kB] 2021-05-17T21:32:58.6615892Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpod-constants-perl all 0.19-1 [16.0 kB] 2021-05-17T21:32:58.6625190Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqpdf26 amd64 9.1.1-1build1 [421 kB] 2021-05-17T21:32:58.6706183Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libre-engine-re2-perl amd64 0.13-5 [16.2 kB] 2021-05-17T21:32:58.6732825Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libreadonly-perl all 2.050-2 [19.9 kB] 2021-05-17T21:32:58.6742006Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-perl all 0.204-1 [15.0 kB] 2021-05-17T21:32:58.6750594Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libref-util-xs-perl amd64 0.117-1build2 [12.0 kB] 2021-05-17T21:32:58.6762538Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-license-perl all 3.2.0-1 [36.2 kB] 2021-05-17T21:32:58.6776990Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libregexp-pattern-perl all 0.2.12-1 [17.1 kB] 2021-05-17T21:32:58.6786258Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-decoder-perl amd64 4.011+ds-1build1 [102 kB] 2021-05-17T21:32:58.6813559Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-encoder-perl amd64 4.011+ds-1build1 [104 kB] 2021-05-17T21:32:58.6840741Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsereal-perl all 4.011-1 [8604 B] 2021-05-17T21:32:58.6847775Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsort-key-perl amd64 1.33-2build2 [35.4 kB] 2021-05-17T21:32:58.6857233Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-copyright-perl all 0.003006-1 [9608 B] 2021-05-17T21:32:58.6867408Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-escape-perl all 2010.002-2 [17.6 kB] 2021-05-17T21:32:58.6877468Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libstring-shellquote-perl all 1.04-1 [12.0 kB] 2021-05-17T21:32:58.6886414Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libterm-readkey-perl amd64 2.38-1build1 [24.6 kB] 2021-05-17T21:32:58.6894512Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-fatal-perl all 0.014-1 [11.1 kB] 2021-05-17T21:32:58.6900010Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtest-refcount-perl all 0.10-1 [11.4 kB] 2021-05-17T21:32:58.6908742Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtext-levenshtein-perl all 0.13-1 [9612 B] 2021-05-17T21:32:58.6916350Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtype-tiny-xs-perl amd64 0.016-1 [22.9 kB] 2021-05-17T21:32:58.6925080Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libunicode-utf8-perl amd64 0.62-1build1 [18.1 kB] 2021-05-17T21:32:58.6934269Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxml-writer-perl all 0.625-1 [24.9 kB] 2021-05-17T21:32:58.6941269Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libyaml-libyaml-perl amd64 0.81+repack-1 [28.5 kB] 2021-05-17T21:32:58.6947989Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 licensecheck all 3.0.45-1 [23.9 kB] 2021-05-17T21:32:58.6955855Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdevel-size-perl amd64 0.83-1build1 [20.0 kB] 2021-05-17T21:32:58.6962845Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 t1utils amd64 1.41-3 [56.1 kB] 2021-05-17T21:32:58.6998239Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 lintian all 2.62.0 [980 kB] 2021-05-17T21:32:58.7226008Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-unidiff all 0.5.5-2 [9180 B] 2021-05-17T21:32:58.7234284Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-xdg all 0.26-1ubuntu1 [36.1 kB] 2021-05-17T21:32:58.7252990Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qpdf amd64 9.1.1-1build1 [476 kB] 2021-05-17T21:32:58.7444640Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-magic all 2:0.4.15-3 [9376 B] 2021-05-17T21:32:59.5033390Z Fetched 8648 kB in 0s (37.8 MB/s) 2021-05-17T21:32:59.5405340Z Selecting previously unselected package dctrl-tools. 2021-05-17T21:32:59.5632018Z (Reading database ... 2021-05-17T21:32:59.5632961Z (Reading database ... 5% 2021-05-17T21:32:59.5633790Z (Reading database ... 10% 2021-05-17T21:32:59.5634255Z (Reading database ... 15% 2021-05-17T21:32:59.5634712Z (Reading database ... 20% 2021-05-17T21:32:59.5635139Z (Reading database ... 25% 2021-05-17T21:32:59.5635606Z (Reading database ... 30% 2021-05-17T21:32:59.5636183Z (Reading database ... 35% 2021-05-17T21:32:59.5636617Z (Reading database ... 40% 2021-05-17T21:32:59.5637034Z (Reading database ... 45% 2021-05-17T21:32:59.5637466Z (Reading database ... 50% 2021-05-17T21:32:59.5984973Z (Reading database ... 55% 2021-05-17T21:32:59.6536046Z (Reading database ... 60% 2021-05-17T21:32:59.7297745Z (Reading database ... 65% 2021-05-17T21:32:59.7803246Z (Reading database ... 70% 2021-05-17T21:32:59.8743473Z (Reading database ... 75% 2021-05-17T21:32:59.9780522Z (Reading database ... 80% 2021-05-17T21:33:00.0962440Z (Reading database ... 85% 2021-05-17T21:33:00.1762022Z (Reading database ... 90% 2021-05-17T21:33:00.2604348Z (Reading database ... 95% 2021-05-17T21:33:00.2604822Z (Reading database ... 100% 2021-05-17T21:33:00.2605452Z (Reading database ... 254809 files and directories currently installed.) 2021-05-17T21:33:00.2758678Z Preparing to unpack .../000-dctrl-tools_2.24-3_amd64.deb ... 2021-05-17T21:33:00.2938483Z Unpacking dctrl-tools (2.24-3) ... 2021-05-17T21:33:00.3304919Z Selecting previously unselected package libfile-which-perl. 2021-05-17T21:33:00.3537766Z Preparing to unpack .../001-libfile-which-perl_1.23-1_all.deb ... 2021-05-17T21:33:00.3554744Z Unpacking libfile-which-perl (1.23-1) ... 2021-05-17T21:33:00.3865401Z Selecting previously unselected package libfile-homedir-perl. 2021-05-17T21:33:00.4108172Z Preparing to unpack .../002-libfile-homedir-perl_1.004-1_all.deb 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previously unselected package libpackage-stash-perl. 2021-05-17T21:33:04.9450991Z Preparing to unpack .../070-libpackage-stash-perl_0.38-1_all.deb ... 2021-05-17T21:33:04.9463472Z Unpacking libpackage-stash-perl (0.38-1) ... 2021-05-17T21:33:04.9744172Z Selecting previously unselected package libsub-identify-perl. 2021-05-17T21:33:05.0028594Z Preparing to unpack .../071-libsub-identify-perl_0.14-1build2_amd64.deb ... 2021-05-17T21:33:05.0041837Z Unpacking libsub-identify-perl (0.14-1build2) ... 2021-05-17T21:33:05.0343922Z Selecting previously unselected package libsub-name-perl. 2021-05-17T21:33:05.0579844Z Preparing to unpack .../072-libsub-name-perl_0.26-1_amd64.deb ... 2021-05-17T21:33:05.0621151Z Unpacking libsub-name-perl (0.26-1) ... 2021-05-17T21:33:05.0984704Z Selecting previously unselected package libnamespace-clean-perl. 2021-05-17T21:33:05.1188619Z Preparing to unpack .../073-libnamespace-clean-perl_0.27-1_all.deb ... 2021-05-17T21:33:05.1205350Z Unpacking 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Done 2021-05-17T21:33:35.8278211Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/R /usr/local/bin/R 2021-05-17T21:33:35.8392446Z [command]/usr/bin/sudo ln -s /opt/R/devel/bin/Rscript /usr/local/bin/Rscript 2021-05-17T21:33:35.8648678Z ##[group]Run r-lib/actions/setup-tinytex@master 2021-05-17T21:33:35.8649149Z env: 2021-05-17T21:33:35.8649536Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:35.8649951Z TIC_DEPLOY_KEY: 2021-05-17T21:33:35.8650624Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:35.8652508Z GITHUB_PAT: *** 2021-05-17T21:33:35.8653435Z COVERALLS_TOKEN: *** 2021-05-17T21:33:35.8653858Z continue-on-error: true 2021-05-17T21:33:35.8654290Z VDIFFR_RUN_TESTS: 2021-05-17T21:33:35.8654727Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:33:35.8655113Z TZ: UTC 2021-05-17T21:33:35.8655466Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:33:35.8655823Z NOT_CRAN: true 2021-05-17T21:33:35.8656164Z ##[endgroup] 2021-05-17T21:33:35.9199276Z [command]sudo apt-get install -y texinfo 2021-05-17T21:33:36.0904507Z Reading package lists... 2021-05-17T21:33:36.2480244Z Building dependency tree... 2021-05-17T21:33:36.2512863Z Reading state information... 2021-05-17T21:33:36.4546668Z texinfo is already the newest version (6.7.0.dfsg.2-5). 2021-05-17T21:33:36.4548160Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:37.3202534Z [command]sh /home/runner/work/_temp/install-unx.sh 2021-05-17T21:33:37.3747863Z --2021-05-17 21:33:37-- https://yihui.org/tinytex/TinyTeX-1.tar.gz 2021-05-17T21:33:37.3902002Z Resolving yihui.org (yihui.org)... 76.223.126.88 2021-05-17T21:33:37.3947569Z Connecting to yihui.org (yihui.org)|76.223.126.88|:443... connected. 2021-05-17T21:33:37.4512837Z HTTP request sent, awaiting response... 301 Moved Permanently 2021-05-17T21:33:37.4515027Z Location: https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu [following] 2021-05-17T21:33:37.4517093Z --2021-05-17 21:33:37-- https://ci.appveyor.com/api/projects/yihui/tinytex/artifacts/TinyTeX-1.tar.gz?job=image%3A%20Ubuntu 2021-05-17T21:33:37.5860208Z Resolving ci.appveyor.com (ci.appveyor.com)... 138.91.141.243 2021-05-17T21:33:37.6085130Z Connecting to ci.appveyor.com (ci.appveyor.com)|138.91.141.243|:443... connected. 2021-05-17T21:33:37.9406477Z HTTP request sent, awaiting response... 302 Found 2021-05-17T21:33:37.9410934Z Location: https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=dYO5WkvBZT1iEUwrtrlj052TqmTIor3OBD9j73pF2ts%3D&st=2021-05-17T21%3A32%3A37Z&se=2021-05-17T21%3A38%3A37Z&sp=r [following] 2021-05-17T21:33:37.9982710Z --2021-05-17 21:33:37-- https://appveyorcidata.blob.core.windows.net/yihui-27038/tinytex/1-0-1550/guvetqs88lxl2mv0/TinyTeX-1.tar.gz?sv=2015-12-11&sr=c&sig=dYO5WkvBZT1iEUwrtrlj052TqmTIor3OBD9j73pF2ts%3D&st=2021-05-17T21%3A32%3A37Z&se=2021-05-17T21%3A38%3A37Z&sp=r 2021-05-17T21:33:37.9985712Z Resolving appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)... 52.239.228.196 2021-05-17T21:33:38.0209767Z Connecting to appveyorcidata.blob.core.windows.net (appveyorcidata.blob.core.windows.net)|52.239.228.196|:443... connected. 2021-05-17T21:33:38.1770384Z HTTP request sent, awaiting response... 200 OK 2021-05-17T21:33:38.1771812Z Length: 67306919 (64M) [application/octet-stream] 2021-05-17T21:33:38.1773664Z Saving to: ‘TinyTeX.tar.gz’ 2021-05-17T21:33:38.4141581Z 2021-05-17T21:33:39.1215796Z 0K ........ ........ ........ ........ 49% 35.6M 1s 2021-05-17T21:33:39.6496682Z 32768K ........ ........ ........ ........ 99% 58.3M 0s 2021-05-17T21:33:39.6497926Z 65536K 100% 7.83M=1.5s 2021-05-17T21:33:39.6498674Z 2021-05-17T21:33:39.6500194Z 2021-05-17 21:33:39 (43.6 MB/s) - ‘TinyTeX.tar.gz’ saved [67306919/67306919] 2021-05-17T21:33:39.6500746Z 2021-05-17T21:33:41.7899486Z tlmgr: setting option sys_bin to /home/runner/bin. 2021-05-17T21:33:41.7900404Z tlmgr: updating /home/runner/.TinyTeX/tlpkg/texlive.tlpdb 2021-05-17T21:33:42.1272409Z ##[group]Run tlmgr update --self 2021-05-17T21:33:42.1273039Z tlmgr update --self 2021-05-17T21:33:42.1273880Z tlmgr install filecontents upquote courier courier-scaled biber biblatex collection-luatex ae thumbpdf grfext 2021-05-17T21:33:42.1274712Z tlmgr update --all 2021-05-17T21:33:42.1326456Z shell: /usr/bin/bash -e {0} 2021-05-17T21:33:42.1326860Z env: 2021-05-17T21:33:42.1327297Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:42.1327745Z TIC_DEPLOY_KEY: 2021-05-17T21:33:42.1328567Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:42.1330705Z GITHUB_PAT: *** 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2021-05-17T21:33:55.3736293Z done running fmtutil-sys --byfmt optex --no-error-if-no-engine=luajithbtex,luajittex,mfluajit --status-file=/tmp/VP3iMBjZkf/JjZJBEqsAA. 2021-05-17T21:33:55.3738309Z OK: optex.fmt/luatex 2021-05-17T21:33:55.3739886Z tlmgr: package log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr.log 2021-05-17T21:33:55.3741633Z tlmgr: command log updated: /home/runner/.TinyTeX/texmf-var/web2c/tlmgr-commands.log 2021-05-17T21:33:56.9155840Z tlmgr: package repository https://ctan.math.illinois.edu/systems/texlive/tlnet (verified) 2021-05-17T21:33:56.9157961Z tlmgr: no updates available 2021-05-17T21:33:57.0184919Z ##[group]Run r-lib/actions/setup-pandoc@master 2021-05-17T21:33:57.0185408Z with: 2021-05-17T21:33:57.0185779Z pandoc-version: 2.7.3 2021-05-17T21:33:57.0186129Z env: 2021-05-17T21:33:57.0186531Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:33:57.0187128Z TIC_DEPLOY_KEY: 2021-05-17T21:33:57.0188011Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:33:57.0189666Z GITHUB_PAT: *** 2021-05-17T21:33:57.0190421Z COVERALLS_TOKEN: *** 2021-05-17T21:33:57.0191031Z continue-on-error: true 2021-05-17T21:33:57.0191677Z VDIFFR_RUN_TESTS: 2021-05-17T21:33:57.0192142Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:33:57.0192583Z TZ: UTC 2021-05-17T21:33:57.0192967Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:33:57.0193361Z NOT_CRAN: true 2021-05-17T21:33:57.0193731Z ##[endgroup] 2021-05-17T21:33:57.4405667Z [command]sudo apt-get install -y gdebi-core 2021-05-17T21:33:57.5104623Z Reading package lists... 2021-05-17T21:33:57.6825111Z Building dependency tree... 2021-05-17T21:33:57.6854291Z Reading state information... 2021-05-17T21:33:57.9215649Z gdebi-core is already the newest version (0.9.5.7+nmu3). 2021-05-17T21:33:57.9222873Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:33:57.9243582Z [command]sudo gdebi --non-interactive /home/runner/work/_temp/pandoc-2.7.3-1-amd64.deb 2021-05-17T21:33:58.0545800Z 2021-05-17T21:33:58.0707854Z Reading package lists... 0% 2021-05-17T21:33:58.0708753Z 2021-05-17T21:33:58.0753082Z Reading package lists... 100% 2021-05-17T21:33:58.0753810Z 2021-05-17T21:33:58.0754303Z 2021-05-17T21:33:58.0755018Z Reading package lists... Done 2021-05-17T21:33:58.0755576Z 2021-05-17T21:33:58.0756280Z Building dependency tree... 0% 2021-05-17T21:33:58.0756837Z 2021-05-17T21:33:58.1028429Z Building dependency tree... 0% 2021-05-17T21:33:58.1029283Z 2021-05-17T21:33:58.1030020Z Building dependency tree... 50% 2021-05-17T21:33:58.1030547Z 2021-05-17T21:33:58.2442131Z Building dependency tree... 50% 2021-05-17T21:33:58.2442581Z 2021-05-17T21:33:58.2443043Z Building dependency tree 2021-05-17T21:33:58.2443370Z 2021-05-17T21:33:58.2443996Z Reading state information... 0% 2021-05-17T21:33:58.2444466Z 2021-05-17T21:33:58.4183030Z Reading state information... 0% 2021-05-17T21:33:58.4183463Z 2021-05-17T21:33:58.4183705Z 2021-05-17T21:33:58.4184245Z Reading state information... 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2021-05-17T21:33:58.6274042Z 2021-05-17T21:33:58.6274614Z Reading state information... 87% 2021-05-17T21:33:58.6314721Z 2021-05-17T21:33:58.6315589Z Reading state information... 89% 2021-05-17T21:33:58.6356632Z 2021-05-17T21:33:58.6357375Z Reading state information... 91% 2021-05-17T21:33:58.6397166Z 2021-05-17T21:33:58.6397691Z Reading state information... 93% 2021-05-17T21:33:58.6438311Z 2021-05-17T21:33:58.6438792Z Reading state information... 95% 2021-05-17T21:33:58.6479110Z 2021-05-17T21:33:58.6479797Z Reading state information... 97% 2021-05-17T21:33:58.6522013Z 2021-05-17T21:33:58.6522564Z Reading state information... 99% 2021-05-17T21:33:58.9416564Z Selecting previously unselected package pandoc. 2021-05-17T21:33:59.0625041Z (Reading database ... 261973 files and directories currently installed.) 2021-05-17T21:33:59.0771564Z Preparing to unpack .../_temp/pandoc-2.7.3-1-amd64.deb ... 2021-05-17T21:33:59.0787769Z Unpacking pandoc (2.7.3-1) ... 2021-05-17T21:34:01.1401364Z Setting up pandoc (2.7.3-1) ... 2021-05-17T21:34:01.1450070Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:01.8956967Z 2021-05-17T21:34:01.8957942Z 2021-05-17T21:34:01.8958668Z Reading state information... Done 2021-05-17T21:34:01.9395732Z ##[group]Run git config user.name adigherman 2021-05-17T21:34:01.9396429Z git config user.name adigherman 2021-05-17T21:34:01.9396983Z git config user.email adig@jhu.edu 2021-05-17T21:34:01.9438168Z shell: /usr/bin/bash -e {0} 2021-05-17T21:34:01.9438538Z env: 2021-05-17T21:34:01.9439186Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:34:01.9439698Z TIC_DEPLOY_KEY: 2021-05-17T21:34:01.9440540Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:34:01.9442507Z GITHUB_PAT: *** 2021-05-17T21:34:01.9443348Z COVERALLS_TOKEN: *** 2021-05-17T21:34:01.9443793Z continue-on-error: true 2021-05-17T21:34:01.9444231Z VDIFFR_RUN_TESTS: 2021-05-17T21:34:01.9444665Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:34:01.9445080Z TZ: UTC 2021-05-17T21:34:01.9445626Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:34:01.9446198Z NOT_CRAN: true 2021-05-17T21:34:01.9446763Z ##[endgroup] 2021-05-17T21:34:01.9725458Z ##[group]Run adigherman/actions/install-sysdeps-linux@master 2021-05-17T21:34:01.9726073Z env: 2021-05-17T21:34:01.9726499Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:34:01.9726935Z TIC_DEPLOY_KEY: 2021-05-17T21:34:01.9727796Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:34:01.9729381Z GITHUB_PAT: *** 2021-05-17T21:34:01.9730102Z COVERALLS_TOKEN: *** 2021-05-17T21:34:01.9730539Z continue-on-error: true 2021-05-17T21:34:01.9730944Z VDIFFR_RUN_TESTS: 2021-05-17T21:34:01.9731376Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:34:01.9731756Z TZ: UTC 2021-05-17T21:34:01.9732102Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:34:01.9732472Z NOT_CRAN: true 2021-05-17T21:34:01.9732793Z ##[endgroup] 2021-05-17T21:34:02.1632523Z Reading package lists... 2021-05-17T21:34:02.3064254Z Building dependency tree... 2021-05-17T21:34:02.3082944Z Reading state information... 2021-05-17T21:34:02.4327506Z The following additional packages will be installed: 2021-05-17T21:34:02.4333745Z cmake-data libjsoncpp1 librhash0 2021-05-17T21:34:02.4340004Z Suggested packages: 2021-05-17T21:34:02.4340701Z cmake-doc ninja-build 2021-05-17T21:34:02.4788599Z The following NEW packages will be installed: 2021-05-17T21:34:02.4796246Z cmake cmake-data libjsoncpp1 librhash0 2021-05-17T21:34:02.4976938Z 0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:02.4978120Z Need to get 5470 kB of archives. 2021-05-17T21:34:02.4979148Z After this operation, 28.3 MB of additional disk space will be used. 2021-05-17T21:34:02.4980986Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake-data all 3.16.3-1ubuntu1 [1612 kB] 2021-05-17T21:34:02.5281363Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjsoncpp1 amd64 1.7.4-3.1ubuntu2 [75.6 kB] 2021-05-17T21:34:02.5300571Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 librhash0 amd64 1.3.9-1 [113 kB] 2021-05-17T21:34:02.5329885Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 cmake amd64 3.16.3-1ubuntu1 [3669 kB] 2021-05-17T21:34:03.0483031Z Fetched 5470 kB in 0s (49.5 MB/s) 2021-05-17T21:34:03.0928934Z Selecting previously unselected package cmake-data. 2021-05-17T21:34:03.1003852Z (Reading database ... 2021-05-17T21:34:03.1004784Z (Reading database ... 5% 2021-05-17T21:34:03.1005758Z (Reading database ... 10% 2021-05-17T21:34:03.1006719Z (Reading database ... 15% 2021-05-17T21:34:03.1007666Z (Reading database ... 20% 2021-05-17T21:34:03.1008457Z (Reading database ... 25% 2021-05-17T21:34:03.1009225Z (Reading database ... 30% 2021-05-17T21:34:03.1010011Z (Reading database ... 35% 2021-05-17T21:34:03.1010940Z (Reading database ... 40% 2021-05-17T21:34:03.1011680Z (Reading database ... 45% 2021-05-17T21:34:03.1012436Z (Reading database ... 50% 2021-05-17T21:34:03.1048118Z (Reading database ... 55% 2021-05-17T21:34:03.1086819Z (Reading database ... 60% 2021-05-17T21:34:03.1125671Z (Reading database ... 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librhash0:amd64. 2021-05-17T21:34:03.9111104Z Preparing to unpack .../librhash0_1.3.9-1_amd64.deb ... 2021-05-17T21:34:03.9124398Z Unpacking librhash0:amd64 (1.3.9-1) ... 2021-05-17T21:34:03.9570210Z Selecting previously unselected package cmake. 2021-05-17T21:34:03.9871509Z Preparing to unpack .../cmake_3.16.3-1ubuntu1_amd64.deb ... 2021-05-17T21:34:04.0007583Z Unpacking cmake (3.16.3-1ubuntu1) ... 2021-05-17T21:34:04.4378145Z Setting up librhash0:amd64 (1.3.9-1) ... 2021-05-17T21:34:04.4430484Z Setting up cmake-data (3.16.3-1ubuntu1) ... 2021-05-17T21:34:04.4889183Z Setting up libjsoncpp1:amd64 (1.7.4-3.1ubuntu2) ... 2021-05-17T21:34:04.4928142Z Setting up cmake (3.16.3-1ubuntu1) ... 2021-05-17T21:34:04.4971528Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:05.6680486Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:07.9668915Z Reading package lists... 2021-05-17T21:34:08.1344681Z Building dependency tree... 2021-05-17T21:34:08.1363789Z Reading state information... 2021-05-17T21:34:08.2849597Z Suggested packages: 2021-05-17T21:34:08.2851976Z libssh-doc 2021-05-17T21:34:08.3324566Z The following NEW packages will be installed: 2021-05-17T21:34:08.3326150Z libssh-dev 2021-05-17T21:34:08.3522257Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:08.3523136Z Need to get 219 kB of archives. 2021-05-17T21:34:08.3523843Z After this operation, 1127 kB of additional disk space will be used. 2021-05-17T21:34:08.3525843Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-dev amd64 0.9.3-2ubuntu2.1 [219 kB] 2021-05-17T21:34:08.7813021Z Fetched 219 kB in 0s (10.8 MB/s) 2021-05-17T21:34:08.8140574Z Selecting previously unselected package libssh-dev:amd64. 2021-05-17T21:34:08.8209583Z (Reading database ... 2021-05-17T21:34:08.8210456Z (Reading database ... 5% 2021-05-17T21:34:08.8211197Z (Reading database ... 10% 2021-05-17T21:34:08.8211904Z (Reading database ... 15% 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and directories currently installed.) 2021-05-17T21:34:08.9471655Z Preparing to unpack .../libssh-dev_0.9.3-2ubuntu2.1_amd64.deb ... 2021-05-17T21:34:08.9490829Z Unpacking libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T21:34:09.0394528Z Setting up libssh-dev:amd64 (0.9.3-2ubuntu2.1) ... 2021-05-17T21:34:11.2245626Z Reading package lists... 2021-05-17T21:34:11.4027230Z Building dependency tree... 2021-05-17T21:34:11.4050216Z Reading state information... 2021-05-17T21:34:11.6158492Z The following NEW packages will be installed: 2021-05-17T21:34:11.6161668Z jags 2021-05-17T21:34:11.6333354Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:11.6334627Z Need to get 1562 kB of archives. 2021-05-17T21:34:11.6335923Z After this operation, 3615 kB of additional disk space will be used. 2021-05-17T21:34:11.6338490Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 jags amd64 4.3.0-3build1 [1562 kB] 2021-05-17T21:34:12.1352924Z Fetched 1562 kB in 0s (15.5 MB/s) 2021-05-17T21:34:12.1696239Z Selecting previously unselected package jags. 2021-05-17T21:34:12.1771202Z (Reading database ... 2021-05-17T21:34:12.1771948Z (Reading database ... 5% 2021-05-17T21:34:12.1772652Z (Reading database ... 10% 2021-05-17T21:34:12.1773162Z (Reading database ... 15% 2021-05-17T21:34:12.1773646Z (Reading database ... 20% 2021-05-17T21:34:12.1774140Z (Reading database ... 25% 2021-05-17T21:34:12.1774621Z (Reading database ... 30% 2021-05-17T21:34:12.1775119Z (Reading database ... 35% 2021-05-17T21:34:12.1775616Z (Reading database ... 40% 2021-05-17T21:34:12.1776094Z (Reading database ... 45% 2021-05-17T21:34:12.1776586Z (Reading database ... 50% 2021-05-17T21:34:12.1806573Z (Reading database ... 55% 2021-05-17T21:34:12.1848843Z (Reading database ... 60% 2021-05-17T21:34:12.1893359Z (Reading database ... 65% 2021-05-17T21:34:12.2019563Z (Reading database ... 70% 2021-05-17T21:34:12.2044274Z (Reading database ... 75% 2021-05-17T21:34:12.2412734Z (Reading database ... 80% 2021-05-17T21:34:12.2749576Z (Reading database ... 85% 2021-05-17T21:34:12.2896339Z (Reading database ... 90% 2021-05-17T21:34:12.2974208Z (Reading database ... 95% 2021-05-17T21:34:12.2974722Z (Reading database ... 100% 2021-05-17T21:34:12.2975508Z (Reading database ... 264783 files and directories currently installed.) 2021-05-17T21:34:12.3127435Z Preparing to unpack .../jags_4.3.0-3build1_amd64.deb ... 2021-05-17T21:34:12.3153980Z Unpacking jags (4.3.0-3build1) ... 2021-05-17T21:34:12.4922202Z Setting up jags (4.3.0-3build1) ... 2021-05-17T21:34:12.5119253Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:13.2821131Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:15.5268062Z Reading package lists... 2021-05-17T21:34:15.7034024Z Building dependency tree... 2021-05-17T21:34:15.7055486Z Reading state information... 2021-05-17T21:34:15.8720173Z The following additional packages will be installed: 2021-05-17T21:34:15.8721465Z libnode64 libuv1-dev 2021-05-17T21:34:15.9229508Z The following NEW packages will be installed: 2021-05-17T21:34:15.9231806Z libnode-dev libnode64 libuv1-dev 2021-05-17T21:34:15.9428455Z 0 upgraded, 3 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:15.9429136Z Need to get 6239 kB of archives. 2021-05-17T21:34:15.9429831Z After this operation, 24.9 MB of additional disk space will be used. 2021-05-17T21:34:15.9431476Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libuv1-dev amd64 1.34.2-1ubuntu1.1 [103 kB] 2021-05-17T21:34:15.9468817Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode64 amd64 10.19.0~dfsg-3ubuntu1 [5765 kB] 2021-05-17T21:34:16.0359993Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnode-dev amd64 10.19.0~dfsg-3ubuntu1 [370 kB] 2021-05-17T21:34:16.4767932Z Fetched 6239 kB in 0s (55.8 MB/s) 2021-05-17T21:34:16.5135339Z Selecting previously unselected package libuv1-dev:amd64. 2021-05-17T21:34:16.5228501Z (Reading database ... 2021-05-17T21:34:16.5229038Z (Reading database ... 5% 2021-05-17T21:34:16.5229970Z (Reading database ... 10% 2021-05-17T21:34:16.5231187Z (Reading database ... 15% 2021-05-17T21:34:16.5231690Z (Reading database ... 20% 2021-05-17T21:34:16.5232313Z (Reading database ... 25% 2021-05-17T21:34:16.5232905Z (Reading database ... 30% 2021-05-17T21:34:16.5233489Z (Reading database ... 35% 2021-05-17T21:34:16.5234053Z (Reading database ... 40% 2021-05-17T21:34:16.5234746Z (Reading database ... 45% 2021-05-17T21:34:16.5235329Z (Reading database ... 50% 2021-05-17T21:34:16.5274805Z (Reading database ... 55% 2021-05-17T21:34:16.5313995Z (Reading database ... 60% 2021-05-17T21:34:16.5360321Z (Reading database ... 65% 2021-05-17T21:34:16.5493580Z (Reading database ... 70% 2021-05-17T21:34:16.5523775Z (Reading database ... 75% 2021-05-17T21:34:16.5921687Z (Reading database ... 80% 2021-05-17T21:34:16.6281470Z (Reading database ... 85% 2021-05-17T21:34:16.6438847Z (Reading database ... 90% 2021-05-17T21:34:16.6525191Z (Reading database ... 95% 2021-05-17T21:34:16.6525735Z (Reading database ... 100% 2021-05-17T21:34:16.6526442Z (Reading database ... 264923 files and directories currently installed.) 2021-05-17T21:34:16.6684231Z Preparing to unpack .../libuv1-dev_1.34.2-1ubuntu1.1_amd64.deb ... 2021-05-17T21:34:16.6698084Z Unpacking libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T21:34:16.7077516Z Selecting previously unselected package libnode64:amd64. 2021-05-17T21:34:16.7382971Z Preparing to unpack .../libnode64_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T21:34:16.7413963Z Unpacking libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:34:17.4351782Z Selecting previously unselected package libnode-dev:amd64. 2021-05-17T21:34:17.4658620Z Preparing to unpack .../libnode-dev_10.19.0~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T21:34:17.4676877Z Unpacking libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:34:17.5648974Z Setting up libuv1-dev:amd64 (1.34.2-1ubuntu1.1) ... 2021-05-17T21:34:17.5784567Z Setting up libnode64:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:34:17.5789396Z Setting up libnode-dev:amd64 (10.19.0~dfsg-3ubuntu1) ... 2021-05-17T21:34:17.5816049Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:19.7024657Z Reading package lists... 2021-05-17T21:34:19.8485530Z Building dependency tree... 2021-05-17T21:34:19.8505282Z Reading state information... 2021-05-17T21:34:20.0053961Z The following additional packages will be installed: 2021-05-17T21:34:20.0057243Z libfftw3-bin libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T21:34:20.0062772Z Suggested packages: 2021-05-17T21:34:20.0063439Z libfftw3-doc 2021-05-17T21:34:20.0505504Z The following NEW packages will be installed: 2021-05-17T21:34:20.0509507Z libfftw3-bin libfftw3-dev libfftw3-long3 libfftw3-quad3 libfftw3-single3 2021-05-17T21:34:20.0706133Z 0 upgraded, 5 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:20.0707242Z Need to get 3986 kB of archives. 2021-05-17T21:34:20.0707952Z After this operation, 22.4 MB of additional disk space will be used. 2021-05-17T21:34:20.0709594Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-long3 amd64 3.3.8-2ubuntu1 [313 kB] 2021-05-17T21:34:20.0786899Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-quad3 amd64 3.3.8-2ubuntu1 [673 kB] 2021-05-17T21:34:20.0899090Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-single3 amd64 3.3.8-2ubuntu1 [756 kB] 2021-05-17T21:34:20.1094059Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-bin amd64 3.3.8-2ubuntu1 [32.2 kB] 2021-05-17T21:34:20.1107832Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libfftw3-dev amd64 3.3.8-2ubuntu1 [2211 kB] 2021-05-17T21:34:20.5418626Z Fetched 3986 kB in 0s (46.4 MB/s) 2021-05-17T21:34:20.5735243Z Selecting previously unselected package libfftw3-long3:amd64. 2021-05-17T21:34:20.5808498Z (Reading database ... 2021-05-17T21:34:20.5809347Z (Reading database ... 5% 2021-05-17T21:34:20.5810031Z (Reading database ... 10% 2021-05-17T21:34:20.5810697Z (Reading database ... 15% 2021-05-17T21:34:20.5811361Z (Reading database ... 20% 2021-05-17T21:34:20.5812111Z (Reading database ... 25% 2021-05-17T21:34:20.5812784Z (Reading database ... 30% 2021-05-17T21:34:20.5813447Z (Reading database ... 35% 2021-05-17T21:34:20.5814092Z (Reading database ... 40% 2021-05-17T21:34:20.5814741Z (Reading database ... 45% 2021-05-17T21:34:20.5815393Z (Reading database ... 50% 2021-05-17T21:34:20.5848223Z (Reading database ... 55% 2021-05-17T21:34:20.5885338Z (Reading database ... 60% 2021-05-17T21:34:20.5919370Z (Reading database ... 65% 2021-05-17T21:34:20.6037820Z (Reading database ... 70% 2021-05-17T21:34:20.6123502Z (Reading database ... 75% 2021-05-17T21:34:20.6403142Z (Reading database ... 80% 2021-05-17T21:34:20.6699122Z (Reading database ... 85% 2021-05-17T21:34:20.6844433Z (Reading database ... 90% 2021-05-17T21:34:20.6922472Z (Reading database ... 95% 2021-05-17T21:34:20.6925003Z (Reading database ... 100% 2021-05-17T21:34:20.6925698Z (Reading database ... 265059 files and directories currently installed.) 2021-05-17T21:34:20.7063134Z Preparing to unpack .../libfftw3-long3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:34:20.7100577Z Unpacking libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:20.7697449Z Selecting previously unselected package libfftw3-quad3:amd64. 2021-05-17T21:34:20.7938395Z Preparing to unpack .../libfftw3-quad3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:34:20.7958327Z Unpacking libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:20.8904797Z Selecting previously unselected package libfftw3-single3:amd64. 2021-05-17T21:34:20.9166739Z Preparing to unpack .../libfftw3-single3_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:34:20.9189770Z Unpacking libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.1744604Z Selecting previously unselected package libfftw3-bin. 2021-05-17T21:34:21.2021048Z Preparing to unpack .../libfftw3-bin_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:34:21.2034007Z Unpacking libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.2423570Z Selecting previously unselected package libfftw3-dev:amd64. 2021-05-17T21:34:21.2638247Z Preparing to unpack .../libfftw3-dev_3.3.8-2ubuntu1_amd64.deb ... 2021-05-17T21:34:21.2651893Z Unpacking libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.5656496Z Setting up libfftw3-single3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.5690538Z Setting up libfftw3-long3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.5742863Z Setting up libfftw3-quad3:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.5791616Z Setting up libfftw3-bin (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.5824248Z Setting up libfftw3-dev:amd64 (3.3.8-2ubuntu1) ... 2021-05-17T21:34:21.5873380Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:22.3553525Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:24.4385482Z Reading package lists... 2021-05-17T21:34:24.5807200Z Building dependency tree... 2021-05-17T21:34:25.5009038Z Reading state information... 2021-05-17T21:34:25.5016805Z The following additional packages will be installed: 2021-05-17T21:34:25.5017614Z libdcmtk14 2021-05-17T21:34:25.5018711Z The following NEW packages will be installed: 2021-05-17T21:34:25.5019639Z dcmtk libdcmtk14 2021-05-17T21:34:25.5020452Z 0 upgraded, 2 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:25.5021830Z Need to get 5546 kB of archives. 2021-05-17T21:34:25.5022959Z After this operation, 26.5 MB of additional disk space will be used. 2021-05-17T21:34:25.5025568Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdcmtk14 amd64 3.6.4-2.1build2 [4682 kB] 2021-05-17T21:34:25.5027549Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 dcmtk amd64 3.6.4-2.1build2 [864 kB] 2021-05-17T21:34:25.5029294Z Fetched 5546 kB in 0s (59.0 MB/s) 2021-05-17T21:34:25.5030119Z Selecting previously unselected package libdcmtk14. 2021-05-17T21:34:25.5031397Z (Reading database ... 2021-05-17T21:34:25.5032025Z (Reading database ... 5% 2021-05-17T21:34:25.5032580Z (Reading database ... 10% 2021-05-17T21:34:25.5033131Z (Reading database ... 15% 2021-05-17T21:34:25.5033682Z (Reading database ... 20% 2021-05-17T21:34:25.5034288Z (Reading database ... 25% 2021-05-17T21:34:25.5034846Z (Reading database ... 30% 2021-05-17T21:34:25.5035380Z (Reading database ... 35% 2021-05-17T21:34:25.5035926Z (Reading database ... 40% 2021-05-17T21:34:25.5036478Z (Reading database ... 45% 2021-05-17T21:34:25.5037238Z (Reading database ... 50% 2021-05-17T21:34:25.5038168Z (Reading database ... 55% 2021-05-17T21:34:25.5038772Z (Reading database ... 60% 2021-05-17T21:34:25.5039354Z (Reading database ... 65% 2021-05-17T21:34:25.5039944Z (Reading database ... 70% 2021-05-17T21:34:25.5040692Z (Reading database ... 75% 2021-05-17T21:34:25.5041306Z (Reading database ... 80% 2021-05-17T21:34:25.5041881Z (Reading database ... 85% 2021-05-17T21:34:25.5042460Z (Reading database ... 90% 2021-05-17T21:34:25.5043188Z (Reading database ... 95% 2021-05-17T21:34:25.5043739Z (Reading database ... 100% 2021-05-17T21:34:25.5044568Z (Reading database ... 265150 files and directories currently installed.) 2021-05-17T21:34:25.5045880Z Preparing to unpack .../libdcmtk14_3.6.4-2.1build2_amd64.deb ... 2021-05-17T21:34:25.5046910Z Unpacking libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T21:34:25.9389783Z Selecting previously unselected package dcmtk. 2021-05-17T21:34:25.9670697Z Preparing to unpack .../dcmtk_3.6.4-2.1build2_amd64.deb ... 2021-05-17T21:34:25.9735614Z Unpacking dcmtk (3.6.4-2.1build2) ... 2021-05-17T21:34:26.1225301Z Setting up libdcmtk14 (3.6.4-2.1build2) ... 2021-05-17T21:34:26.1334266Z Setting up dcmtk (3.6.4-2.1build2) ... 2021-05-17T21:34:26.1594139Z Adding `dcmtk' group to system ... 2021-05-17T21:34:26.2515637Z Adding `dcmtk' user to system ... 2021-05-17T21:34:26.5238407Z adduser: Warning: The home directory `/var/lib/dcmtk/db' does not belong to the user you are currently creating. 2021-05-17T21:34:26.7965291Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:28.3649645Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:30.6093503Z Reading package lists... 2021-05-17T21:34:30.7770552Z Building dependency tree... 2021-05-17T21:34:30.7791691Z Reading state information... 2021-05-17T21:34:31.0070696Z libsecret-1-dev is already the newest version (0.20.3-0ubuntu1). 2021-05-17T21:34:31.0072273Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:31.0750235Z Reading package lists... 2021-05-17T21:34:31.2412025Z Building dependency tree... 2021-05-17T21:34:31.2466248Z Reading state information... 2021-05-17T21:34:31.4988607Z libpng-dev is already the newest version (1.6.37-2). 2021-05-17T21:34:31.4990047Z libpng-dev set to manually installed. 2021-05-17T21:34:31.4991070Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:31.5671345Z Reading package lists... 2021-05-17T21:34:31.7425069Z Building dependency tree... 2021-05-17T21:34:31.7449771Z Reading state information... 2021-05-17T21:34:31.8987705Z The following additional packages will be installed: 2021-05-17T21:34:31.8989844Z libopenjp2-7 libpoppler-cpp0v5 libpoppler-dev libpoppler97 poppler-data 2021-05-17T21:34:31.8994378Z Suggested packages: 2021-05-17T21:34:31.8995878Z poppler-utils ghostscript fonts-japanese-mincho | fonts-ipafont-mincho 2021-05-17T21:34:31.8997744Z fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai 2021-05-17T21:34:31.8999514Z fonts-arphic-uming fonts-nanum 2021-05-17T21:34:31.9512173Z The following NEW packages will be installed: 2021-05-17T21:34:31.9514701Z libopenjp2-7 libpoppler-cpp-dev libpoppler-cpp0v5 libpoppler-dev 2021-05-17T21:34:31.9516222Z libpoppler97 poppler-data 2021-05-17T21:34:31.9746506Z 0 upgraded, 6 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:31.9747757Z Need to get 2582 kB of archives. 2021-05-17T21:34:31.9748749Z After this operation, 16.7 MB of additional disk space will be used. 2021-05-17T21:34:31.9751792Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 poppler-data all 0.4.9-2 [1475 kB] 2021-05-17T21:34:32.0031164Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libopenjp2-7 amd64 2.3.1-1ubuntu4.20.04.1 [141 kB] 2021-05-17T21:34:32.0054930Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler97 amd64 0.86.1-0ubuntu1 [915 kB] 2021-05-17T21:34:32.0217905Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp0v5 amd64 0.86.1-0ubuntu1 [35.6 kB] 2021-05-17T21:34:32.0226445Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-dev amd64 0.86.1-0ubuntu1 [5336 B] 2021-05-17T21:34:32.0231743Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpoppler-cpp-dev amd64 0.86.1-0ubuntu1 [10.4 kB] 2021-05-17T21:34:32.4649931Z Fetched 2582 kB in 0s (38.5 MB/s) 2021-05-17T21:34:32.5009270Z Selecting previously unselected package poppler-data. 2021-05-17T21:34:32.5081808Z (Reading database ... 2021-05-17T21:34:32.5082760Z (Reading database ... 5% 2021-05-17T21:34:32.5083527Z (Reading database ... 10% 2021-05-17T21:34:32.5084293Z (Reading database ... 15% 2021-05-17T21:34:32.5085046Z (Reading database ... 20% 2021-05-17T21:34:32.5086005Z (Reading database ... 25% 2021-05-17T21:34:32.5086981Z (Reading database ... 30% 2021-05-17T21:34:32.5087715Z (Reading database ... 35% 2021-05-17T21:34:32.5088423Z (Reading database ... 40% 2021-05-17T21:34:32.5089323Z (Reading database ... 45% 2021-05-17T21:34:32.5090125Z (Reading database ... 50% 2021-05-17T21:34:32.5124797Z (Reading database ... 55% 2021-05-17T21:34:32.5161033Z (Reading database ... 60% 2021-05-17T21:34:32.5196521Z (Reading database ... 65% 2021-05-17T21:34:32.5335722Z (Reading database ... 70% 2021-05-17T21:34:32.5453320Z (Reading database ... 75% 2021-05-17T21:34:32.5724139Z (Reading database ... 80% 2021-05-17T21:34:32.6058786Z (Reading database ... 85% 2021-05-17T21:34:32.6228941Z (Reading database ... 90% 2021-05-17T21:34:32.6308261Z (Reading database ... 95% 2021-05-17T21:34:32.6309110Z (Reading database ... 100% 2021-05-17T21:34:32.6309906Z (Reading database ... 265385 files and directories currently installed.) 2021-05-17T21:34:32.6464795Z Preparing to unpack .../0-poppler-data_0.4.9-2_all.deb ... 2021-05-17T21:34:32.6478538Z Unpacking poppler-data (0.4.9-2) ... 2021-05-17T21:34:32.9346308Z Selecting previously unselected package libopenjp2-7:amd64. 2021-05-17T21:34:32.9678449Z Preparing to unpack .../1-libopenjp2-7_2.3.1-1ubuntu4.20.04.1_amd64.deb ... 2021-05-17T21:34:32.9723093Z Unpacking libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T21:34:33.0304319Z Selecting previously unselected package libpoppler97:amd64. 2021-05-17T21:34:33.0550305Z Preparing to unpack .../2-libpoppler97_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:34:33.0570173Z Unpacking libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.1945199Z Selecting previously unselected package libpoppler-cpp0v5:amd64. 2021-05-17T21:34:33.2210102Z Preparing to unpack .../3-libpoppler-cpp0v5_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:34:33.2226843Z Unpacking libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.2625468Z Selecting previously unselected package libpoppler-dev:amd64. 2021-05-17T21:34:33.2898332Z Preparing to unpack .../4-libpoppler-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:34:33.2912299Z Unpacking libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.3225072Z Selecting previously unselected package libpoppler-cpp-dev:amd64. 2021-05-17T21:34:33.3565164Z Preparing to unpack .../5-libpoppler-cpp-dev_0.86.1-0ubuntu1_amd64.deb ... 2021-05-17T21:34:33.3583793Z Unpacking libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.4271726Z Setting up poppler-data (0.4.9-2) ... 2021-05-17T21:34:33.4467363Z Setting up libopenjp2-7:amd64 (2.3.1-1ubuntu4.20.04.1) ... 2021-05-17T21:34:33.4508973Z Setting up libpoppler97:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.4551669Z Setting up libpoppler-cpp0v5:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.4584890Z Setting up libpoppler-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.4621559Z Setting up libpoppler-cpp-dev:amd64 (0.86.1-0ubuntu1) ... 2021-05-17T21:34:33.4684521Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T21:34:33.6382756Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:35.8499971Z Reading package lists... 2021-05-17T21:34:36.0034041Z Building dependency tree... 2021-05-17T21:34:36.0054392Z Reading state information... 2021-05-17T21:34:36.1654911Z The following additional packages will be installed: 2021-05-17T21:34:36.1659659Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libsz2 2021-05-17T21:34:36.1666655Z Suggested packages: 2021-05-17T21:34:36.1667867Z libhdf5-doc 2021-05-17T21:34:36.2128164Z The following NEW packages will be installed: 2021-05-17T21:34:36.2131498Z hdf5-helpers libaec-dev libaec0 libhdf5-103 libhdf5-cpp-103 libhdf5-dev 2021-05-17T21:34:36.2133571Z libsz2 2021-05-17T21:34:36.2329121Z 0 upgraded, 7 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:36.2330045Z Need to get 4074 kB of archives. 2021-05-17T21:34:36.2330778Z After this operation, 17.6 MB of additional disk space will be used. 2021-05-17T21:34:36.2332893Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 hdf5-helpers amd64 1.10.4+repack-11ubuntu1 [13.6 kB] 2021-05-17T21:34:36.2359928Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec0 amd64 1.0.4-1 [19.1 kB] 2021-05-17T21:34:36.2364530Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsz2 amd64 1.0.4-1 [5188 B] 2021-05-17T21:34:36.2373129Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-103 amd64 1.10.4+repack-11ubuntu1 [1311 kB] 2021-05-17T21:34:36.2739629Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-cpp-103 amd64 1.10.4+repack-11ubuntu1 [120 kB] 2021-05-17T21:34:36.2763477Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaec-dev amd64 1.0.4-1 [16.9 kB] 2021-05-17T21:34:36.2773099Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf5-dev amd64 1.10.4+repack-11ubuntu1 [2589 kB] 2021-05-17T21:34:36.7657665Z Fetched 4074 kB in 0s (33.0 MB/s) 2021-05-17T21:34:36.7974031Z Selecting previously unselected package hdf5-helpers. 2021-05-17T21:34:36.8046930Z (Reading database ... 2021-05-17T21:34:36.8047957Z (Reading database ... 5% 2021-05-17T21:34:36.8048723Z (Reading database ... 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2021-05-17T21:34:36.9276792Z (Reading database ... 265945 files and directories currently installed.) 2021-05-17T21:34:36.9435358Z Preparing to unpack .../0-hdf5-helpers_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:34:36.9459620Z Unpacking hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:36.9863931Z Selecting previously unselected package libaec0:amd64. 2021-05-17T21:34:37.0099882Z Preparing to unpack .../1-libaec0_1.0.4-1_amd64.deb ... 2021-05-17T21:34:37.0126287Z Unpacking libaec0:amd64 (1.0.4-1) ... 2021-05-17T21:34:37.0423812Z Selecting previously unselected package libsz2:amd64. 2021-05-17T21:34:37.0683426Z Preparing to unpack .../2-libsz2_1.0.4-1_amd64.deb ... 2021-05-17T21:34:37.0696295Z Unpacking libsz2:amd64 (1.0.4-1) ... 2021-05-17T21:34:37.1020079Z Selecting previously unselected package libhdf5-103:amd64. 2021-05-17T21:34:37.1377255Z Preparing to unpack .../3-libhdf5-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:34:37.1392813Z Unpacking libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.3025598Z Selecting previously unselected package libhdf5-cpp-103:amd64. 2021-05-17T21:34:37.3307407Z Preparing to unpack .../4-libhdf5-cpp-103_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:34:37.3320047Z Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.3683432Z Selecting previously unselected package libaec-dev:amd64. 2021-05-17T21:34:37.3998051Z Preparing to unpack .../5-libaec-dev_1.0.4-1_amd64.deb ... 2021-05-17T21:34:37.4009450Z Unpacking libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T21:34:37.4266663Z Selecting previously unselected package libhdf5-dev. 2021-05-17T21:34:37.4572441Z Preparing to unpack .../6-libhdf5-dev_1.10.4+repack-11ubuntu1_amd64.deb ... 2021-05-17T21:34:37.4583534Z Unpacking libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.7879775Z Setting up hdf5-helpers (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.7920103Z Setting up libaec0:amd64 (1.0.4-1) ... 2021-05-17T21:34:37.8030657Z Setting up libsz2:amd64 (1.0.4-1) ... 2021-05-17T21:34:37.8072175Z Setting up libaec-dev:amd64 (1.0.4-1) ... 2021-05-17T21:34:37.8115050Z Setting up libhdf5-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.8153948Z Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.8193469Z Setting up libhdf5-dev (1.10.4+repack-11ubuntu1) ... 2021-05-17T21:34:37.8279295Z update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode 2021-05-17T21:34:37.8316308Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:38.6012650Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:40.7336820Z Reading package lists... 2021-05-17T21:34:40.8900772Z Building dependency tree... 2021-05-17T21:34:40.8922117Z Reading state information... 2021-05-17T21:34:41.0377833Z The following additional packages will be installed: 2021-05-17T21:34:41.0383606Z libdrm-dev libgl-dev libglu1-mesa libglx-dev 2021-05-17T21:34:41.0875158Z The following NEW packages will be installed: 2021-05-17T21:34:41.0878835Z libdrm-dev libgl-dev libglu1-mesa libglu1-mesa-dev libglx-dev 2021-05-17T21:34:41.0880437Z mesa-common-dev 2021-05-17T21:34:41.1127800Z 0 upgraded, 6 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:41.1128433Z Need to get 1761 kB of archives. 2021-05-17T21:34:41.1129118Z After this operation, 5442 kB of additional disk space will be used. 2021-05-17T21:34:41.1130792Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libdrm-dev amd64 2.4.102-1ubuntu1~20.04.1 [126 kB] 2021-05-17T21:34:41.1183760Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libglx-dev amd64 1.3.2-1~ubuntu0.20.04.1 [14.0 kB] 2021-05-17T21:34:41.1190871Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgl-dev amd64 1.3.2-1~ubuntu0.20.04.1 [97.8 kB] 2021-05-17T21:34:41.1209278Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa amd64 9.0.1-1build1 [168 kB] 2021-05-17T21:34:41.1241960Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libglu1-mesa-dev amd64 9.0.1-1build1 [207 kB] 2021-05-17T21:34:41.1280738Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-common-dev amd64 20.2.6-0ubuntu0.20.04.1 [1148 kB] 2021-05-17T21:34:41.5565509Z Fetched 1761 kB in 0s (34.3 MB/s) 2021-05-17T21:34:41.5849384Z Selecting previously unselected package libdrm-dev:amd64. 2021-05-17T21:34:41.5928550Z (Reading database ... 2021-05-17T21:34:41.5929224Z (Reading database ... 5% 2021-05-17T21:34:41.5929825Z (Reading database ... 10% 2021-05-17T21:34:41.5930382Z (Reading database ... 15% 2021-05-17T21:34:41.5930949Z (Reading database ... 20% 2021-05-17T21:34:41.5931667Z (Reading database ... 25% 2021-05-17T21:34:41.5932251Z (Reading database ... 30% 2021-05-17T21:34:41.5932793Z (Reading 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(2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T21:34:41.7608140Z Selecting previously unselected package libglx-dev:amd64. 2021-05-17T21:34:41.7916211Z Preparing to unpack .../1-libglx-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:34:41.7932715Z Unpacking libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:41.8304103Z Selecting previously unselected package libgl-dev:amd64. 2021-05-17T21:34:41.8578505Z Preparing to unpack .../2-libgl-dev_1.3.2-1~ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:34:41.8596985Z Unpacking libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:41.9064524Z Selecting previously unselected package libglu1-mesa:amd64. 2021-05-17T21:34:41.9291605Z Preparing to unpack .../3-libglu1-mesa_9.0.1-1build1_amd64.deb ... 2021-05-17T21:34:41.9317561Z Unpacking libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:41.9717271Z Selecting previously unselected package libglu1-mesa-dev:amd64. 2021-05-17T21:34:42.0042381Z Preparing to unpack .../4-libglu1-mesa-dev_9.0.1-1build1_amd64.deb ... 2021-05-17T21:34:42.0063846Z Unpacking libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:42.0544323Z Selecting previously unselected package mesa-common-dev:amd64. 2021-05-17T21:34:42.0828555Z Preparing to unpack .../5-mesa-common-dev_20.2.6-0ubuntu0.20.04.1_amd64.deb ... 2021-05-17T21:34:42.0857315Z Unpacking mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:34:42.2615340Z Setting up libdrm-dev:amd64 (2.4.102-1ubuntu1~20.04.1) ... 2021-05-17T21:34:42.2672887Z Setting up libglx-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:42.2714493Z Setting up libglu1-mesa:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:42.2754181Z Setting up libgl-dev:amd64 (1.3.2-1~ubuntu0.20.04.1) ... 2021-05-17T21:34:42.2787208Z Setting up libglu1-mesa-dev:amd64 (9.0.1-1build1) ... 2021-05-17T21:34:42.2850850Z Setting up mesa-common-dev:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:34:43.0071703Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:43.6325938Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:45.7979753Z Reading package lists... 2021-05-17T21:34:45.9536751Z Building dependency tree... 2021-05-17T21:34:45.9557051Z Reading state information... 2021-05-17T21:34:46.1035743Z The following additional packages will be installed: 2021-05-17T21:34:46.1037612Z libprotobuf-lite17 libprotoc17 2021-05-17T21:34:46.1503409Z The following NEW packages will be installed: 2021-05-17T21:34:46.1505953Z libprotobuf-dev libprotobuf-lite17 libprotoc-dev libprotoc17 2021-05-17T21:34:46.1507189Z protobuf-compiler 2021-05-17T21:34:46.1705763Z 0 upgraded, 5 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:46.1706414Z Need to get 2754 kB of archives. 2021-05-17T21:34:46.1707078Z After this operation, 19.9 MB of additional disk space will be used. 2021-05-17T21:34:46.1708623Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-lite17 amd64 3.6.1.3-2ubuntu5 [132 kB] 2021-05-17T21:34:46.1767863Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc17 amd64 3.6.1.3-2ubuntu5 [646 kB] 2021-05-17T21:34:46.1937315Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotobuf-dev amd64 3.6.1.3-2ubuntu5 [1155 kB] 2021-05-17T21:34:46.2320582Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libprotoc-dev amd64 3.6.1.3-2ubuntu5 [793 kB] 2021-05-17T21:34:46.2532937Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 protobuf-compiler amd64 3.6.1.3-2ubuntu5 [27.6 kB] 2021-05-17T21:34:46.6547686Z Fetched 2754 kB in 0s (27.9 MB/s) 2021-05-17T21:34:46.6869954Z Selecting previously unselected package libprotobuf-lite17:amd64. 2021-05-17T21:34:46.6938956Z (Reading database ... 2021-05-17T21:34:46.6939453Z (Reading database ... 5% 2021-05-17T21:34:46.6939905Z (Reading database ... 10% 2021-05-17T21:34:46.6940352Z (Reading database ... 15% 2021-05-17T21:34:46.6940779Z (Reading 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2021-05-17T21:34:46.8351673Z Preparing to unpack .../libprotobuf-lite17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:46.8402348Z Unpacking libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:46.8904379Z Selecting previously unselected package libprotoc17:amd64. 2021-05-17T21:34:46.9120415Z Preparing to unpack .../libprotoc17_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:46.9133802Z Unpacking libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.0074233Z Selecting previously unselected package libprotobuf-dev:amd64. 2021-05-17T21:34:47.0335803Z Preparing to unpack .../libprotobuf-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:47.0363857Z Unpacking libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.1967085Z Selecting previously unselected package libprotoc-dev:amd64. 2021-05-17T21:34:47.2239858Z Preparing to unpack .../libprotoc-dev_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:47.2251968Z Unpacking libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.3425113Z Selecting previously unselected package protobuf-compiler. 2021-05-17T21:34:47.3668081Z Preparing to unpack .../protobuf-compiler_3.6.1.3-2ubuntu5_amd64.deb ... 2021-05-17T21:34:47.3691301Z Unpacking protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.4299334Z Setting up libprotoc17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.4356443Z Setting up protobuf-compiler (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.4400280Z Setting up libprotobuf-lite17:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.4457222Z Setting up libprotobuf-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.4496442Z Setting up libprotoc-dev:amd64 (3.6.1.3-2ubuntu5) ... 2021-05-17T21:34:47.4550901Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:34:48.1774151Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:34:50.2339935Z Reading package lists... 2021-05-17T21:34:50.3700640Z Building dependency tree... 2021-05-17T21:34:50.3718156Z Reading state information... 2021-05-17T21:34:50.5146514Z The following additional packages will be installed: 2021-05-17T21:34:50.5148638Z i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 libasyncns0 2021-05-17T21:34:50.5150078Z libavc1394-0 libavcodec58 libavdevice58 libavfilter7 libavformat58 2021-05-17T21:34:50.5151229Z libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 libcaca0 2021-05-17T21:34:50.5152586Z libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 libcodec2-0.9 2021-05-17T21:34:50.5154002Z libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 libigdgmm11 2021-05-17T21:34:50.5155278Z libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T21:34:50.5156829Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T21:34:50.5158302Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T21:34:50.5159844Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T21:34:50.5162144Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T21:34:50.5164712Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T21:34:50.5167944Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T21:34:50.5168934Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T21:34:50.5169905Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T21:34:50.5170496Z Suggested packages: 2021-05-17T21:34:50.5171384Z ffmpeg-doc i965-va-driver-shaders libbluray-bdj jackd2 libportaudio2 2021-05-17T21:34:50.5172453Z opus-tools pulseaudio libraw1394-doc serdi sndiod sordi speex opencl-icd 2021-05-17T21:34:50.5173618Z libvdpau-va-gl1 nvidia-vdpau-driver nvidia-legacy-340xx-vdpau-driver 2021-05-17T21:34:50.5174678Z nvidia-legacy-304xx-vdpau-driver 2021-05-17T21:34:50.5866688Z The following NEW packages will be installed: 2021-05-17T21:34:50.5870494Z ffmpeg i965-va-driver intel-media-va-driver libaacs0 libaom0 libass9 2021-05-17T21:34:50.5871628Z libasyncns0 libavc1394-0 libavcodec58 libavdevice58 libavfilter7 2021-05-17T21:34:50.5874638Z libavformat58 libavresample4 libavutil56 libbdplus0 libbluray2 libbs2b0 2021-05-17T21:34:50.5877491Z libcaca0 libcdio-cdda2 libcdio-paranoia2 libcdio18 libchromaprint1 2021-05-17T21:34:50.5880273Z libcodec2-0.9 libdc1394-22 libflac8 libflite1 libgme0 libgsm1 libiec61883-0 2021-05-17T21:34:50.5882811Z libigdgmm11 libjack-jackd2-0 liblilv-0-0 libmp3lame0 libmpg123-0 libmysofa1 2021-05-17T21:34:50.5885136Z libopenal-data libopenal1 libopenmpt0 libopus0 libpostproc55 libpulse0 2021-05-17T21:34:50.5888494Z libraw1394-11 librubberband2 libsamplerate0 libsdl2-2.0-0 libserd-0-0 2021-05-17T21:34:50.5899175Z libshine3 libsnappy1v5 libsndfile1 libsndio7.0 libsord-0-0 libsoxr0 2021-05-17T21:34:50.5902821Z libspeex1 libsratom-0-0 libssh-gcrypt-4 libswresample3 libswscale5 2021-05-17T21:34:50.5904041Z libtheora0 libtwolame0 libva-drm2 libva-x11-2 libva2 libvdpau1 libvidstab1.1 2021-05-17T21:34:50.5906561Z libvorbisenc2 libwavpack1 libx264-155 libx265-179 libxvidcore4 2021-05-17T21:34:50.5910270Z libzvbi-common libzvbi0 mesa-va-drivers mesa-vdpau-drivers 2021-05-17T21:34:50.5914937Z ocl-icd-libopencl1 va-driver-all vdpau-driver-all 2021-05-17T21:34:50.6127353Z 0 upgraded, 76 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:34:50.6127984Z Need to get 47.1 MB of archives. 2021-05-17T21:34:50.6128628Z After this operation, 195 MB of additional disk space will be used. 2021-05-17T21:34:50.6130079Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaom0 amd64 1.0.0.errata1-3build1 [1160 kB] 2021-05-17T21:34:50.6342937Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva2 amd64 2.7.0-2 [53.5 kB] 2021-05-17T21:34:50.6358869Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-drm2 amd64 2.7.0-2 [7044 B] 2021-05-17T21:34:50.6368457Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libva-x11-2 amd64 2.7.0-2 [11.9 kB] 2021-05-17T21:34:50.6382141Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvdpau1 amd64 1.3-1ubuntu2 [25.6 kB] 2021-05-17T21:34:50.6386060Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 ocl-icd-libopencl1 amd64 2.2.11-1ubuntu1 [30.3 kB] 2021-05-17T21:34:50.6397020Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavutil56 amd64 7:4.2.4-1ubuntu0.1 [241 kB] 2021-05-17T21:34:50.6429455Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcodec2-0.9 amd64 0.9.2-2 [7886 kB] 2021-05-17T21:34:50.7853827Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgsm1 amd64 1.0.18-2 [24.4 kB] 2021-05-17T21:34:50.7872307Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmp3lame0 amd64 3.100-3 [133 kB] 2021-05-17T21:34:50.7891409Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libopus0 amd64 1.3.1-0ubuntu1 [191 kB] 2021-05-17T21:34:50.7923410Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libshine3 amd64 3.1.1-2 [23.2 kB] 2021-05-17T21:34:50.7938977Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsnappy1v5 amd64 1.1.8-1build1 [16.7 kB] 2021-05-17T21:34:50.7940842Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libspeex1 amd64 1.2~rc1.2-1.1ubuntu1 [53.2 kB] 2021-05-17T21:34:50.7951578Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsoxr0 amd64 0.1.3-2build1 [78.0 kB] 2021-05-17T21:34:50.7970304Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswresample3 amd64 7:4.2.4-1ubuntu0.1 [57.1 kB] 2021-05-17T21:34:50.7992795Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtheora0 amd64 1.1.1+dfsg.1-15ubuntu2 [162 kB] 2021-05-17T21:34:50.8033091Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libtwolame0 amd64 0.4.0-2 [47.6 kB] 2021-05-17T21:34:50.8051872Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvorbisenc2 amd64 1.3.6-2ubuntu1 [70.7 kB] 2021-05-17T21:34:50.8069711Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwavpack1 amd64 5.2.0-1ubuntu0.1 [77.3 kB] 2021-05-17T21:34:50.8090435Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx264-155 amd64 2:0.155.2917+git0a84d98-2 [521 kB] 2021-05-17T21:34:50.8202926Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libx265-179 amd64 3.2.1-1build1 [1060 kB] 2021-05-17T21:34:50.8424609Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxvidcore4 amd64 2:1.3.7-1 [201 kB] 2021-05-17T21:34:50.8468707Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi-common all 0.2.35-17 [32.5 kB] 2021-05-17T21:34:50.8482057Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzvbi0 amd64 0.2.35-17 [237 kB] 2021-05-17T21:34:50.8576797Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavcodec58 amd64 7:4.2.4-1ubuntu0.1 [4876 kB] 2021-05-17T21:34:51.2314300Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libraw1394-11 amd64 2.1.2-1 [30.7 kB] 2021-05-17T21:34:51.2331660Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavc1394-0 amd64 0.5.4-5 [16.2 kB] 2021-05-17T21:34:51.2343595Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libass9 amd64 1:0.14.0-2 [88.0 kB] 2021-05-17T21:34:51.2363986Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbluray2 amd64 1:1.2.0-1 [138 kB] 2021-05-17T21:34:51.2392510Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libchromaprint1 amd64 1.4.3-3build1 [37.6 kB] 2021-05-17T21:34:51.2403037Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgme0 amd64 0.6.2-1build1 [123 kB] 2021-05-17T21:34:51.2429695Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmpg123-0 amd64 1.25.13-1 [124 kB] 2021-05-17T21:34:51.2460701Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenmpt0 amd64 0.4.11-1build1 [599 kB] 2021-05-17T21:34:51.2565786Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libssh-gcrypt-4 amd64 0.9.3-2ubuntu2.1 [201 kB] 2021-05-17T21:34:51.2603104Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavformat58 amd64 7:4.2.4-1ubuntu0.1 [981 kB] 2021-05-17T21:34:51.2752805Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbs2b0 amd64 3.1.0+dfsg-2.2build1 [10.2 kB] 2021-05-17T21:34:51.2754982Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libflite1 amd64 2.1-release-3 [12.8 MB] 2021-05-17T21:34:51.5554791Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libserd-0-0 amd64 0.30.2-1 [46.6 kB] 2021-05-17T21:34:51.5608539Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsord-0-0 amd64 0.16.4-1 [19.5 kB] 2021-05-17T21:34:51.5618901Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsratom-0-0 amd64 0.6.4-1 [16.9 kB] 2021-05-17T21:34:51.5624492Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 liblilv-0-0 amd64 0.24.6-1ubuntu0.1 [40.6 kB] 2021-05-17T21:34:51.5631733Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmysofa1 amd64 1.0~dfsg0-1 [39.2 kB] 2021-05-17T21:34:51.5638892Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libpostproc55 amd64 7:4.2.4-1ubuntu0.1 [55.3 kB] 2021-05-17T21:34:51.5650111Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsamplerate0 amd64 0.1.9-2 [939 kB] 2021-05-17T21:34:51.5740825Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 librubberband2 amd64 1.8.2-1build1 [89.4 kB] 2021-05-17T21:34:51.5757941Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libswscale5 amd64 7:4.2.4-1ubuntu0.1 [156 kB] 2021-05-17T21:34:51.5779035Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libvidstab1.1 amd64 1.1.0-2 [35.0 kB] 2021-05-17T21:34:51.5788574Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavfilter7 amd64 7:4.2.4-1ubuntu0.1 [1084 kB] 2021-05-17T21:34:51.6118746Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcaca0 amd64 0.99.beta19-2.1ubuntu1.20.04.1 [202 kB] 2021-05-17T21:34:51.6165237Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio18 amd64 2.0.0-2 [58.6 kB] 2021-05-17T21:34:51.6174775Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-cdda2 amd64 10.2+2.0.0-1 [17.6 kB] 2021-05-17T21:34:51.6182626Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdio-paranoia2 amd64 10.2+2.0.0-1 [16.2 kB] 2021-05-17T21:34:51.6190606Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdc1394-22 amd64 2.2.5-2.1 [79.6 kB] 2021-05-17T21:34:51.6217134Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libiec61883-0 amd64 1.2.0-3 [24.3 kB] 2021-05-17T21:34:51.6227387Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjack-jackd2-0 amd64 1.9.12~dfsg-2ubuntu2 [267 kB] 2021-05-17T21:34:51.6293905Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal-data all 1:1.19.1-1 [162 kB] 2021-05-17T21:34:51.6325272Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsndio7.0 amd64 1.5.0-3 [24.5 kB] 2021-05-17T21:34:51.6381670Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libopenal1 amd64 1:1.19.1-1 [492 kB] 2021-05-17T21:34:51.6504817Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libasyncns0 amd64 0.8-6 [12.1 kB] 2021-05-17T21:34:51.6506952Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libflac8 amd64 1.3.3-1build1 [103 kB] 2021-05-17T21:34:51.6519200Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsndfile1 amd64 1.0.28-7 [170 kB] 2021-05-17T21:34:51.6556832Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libpulse0 amd64 1:13.99.1-1ubuntu3.10 [262 kB] 2021-05-17T21:34:51.6600413Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsdl2-2.0-0 amd64 2.0.10+dfsg1-3 [407 kB] 2021-05-17T21:34:51.6688230Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavdevice58 amd64 7:4.2.4-1ubuntu0.1 [74.3 kB] 2021-05-17T21:34:51.6709488Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libavresample4 amd64 7:4.2.4-1ubuntu0.1 [54.2 kB] 2021-05-17T21:34:51.6723234Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 ffmpeg amd64 7:4.2.4-1ubuntu0.1 [1453 kB] 2021-05-17T21:34:51.7001947Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libigdgmm11 amd64 20.1.1+ds1-1 [111 kB] 2021-05-17T21:34:51.7025148Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 intel-media-va-driver amd64 20.1.1+dfsg1-1 [1764 kB] 2021-05-17T21:34:51.7302137Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libaacs0 amd64 0.9.0-2 [50.1 kB] 2021-05-17T21:34:51.7315352Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbdplus0 amd64 0.1.2-3 [47.3 kB] 2021-05-17T21:34:51.7326132Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 mesa-va-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2618 kB] 2021-05-17T21:34:51.7740956Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 mesa-vdpau-drivers amd64 20.2.6-0ubuntu0.20.04.1 [2744 kB] 2021-05-17T21:34:51.8119557Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 i965-va-driver amd64 2.4.0-0ubuntu1 [924 kB] 2021-05-17T21:34:51.8244189Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 va-driver-all amd64 2.7.0-2 [4020 B] 2021-05-17T21:34:51.8246148Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 vdpau-driver-all amd64 1.3-1ubuntu2 [4596 B] 2021-05-17T21:34:52.4148842Z Fetched 47.1 MB in 1s (38.4 MB/s) 2021-05-17T21:34:52.4492459Z Selecting previously unselected package libaom0:amd64. 2021-05-17T21:34:52.4557834Z (Reading database ... 2021-05-17T21:34:52.4558340Z (Reading database ... 5% 2021-05-17T21:34:52.4558775Z (Reading database ... 10% 2021-05-17T21:34:52.4559197Z (Reading database ... 15% 2021-05-17T21:34:52.4559669Z (Reading database ... 20% 2021-05-17T21:34:52.4560103Z (Reading database ... 25% 2021-05-17T21:34:52.4560517Z (Reading database ... 30% 2021-05-17T21:34:52.4560940Z (Reading database ... 35% 2021-05-17T21:34:52.4561898Z (Reading database ... 40% 2021-05-17T21:34:52.4562343Z (Reading database ... 45% 2021-05-17T21:34:52.4562793Z (Reading database ... 50% 2021-05-17T21:34:52.4598011Z (Reading database ... 55% 2021-05-17T21:34:52.4628774Z (Reading database ... 60% 2021-05-17T21:34:52.4659413Z (Reading database ... 65% 2021-05-17T21:34:52.4766828Z (Reading database ... 70% 2021-05-17T21:34:52.4870342Z (Reading database ... 75% 2021-05-17T21:34:52.5109776Z (Reading database ... 80% 2021-05-17T21:34:52.5385119Z (Reading database ... 85% 2021-05-17T21:34:52.5518797Z (Reading database ... 90% 2021-05-17T21:34:52.5590584Z (Reading database ... 95% 2021-05-17T21:34:52.5591079Z (Reading database ... 100% 2021-05-17T21:34:52.5591932Z (Reading database ... 266807 files and directories currently installed.) 2021-05-17T21:34:52.5725593Z Preparing to unpack .../00-libaom0_1.0.0.errata1-3build1_amd64.deb ... 2021-05-17T21:34:52.5759878Z Unpacking libaom0:amd64 (1.0.0.errata1-3build1) ... 2021-05-17T21:34:52.7180736Z Selecting previously unselected package libva2:amd64. 2021-05-17T21:34:52.7478967Z Preparing to unpack .../01-libva2_2.7.0-2_amd64.deb ... 2021-05-17T21:34:52.7504315Z Unpacking libva2:amd64 (2.7.0-2) ... 2021-05-17T21:34:52.7855890Z Selecting previously unselected package libva-drm2:amd64. 2021-05-17T21:34:52.8160124Z Preparing to unpack .../02-libva-drm2_2.7.0-2_amd64.deb ... 2021-05-17T21:34:52.8179405Z Unpacking libva-drm2:amd64 (2.7.0-2) ... 2021-05-17T21:34:52.8483642Z Selecting previously unselected package libva-x11-2:amd64. 2021-05-17T21:34:52.8788315Z Preparing to unpack .../03-libva-x11-2_2.7.0-2_amd64.deb ... 2021-05-17T21:34:52.8807805Z Unpacking libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T21:34:52.9223226Z Selecting previously unselected package libvdpau1:amd64. 2021-05-17T21:34:52.9435643Z Preparing to unpack .../04-libvdpau1_1.3-1ubuntu2_amd64.deb ... 2021-05-17T21:34:52.9459770Z Unpacking libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T21:34:52.9904447Z Selecting previously unselected package ocl-icd-libopencl1:amd64. 2021-05-17T21:34:53.0184367Z Preparing to unpack .../05-ocl-icd-libopencl1_2.2.11-1ubuntu1_amd64.deb ... 2021-05-17T21:34:53.0197890Z Unpacking ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T21:34:53.0624007Z Selecting previously unselected package libavutil56:amd64. 2021-05-17T21:34:53.0889365Z Preparing to unpack .../06-libavutil56_7%3a4.2.4-1ubuntu0.1_amd64.deb ... 2021-05-17T21:34:53.0910695Z Unpacking libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:34:53.1502713Z Selecting previously unselected package libcodec2-0.9:amd64. 2021-05-17T21:34:53.1789232Z Preparing to unpack .../07-libcodec2-0.9_0.9.2-2_amd64.deb ... 2021-05-17T21:34:53.1800025Z Unpacking libcodec2-0.9:amd64 (0.9.2-2) ... 2021-05-17T21:34:53.8796328Z Selecting previously unselected package libgsm1:amd64. 2021-05-17T21:34:53.9138893Z Preparing to unpack .../08-libgsm1_1.0.18-2_amd64.deb ... 2021-05-17T21:34:53.9150246Z Unpacking libgsm1:amd64 (1.0.18-2) ... 2021-05-17T21:34:53.9533571Z Selecting previously unselected package libmp3lame0:amd64. 2021-05-17T21:34:53.9844160Z Preparing to unpack .../09-libmp3lame0_3.100-3_amd64.deb ... 2021-05-17T21:34:53.9859856Z Unpacking libmp3lame0:amd64 (3.100-3) ... 2021-05-17T21:34:54.0244382Z Selecting previously unselected package libopus0:amd64. 2021-05-17T21:34:54.0551127Z Preparing to unpack .../10-libopus0_1.3.1-0ubuntu1_amd64.deb ... 2021-05-17T21:34:54.0566913Z Unpacking libopus0:amd64 (1.3.1-0ubuntu1) ... 2021-05-17T21:34:54.1000316Z Selecting previously unselected package libshine3:amd64. 2021-05-17T21:34:54.1302528Z Preparing to unpack .../11-libshine3_3.1.1-2_amd64.deb ... 2021-05-17T21:34:54.1313024Z Unpacking libshine3:amd64 (3.1.1-2) ... 2021-05-17T21:34:54.1598333Z Selecting previously unselected package libsnappy1v5:amd64. 2021-05-17T21:34:54.1911777Z Preparing to unpack .../12-libsnappy1v5_1.1.8-1build1_amd64.deb ... 2021-05-17T21:34:54.1924932Z Unpacking libsnappy1v5:amd64 (1.1.8-1build1) ... 2021-05-17T21:34:54.2211204Z Selecting previously unselected package libspeex1:amd64. 2021-05-17T21:34:54.2523275Z Preparing to unpack .../13-libspeex1_1.2~rc1.2-1.1ubuntu1_amd64.deb ... 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Setting up ocl-icd-libopencl1:amd64 (2.2.11-1ubuntu1) ... 2021-05-17T21:35:01.6568982Z Setting up libasyncns0:amd64 (0.8-6) ... 2021-05-17T21:35:01.6611660Z Setting up libvdpau1:amd64 (1.3-1ubuntu2) ... 2021-05-17T21:35:01.6692878Z Setting up libwavpack1:amd64 (5.2.0-1ubuntu0.1) ... 2021-05-17T21:35:01.6752099Z Setting up libbs2b0:amd64 (3.1.0+dfsg-2.2build1) ... 2021-05-17T21:35:01.6797160Z Setting up libtheora0:amd64 (1.1.1+dfsg.1-15ubuntu2) ... 2021-05-17T21:35:01.6832347Z Setting up libopenal-data (1:1.19.1-1) ... 2021-05-17T21:35:01.6905731Z Setting up mesa-va-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:35:01.6960068Z Setting up libbluray2:amd64 (1:1.2.0-1) ... 2021-05-17T21:35:01.7014117Z Setting up libsamplerate0:amd64 (0.1.9-2) ... 2021-05-17T21:35:01.7069409Z Setting up libva-x11-2:amd64 (2.7.0-2) ... 2021-05-17T21:35:01.7119470Z Setting up libopenmpt0:amd64 (0.4.11-1build1) ... 2021-05-17T21:35:01.7176521Z Setting up libzvbi-common (0.2.35-17) ... 2021-05-17T21:35:01.7215194Z Setting up libmp3lame0:amd64 (3.100-3) ... 2021-05-17T21:35:01.7263916Z Setting up i965-va-driver:amd64 (2.4.0-0ubuntu1) ... 2021-05-17T21:35:01.7328452Z Setting up libvorbisenc2:amd64 (1.3.6-2ubuntu1) ... 2021-05-17T21:35:01.7375006Z Setting up libiec61883-0:amd64 (1.2.0-3) ... 2021-05-17T21:35:01.7508728Z Setting up libserd-0-0:amd64 (0.30.2-1) ... 2021-05-17T21:35:01.7569708Z Setting up libavc1394-0:amd64 (0.5.4-5) ... 2021-05-17T21:35:01.7631267Z Setting up mesa-vdpau-drivers:amd64 (20.2.6-0ubuntu0.20.04.1) ... 2021-05-17T21:35:01.7723813Z Setting up libzvbi0:amd64 (0.2.35-17) ... 2021-05-17T21:35:01.7770457Z Setting up libcdio-cdda2:amd64 (10.2+2.0.0-1) ... 2021-05-17T21:35:01.7824730Z Setting up libcdio-paranoia2:amd64 (10.2+2.0.0-1) ... 2021-05-17T21:35:01.7886211Z Setting up libopenal1:amd64 (1:1.19.1-1) ... 2021-05-17T21:35:01.7931744Z Setting up libavutil56:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.7976663Z Setting up va-driver-all:amd64 (2.7.0-2) ... 2021-05-17T21:35:01.8052241Z Setting up libpostproc55:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.8095361Z Setting up librubberband2:amd64 (1.8.2-1build1) ... 2021-05-17T21:35:01.8164870Z Setting up libjack-jackd2-0:amd64 (1.9.12~dfsg-2ubuntu2) ... 2021-05-17T21:35:01.8223713Z Setting up vdpau-driver-all:amd64 (1.3-1ubuntu2) ... 2021-05-17T21:35:01.8286536Z Setting up libsord-0-0:amd64 (0.16.4-1) ... 2021-05-17T21:35:01.8352978Z Setting up libsratom-0-0:amd64 (0.6.4-1) ... 2021-05-17T21:35:01.8403610Z Setting up libswscale5:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.8480205Z Setting up libsndfile1:amd64 (1.0.28-7) ... 2021-05-17T21:35:01.8538942Z Setting up liblilv-0-0:amd64 (0.24.6-1ubuntu0.1) ... 2021-05-17T21:35:01.8583965Z Setting up libpulse0:amd64 (1:13.99.1-1ubuntu3.10) ... 2021-05-17T21:35:01.8700332Z Setting up libswresample3:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.8756086Z Setting up libavresample4:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.8808073Z Setting up libavcodec58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.8863250Z Setting up libsdl2-2.0-0:amd64 (2.0.10+dfsg1-3) ... 2021-05-17T21:35:01.8958504Z Setting up libchromaprint1:amd64 (1.4.3-3build1) ... 2021-05-17T21:35:01.9033044Z Setting up libavformat58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.9087631Z Setting up libavfilter7:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.9133587Z Setting up libavdevice58:amd64 (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.9193134Z Setting up ffmpeg (7:4.2.4-1ubuntu0.1) ... 2021-05-17T21:35:01.9306974Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:02.9694981Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:05.1612960Z Reading package lists... 2021-05-17T21:35:05.3207807Z Building dependency tree... 2021-05-17T21:35:05.3229932Z Reading state information... 2021-05-17T21:35:05.4738340Z The following additional packages will be installed: 2021-05-17T21:35:05.4741410Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T21:35:05.5231580Z The following NEW packages will be installed: 2021-05-17T21:35:05.5233505Z libmagick++-6-headers libmagick++-6.q16-8 libmagick++-6.q16-dev 2021-05-17T21:35:05.5235739Z libmagick++-dev 2021-05-17T21:35:05.5419649Z 0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:05.5420512Z Need to get 309 kB of archives. 2021-05-17T21:35:05.5421506Z After this operation, 2202 kB of additional disk space will be used. 2021-05-17T21:35:05.5425201Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6-headers all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [47.5 kB] 2021-05-17T21:35:05.5456888Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-8 amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [133 kB] 2021-05-17T21:35:05.5498876Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-6.q16-dev amd64 8:6.9.10.23+dfsg-2.1ubuntu11.2 [127 kB] 2021-05-17T21:35:05.5532491Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libmagick++-dev all 8:6.9.10.23+dfsg-2.1ubuntu11.2 [1404 B] 2021-05-17T21:35:05.9992181Z Fetched 309 kB in 0s (12.4 MB/s) 2021-05-17T21:35:06.0406354Z Selecting previously unselected package libmagick++-6-headers. 2021-05-17T21:35:06.0489055Z (Reading database ... 2021-05-17T21:35:06.0489627Z (Reading database ... 5% 2021-05-17T21:35:06.0492548Z (Reading database ... 10% 2021-05-17T21:35:06.0493103Z (Reading database ... 15% 2021-05-17T21:35:06.0493588Z (Reading database ... 20% 2021-05-17T21:35:06.0494090Z (Reading database ... 25% 2021-05-17T21:35:06.0494576Z (Reading database ... 30% 2021-05-17T21:35:06.0495076Z (Reading database ... 35% 2021-05-17T21:35:06.0495573Z (Reading database ... 40% 2021-05-17T21:35:06.0496235Z (Reading database ... 45% 2021-05-17T21:35:06.0496748Z (Reading database ... 50% 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Preparing to unpack .../libmagick++-6.q16-8_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T21:35:06.2944077Z Unpacking libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.3435993Z Selecting previously unselected package libmagick++-6.q16-dev:amd64. 2021-05-17T21:35:06.3700447Z Preparing to unpack .../libmagick++-6.q16-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_amd64.deb ... 2021-05-17T21:35:06.3711200Z Unpacking libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.4304590Z Selecting previously unselected package libmagick++-dev. 2021-05-17T21:35:06.4602328Z Preparing to unpack .../libmagick++-dev_8%3a6.9.10.23+dfsg-2.1ubuntu11.2_all.deb ... 2021-05-17T21:35:06.4692760Z Unpacking libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.5352800Z Setting up libmagick++-6-headers (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.5472181Z Setting up libmagick++-6.q16-8:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.5515639Z Setting up libmagick++-6.q16-dev:amd64 (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.5556428Z Setting up libmagick++-dev (8:6.9.10.23+dfsg-2.1ubuntu11.2) ... 2021-05-17T21:35:06.5657625Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:08.8076276Z Reading package lists... 2021-05-17T21:35:08.9543076Z Building dependency tree... 2021-05-17T21:35:08.9565253Z Reading state information... 2021-05-17T21:35:09.1028249Z imagemagick is already the newest version (8:6.9.10.23+dfsg-2.1ubuntu11.2). 2021-05-17T21:35:09.1030433Z The following additional packages will be installed: 2021-05-17T21:35:09.1032421Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 libgs9 libgs9-common 2021-05-17T21:35:09.1033815Z libijs-0.35 libjbig2dec0 2021-05-17T21:35:09.1036814Z Suggested packages: 2021-05-17T21:35:09.1038206Z fonts-noto fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre 2021-05-17T21:35:09.1039636Z ghostscript-x 2021-05-17T21:35:09.1491444Z The following NEW packages will be installed: 2021-05-17T21:35:09.1493507Z fonts-droid-fallback fonts-noto-mono fonts-urw-base35 ghostscript libgs9 2021-05-17T21:35:09.1495210Z libgs9-common libijs-0.35 libjbig2dec0 2021-05-17T21:35:09.1680271Z 0 upgraded, 8 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:09.1680964Z Need to get 11.2 MB of archives. 2021-05-17T21:35:09.1681653Z After this operation, 39.1 MB of additional disk space will be used. 2021-05-17T21:35:09.1683308Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-droid-fallback all 1:6.0.1r16-1.1 [1805 kB] 2021-05-17T21:35:09.1967517Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 fonts-noto-mono all 20200323-1build1~ubuntu20.04.1 [80.6 kB] 2021-05-17T21:35:09.1984277Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 fonts-urw-base35 all 20170801.1-3 [6333 kB] 2021-05-17T21:35:09.2799804Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9-common all 9.50~dfsg-5ubuntu4.2 [681 kB] 2021-05-17T21:35:09.2908578Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libijs-0.35 amd64 0.35-15 [15.7 kB] 2021-05-17T21:35:09.2914088Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libjbig2dec0 amd64 0.18-1ubuntu1 [60.0 kB] 2021-05-17T21:35:09.2925439Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgs9 amd64 9.50~dfsg-5ubuntu4.2 [2172 kB] 2021-05-17T21:35:09.3209992Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 ghostscript amd64 9.50~dfsg-5ubuntu4.2 [51.6 kB] 2021-05-17T21:35:09.7568117Z Fetched 11.2 MB in 0s (66.8 MB/s) 2021-05-17T21:35:09.7941251Z Selecting previously unselected package fonts-droid-fallback. 2021-05-17T21:35:09.8012165Z (Reading database ... 2021-05-17T21:35:09.8012845Z (Reading database ... 5% 2021-05-17T21:35:09.8013661Z (Reading 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... 100% 2021-05-17T21:35:09.9171676Z (Reading database ... 267393 files and directories currently installed.) 2021-05-17T21:35:09.9319067Z Preparing to unpack .../0-fonts-droid-fallback_1%3a6.0.1r16-1.1_all.deb ... 2021-05-17T21:35:09.9565922Z Unpacking fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T21:35:10.1705038Z Selecting previously unselected package fonts-noto-mono. 2021-05-17T21:35:10.1929775Z Preparing to unpack .../1-fonts-noto-mono_20200323-1build1~ubuntu20.04.1_all.deb ... 2021-05-17T21:35:10.1943591Z Unpacking fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T21:35:10.2385437Z Selecting previously unselected package fonts-urw-base35. 2021-05-17T21:35:10.2632332Z Preparing to unpack .../2-fonts-urw-base35_20170801.1-3_all.deb ... 2021-05-17T21:35:10.3274299Z Unpacking fonts-urw-base35 (20170801.1-3) ... 2021-05-17T21:35:10.7305473Z Selecting previously unselected package libgs9-common. 2021-05-17T21:35:10.7616615Z Preparing to unpack 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2021-05-17T21:35:11.3259744Z Preparing to unpack .../7-ghostscript_9.50~dfsg-5ubuntu4.2_amd64.deb ... 2021-05-17T21:35:11.3277448Z Unpacking ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:35:11.3992033Z Setting up fonts-noto-mono (20200323-1build1~ubuntu20.04.1) ... 2021-05-17T21:35:11.4042135Z Setting up libijs-0.35:amd64 (0.35-15) ... 2021-05-17T21:35:11.4073212Z Setting up fonts-urw-base35 (20170801.1-3) ... 2021-05-17T21:35:11.4830236Z Setting up libjbig2dec0:amd64 (0.18-1ubuntu1) ... 2021-05-17T21:35:11.4880218Z Setting up fonts-droid-fallback (1:6.0.1r16-1.1) ... 2021-05-17T21:35:11.5155373Z Setting up libgs9-common (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:35:11.5208699Z Setting up libgs9:amd64 (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:35:11.5260849Z Setting up ghostscript (9.50~dfsg-5ubuntu4.2) ... 2021-05-17T21:35:11.5392557Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T21:35:11.6611368Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:11.6831400Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:14.9374226Z Reading package lists... 2021-05-17T21:35:15.1086563Z Building dependency tree... 2021-05-17T21:35:15.1107648Z Reading state information... 2021-05-17T21:35:15.2627516Z The following additional packages will be installed: 2021-05-17T21:35:15.2629237Z libudunits2-0 libudunits2-data 2021-05-17T21:35:15.3148679Z The following NEW packages will be installed: 2021-05-17T21:35:15.3150758Z libudunits2-0 libudunits2-data libudunits2-dev 2021-05-17T21:35:15.3344209Z 0 upgraded, 3 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:15.3345106Z Need to get 429 kB of archives. 2021-05-17T21:35:15.3346040Z After this operation, 1026 kB of additional disk space will be used. 2021-05-17T21:35:15.3348750Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-data all 2.2.26-5 [18.8 kB] 2021-05-17T21:35:15.3364383Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-0 amd64 2.2.26-5 [48.9 kB] 2021-05-17T21:35:15.3389618Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libudunits2-dev amd64 2.2.26-5 [362 kB] 2021-05-17T21:35:15.7927304Z Fetched 429 kB in 0s (13.9 MB/s) 2021-05-17T21:35:15.8236821Z Selecting previously unselected package libudunits2-data. 2021-05-17T21:35:15.8319310Z (Reading database ... 2021-05-17T21:35:15.8320538Z (Reading database ... 5% 2021-05-17T21:35:15.8321372Z (Reading database ... 10% 2021-05-17T21:35:15.8322106Z (Reading database ... 15% 2021-05-17T21:35:15.8322866Z (Reading database ... 20% 2021-05-17T21:35:15.8323637Z (Reading database ... 25% 2021-05-17T21:35:15.8324539Z (Reading database ... 30% 2021-05-17T21:35:15.8325433Z (Reading database ... 35% 2021-05-17T21:35:15.8326499Z (Reading database ... 40% 2021-05-17T21:35:15.8327445Z (Reading database ... 45% 2021-05-17T21:35:15.8328260Z (Reading database ... 50% 2021-05-17T21:35:15.8367324Z (Reading database ... 55% 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(2.2.26-5) ... 2021-05-17T21:35:16.0614160Z Selecting previously unselected package libudunits2-dev:amd64. 2021-05-17T21:35:16.0886138Z Preparing to unpack .../libudunits2-dev_2.2.26-5_amd64.deb ... 2021-05-17T21:35:16.0898127Z Unpacking libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T21:35:16.1659423Z Setting up libudunits2-data (2.2.26-5) ... 2021-05-17T21:35:16.1707827Z Setting up libudunits2-0:amd64 (2.2.26-5) ... 2021-05-17T21:35:16.1751943Z Setting up libudunits2-dev:amd64 (2.2.26-5) ... 2021-05-17T21:35:16.1803926Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T21:35:16.2986664Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:18.4504839Z Reading package lists... 2021-05-17T21:35:18.6402368Z Building dependency tree... 2021-05-17T21:35:18.6425622Z Reading state information... 2021-05-17T21:35:18.8667832Z The following NEW packages will be installed: 2021-05-17T21:35:18.8674422Z libjq-dev 2021-05-17T21:35:18.8881968Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:18.8882728Z Need to get 11.2 kB of archives. 2021-05-17T21:35:18.8883465Z After this operation, 47.1 kB of additional disk space will be used. 2021-05-17T21:35:18.8885674Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libjq-dev amd64 1.6-1ubuntu0.20.04.1 [11.2 kB] 2021-05-17T21:35:19.3253997Z Fetched 11.2 kB in 0s (683 kB/s) 2021-05-17T21:35:19.3591841Z Selecting previously unselected package libjq-dev:amd64. 2021-05-17T21:35:19.3670645Z (Reading database ... 2021-05-17T21:35:19.3671615Z (Reading database ... 5% 2021-05-17T21:35:19.3672481Z (Reading database ... 10% 2021-05-17T21:35:19.3673146Z (Reading database ... 15% 2021-05-17T21:35:19.3673794Z (Reading database ... 20% 2021-05-17T21:35:19.3674447Z (Reading database ... 25% 2021-05-17T21:35:19.3675100Z (Reading database ... 30% 2021-05-17T21:35:19.3675779Z (Reading database ... 35% 2021-05-17T21:35:19.3676441Z (Reading database ... 40% 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(1.6-1ubuntu0.20.04.1) ... 2021-05-17T21:35:21.7777769Z Reading package lists... 2021-05-17T21:35:21.9433184Z Building dependency tree... 2021-05-17T21:35:21.9453385Z Reading state information... 2021-05-17T21:35:22.1406531Z The following NEW packages will be installed: 2021-05-17T21:35:22.1408602Z libmng2 2021-05-17T21:35:22.1604753Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:22.1605535Z Need to get 168 kB of archives. 2021-05-17T21:35:22.1606284Z After this operation, 571 kB of additional disk space will be used. 2021-05-17T21:35:22.1608692Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmng2 amd64 2.0.3+dfsg-3 [168 kB] 2021-05-17T21:35:22.5827693Z Fetched 168 kB in 0s (8364 kB/s) 2021-05-17T21:35:22.6194325Z Selecting previously unselected package libmng2:amd64. 2021-05-17T21:35:22.6271142Z (Reading database ... 2021-05-17T21:35:22.6271956Z (Reading database ... 5% 2021-05-17T21:35:22.6272706Z (Reading database ... 10% 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2021-05-17T21:35:22.7424190Z (Reading database ... 267992 files and directories currently installed.) 2021-05-17T21:35:22.7571841Z Preparing to unpack .../libmng2_2.0.3+dfsg-3_amd64.deb ... 2021-05-17T21:35:22.7606863Z Unpacking libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T21:35:22.8334271Z Setting up libmng2:amd64 (2.0.3+dfsg-3) ... 2021-05-17T21:35:22.8387878Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:25.0076760Z Reading package lists... 2021-05-17T21:35:25.1915808Z Building dependency tree... 2021-05-17T21:35:25.1938300Z Reading state information... 2021-05-17T21:35:25.3972651Z E: Unable to locate package libmng1 2021-05-17T21:35:25.4699879Z Reading package lists... 2021-05-17T21:35:25.6483071Z Building dependency tree... 2021-05-17T21:35:25.6504383Z Reading state information... 2021-05-17T21:35:25.7709436Z E: Unable to locate package libapparmor-devel 2021-05-17T21:35:25.8405697Z Reading package lists... 2021-05-17T21:35:26.0078314Z Building dependency tree... 2021-05-17T21:35:26.0101898Z Reading state information... 2021-05-17T21:35:26.1785300Z The following additional packages will be installed: 2021-05-17T21:35:26.1787261Z libij-java 2021-05-17T21:35:26.2280867Z The following NEW packages will be installed: 2021-05-17T21:35:26.2292832Z imagej libij-java 2021-05-17T21:35:26.2494112Z 0 upgraded, 2 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:26.2495654Z Need to get 2328 kB of archives. 2021-05-17T21:35:26.2496887Z After this operation, 2498 kB of additional disk space will be used. 2021-05-17T21:35:26.2499630Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libij-java all 1.52r-1 [2284 kB] 2021-05-17T21:35:26.3114757Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 imagej all 1.52r-1 [43.7 kB] 2021-05-17T21:35:26.7582425Z Fetched 2328 kB in 0s (29.8 MB/s) 2021-05-17T21:35:26.7871246Z Selecting previously unselected package libij-java. 2021-05-17T21:35:26.7954427Z (Reading 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lists... 2021-05-17T21:35:31.4272827Z Building dependency tree... 2021-05-17T21:35:31.4297172Z Reading state information... 2021-05-17T21:35:31.5958635Z Suggested packages: 2021-05-17T21:35:31.5961044Z bowtie2-examples 2021-05-17T21:35:31.6420663Z The following NEW packages will be installed: 2021-05-17T21:35:31.6425023Z bowtie2 2021-05-17T21:35:31.6667510Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:31.6668260Z Need to get 1324 kB of archives. 2021-05-17T21:35:31.6669227Z After this operation, 5630 kB of additional disk space will be used. 2021-05-17T21:35:31.6671881Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 bowtie2 amd64 2.3.5.1-6build1 [1324 kB] 2021-05-17T21:35:32.1218005Z Fetched 1324 kB in 0s (31.4 MB/s) 2021-05-17T21:35:32.1516967Z Selecting previously unselected package bowtie2. 2021-05-17T21:35:32.1586216Z (Reading database ... 2021-05-17T21:35:32.1587196Z (Reading database ... 5% 2021-05-17T21:35:32.1588352Z 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database ... 100% 2021-05-17T21:35:32.2837740Z (Reading database ... 268021 files and directories currently installed.) 2021-05-17T21:35:32.2979724Z Preparing to unpack .../bowtie2_2.3.5.1-6build1_amd64.deb ... 2021-05-17T21:35:32.2993378Z Unpacking bowtie2 (2.3.5.1-6build1) ... 2021-05-17T21:35:32.4877012Z Setting up bowtie2 (2.3.5.1-6build1) ... 2021-05-17T21:35:32.4926885Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:35.6189263Z Reading package lists... 2021-05-17T21:35:35.7797333Z Building dependency tree... 2021-05-17T21:35:35.7824375Z Reading state information... 2021-05-17T21:35:35.9393264Z E: Unable to locate package install 2021-05-17T21:35:35.9394759Z E: Unable to locate package gdal 2021-05-17T21:35:36.0085711Z Reading package lists... 2021-05-17T21:35:36.1744980Z Building dependency tree... 2021-05-17T21:35:36.1767391Z Reading state information... 2021-05-17T21:35:36.2009145Z Package insighttoolkit4-python is not available, but is referred to by another package. 2021-05-17T21:35:36.2013368Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T21:35:36.2014268Z is only available from another source 2021-05-17T21:35:36.2014635Z 2021-05-17T21:35:36.3051635Z E: Package 'insighttoolkit4-python' has no installation candidate 2021-05-17T21:35:36.3723340Z Reading package lists... 2021-05-17T21:35:36.5387577Z Building dependency tree... 2021-05-17T21:35:36.5411326Z Reading state information... 2021-05-17T21:35:36.5675790Z Package libav-tools is not available, but is referred to by another package. 2021-05-17T21:35:36.5677255Z This may mean that the package is missing, has been obsoleted, or 2021-05-17T21:35:36.5678185Z is only available from another source 2021-05-17T21:35:36.5679118Z However the following packages replace it: 2021-05-17T21:35:36.5679797Z ffmpeg 2021-05-17T21:35:36.5680229Z 2021-05-17T21:35:36.6678874Z E: Package 'libav-tools' has no installation candidate 2021-05-17T21:35:36.7408711Z Reading package lists... 2021-05-17T21:35:36.9198595Z Building dependency tree... 2021-05-17T21:35:36.9223096Z Reading state information... 2021-05-17T21:35:37.0763386Z The following additional packages will be installed: 2021-05-17T21:35:37.0765729Z libgcrypt20-dev libgit2-28 libgpg-error-dev libhttp-parser-dev 2021-05-17T21:35:37.0767393Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T21:35:37.0768608Z libssh2-1-dev 2021-05-17T21:35:37.0774758Z Suggested packages: 2021-05-17T21:35:37.0776354Z libgcrypt20-doc libmbedtls-doc 2021-05-17T21:35:37.1310444Z The following NEW packages will be installed: 2021-05-17T21:35:37.1312585Z libgcrypt20-dev libgit2-28 libgit2-dev libgpg-error-dev libhttp-parser-dev 2021-05-17T21:35:37.1314421Z libhttp-parser2.9 libmbedcrypto3 libmbedtls-dev libmbedtls12 libmbedx509-0 2021-05-17T21:35:37.1315999Z libssh2-1-dev 2021-05-17T21:35:37.2263660Z 0 upgraded, 11 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:37.2264848Z Need to get 2667 kB of archives. 2021-05-17T21:35:37.2265614Z After this operation, 11.2 MB of additional disk space will be used. 2021-05-17T21:35:37.2267563Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgpg-error-dev amd64 1.37-1 [109 kB] 2021-05-17T21:35:37.2324664Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcrypt20-dev amd64 1.8.5-5ubuntu1 [470 kB] 2021-05-17T21:35:37.2401806Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser2.9 amd64 2.9.2-2 [21.8 kB] 2021-05-17T21:35:37.2411352Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedcrypto3 amd64 2.16.4-1ubuntu2 [150 kB] 2021-05-17T21:35:37.2436851Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedx509-0 amd64 2.16.4-1ubuntu2 [42.3 kB] 2021-05-17T21:35:37.2450458Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls12 amd64 2.16.4-1ubuntu2 [71.8 kB] 2021-05-17T21:35:37.2467030Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-28 amd64 0.28.4+dfsg.1-2 [403 kB] 2021-05-17T21:35:37.2534839Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libmbedtls-dev amd64 2.16.4-1ubuntu2 [444 kB] 2021-05-17T21:35:37.2610094Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libssh2-1-dev amd64 1.8.0-2.1build1 [244 kB] 2021-05-17T21:35:37.2634071Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhttp-parser-dev amd64 2.9.2-2 [20.2 kB] 2021-05-17T21:35:37.2649942Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgit2-dev amd64 0.28.4+dfsg.1-2 [691 kB] 2021-05-17T21:35:37.7046195Z Fetched 2667 kB in 0s (18.9 MB/s) 2021-05-17T21:35:37.7372577Z Selecting previously unselected package libgpg-error-dev. 2021-05-17T21:35:37.7451218Z (Reading database ... 2021-05-17T21:35:37.7452150Z (Reading database ... 5% 2021-05-17T21:35:37.7453112Z (Reading database 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2021-05-17T21:35:37.8690527Z (Reading database ... 268047 files and directories currently installed.) 2021-05-17T21:35:37.8842028Z Preparing to unpack .../00-libgpg-error-dev_1.37-1_amd64.deb ... 2021-05-17T21:35:37.8859516Z Unpacking libgpg-error-dev (1.37-1) ... 2021-05-17T21:35:37.9424660Z Selecting previously unselected package libgcrypt20-dev. 2021-05-17T21:35:37.9659556Z Preparing to unpack .../01-libgcrypt20-dev_1.8.5-5ubuntu1_amd64.deb ... 2021-05-17T21:35:37.9672580Z Unpacking libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T21:35:38.0464797Z Selecting previously unselected package libhttp-parser2.9:amd64. 2021-05-17T21:35:38.0711956Z Preparing to unpack .../02-libhttp-parser2.9_2.9.2-2_amd64.deb ... 2021-05-17T21:35:38.0744639Z Unpacking libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T21:35:38.1144763Z Selecting previously unselected package libmbedcrypto3:amd64. 2021-05-17T21:35:38.1348806Z Preparing to unpack .../03-libmbedcrypto3_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:35:38.1366734Z Unpacking libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.1784655Z Selecting previously unselected package libmbedx509-0:amd64. 2021-05-17T21:35:38.2072316Z Preparing to unpack .../04-libmbedx509-0_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:35:38.2089386Z Unpacking libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.2464213Z Selecting previously unselected package libmbedtls12:amd64. 2021-05-17T21:35:38.2715605Z Preparing to unpack .../05-libmbedtls12_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:35:38.2730812Z Unpacking libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.3145404Z Selecting previously unselected package libgit2-28:amd64. 2021-05-17T21:35:38.3411902Z Preparing to unpack .../06-libgit2-28_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T21:35:38.3425479Z Unpacking libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:35:38.4144216Z Selecting previously unselected package libmbedtls-dev:amd64. 2021-05-17T21:35:38.4387572Z Preparing to unpack .../07-libmbedtls-dev_2.16.4-1ubuntu2_amd64.deb ... 2021-05-17T21:35:38.4418661Z Unpacking libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.5185954Z Selecting previously unselected package libssh2-1-dev:amd64. 2021-05-17T21:35:38.5477432Z Preparing to unpack .../08-libssh2-1-dev_1.8.0-2.1build1_amd64.deb ... 2021-05-17T21:35:38.5493129Z Unpacking libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T21:35:38.6184627Z Selecting previously unselected package libhttp-parser-dev. 2021-05-17T21:35:38.6436379Z Preparing to unpack .../09-libhttp-parser-dev_2.9.2-2_amd64.deb ... 2021-05-17T21:35:38.6458939Z Unpacking libhttp-parser-dev (2.9.2-2) ... 2021-05-17T21:35:38.6824370Z Selecting previously unselected package libgit2-dev:amd64. 2021-05-17T21:35:38.7090747Z Preparing to unpack .../10-libgit2-dev_0.28.4+dfsg.1-2_amd64.deb ... 2021-05-17T21:35:38.7105339Z Unpacking libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:35:38.8398909Z Setting up libgpg-error-dev (1.37-1) ... 2021-05-17T21:35:38.8449080Z Setting up libmbedcrypto3:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.8501933Z Setting up libhttp-parser2.9:amd64 (2.9.2-2) ... 2021-05-17T21:35:38.8548495Z Setting up libhttp-parser-dev (2.9.2-2) ... 2021-05-17T21:35:38.8591015Z Setting up libmbedx509-0:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.8652194Z Setting up libmbedtls12:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.8704330Z Setting up libmbedtls-dev:amd64 (2.16.4-1ubuntu2) ... 2021-05-17T21:35:38.8761320Z Setting up libgcrypt20-dev (1.8.5-5ubuntu1) ... 2021-05-17T21:35:38.8818666Z Setting up libssh2-1-dev:amd64 (1.8.0-2.1build1) ... 2021-05-17T21:35:38.8863168Z Setting up libgit2-28:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:35:38.8906847Z Setting up libgit2-dev:amd64 (0.28.4+dfsg.1-2) ... 2021-05-17T21:35:38.8986386Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:43.8170375Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T21:35:43.9378648Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:46.2175075Z Reading package lists... 2021-05-17T21:35:46.3629674Z Building dependency tree... 2021-05-17T21:35:46.3648641Z Reading state information... 2021-05-17T21:35:46.6181508Z libtiff-dev is already the newest version (4.1.0+git191117-2ubuntu0.20.04.1). 2021-05-17T21:35:46.6183767Z libtiff-dev set to manually installed. 2021-05-17T21:35:46.6185334Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:46.6850309Z Reading package lists... 2021-05-17T21:35:46.8494363Z Building dependency tree... 2021-05-17T21:35:46.8513213Z Reading state information... 2021-05-17T21:35:47.0812466Z unixodbc-dev is already the newest version (2.3.7). 2021-05-17T21:35:47.0813863Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:47.1529507Z Reading package lists... 2021-05-17T21:35:47.3156942Z Building dependency tree... 2021-05-17T21:35:47.3179596Z Reading state information... 2021-05-17T21:35:47.5127364Z The following NEW packages will be installed: 2021-05-17T21:35:47.5131507Z libsodium-dev 2021-05-17T21:35:47.5336094Z 0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:47.5337190Z Need to get 169 kB of archives. 2021-05-17T21:35:47.9851907Z After this operation, 826 kB of additional disk space will be used. 2021-05-17T21:35:47.9853976Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libsodium-dev amd64 1.0.18-1 [169 kB] 2021-05-17T21:35:47.9854873Z Fetched 169 kB in 0s (7634 kB/s) 2021-05-17T21:35:48.0174216Z Selecting previously unselected package libsodium-dev:amd64. 2021-05-17T21:35:48.0248622Z (Reading database ... 2021-05-17T21:35:48.0249497Z (Reading database ... 5% 2021-05-17T21:35:48.0250190Z (Reading database ... 10% 2021-05-17T21:35:48.0250868Z (Reading database ... 15% 2021-05-17T21:35:48.0251523Z (Reading database ... 20% 2021-05-17T21:35:48.0252199Z (Reading database ... 25% 2021-05-17T21:35:48.0252860Z (Reading database ... 30% 2021-05-17T21:35:48.0253512Z (Reading database ... 35% 2021-05-17T21:35:48.0254195Z (Reading database ... 40% 2021-05-17T21:35:48.0254914Z (Reading database ... 45% 2021-05-17T21:35:48.0255584Z (Reading database ... 50% 2021-05-17T21:35:48.0292639Z (Reading database ... 55% 2021-05-17T21:35:48.0336022Z (Reading database ... 60% 2021-05-17T21:35:48.0358884Z (Reading database ... 65% 2021-05-17T21:35:48.0510452Z (Reading database ... 70% 2021-05-17T21:35:48.0647816Z (Reading database ... 75% 2021-05-17T21:35:48.0951568Z (Reading database ... 80% 2021-05-17T21:35:48.1256138Z (Reading database ... 85% 2021-05-17T21:35:48.1441990Z (Reading database ... 90% 2021-05-17T21:35:48.1530347Z (Reading database ... 95% 2021-05-17T21:35:48.1530881Z (Reading database ... 100% 2021-05-17T21:35:48.1531640Z (Reading database ... 268550 files and directories currently installed.) 2021-05-17T21:35:48.1687055Z Preparing to unpack .../libsodium-dev_1.0.18-1_amd64.deb ... 2021-05-17T21:35:48.1701315Z Unpacking libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T21:35:48.2564575Z Setting up libsodium-dev:amd64 (1.0.18-1) ... 2021-05-17T21:35:50.5540385Z Reading package lists... 2021-05-17T21:35:50.7256605Z Building dependency tree... 2021-05-17T21:35:50.7282848Z Reading state information... 2021-05-17T21:35:50.8828350Z The following additional packages will be installed: 2021-05-17T21:35:50.8832041Z libarchive-dev liblept5 libtesseract4 tesseract-ocr tesseract-ocr-osd 2021-05-17T21:35:50.9351457Z The following NEW packages will be installed: 2021-05-17T21:35:50.9355822Z libarchive-dev liblept5 libleptonica-dev libtesseract-dev libtesseract4 2021-05-17T21:35:50.9357627Z tesseract-ocr tesseract-ocr-eng tesseract-ocr-osd 2021-05-17T21:35:50.9557225Z 0 upgraded, 8 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:50.9558043Z Need to get 10.4 MB of archives. 2021-05-17T21:35:50.9558808Z After this operation, 38.0 MB of additional disk space will be used. 2021-05-17T21:35:50.9560644Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libarchive-dev amd64 3.4.0-2ubuntu1 [490 kB] 2021-05-17T21:35:50.9654232Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblept5 amd64 1.79.0-1 [999 kB] 2021-05-17T21:35:50.9881578Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libleptonica-dev amd64 1.79.0-1 [1389 kB] 2021-05-17T21:35:51.0137774Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract4 amd64 4.1.1-2build2 [1237 kB] 2021-05-17T21:35:51.0404743Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libtesseract-dev amd64 4.1.1-2build2 [1463 kB] 2021-05-17T21:35:51.0746943Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-eng all 1:4.00~git30-7274cfa-1 [1598 kB] 2021-05-17T21:35:51.1099390Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr-osd all 1:4.00~git30-7274cfa-1 [2990 kB] 2021-05-17T21:35:51.1748921Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 tesseract-ocr amd64 4.1.1-2build2 [262 kB] 2021-05-17T21:35:51.6435075Z Fetched 10.4 MB in 0s (43.8 MB/s) 2021-05-17T21:35:51.6775319Z Selecting previously unselected package libarchive-dev:amd64. 2021-05-17T21:35:51.6859734Z (Reading database ... 2021-05-17T21:35:51.6860926Z (Reading database ... 5% 2021-05-17T21:35:51.6861808Z (Reading database ... 10% 2021-05-17T21:35:51.6862577Z (Reading database ... 15% 2021-05-17T21:35:51.6863121Z (Reading database ... 20% 2021-05-17T21:35:51.6863802Z (Reading database ... 25% 2021-05-17T21:35:51.6864444Z (Reading database ... 30% 2021-05-17T21:35:51.6864904Z (Reading database ... 35% 2021-05-17T21:35:51.6865556Z (Reading database ... 40% 2021-05-17T21:35:51.6866027Z (Reading database ... 45% 2021-05-17T21:35:51.6866696Z (Reading database 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.../1-liblept5_1.79.0-1_amd64.deb ... 2021-05-17T21:35:51.9492506Z Unpacking liblept5:amd64 (1.79.0-1) ... 2021-05-17T21:35:52.0824676Z Selecting previously unselected package libleptonica-dev:amd64. 2021-05-17T21:35:52.1044958Z Preparing to unpack .../2-libleptonica-dev_1.79.0-1_amd64.deb ... 2021-05-17T21:35:52.1093602Z Unpacking libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T21:35:52.2783802Z Selecting previously unselected package libtesseract4:amd64. 2021-05-17T21:35:52.3009075Z Preparing to unpack .../3-libtesseract4_4.1.1-2build2_amd64.deb ... 2021-05-17T21:35:52.3023474Z Unpacking libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:52.4585473Z Selecting previously unselected package libtesseract-dev:amd64. 2021-05-17T21:35:52.4865378Z Preparing to unpack .../4-libtesseract-dev_4.1.1-2build2_amd64.deb ... 2021-05-17T21:35:52.4883745Z Unpacking libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:52.6744851Z Selecting previously unselected package tesseract-ocr-eng. 2021-05-17T21:35:52.6983856Z Preparing to unpack .../5-tesseract-ocr-eng_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T21:35:52.7001284Z Unpacking tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:52.8784920Z Selecting previously unselected package tesseract-ocr-osd. 2021-05-17T21:35:52.9056120Z Preparing to unpack .../6-tesseract-ocr-osd_1%3a4.00~git30-7274cfa-1_all.deb ... 2021-05-17T21:35:52.9068622Z Unpacking tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:53.2842588Z Selecting previously unselected package tesseract-ocr. 2021-05-17T21:35:53.3145947Z Preparing to unpack .../7-tesseract-ocr_4.1.1-2build2_amd64.deb ... 2021-05-17T21:35:53.3158239Z Unpacking tesseract-ocr (4.1.1-2build2) ... 2021-05-17T21:35:53.4198275Z Setting up tesseract-ocr-eng (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:53.4260775Z Setting up liblept5:amd64 (1.79.0-1) ... 2021-05-17T21:35:53.4319697Z Setting up libleptonica-dev:amd64 (1.79.0-1) ... 2021-05-17T21:35:53.4353726Z Setting up libtesseract4:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:53.4392489Z Setting up libarchive-dev:amd64 (3.4.0-2ubuntu1) ... 2021-05-17T21:35:53.4433208Z Setting up tesseract-ocr-osd (1:4.00~git30-7274cfa-1) ... 2021-05-17T21:35:53.4468654Z Setting up libtesseract-dev:amd64 (4.1.1-2build2) ... 2021-05-17T21:35:53.4513085Z Setting up tesseract-ocr (4.1.1-2build2) ... 2021-05-17T21:35:53.4589280Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:35:56.5924862Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:35:58.9349105Z Reading package lists... 2021-05-17T21:35:59.1191748Z Building dependency tree... 2021-05-17T21:35:59.1216455Z Reading state information... 2021-05-17T21:35:59.3632733Z wget is already the newest version (1.20.3-1ubuntu1). 2021-05-17T21:35:59.3634150Z 0 upgraded, 0 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:59.4352515Z Reading package lists... 2021-05-17T21:35:59.5974669Z Building dependency tree... 2021-05-17T21:35:59.5997416Z Reading state information... 2021-05-17T21:35:59.7601208Z The following additional packages will be installed: 2021-05-17T21:35:59.7603606Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T21:35:59.7605683Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev 2021-05-17T21:35:59.7610925Z Suggested packages: 2021-05-17T21:35:59.7612181Z doc-base krb5-doc krb5-user libnorm-doc 2021-05-17T21:35:59.8124187Z The following NEW packages will be installed: 2021-05-17T21:35:59.8126881Z comerr-dev krb5-multidev libgssrpc4 libkadm5clnt-mit11 libkadm5srv-mit11 2021-05-17T21:35:59.8129419Z libkdb5-9 libkrb5-dev libnorm-dev libpgm-dev libzmq3-dev 2021-05-17T21:35:59.8335599Z 0 upgraded, 10 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:35:59.8336991Z Need to get 1459 kB of archives. 2021-05-17T21:35:59.8338069Z After this operation, 7754 kB of additional disk space will be used. 2021-05-17T21:35:59.8340193Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libgssrpc4 amd64 1.17-6ubuntu4.1 [55.4 kB] 2021-05-17T21:35:59.8367145Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkdb5-9 amd64 1.17-6ubuntu4.1 [37.3 kB] 2021-05-17T21:35:59.8386570Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5srv-mit11 amd64 1.17-6ubuntu4.1 [49.5 kB] 2021-05-17T21:35:59.8406842Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkadm5clnt-mit11 amd64 1.17-6ubuntu4.1 [37.6 kB] 2021-05-17T21:35:59.8419064Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 comerr-dev amd64 2.1-1.45.5-2ubuntu1 [39.9 kB] 2021-05-17T21:35:59.8437413Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 krb5-multidev amd64 1.17-6ubuntu4.1 [120 kB] 2021-05-17T21:35:59.8486030Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnorm-dev amd64 1.5.8+dfsg2-2build1 [463 kB] 2021-05-17T21:35:59.8614855Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpgm-dev amd64 5.2.122~dfsg-3ubuntu1 [189 kB] 2021-05-17T21:35:59.8654453Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libkrb5-dev amd64 1.17-6ubuntu4.1 [11.7 kB] 2021-05-17T21:35:59.8661812Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzmq3-dev amd64 4.3.2-2ubuntu1 [455 kB] 2021-05-17T21:36:00.3673091Z Fetched 1459 kB in 0s (22.2 MB/s) 2021-05-17T21:36:00.4023620Z Selecting previously unselected package libgssrpc4:amd64. 2021-05-17T21:36:00.4106772Z (Reading database ... 2021-05-17T21:36:00.4107501Z (Reading database ... 5% 2021-05-17T21:36:00.4109051Z (Reading database ... 10% 2021-05-17T21:36:00.4109922Z (Reading database ... 15% 2021-05-17T21:36:00.4110778Z (Reading database ... 20% 2021-05-17T21:36:00.4111466Z (Reading database ... 25% 2021-05-17T21:36:00.4112797Z (Reading database ... 30% 2021-05-17T21:36:00.4113438Z (Reading database ... 35% 2021-05-17T21:36:00.4116618Z (Reading database ... 40% 2021-05-17T21:36:00.4117345Z (Reading database ... 45% 2021-05-17T21:36:00.4118157Z (Reading database ... 50% 2021-05-17T21:36:00.4148981Z (Reading database ... 55% 2021-05-17T21:36:00.4204784Z (Reading database ... 60% 2021-05-17T21:36:00.4241930Z (Reading database ... 65% 2021-05-17T21:36:00.4382443Z (Reading database ... 70% 2021-05-17T21:36:00.4524673Z (Reading database ... 75% 2021-05-17T21:36:00.4814221Z (Reading database ... 80% 2021-05-17T21:36:00.4973684Z (Reading database ... 85% 2021-05-17T21:36:00.5287359Z (Reading database ... 90% 2021-05-17T21:36:00.5375228Z (Reading database ... 95% 2021-05-17T21:36:00.5376003Z (Reading database ... 100% 2021-05-17T21:36:00.5377104Z (Reading database ... 268845 files and directories currently installed.) 2021-05-17T21:36:00.5537082Z Preparing to unpack .../0-libgssrpc4_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:36:00.5562396Z Unpacking libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:00.5904410Z Selecting previously unselected package libkdb5-9:amd64. 2021-05-17T21:36:00.6183305Z Preparing to unpack .../1-libkdb5-9_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:36:00.6198521Z Unpacking libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:00.6585178Z Selecting previously unselected package libkadm5srv-mit11:amd64. 2021-05-17T21:36:00.6842964Z Preparing to unpack .../2-libkadm5srv-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:36:00.6856263Z Unpacking libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:00.7189234Z Selecting previously unselected package libkadm5clnt-mit11:amd64. 2021-05-17T21:36:00.7500283Z Preparing to unpack .../3-libkadm5clnt-mit11_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:36:00.7514615Z Unpacking libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:00.7984576Z Selecting previously unselected package comerr-dev:amd64. 2021-05-17T21:36:00.8259617Z Preparing to unpack .../4-comerr-dev_2.1-1.45.5-2ubuntu1_amd64.deb ... 2021-05-17T21:36:00.8292900Z Unpacking comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T21:36:00.8744666Z Selecting previously unselected package krb5-multidev:amd64. 2021-05-17T21:36:00.9010625Z Preparing to unpack .../5-krb5-multidev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:36:00.9024613Z Unpacking krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:00.9504831Z Selecting previously unselected package libnorm-dev:amd64. 2021-05-17T21:36:00.9784914Z Preparing to unpack .../6-libnorm-dev_1.5.8+dfsg2-2build1_amd64.deb ... 2021-05-17T21:36:00.9796424Z Unpacking libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T21:36:01.0624433Z Selecting previously unselected package libpgm-dev:amd64. 2021-05-17T21:36:01.0919004Z Preparing to unpack .../7-libpgm-dev_5.2.122~dfsg-3ubuntu1_amd64.deb ... 2021-05-17T21:36:01.0931330Z Unpacking libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T21:36:01.1424993Z Selecting previously unselected package libkrb5-dev:amd64. 2021-05-17T21:36:01.1696132Z Preparing to unpack .../8-libkrb5-dev_1.17-6ubuntu4.1_amd64.deb ... 2021-05-17T21:36:01.1708646Z Unpacking libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.2064435Z Selecting previously unselected package libzmq3-dev:amd64. 2021-05-17T21:36:01.2327696Z Preparing to unpack .../9-libzmq3-dev_4.3.2-2ubuntu1_amd64.deb ... 2021-05-17T21:36:01.2343101Z Unpacking libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T21:36:01.3607174Z Setting up libnorm-dev:amd64 (1.5.8+dfsg2-2build1) ... 2021-05-17T21:36:01.3644504Z Setting up libgssrpc4:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.3691971Z Setting up libpgm-dev:amd64 (5.2.122~dfsg-3ubuntu1) ... 2021-05-17T21:36:01.3732089Z Setting up comerr-dev:amd64 (2.1-1.45.5-2ubuntu1) ... 2021-05-17T21:36:01.3789192Z Setting up libkdb5-9:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.3822603Z Setting up libkadm5srv-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.3860989Z Setting up libkadm5clnt-mit11:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.3899869Z Setting up krb5-multidev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.3939882Z Setting up libkrb5-dev:amd64 (1.17-6ubuntu4.1) ... 2021-05-17T21:36:01.3973986Z Setting up libzmq3-dev:amd64 (4.3.2-2ubuntu1) ... 2021-05-17T21:36:01.4027193Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:36:01.4259112Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:36:04.6937441Z Processing triggers for install-info (6.7.0.dfsg.2-5) ... 2021-05-17T21:36:07.0351074Z Reading package lists... 2021-05-17T21:36:07.2024120Z Building dependency tree... 2021-05-17T21:36:07.2047489Z Reading state information... 2021-05-17T21:36:07.3370779Z E: Unable to locate package udunits 2021-05-17T21:36:07.3988565Z Reading package lists... 2021-05-17T21:36:07.5842762Z Building dependency tree... 2021-05-17T21:36:07.5867960Z Reading state information... 2021-05-17T21:36:07.7427203Z The following additional packages will be installed: 2021-05-17T21:36:07.7429216Z libwebpdemux2 2021-05-17T21:36:07.7932424Z The following NEW packages will be installed: 2021-05-17T21:36:07.7935327Z libwebp-dev libwebpdemux2 2021-05-17T21:36:07.8135342Z 0 upgraded, 2 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:36:07.8136421Z Need to get 277 kB of archives. 2021-05-17T21:36:07.8137619Z After this operation, 965 kB of additional disk space will be used. 2021-05-17T21:36:07.8140587Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebpdemux2 amd64 0.6.1-2 [9472 B] 2021-05-17T21:36:07.8146802Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwebp-dev amd64 0.6.1-2 [267 kB] 2021-05-17T21:36:08.2630748Z Fetched 277 kB in 0s (11.9 MB/s) 2021-05-17T21:36:08.3035633Z Selecting previously unselected package libwebpdemux2:amd64. 2021-05-17T21:36:08.3119876Z (Reading database ... 2021-05-17T21:36:08.3120701Z (Reading database ... 5% 2021-05-17T21:36:08.3122642Z (Reading database ... 10% 2021-05-17T21:36:08.3124132Z (Reading database ... 15% 2021-05-17T21:36:08.3125240Z (Reading database ... 20% 2021-05-17T21:36:08.3126106Z (Reading database ... 25% 2021-05-17T21:36:08.3127149Z (Reading database ... 30% 2021-05-17T21:36:08.3127668Z (Reading database ... 35% 2021-05-17T21:36:08.3128163Z (Reading database ... 40% 2021-05-17T21:36:08.3128693Z (Reading database ... 45% 2021-05-17T21:36:08.3129177Z (Reading database ... 50% 2021-05-17T21:36:08.3162290Z (Reading database ... 55% 2021-05-17T21:36:08.3213718Z (Reading database ... 60% 2021-05-17T21:36:08.3254576Z (Reading database ... 65% 2021-05-17T21:36:08.3406162Z (Reading database ... 70% 2021-05-17T21:36:08.3563509Z (Reading database ... 75% 2021-05-17T21:36:08.3864612Z (Reading database ... 80% 2021-05-17T21:36:08.4065686Z (Reading database ... 85% 2021-05-17T21:36:08.4435229Z (Reading database ... 90% 2021-05-17T21:36:08.4536765Z (Reading database ... 95% 2021-05-17T21:36:08.4537603Z (Reading database ... 100% 2021-05-17T21:36:08.4538470Z (Reading database ... 269145 files and directories currently installed.) 2021-05-17T21:36:08.4720819Z Preparing to unpack .../libwebpdemux2_0.6.1-2_amd64.deb ... 2021-05-17T21:36:08.4745015Z Unpacking libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T21:36:08.5024495Z Selecting previously unselected package libwebp-dev:amd64. 2021-05-17T21:36:08.5361446Z Preparing to unpack .../libwebp-dev_0.6.1-2_amd64.deb ... 2021-05-17T21:36:08.5379272Z Unpacking libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T21:36:08.6310512Z Setting up libwebpdemux2:amd64 (0.6.1-2) ... 2021-05-17T21:36:08.6364617Z Setting up libwebp-dev:amd64 (0.6.1-2) ... 2021-05-17T21:36:08.6416488Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:36:11.1033396Z Reading package lists... 2021-05-17T21:36:11.2979661Z Building dependency tree... 2021-05-17T21:36:11.3003218Z Reading state information... 2021-05-17T21:36:11.4741900Z The following additional packages will be installed: 2021-05-17T21:36:11.4745683Z gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T21:36:11.4747641Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T21:36:11.4748945Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T21:36:11.4752237Z Suggested packages: 2021-05-17T21:36:11.4753336Z cargo-doc gdb-doc gdbserver rust-doc rust-src 2021-05-17T21:36:11.4754024Z Recommended packages: 2021-05-17T21:36:11.4754489Z cargo 2021-05-17T21:36:11.5397397Z The following NEW packages will be installed: 2021-05-17T21:36:11.5402705Z cargo gdb libbabeltrace1 libboost-regex1.71.0 libc6-dbg libipt2 2021-05-17T21:36:11.5404397Z libsource-highlight-common libsource-highlight4v5 libstd-rust-1.47 2021-05-17T21:36:11.5406463Z libstd-rust-dev libxxhash0 rust-gdb rustc 2021-05-17T21:36:11.5655443Z 0 upgraded, 13 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:36:11.5656587Z Need to get 108 MB of archives. 2021-05-17T21:36:11.5658425Z After this operation, 501 MB of additional disk space will be used. 2021-05-17T21:36:11.5660802Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libbabeltrace1 amd64 1.5.8-1build1 [156 kB] 2021-05-17T21:36:11.5698781Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libipt2 amd64 2.0.1-1 [42.8 kB] 2021-05-17T21:36:11.5721043Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight-common all 3.1.8-1.2build5 [50.7 kB] 2021-05-17T21:36:11.5745483Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libboost-regex1.71.0 amd64 1.71.0-6ubuntu6 [471 kB] 2021-05-17T21:36:11.5891745Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsource-highlight4v5 amd64 3.1.8-1.2build5 [232 kB] 2021-05-17T21:36:11.5938964Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxxhash0 amd64 0.7.3-1 [15.3 kB] 2021-05-17T21:36:11.5950888Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-1.47 amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [59.6 MB] 2021-05-17T21:36:11.8374238Z Get:8 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal/main amd64 gdb amd64 10.2-0ubuntu1~20.04~1 [3282 kB] 2021-05-17T21:36:12.6493479Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 libstd-rust-dev amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [28.5 MB] 2021-05-17T21:36:13.0534843Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rustc amd64 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [1921 kB] 2021-05-17T21:36:13.0777577Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 cargo amd64 0.47.0-1~exp1ubuntu1~20.04.1 [3147 kB] 2021-05-17T21:36:13.1159066Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libc6-dbg amd64 2.31-0ubuntu9.2 [10.5 MB] 2021-05-17T21:36:13.2602697Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal-updates/universe amd64 rust-gdb all 1.47.0+dfsg1+llvm-1ubuntu1~20.04.1 [27.5 kB] 2021-05-17T21:36:13.7769575Z Fetched 108 MB in 2s (62.9 MB/s) 2021-05-17T21:36:13.8231820Z Selecting previously unselected package libbabeltrace1:amd64. 2021-05-17T21:36:13.8329061Z (Reading database ... 2021-05-17T21:36:13.8329719Z (Reading database ... 5% 2021-05-17T21:36:13.8330293Z (Reading database ... 10% 2021-05-17T21:36:13.8331258Z (Reading database ... 15% 2021-05-17T21:36:13.8332116Z (Reading database ... 20% 2021-05-17T21:36:13.8332867Z (Reading database ... 25% 2021-05-17T21:36:13.8333889Z (Reading database ... 30% 2021-05-17T21:36:13.8334583Z (Reading database ... 35% 2021-05-17T21:36:13.8335328Z (Reading database ... 40% 2021-05-17T21:36:13.8335987Z (Reading database ... 45% 2021-05-17T21:36:13.8336675Z (Reading database ... 50% 2021-05-17T21:36:13.8377313Z (Reading database ... 55% 2021-05-17T21:36:13.8431445Z (Reading database ... 60% 2021-05-17T21:36:13.8467878Z (Reading database ... 65% 2021-05-17T21:36:13.8628913Z (Reading database ... 70% 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libstd-rust-1.47:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:36:26.8637274Z Setting up libsource-highlight-common (3.1.8-1.2build5) ... 2021-05-17T21:36:26.8675008Z Setting up libc6-dbg:amd64 (2.31-0ubuntu9.2) ... 2021-05-17T21:36:26.8712922Z Setting up libstd-rust-dev:amd64 (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:36:26.8754942Z Setting up libipt2 (2.0.1-1) ... 2021-05-17T21:36:26.8801059Z Setting up libboost-regex1.71.0:amd64 (1.71.0-6ubuntu6) ... 2021-05-17T21:36:26.8859457Z Setting up libbabeltrace1:amd64 (1.5.8-1build1) ... 2021-05-17T21:36:26.8898328Z Setting up rustc (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:36:26.8998072Z Setting up libxxhash0:amd64 (0.7.3-1) ... 2021-05-17T21:36:26.9039886Z Setting up libsource-highlight4v5 (3.1.8-1.2build5) ... 2021-05-17T21:36:26.9071467Z Setting up cargo (0.47.0-1~exp1ubuntu1~20.04.1) ... 2021-05-17T21:36:26.9104340Z Setting up gdb (10.2-0ubuntu1~20.04~1) ... 2021-05-17T21:36:26.9158403Z Setting up rust-gdb (1.47.0+dfsg1+llvm-1ubuntu1~20.04.1) ... 2021-05-17T21:36:26.9211404Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:36:26.9476713Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:36:30.7187663Z Reading package lists... 2021-05-17T21:36:30.8994631Z Building dependency tree... 2021-05-17T21:36:30.9017574Z Reading state information... 2021-05-17T21:36:31.0837909Z The following additional packages will be installed: 2021-05-17T21:36:31.0840152Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T21:36:31.0842301Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T21:36:31.0844101Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T21:36:31.0845958Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T21:36:31.0847797Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T21:36:31.0849785Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T21:36:31.0851400Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T21:36:31.0853194Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T21:36:31.0856195Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T21:36:31.0861023Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T21:36:31.0868684Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T21:36:31.0870192Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T21:36:31.0871713Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T21:36:31.0873398Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T21:36:31.0875005Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T21:36:31.0876551Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T21:36:31.0878013Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T21:36:31.0879478Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T21:36:31.0881035Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T21:36:31.0882310Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T21:36:31.0883525Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T21:36:31.0885138Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T21:36:31.0886362Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T21:36:31.0887510Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T21:36:31.0888697Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T21:36:31.0890157Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T21:36:31.0891679Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T21:36:31.0893418Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T21:36:31.0894834Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T21:36:31.0896164Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T21:36:31.0897782Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T21:36:31.0899013Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T21:36:31.0900661Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T21:36:31.0902038Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T21:36:31.0903917Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T21:36:31.0905450Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T21:36:31.0906893Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T21:36:31.0908277Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T21:36:31.0909627Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T21:36:31.0911069Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T21:36:31.0912579Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T21:36:31.0913935Z python3-webencodings qdoc-qt5 qgis-common qgis-plugin-grass 2021-05-17T21:36:31.0915284Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T21:36:31.0917211Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T21:36:31.0918858Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T21:36:31.0920273Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T21:36:31.0921739Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T21:36:31.0923268Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T21:36:31.0924550Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T21:36:31.0925364Z Suggested packages: 2021-05-17T21:36:31.0926439Z avahi-autoipd blt-demo libgdal-grass grass-dev grass-gui e00compr avce00 2021-05-17T21:36:31.0927777Z gnuplot gpsbabel gpstrans netpbm python3-rpy2 python3-termcolor grass 2021-05-17T21:36:31.0929376Z grass-dev-doc gvfs exiv2 geotiff-bin libgeotiff-epsg libvisual-0.4-plugins 2021-05-17T21:36:31.0930901Z libhdf4-doc libhdf4-alt-dev hdf4-tools libjs-jquery-ui-docs avahi-autoipd 2021-05-17T21:36:31.0932193Z | zeroconf ogdi-bin pcscd libqscintilla2-doc qtwayland5 2021-05-17T21:36:31.0933566Z qt5-qmltooling-plugins pinentry-doc python-cycler-doc python-future-doc 2021-05-17T21:36:31.0935010Z python3-genshi python3-lxml-dbg python-lxml-doc dvipng gir1.2-gtk-3.0 2021-05-17T21:36:31.0936471Z inkscape ipython3 python-matplotlib-doc python3-cairocffi python3-gi-cairo 2021-05-17T21:36:31.0937852Z python3-gobject python3-nose python3-scipy python3-tornado 2021-05-17T21:36:31.0939252Z texlive-extra-utils texlive-latex-extra ttf-staypuft python-numpy-doc 2021-05-17T21:36:31.0940783Z python3-pytest python3-numpy-dbg owslib-doc python-pil-doc python3-pil-dbg 2021-05-17T21:36:31.0942468Z python3-pandas python3-ipykernel python-psycopg2-doc python-pyparsing-doc 2021-05-17T21:36:31.0943991Z python3-pyqt5-dbg otb-qgis saga tix python3-tk-dbg qt5-doc comgt wvdial 2021-05-17T21:36:31.0945083Z wpagui libengine-pkcs11-openssl 2021-05-17T21:36:31.1907280Z The following NEW packages will be installed: 2021-05-17T21:36:31.1909767Z avahi-daemon blt fonts-lyx gcr gdal-bin gdal-data geoclue-2.0 gnome-keyring 2021-05-17T21:36:31.1911659Z gnome-keyring-pkcs11 grass-core grass-doc gstreamer1.0-plugins-base 2021-05-17T21:36:31.1913501Z iio-sensor-proxy libarmadillo9 libarpack2 libassimp5 libavahi-core7 2021-05-17T21:36:31.1915305Z libavahi-glib1 libcdparanoia0 libcfitsio8 libcharls2 libdaemon0 libdap25 2021-05-17T21:36:31.1917121Z libdapclient6v5 libdouble-conversion3 libegl-mesa0 libegl1 libepsilon1 2021-05-17T21:36:31.1919746Z libevdev2 libexiv2-27 libfcgi-bin libfcgi0ldbl libfreexl1 libfyba0 2021-05-17T21:36:31.1921370Z libgck-1-0 libgcr-base-3-1 libgcr-ui-3-1 libgdal26 libgeos-3.8.0 2021-05-17T21:36:31.1923093Z libgeos-c1v5 libgeotiff5 libgstreamer-plugins-base1.0-0 libhdf4-0-alt 2021-05-17T21:36:31.1925194Z libhyphen0 libimagequant0 libinput-bin libinput10 libjs-jquery-ui 2021-05-17T21:36:31.1926814Z libjs-leaflet libkmlbase1 libkmldom1 libkmlengine1 liblaszip8 libmbim-glib4 2021-05-17T21:36:31.1928492Z libmbim-proxy libminizip1 libmm-glib0 libmtdev1 libnetcdf15 libnl-genl-3-200 2021-05-17T21:36:31.1930174Z libnl-route-3-200 libnss-mdns libogdi4.1 liborc-0.4-0 libpam-gnome-keyring 2021-05-17T21:36:31.1931899Z libpcsclite1 libpdal-base9 libpdal-plugin-faux libpdal-plugin-icebridge 2021-05-17T21:36:31.1933799Z libpdal-plugin-pgpointcloud libpdal-plugin-python libpdal-plugin-sqlite 2021-05-17T21:36:31.1935759Z libpdal-plugins libpdal-util9 libproj15 libqca-qt5-2 libqca-qt5-2-plugins 2021-05-17T21:36:31.1937747Z libqgis-3d3.10.4 libqgis-analysis3.10.4 libqgis-app3.10.4 libqgis-core3.10.4 2021-05-17T21:36:31.1939415Z libqgis-customwidgets libqgis-gui3.10.4 libqgis-native3.10.4 2021-05-17T21:36:31.1941410Z libqgis-server3.10.4 libqgisgrass7-3.10.4 libqgispython3.10.4 libqhull7 2021-05-17T21:36:31.1943591Z libqmi-glib5 libqmi-proxy libqscintilla2-qt5-15 libqscintilla2-qt5-l10n 2021-05-17T21:36:31.1945145Z libqt53danimation5 libqt53dcore5 libqt53dextras5 libqt53dinput5 2021-05-17T21:36:31.1948298Z libqt53dlogic5 libqt53dquickscene2d5 libqt53drender5 libqt5concurrent5 2021-05-17T21:36:31.1949599Z libqt5core5a libqt5dbus5 libqt5designer5 libqt5designercomponents5 2021-05-17T21:36:31.1950808Z libqt5gui5 libqt5help5 libqt5keychain1 libqt5network5 libqt5opengl5 2021-05-17T21:36:31.1951981Z libqt5positioning5 libqt5printsupport5 libqt5qml5 libqt5quick5 2021-05-17T21:36:31.1953168Z libqt5quickwidgets5 libqt5sensors5 libqt5serialport5 libqt5sql5 2021-05-17T21:36:31.1954667Z libqt5sql5-sqlite libqt5svg5 libqt5test5 libqt5webchannel5 libqt5webkit5 2021-05-17T21:36:31.1956110Z libqt5widgets5 libqt5xml5 libqwt-qt5-6 libspatialindex6 libspatialite7 2021-05-17T21:36:31.1957576Z libsqlite3-mod-spatialite libsuperlu5 liburiparser1 libvisual-0.4-0 2021-05-17T21:36:31.1959247Z libwacom-bin libwacom-common libwacom2 libwoff1 libxcb-icccm4 libxcb-image0 2021-05-17T21:36:31.1960710Z libxcb-keysyms1 libxcb-randr0 libxcb-render-util0 libxcb-util1 2021-05-17T21:36:31.1962030Z libxcb-xinerama0 libxcb-xinput0 libxcb-xkb1 libxerces-c3.2 2021-05-17T21:36:31.1963298Z libxkbcommon-x11-0 libzip5 modemmanager p11-kit p11-kit-modules 2021-05-17T21:36:31.1964685Z pinentry-gnome3 proj-bin proj-data python-matplotlib-data python3-bs4 2021-05-17T21:36:31.1966094Z python3-cycler python3-dateutil python3-decorator python3-future 2021-05-17T21:36:31.1967631Z python3-gdal python3-html5lib python3-ipython-genutils python3-jupyter-core 2021-05-17T21:36:31.1969162Z python3-kiwisolver python3-lxml python3-matplotlib python3-nbformat 2021-05-17T21:36:31.1970586Z python3-numpy python3-olefile python3-owslib python3-pil python3-plotly 2021-05-17T21:36:31.1971988Z python3-psycopg2 python3-pyparsing python3-pyproj python3-pyqt5 2021-05-17T21:36:31.1973362Z python3-pyqt5.qsci python3-pyqt5.qtsql python3-pyqt5.qtsvg 2021-05-17T21:36:31.1974803Z python3-pyqt5.qtwebkit python3-qgis python3-qgis-common python3-retrying 2021-05-17T21:36:31.1977667Z python3-sip python3-soupsieve python3-tk python3-traitlets python3-tz 2021-05-17T21:36:31.1979194Z python3-webencodings qdoc-qt5 qgis qgis-common qgis-plugin-grass 2021-05-17T21:36:31.1980875Z qgis-plugin-grass-common qgis-provider-grass qgis-providers 2021-05-17T21:36:31.1983454Z qgis-providers-common qhelpgenerator-qt5 qt3d-assimpsceneimport-plugin 2021-05-17T21:36:31.1985157Z qt3d-defaultgeometryloader-plugin qt3d-gltfsceneio-plugin 2021-05-17T21:36:31.1986597Z qt3d-scene2d-plugin qt5-assistant qt5-gtk-platformtheme 2021-05-17T21:36:31.1987996Z qt5-image-formats-plugins qtattributionsscanner-qt5 qtchooser 2021-05-17T21:36:31.1990149Z qttools5-dev-tools qttranslations5-l10n tk8.6-blt2.5 ttf-bitstream-vera 2021-05-17T21:36:31.1991457Z usb-modeswitch usb-modeswitch-data wpasupplicant 2021-05-17T21:36:32.0357694Z 0 upgraded, 214 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:36:32.0360178Z Need to get 183 MB of archives. 2021-05-17T21:36:32.0361608Z After this operation, 776 MB of additional disk space will be used. 2021-05-17T21:36:32.0363995Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdouble-conversion3 amd64 3.1.5-4ubuntu1 [37.9 kB] 2021-05-17T21:36:32.0366779Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5core5a amd64 5.12.8+dfsg-0ubuntu1 [2005 kB] 2021-05-17T21:36:32.0369456Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl-mesa0 amd64 20.2.6-0ubuntu0.20.04.1 [97.7 kB] 2021-05-17T21:36:32.0371667Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libegl1 amd64 1.3.2-1~ubuntu0.20.04.1 [31.9 kB] 2021-05-17T21:36:32.0374172Z Get:5 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libevdev2 amd64 1.9.0+dfsg-1ubuntu0.1 [31.6 kB] 2021-05-17T21:36:32.0377138Z Get:6 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmtdev1 amd64 1.1.5-1.1 [14.2 kB] 2021-05-17T21:36:32.0379698Z Get:7 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-common all 1.3-2ubuntu3 [45.3 kB] 2021-05-17T21:36:32.0381824Z Get:8 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom2 amd64 1.3-2ubuntu3 [20.0 kB] 2021-05-17T21:36:32.0384959Z Get:9 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput-bin amd64 1.15.5-1ubuntu0.2 [19.1 kB] 2021-05-17T21:36:32.0387454Z Get:10 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libinput10 amd64 1.15.5-1ubuntu0.2 [112 kB] 2021-05-17T21:36:32.0389854Z Get:11 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5dbus5 amd64 5.12.8+dfsg-0ubuntu1 [208 kB] 2021-05-17T21:36:32.0392023Z Get:12 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5network5 amd64 5.12.8+dfsg-0ubuntu1 [674 kB] 2021-05-17T21:36:32.0395521Z Get:13 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-icccm4 amd64 0.4.1-1.1 [10.8 kB] 2021-05-17T21:36:32.0397689Z Get:14 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-util1 amd64 0.4.0-0ubuntu3 [11.2 kB] 2021-05-17T21:36:32.0399694Z Get:15 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-image0 amd64 0.4.0-1build1 [12.3 kB] 2021-05-17T21:36:32.0402859Z Get:16 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-keysyms1 amd64 0.4.0-1build1 [8452 B] 2021-05-17T21:36:32.0404578Z Get:17 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-randr0 amd64 1.14-2 [16.3 kB] 2021-05-17T21:36:32.0406239Z Get:18 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-render-util0 amd64 0.3.9-1build1 [9912 B] 2021-05-17T21:36:32.0407924Z Get:19 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinerama0 amd64 1.14-2 [5260 B] 2021-05-17T21:36:32.0409712Z Get:20 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xinput0 amd64 1.14-2 [29.3 kB] 2021-05-17T21:36:32.0411346Z Get:21 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxcb-xkb1 amd64 1.14-2 [29.6 kB] 2021-05-17T21:36:32.0413379Z Get:22 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libxkbcommon-x11-0 amd64 0.10.0-1 [13.4 kB] 2021-05-17T21:36:32.0415254Z Get:23 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5gui5 amd64 5.12.8+dfsg-0ubuntu1 [2971 kB] 2021-05-17T21:36:32.0417181Z Get:24 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5widgets5 amd64 5.12.8+dfsg-0ubuntu1 [2293 kB] 2021-05-17T21:36:32.0418889Z Get:25 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5svg5 amd64 5.12.8-0ubuntu1 [131 kB] 2021-05-17T21:36:32.0420919Z Get:26 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 liborc-0.4-0 amd64 1:0.4.31-1 [188 kB] 2021-05-17T21:36:32.0424074Z Get:27 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgstreamer-plugins-base1.0-0 amd64 1.16.2-4 [735 kB] 2021-05-17T21:36:32.0426130Z Get:28 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libhyphen0 amd64 2.8.8-7 [27.0 kB] 2021-05-17T21:36:32.0428825Z Get:29 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5positioning5 amd64 5.12.8+dfsg-0ubuntu1 [197 kB] 2021-05-17T21:36:32.0430989Z Get:30 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5printsupport5 amd64 5.12.8+dfsg-0ubuntu1 [193 kB] 2021-05-17T21:36:32.0432815Z Get:31 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5qml5 amd64 5.12.8-0ubuntu1 [1438 kB] 2021-05-17T21:36:32.0434766Z Get:32 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quick5 amd64 5.12.8-0ubuntu1 [1335 kB] 2021-05-17T21:36:32.0436820Z Get:33 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sensors5 amd64 5.12.8-0ubuntu1 [114 kB] 2021-05-17T21:36:32.0438830Z Get:34 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webchannel5 amd64 5.12.8-0ubuntu1 [51.2 kB] 2021-05-17T21:36:32.0440662Z Get:35 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libwoff1 amd64 1.0.2-1build2 [42.0 kB] 2021-05-17T21:36:32.0443024Z Get:36 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5webkit5 amd64 5.212.0~alpha4-1ubuntu2 [12.1 MB] 2021-05-17T21:36:32.0445048Z Get:37 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-image-formats-plugins amd64 5.12.8-0ubuntu1 [43.4 kB] 2021-05-17T21:36:32.0447940Z Get:38 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers-common all 3.10.4+dfsg-1ubuntu2 [897 kB] 2021-05-17T21:36:32.0449822Z Get:39 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2 amd64 2.2.1-2build1 [307 kB] 2021-05-17T21:36:32.0451969Z Get:40 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqca-qt5-2-plugins amd64 2.2.1-2build1 [191 kB] 2021-05-17T21:36:32.0454174Z Get:41 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5 amd64 5.12.8+dfsg-0ubuntu1 [121 kB] 2021-05-17T21:36:32.0456143Z Get:42 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5sql5-sqlite amd64 5.12.8+dfsg-0ubuntu1 [47.5 kB] 2021-05-17T21:36:32.0458233Z Get:43 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-data all 3.0.4+dfsg-1build3 [186 kB] 2021-05-17T21:36:32.0460099Z Get:44 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarpack2 amd64 3.7.0-3 [92.8 kB] 2021-05-17T21:36:32.0462492Z Get:45 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsuperlu5 amd64 5.2.1+dfsg1-4 [159 kB] 2021-05-17T21:36:32.0464821Z Get:46 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libarmadillo9 amd64 1:9.800.4+dfsg-1build1 [93.2 kB] 2021-05-17T21:36:32.0467124Z Get:47 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcfitsio8 amd64 3.470-3 [466 kB] 2021-05-17T21:36:32.0470093Z Get:48 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libcharls2 amd64 2.0.0+dfsg-1build1 [74.1 kB] 2021-05-17T21:36:32.0472463Z Get:49 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdap25 amd64 3.20.5-1 [435 kB] 2021-05-17T21:36:32.0474233Z Get:50 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libdapclient6v5 amd64 3.20.5-1 [92.2 kB] 2021-05-17T21:36:32.0476632Z Get:51 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libepsilon1 amd64 0.9.2+dfsg-4 [41.0 kB] 2021-05-17T21:36:32.0478842Z Get:52 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfreexl1 amd64 1.0.5-3 [33.4 kB] 2021-05-17T21:36:32.0481052Z Get:53 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfyba0 amd64 4.1.1-6build1 [113 kB] 2021-05-17T21:36:32.0483103Z Get:54 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-3.8.0 amd64 3.8.0-1build1 [535 kB] 2021-05-17T21:36:32.0485129Z Get:55 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeos-c1v5 amd64 3.8.0-1build1 [69.9 kB] 2021-05-17T21:36:32.0487150Z Get:56 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-data all 6.3.1-1 [7647 kB] 2021-05-17T21:36:32.5821466Z Get:57 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libproj15 amd64 6.3.1-1 [925 kB] 2021-05-17T21:36:32.6074880Z Get:58 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgeotiff5 amd64 1.5.1-2 [53.1 kB] 2021-05-17T21:36:32.6089591Z Get:59 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libhdf4-0-alt amd64 4.2.14-1ubuntu1 [268 kB] 2021-05-17T21:36:32.6152059Z Get:60 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libminizip1 amd64 1.1-8build1 [20.2 kB] 2021-05-17T21:36:32.6162658Z Get:61 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liburiparser1 amd64 0.9.3-2 [39.3 kB] 2021-05-17T21:36:32.6176570Z Get:62 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlbase1 amd64 1.3.0-8build1 [45.4 kB] 2021-05-17T21:36:32.6199555Z Get:63 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmldom1 amd64 1.3.0-8build1 [152 kB] 2021-05-17T21:36:32.6251701Z Get:64 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libkmlengine1 amd64 1.3.0-8build1 [72.5 kB] 2021-05-17T21:36:32.6287176Z Get:65 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libnetcdf15 amd64 1:4.7.3-1 [341 kB] 2021-05-17T21:36:32.6393641Z Get:66 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libogdi4.1 amd64 4.1.0+ds-1build1 [198 kB] 2021-05-17T21:36:32.6457181Z Get:67 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqhull7 amd64 2015.2-4 [152 kB] 2021-05-17T21:36:32.6507986Z Get:68 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialite7 amd64 4.3.0a-6build1 [1286 kB] 2021-05-17T21:36:32.6876261Z Get:69 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libxerces-c3.2 amd64 3.2.2+debian-1build3 [878 kB] 2021-05-17T21:36:32.7283351Z Get:70 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libgdal26 amd64 3.0.4+dfsg-1build3 [6156 kB] 2021-05-17T21:36:32.8323806Z Get:71 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5concurrent5 amd64 5.12.8+dfsg-0ubuntu1 [33.5 kB] 2021-05-17T21:36:32.8343272Z Get:72 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5keychain1 amd64 0.10.0-1build1 [48.4 kB] 2021-05-17T21:36:32.8357728Z Get:73 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5serialport5 amd64 5.12.8-0ubuntu1 [33.1 kB] 2021-05-17T21:36:32.8370476Z Get:74 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5xml5 amd64 5.12.8+dfsg-0ubuntu1 [105 kB] 2021-05-17T21:36:32.8393716Z Get:75 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libspatialindex6 amd64 1.9.3-1build1 [266 kB] 2021-05-17T21:36:32.8427205Z Get:76 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libzip5 amd64 1.5.1-0ubuntu1 [46.7 kB] 2021-05-17T21:36:32.8440767Z Get:77 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-core3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [5216 kB] 2021-05-17T21:36:32.9635010Z Get:78 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-native3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [44.5 kB] 2021-05-17T21:36:32.9654129Z Get:79 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-l10n all 2.11.2+dfsg-6 [41.3 kB] 2021-05-17T21:36:32.9660005Z Get:80 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqscintilla2-qt5-15 amd64 2.11.2+dfsg-6 [1238 kB] 2021-05-17T21:36:32.9868606Z Get:81 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5quickwidgets5 amd64 5.12.8-0ubuntu1 [39.8 kB] 2021-05-17T21:36:32.9885160Z Get:82 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5opengl5 amd64 5.12.8+dfsg-0ubuntu1 [136 kB] 2021-05-17T21:36:32.9903772Z Get:83 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqwt-qt5-6 amd64 6.1.4-1.1build1 [427 kB] 2021-05-17T21:36:32.9981271Z Get:84 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-gui3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3195 kB] 2021-05-17T21:36:33.0742048Z Get:85 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-providers amd64 3.10.4+dfsg-1ubuntu2 [1940 kB] 2021-05-17T21:36:33.1095520Z Get:86 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-core7 amd64 0.7-4ubuntu7 [81.7 kB] 2021-05-17T21:36:33.1107575Z Get:87 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libdaemon0 amd64 0.14-7 [13.9 kB] 2021-05-17T21:36:33.1113317Z Get:88 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 avahi-daemon amd64 0.7-4ubuntu7 [61.0 kB] 2021-05-17T21:36:33.1148192Z Get:89 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 tk8.6-blt2.5 amd64 2.5.3+dfsg-4 [572 kB] 2021-05-17T21:36:33.1310916Z Get:90 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 blt amd64 2.5.3+dfsg-4 [4944 B] 2021-05-17T21:36:33.1318636Z Get:91 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 fonts-lyx all 2.3.4.2-2 [154 kB] 2021-05-17T21:36:33.1353150Z Get:92 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgck-1-0 amd64 3.36.0-2build1 [75.5 kB] 2021-05-17T21:36:33.1385658Z Get:93 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-base-3-1 amd64 3.36.0-2build1 [193 kB] 2021-05-17T21:36:33.1434505Z Get:94 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libgcr-ui-3-1 amd64 3.36.0-2build1 [127 kB] 2021-05-17T21:36:33.1468750Z Get:95 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gcr amd64 3.36.0-2build1 [63.9 kB] 2021-05-17T21:36:33.1485283Z Get:96 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-numpy amd64 1:1.17.4-5ubuntu3 [2725 kB] 2021-05-17T21:36:33.2016887Z Get:97 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-gdal amd64 3.0.4+dfsg-1build3 [527 kB] 2021-05-17T21:36:33.2115947Z Get:98 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 gdal-bin amd64 3.0.4+dfsg-1build3 [256 kB] 2021-05-17T21:36:33.2156528Z Get:99 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libavahi-glib1 amd64 0.7-4ubuntu7 [7804 B] 2021-05-17T21:36:33.2161116Z Get:100 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmm-glib0 amd64 1.12.8-1 [185 kB] 2021-05-17T21:36:33.2195029Z Get:101 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 geoclue-2.0 amd64 2.5.6-0ubuntu1 [91.9 kB] 2021-05-17T21:36:33.2233982Z Get:102 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit-modules amd64 0.23.20-1ubuntu0.1 [231 kB] 2021-05-17T21:36:33.2288898Z Get:103 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 p11-kit amd64 0.23.20-1ubuntu0.1 [93.8 kB] 2021-05-17T21:36:33.2312171Z Get:104 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 pinentry-gnome3 amd64 1.1.0-3build1 [38.6 kB] 2021-05-17T21:36:33.2320602Z Get:105 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring amd64 3.36.0-1ubuntu1 [613 kB] 2021-05-17T21:36:33.2442058Z Get:106 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gnome-keyring-pkcs11 amd64 3.36.0-1ubuntu1 [28.0 kB] 2021-05-17T21:36:33.2459771Z Get:107 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-doc all 7.8.2-1build3 [32.4 MB] 2021-05-17T21:36:33.8462542Z Get:108 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 liblaszip8 amd64 3.4.3-1build1 [125 kB] 2021-05-17T21:36:33.8483387Z Get:109 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-util9 amd64 2.0.1+ds-1build3 [68.5 kB] 2021-05-17T21:36:33.8497907Z Get:110 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-base9 amd64 2.0.1+ds-1build3 [1739 kB] 2021-05-17T21:36:33.8686463Z Get:111 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 grass-core amd64 7.8.2-1build3 [5737 kB] 2021-05-17T21:36:33.9681624Z Get:112 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libcdparanoia0 amd64 3.10.2+debian-13 [46.7 kB] 2021-05-17T21:36:33.9698672Z Get:113 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libvisual-0.4-0 amd64 0.4.0-17 [99.8 kB] 2021-05-17T21:36:33.9715385Z Get:114 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 gstreamer1.0-plugins-base amd64 1.16.2-4 [619 kB] 2021-05-17T21:36:33.9821966Z Get:115 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 iio-sensor-proxy amd64 2.8-1ubuntu1 [35.8 kB] 2021-05-17T21:36:33.9833284Z Get:116 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libassimp5 amd64 5.0.1~ds0-1build1 [2775 kB] 2021-05-17T21:36:34.0231124Z Get:117 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libexiv2-27 amd64 0.27.2-8ubuntu2.2 [788 kB] 2021-05-17T21:36:34.0351382Z Get:118 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi0ldbl amd64 2.4.0-10build1 [155 kB] 2021-05-17T21:36:34.0360147Z Get:119 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libfcgi-bin amd64 2.4.0-10build1 [10.5 kB] 2021-05-17T21:36:34.0365888Z Get:120 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libimagequant0 amd64 2.12.2-1.1 [31.4 kB] 2021-05-17T21:36:34.0386682Z Get:121 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB] 2021-05-17T21:36:34.0406154Z Get:122 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-glib4 amd64 1.22.0-2 [101 kB] 2021-05-17T21:36:34.0423336Z Get:123 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libmbim-proxy amd64 1.22.0-2 [5908 B] 2021-05-17T21:36:34.0429341Z Get:124 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-genl-3-200 amd64 3.4.0-1 [11.1 kB] 2021-05-17T21:36:34.0434398Z Get:125 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnl-route-3-200 amd64 3.4.0-1 [149 kB] 2021-05-17T21:36:34.0455666Z Get:126 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libnss-mdns amd64 0.14.1-1ubuntu1 [22.9 kB] 2021-05-17T21:36:34.0463015Z Get:127 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpam-gnome-keyring amd64 3.36.0-1ubuntu1 [23.3 kB] 2021-05-17T21:36:34.0470268Z Get:128 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libpcsclite1 amd64 1.8.26-3 [22.0 kB] 2021-05-17T21:36:34.0480949Z Get:129 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-faux amd64 2.0.1+ds-1build3 [27.3 kB] 2021-05-17T21:36:34.0489114Z Get:130 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-icebridge amd64 2.0.1+ds-1build3 [42.8 kB] 2021-05-17T21:36:34.0501866Z Get:131 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-pgpointcloud amd64 2.0.1+ds-1build3 [75.3 kB] 2021-05-17T21:36:34.0518513Z Get:132 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-python amd64 2.0.1+ds-1build3 [136 kB] 2021-05-17T21:36:34.0549551Z Get:133 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libsqlite3-mod-spatialite amd64 4.3.0a-6build1 [1265 kB] 2021-05-17T21:36:34.0745992Z Get:134 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugin-sqlite amd64 2.0.1+ds-1build3 [89.5 kB] 2021-05-17T21:36:34.0758829Z Get:135 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libpdal-plugins amd64 2.0.1+ds-1build3 [12.9 kB] 2021-05-17T21:36:34.0766747Z Get:136 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dcore5 amd64 5.12.8+dfsg-0ubuntu1 [137 kB] 2021-05-17T21:36:34.0788878Z Get:137 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53drender5 amd64 5.12.8+dfsg-0ubuntu1 [689 kB] 2021-05-17T21:36:34.0880065Z Get:138 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53danimation5 amd64 5.12.8+dfsg-0ubuntu1 [159 kB] 2021-05-17T21:36:34.0901061Z Get:139 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dinput5 amd64 5.12.8+dfsg-0ubuntu1 [125 kB] 2021-05-17T21:36:34.0919360Z Get:140 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dlogic5 amd64 5.12.8+dfsg-0ubuntu1 [25.9 kB] 2021-05-17T21:36:34.0929786Z Get:141 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dextras5 amd64 5.12.8+dfsg-0ubuntu1 [157 kB] 2021-05-17T21:36:34.0962276Z Get:142 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-assimpsceneimport-plugin amd64 5.12.8+dfsg-0ubuntu1 [45.2 kB] 2021-05-17T21:36:34.0971140Z Get:143 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-defaultgeometryloader-plugin amd64 5.12.8+dfsg-0ubuntu1 [33.3 kB] 2021-05-17T21:36:34.0979851Z Get:144 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-gltfsceneio-plugin amd64 5.12.8+dfsg-0ubuntu1 [110 kB] 2021-05-17T21:36:34.0997366Z Get:145 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt53dquickscene2d5 amd64 5.12.8+dfsg-0ubuntu1 [38.4 kB] 2021-05-17T21:36:34.1005571Z Get:146 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt3d-scene2d-plugin amd64 5.12.8+dfsg-0ubuntu1 [17.1 kB] 2021-05-17T21:36:34.1012004Z Get:147 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-3d3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [224 kB] 2021-05-17T21:36:34.1046610Z Get:148 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-analysis3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [927 kB] 2021-05-17T21:36:34.1173477Z Get:149 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-app3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [3060 kB] 2021-05-17T21:36:34.1570013Z Get:150 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtchooser amd64 66-2build1 [24.7 kB] 2021-05-17T21:36:34.1580680Z Get:151 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qdoc-qt5 amd64 5.12.8-0ubuntu1 [507 kB] 2021-05-17T21:36:34.1646360Z Get:152 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5help5 amd64 5.12.8-0ubuntu1 [134 kB] 2021-05-17T21:36:34.1661745Z Get:153 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qhelpgenerator-qt5 amd64 5.12.8-0ubuntu1 [64.3 kB] 2021-05-17T21:36:34.1677209Z Get:154 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-assistant amd64 5.12.8-0ubuntu1 [369 kB] 2021-05-17T21:36:34.1732628Z Get:155 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qtattributionsscanner-qt5 amd64 5.12.8-0ubuntu1 [26.0 kB] 2021-05-17T21:36:34.1735079Z Get:156 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designer5 amd64 5.12.8-0ubuntu1 [2778 kB] 2021-05-17T21:36:34.2095580Z Get:157 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5designercomponents5 amd64 5.12.8-0ubuntu1 [718 kB] 2021-05-17T21:36:34.2187424Z Get:158 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttools5-dev-tools amd64 5.12.8-0ubuntu1 [1031 kB] 2021-05-17T21:36:34.2321948Z Get:159 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-customwidgets amd64 3.10.4+dfsg-1ubuntu2 [3397 kB] 2021-05-17T21:36:34.2820221Z Get:160 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgis-server3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [311 kB] 2021-05-17T21:36:34.2860839Z Get:161 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgisgrass7-3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [228 kB] 2021-05-17T21:36:34.2897520Z Get:162 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqgispython3.10.4 amd64 3.10.4+dfsg-1ubuntu2 [43.1 kB] 2021-05-17T21:36:34.2907983Z Get:163 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-glib5 amd64 1.24.8-1 [529 kB] 2021-05-17T21:36:34.2983829Z Get:164 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 libqmi-proxy amd64 1.24.8-1 [5856 B] 2021-05-17T21:36:34.2989759Z Get:165 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libqt5test5 amd64 5.12.8+dfsg-0ubuntu1 [131 kB] 2021-05-17T21:36:34.3018767Z Get:166 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libwacom-bin amd64 1.3-2ubuntu3 [5484 B] 2021-05-17T21:36:34.3023766Z Get:167 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 modemmanager amd64 1.12.8-1 [755 kB] 2021-05-17T21:36:34.3124079Z Get:168 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 ttf-bitstream-vera all 1.10-8 [352 kB] 2021-05-17T21:36:34.3192211Z Get:169 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python-matplotlib-data all 3.1.2-1ubuntu4 [3788 kB] 2021-05-17T21:36:34.3899345Z Get:170 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-soupsieve all 1.9.5+dfsg-1 [29.1 kB] 2021-05-17T21:36:34.3901803Z Get:171 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-bs4 all 4.8.2-1 [83.0 kB] 2021-05-17T21:36:34.3916063Z Get:172 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-cycler all 0.10.0-3 [8132 B] 2021-05-17T21:36:34.3919239Z Get:173 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-dateutil all 2.7.3-3ubuntu1 [63.3 kB] 2021-05-17T21:36:34.3934226Z Get:174 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-decorator all 4.4.2-0ubuntu1 [10.3 kB] 2021-05-17T21:36:34.3937476Z Get:175 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-future all 0.18.2-2 [336 kB] 2021-05-17T21:36:34.4116644Z Get:176 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-webencodings all 0.5.1-1ubuntu1 [11.0 kB] 2021-05-17T21:36:34.4118630Z Get:177 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-html5lib all 1.0.1-2 [84.3 kB] 2021-05-17T21:36:34.4133263Z Get:178 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-ipython-genutils all 0.2.0-1ubuntu1 [21.1 kB] 2021-05-17T21:36:34.4140953Z Get:179 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-traitlets all 4.3.3-3 [59.9 kB] 2021-05-17T21:36:34.4149323Z Get:180 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-jupyter-core all 4.6.3-3 [41.2 kB] 2021-05-17T21:36:34.4157311Z Get:181 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-kiwisolver amd64 1.0.1-3build1 [61.3 kB] 2021-05-17T21:36:34.4159928Z Get:182 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-lxml amd64 4.5.0-1ubuntu0.3 [1382 kB] 2021-05-17T21:36:34.4332935Z Get:183 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-pyparsing all 2.4.6-1 [61.3 kB] 2021-05-17T21:36:34.4350413Z Get:184 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-matplotlib amd64 3.1.2-1ubuntu4 [4459 kB] 2021-05-17T21:36:34.5312067Z Get:185 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-nbformat all 5.0.4-1 [29.8 kB] 2021-05-17T21:36:34.5314689Z Get:186 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-olefile all 0.46-2 [33.7 kB] 2021-05-17T21:36:34.5324702Z Get:187 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyproj amd64 2.5.0+ds-1 [297 kB] 2021-05-17T21:36:34.5374059Z Get:188 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-tz all 2019.3-1 [24.4 kB] 2021-05-17T21:36:34.5384801Z Get:189 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-owslib all 0.19.1-1 [115 kB] 2021-05-17T21:36:34.5410159Z Get:190 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-pil amd64 7.0.0-4ubuntu0.3 [363 kB] 2021-05-17T21:36:34.5482144Z Get:191 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-retrying all 1.3.3-4 [8160 B] 2021-05-17T21:36:34.5484473Z Get:192 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-plotly all 4.4.1+dfsg-1 [1960 kB] 2021-05-17T21:36:34.5814670Z Get:193 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 python3-psycopg2 amd64 2.8.4-2 [112 kB] 2021-05-17T21:36:34.5837239Z Get:194 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-sip amd64 4.19.21+dfsg-1build1 [87.9 kB] 2021-05-17T21:36:34.5857584Z Get:195 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5 amd64 5.14.1+dfsg-3build1 [2318 kB] 2021-05-17T21:36:34.6311531Z Get:196 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qsci amd64 2.11.2+dfsg-6 [230 kB] 2021-05-17T21:36:34.6372000Z Get:197 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsql amd64 5.14.1+dfsg-3build1 [87.5 kB] 2021-05-17T21:36:34.6389827Z Get:198 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtsvg amd64 5.14.1+dfsg-3build1 [26.9 kB] 2021-05-17T21:36:34.6400375Z Get:199 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-pyqt5.qtwebkit amd64 5.14.1+dfsg-3build1 [103 kB] 2021-05-17T21:36:34.6447651Z Get:200 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis-common all 3.10.4+dfsg-1ubuntu2 [2390 kB] 2021-05-17T21:36:34.6891468Z Get:201 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 python3-qgis amd64 3.10.4+dfsg-1ubuntu2 [7772 kB] 2021-05-17T21:36:34.8175880Z Get:202 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 python3-tk amd64 3.8.5-1~20.04.1 [103 kB] 2021-05-17T21:36:34.8226293Z Get:203 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libjs-leaflet all 1.6.0~dfsg-1 [313 kB] 2021-05-17T21:36:34.8365821Z Get:204 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-common all 3.10.4+dfsg-1ubuntu2 [16.7 MB] 2021-05-17T21:36:35.1623976Z Get:205 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis amd64 3.10.4+dfsg-1ubuntu2 [4788 kB] 2021-05-17T21:36:35.2616688Z Get:206 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass-common all 3.10.4+dfsg-1ubuntu2 [463 kB] 2021-05-17T21:36:35.2679008Z Get:207 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-provider-grass amd64 3.10.4+dfsg-1ubuntu2 [92.3 kB] 2021-05-17T21:36:35.2703246Z Get:208 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qgis-plugin-grass amd64 3.10.4+dfsg-1ubuntu2 [601 kB] 2021-05-17T21:36:35.2817727Z Get:209 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qt5-gtk-platformtheme amd64 5.12.8+dfsg-0ubuntu1 [124 kB] 2021-05-17T21:36:35.2842451Z Get:210 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 qttranslations5-l10n all 5.12.8-0ubuntu1 [1486 kB] 2021-05-17T21:36:35.3130060Z Get:211 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 wpasupplicant amd64 2:2.9-1ubuntu4.3 [1183 kB] 2021-05-17T21:36:35.3374331Z Get:212 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 proj-bin amd64 6.3.1-1 [88.8 kB] 2021-05-17T21:36:35.3388435Z Get:213 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch-data all 20191128-3 [32.3 kB] 2021-05-17T21:36:35.3400474Z Get:214 http://azure.archive.ubuntu.com/ubuntu focal/main amd64 usb-modeswitch amd64 2.5.2+repack0-2ubuntu3 [53.1 kB] 2021-05-17T21:36:36.5975378Z Fetched 183 MB in 4s (44.2 MB/s) 2021-05-17T21:36:36.6394622Z Selecting previously unselected package libdouble-conversion3:amd64. 2021-05-17T21:36:36.6481575Z (Reading database ... 2021-05-17T21:36:36.6482247Z (Reading database ... 5% 2021-05-17T21:36:36.6482801Z (Reading database ... 10% 2021-05-17T21:36:36.6483331Z (Reading database ... 15% 2021-05-17T21:36:36.6484207Z (Reading database ... 20% 2021-05-17T21:36:36.6484733Z (Reading database ... 25% 2021-05-17T21:36:36.6485269Z (Reading database ... 30% 2021-05-17T21:36:36.6485806Z (Reading database ... 35% 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(2.5.2+repack0-2ubuntu3) ... 2021-05-17T21:37:13.9311169Z Setting up libarmadillo9 (1:9.800.4+dfsg-1build1) ... 2021-05-17T21:37:13.9355481Z Setting up p11-kit (0.23.20-1ubuntu0.1) ... 2021-05-17T21:37:13.9400386Z Setting up libqt5sensors5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:13.9436812Z Setting up libgck-1-0:amd64 (3.36.0-2build1) ... 2021-05-17T21:37:13.9488613Z Setting up python3-future (0.18.2-2) ... 2021-05-17T21:37:13.9588839Z update-alternatives: using /usr/bin/python3-futurize to provide /usr/bin/futurize (futurize) in auto mode 2021-05-17T21:37:13.9657443Z update-alternatives: using /usr/bin/python3-pasteurize to provide /usr/bin/pasteurize (pasteurize) in auto mode 2021-05-17T21:37:14.3646648Z Setting up qgis-plugin-grass-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:14.5385835Z Setting up libdaemon0:amd64 (0.14-7) ... 2021-05-17T21:37:14.5432357Z Setting up libqt5test5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:14.5471494Z Setting up libavahi-core7:amd64 (0.7-4ubuntu7) ... 2021-05-17T21:37:14.5532908Z Setting up libqca-qt5-2:amd64 (2.2.1-2build1) ... 2021-05-17T21:37:14.5571597Z Setting up python-matplotlib-data (3.1.2-1ubuntu4) ... 2021-05-17T21:37:14.5622981Z Setting up libgcr-base-3-1:amd64 (3.36.0-2build1) ... 2021-05-17T21:37:14.5665836Z Setting up libevdev2:amd64 (1.9.0+dfsg-1ubuntu0.1) ... 2021-05-17T21:37:14.5700561Z Setting up libqt5concurrent5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:14.5737659Z Setting up libpam-gnome-keyring:amd64 (3.36.0-1ubuntu1) ... 2021-05-17T21:37:14.8360409Z Setting up python3-soupsieve (1.9.5+dfsg-1) ... 2021-05-17T21:37:15.0199549Z Setting up python3-jupyter-core (4.6.3-3) ... 2021-05-17T21:37:15.2100377Z Setting up libmbim-glib4:amd64 (1.22.0-2) ... 2021-05-17T21:37:15.2137903Z Setting up qtchooser (66-2build1) ... 2021-05-17T21:37:15.2173764Z Setting up libwacom-common (1.3-2ubuntu3) ... 2021-05-17T21:37:15.2212511Z Setting up python3-sip (4.19.21+dfsg-1build1) ... 2021-05-17T21:37:15.4103882Z Setting up libkmldom1:amd64 (1.3.0-8build1) ... 2021-05-17T21:37:15.4147574Z Setting up libspatialite7:amd64 (4.3.0a-6build1) ... 2021-05-17T21:37:15.4184799Z Setting up libgcr-ui-3-1:amd64 (3.36.0-2build1) ... 2021-05-17T21:37:15.4217584Z Setting up python3-matplotlib (3.1.2-1ubuntu4) ... 2021-05-17T21:37:16.4671740Z Setting up libkmlengine1:amd64 (1.3.0-8build1) ... 2021-05-17T21:37:16.4714473Z Setting up libqt5keychain1:amd64 (0.10.0-1build1) ... 2021-05-17T21:37:16.4752303Z Setting up libsqlite3-mod-spatialite:amd64 (4.3.0a-6build1) ... 2021-05-17T21:37:16.4793979Z Setting up qdoc-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:16.4829736Z Setting up libqt5positioning5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:16.4866170Z Setting up proj-bin (6.3.1-1) ... 2021-05-17T21:37:16.4904328Z Setting up libqca-qt5-2-plugins:amd64 (2.2.1-2build1) ... 2021-05-17T21:37:16.4938351Z Setting up libgstreamer-plugins-base1.0-0:amd64 (1.16.2-4) ... 2021-05-17T21:37:16.4978561Z Setting up geoclue-2.0 (2.5.6-0ubuntu1) ... 2021-05-17T21:37:16.9507065Z geoclue.service is a disabled or a static unit, not starting it. 2021-05-17T21:37:16.9528668Z Setting up libqt5serialport5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:16.9571577Z Setting up python3-nbformat (5.0.4-1) ... 2021-05-17T21:37:17.1512144Z Setting up libmbim-proxy (1.22.0-2) ... 2021-05-17T21:37:17.1549897Z Setting up python3-pyproj (2.5.0+ds-1) ... 2021-05-17T21:37:17.3468425Z Setting up libqt5network5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:17.3506452Z Setting up python3-bs4 (4.8.2-1) ... 2021-05-17T21:37:17.5696082Z Setting up libgeotiff5:amd64 (1.5.1-2) ... 2021-05-17T21:37:17.5734287Z Setting up gcr (3.36.0-2build1) ... 2021-05-17T21:37:17.5773602Z Setting up libqt5sql5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:17.5812158Z Setting up wpasupplicant (2:2.9-1ubuntu4.3) ... 2021-05-17T21:37:17.7666153Z Created symlink /etc/systemd/system/dbus-fi.w1.wpa_supplicant1.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T21:37:17.7668808Z Created symlink /etc/systemd/system/multi-user.target.wants/wpa_supplicant.service → /lib/systemd/system/wpa_supplicant.service. 2021-05-17T21:37:18.3413951Z Setting up python3-pil:amd64 (7.0.0-4ubuntu0.3) ... 2021-05-17T21:37:18.6627777Z Setting up libqt5xml5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:18.6666922Z Setting up gstreamer1.0-plugins-base:amd64 (1.16.2-4) ... 2021-05-17T21:37:18.6709108Z Setting up libqt5qml5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:18.6744461Z Setting up qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:18.6772223Z Setting up qtattributionsscanner-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:18.6811842Z Setting up libqt5webchannel5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:18.6849042Z Setting up python3-plotly (4.4.1+dfsg-1) ... 2021-05-17T21:37:18.8693738Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:18.8697617Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T21:37:18.8702196Z /usr/lib/python3/dist-packages/_plotly_utils/utils.py:214: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:18.8705734Z if (iso_string.split("-")[:3] is "00:00") or (iso_string.split("+")[0] is "00:00"): 2021-05-17T21:37:18.9198217Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:194: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:18.9200978Z if direction is "increasing": 2021-05-17T21:37:18.9204892Z /usr/lib/python3/dist-packages/plotly/figure_factory/_candlestick.py:199: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:18.9208256Z elif direction is "decreasing": 2021-05-17T21:37:18.9416659Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:176: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:18.9420005Z if direction is "increasing": 2021-05-17T21:37:18.9424508Z /usr/lib/python3/dist-packages/plotly/figure_factory/_ohlc.py:179: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:18.9427702Z elif direction is "decreasing": 2021-05-17T21:37:19.9528976Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:460: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:19.9530846Z if props["offset_coordinates"] is "data": 2021-05-17T21:37:19.9533265Z /usr/lib/python3/dist-packages/plotly/matplotlylib/renderer.py:572: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T21:37:19.9534616Z if props["coordinates"] is not "data": 2021-05-17T21:37:20.8931215Z Setting up avahi-daemon (0.7-4ubuntu7) ... 2021-05-17T21:37:21.5946898Z Created symlink /etc/systemd/system/dbus-org.freedesktop.Avahi.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T21:37:21.5950047Z Created symlink /etc/systemd/system/multi-user.target.wants/avahi-daemon.service → /lib/systemd/system/avahi-daemon.service. 2021-05-17T21:37:21.5952562Z Created symlink /etc/systemd/system/sockets.target.wants/avahi-daemon.socket → /lib/systemd/system/avahi-daemon.socket. 2021-05-17T21:37:22.8611181Z Setting up libnss-mdns:amd64 (0.14.1-1ubuntu1) ... 2021-05-17T21:37:22.8636982Z First installation detected... 2021-05-17T21:37:22.8637774Z Checking NSS setup... 2021-05-17T21:37:22.8681996Z Setting up libwacom2:amd64 (1.3-2ubuntu3) ... 2021-05-17T21:37:22.8745064Z Setting up libqt5sql5-sqlite:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:22.8847267Z Setting up python3-owslib (0.19.1-1) ... 2021-05-17T21:37:23.1918222Z Setting up libgdal26 (3.0.4+dfsg-1build3) ... 2021-05-17T21:37:23.1956550Z Setting up libqmi-glib5:amd64 (1.24.8-1) ... 2021-05-17T21:37:23.2012247Z Setting up libpdal-base9 (2.0.1+ds-1build3) ... 2021-05-17T21:37:23.2134502Z Setting up libinput-bin (1.15.5-1ubuntu0.2) ... 2021-05-17T21:37:23.2190294Z Setting up libwacom-bin (1.3-2ubuntu3) ... 2021-05-17T21:37:23.2247551Z Setting up libpdal-plugin-pgpointcloud (2.0.1+ds-1build3) ... 2021-05-17T21:37:23.2304278Z Setting up libpdal-plugin-icebridge (2.0.1+ds-1build3) ... 2021-05-17T21:37:23.2345253Z Setting up libpdal-plugin-python (2.0.1+ds-1build3) ... 2021-05-17T21:37:23.2397934Z Setting up python3-gdal (3.0.4+dfsg-1build3) ... 2021-05-17T21:37:23.4548481Z Setting up libinput10:amd64 (1.15.5-1ubuntu0.2) ... 2021-05-17T21:37:23.4589905Z Setting up libpdal-plugin-faux (2.0.1+ds-1build3) ... 2021-05-17T21:37:23.4634930Z Setting up grass-core (7.8.2-1build3) ... 2021-05-17T21:37:23.8367010Z /usr/lib/grass78/etc/python/grass/pygrass/gis/__init__.py:75: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:23.8368551Z if value is '': 2021-05-17T21:37:23.9453522Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:23.9455123Z if do_profiling is "True" or do_profiling is "1": 2021-05-17T21:37:23.9456287Z /usr/lib/grass78/etc/python/grass/temporal/core.py:65: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:23.9457674Z if do_profiling is "True" or do_profiling is "1": 2021-05-17T21:37:23.9459047Z /usr/lib/grass78/etc/python/grass/temporal/core.py:582: SyntaxWarning: "is not" with a literal. Did you mean "!="? 2021-05-17T21:37:23.9460239Z if driver_string is not None and driver_string is not "": 2021-05-17T21:37:23.9920911Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:23.9922358Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T21:37:23.9923830Z /usr/lib/grass78/etc/python/grass/temporal/temporal_algebra.py:2295: SyntaxWarning: "is" with a literal. Did you mean "=="? 2021-05-17T21:37:23.9924949Z if map_i.get_type() is "raster" or map_i.get_type() is "raster3d": 2021-05-17T21:37:24.0710968Z Setting up libpdal-plugin-sqlite (2.0.1+ds-1build3) ... 2021-05-17T21:37:24.0818062Z Setting up libqt5gui5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.0911152Z Setting up libqmi-proxy (1.24.8-1) ... 2021-05-17T21:37:24.0955264Z Setting up libqt5widgets5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.1058206Z Setting up libqt53dcore5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.1254310Z Setting up libqt5help5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:24.1304192Z Setting up libqt53dlogic5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.1359415Z Setting up qt5-gtk-platformtheme:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.1405356Z Setting up libqgis-native3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:24.1466458Z Setting up libqt5printsupport5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.1511725Z Setting up gdal-bin (3.0.4+dfsg-1build3) ... 2021-05-17T21:37:24.2536571Z Setting up qt5-image-formats-plugins:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:24.2573303Z Setting up libqt53dinput5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.2612617Z Setting up libqt5opengl5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:24.2650565Z Setting up modemmanager (1.12.8-1) ... 2021-05-17T21:37:24.4146354Z Created symlink /etc/systemd/system/dbus-org.freedesktop.ModemManager1.service → /lib/systemd/system/ModemManager.service. 2021-05-17T21:37:24.4148712Z Created symlink /etc/systemd/system/multi-user.target.wants/ModemManager.service → /lib/systemd/system/ModemManager.service. 2021-05-17T21:37:25.0162418Z Setting up libqt5quick5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.0220581Z Setting up libqt5designer5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.0278375Z Setting up libpdal-plugins (2.0.1+ds-1build3) ... 2021-05-17T21:37:25.0321019Z Setting up libqt5svg5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.0384531Z Setting up libqt53drender5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:25.0435703Z Setting up qhelpgenerator-qt5 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.0529706Z Setting up libqwt-qt5-6 (6.1.4-1.1build1) ... 2021-05-17T21:37:25.0576143Z Setting up libqscintilla2-qt5-15 (2.11.2+dfsg-6) ... 2021-05-17T21:37:25.0689201Z Setting up libqt5webkit5:amd64 (5.212.0~alpha4-1ubuntu2) ... 2021-05-17T21:37:25.0758397Z Setting up libqt5designercomponents5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.0820747Z Setting up libqt5quickwidgets5:amd64 (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.0866337Z Setting up libqgis-core3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:25.0904726Z Setting up libqt53dquickscene2d5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:25.0945327Z Setting up libqgis-gui3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:25.0999109Z Setting up libqgis-analysis3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:25.1051050Z Setting up qt5-assistant (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.1091065Z Setting up qttools5-dev-tools (5.12.8-0ubuntu1) ... 2021-05-17T21:37:25.1144013Z Setting up libqgispython3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:37:25.1191106Z Setting up qt3d-scene2d-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:25.1264658Z Setting up python3-pyqt5 (5.14.1+dfsg-3build1) ... 2021-05-17T21:37:25.3661893Z Setting up python3-pyqt5.qtsvg (5.14.1+dfsg-3build1) ... 2021-05-17T21:37:25.3763894Z Setting up libqt53danimation5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:25.3813176Z Setting up qt3d-defaultgeometryloader-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:37:25.3844550Z Setting up qgis-providers (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.3104873Z Setting up libqt53dextras5:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:38:02.3145928Z Setting up python3-pyqt5.qtsql (5.14.1+dfsg-3build1) ... 2021-05-17T21:38:02.3184280Z Setting up libqgis-customwidgets (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.3223899Z Setting up qt3d-gltfsceneio-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:38:02.3266164Z Setting up libqgis-server3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.3304377Z Setting up libqgisgrass7-3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.3339181Z Setting up qt3d-assimpsceneimport-plugin:amd64 (5.12.8+dfsg-0ubuntu1) ... 2021-05-17T21:38:02.3381353Z Setting up python3-qgis-common (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.4963290Z Setting up libqgis-3d3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.5005424Z Setting up python3-pyqt5.qtwebkit (5.14.1+dfsg-3build1) ... 2021-05-17T21:38:02.5045878Z Setting up qgis-provider-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.5083141Z Setting up python3-pyqt5.qsci (2.11.2+dfsg-6) ... 2021-05-17T21:38:02.5121171Z Setting up python3-qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.6986460Z Setting up libqgis-app3.10.4 (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.7020833Z Setting up qgis (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.7077398Z Setting up qgis-plugin-grass (3.10.4+dfsg-1ubuntu2) ... 2021-05-17T21:38:02.7224310Z Processing triggers for dbus (1.12.16-2ubuntu2.1) ... 2021-05-17T21:38:02.7416898Z Processing triggers for shared-mime-info (1.15-1) ... 2021-05-17T21:38:04.0470048Z Processing triggers for fontconfig (2.13.1-2ubuntu3) ... 2021-05-17T21:38:04.0675032Z Processing triggers for mime-support (3.64ubuntu1) ... 2021-05-17T21:38:04.0973267Z Processing triggers for hicolor-icon-theme (0.17-2) ... 2021-05-17T21:38:04.1155310Z Processing triggers for libglib2.0-0:amd64 (2.64.6-1~ubuntu20.04.3) ... 2021-05-17T21:38:04.2083245Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:38:04.2398570Z Processing triggers for systemd (245.4-4ubuntu3.6) ... 2021-05-17T21:38:04.5289920Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:38:16.2646642Z Setting up pinentry-gnome3 (1.1.0-3build1) ... 2021-05-17T21:38:16.2848994Z Setting up gnome-keyring (3.36.0-1ubuntu1) ... 2021-05-17T21:38:18.4890450Z ##[group]Run adigherman/actions/get-repo-name@master 2021-05-17T21:38:18.4891043Z with: 2021-05-17T21:38:18.4891546Z github_slug: neuroconductor/pbj 2021-05-17T21:38:18.4892012Z env: 2021-05-17T21:38:18.4892457Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:38:18.4892959Z TIC_DEPLOY_KEY: 2021-05-17T21:38:18.4893784Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:38:18.4895708Z GITHUB_PAT: *** 2021-05-17T21:38:18.4896554Z COVERALLS_TOKEN: *** 2021-05-17T21:38:18.4897272Z continue-on-error: true 2021-05-17T21:38:18.4897789Z VDIFFR_RUN_TESTS: 2021-05-17T21:38:18.4898322Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:38:18.4898794Z TZ: UTC 2021-05-17T21:38:18.4899218Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:38:18.4899653Z NOT_CRAN: true 2021-05-17T21:38:18.4900064Z ##[endgroup] 2021-05-17T21:38:18.5306434Z repo slug is: neuroconductor/pbj 2021-05-17T21:38:18.5407679Z ##[group]Run adigherman/actions/get-repo-version@master 2021-05-17T21:38:18.5408302Z env: 2021-05-17T21:38:18.5408766Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:38:18.5409266Z TIC_DEPLOY_KEY: 2021-05-17T21:38:18.5410091Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:38:18.5411469Z GITHUB_PAT: *** 2021-05-17T21:38:18.5412308Z COVERALLS_TOKEN: *** 2021-05-17T21:38:18.5412826Z continue-on-error: true 2021-05-17T21:38:18.5413326Z VDIFFR_RUN_TESTS: 2021-05-17T21:38:18.5413840Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:38:18.5414300Z TZ: UTC 2021-05-17T21:38:18.5414712Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:38:18.5415131Z NOT_CRAN: true 2021-05-17T21:38:18.5415529Z ##[endgroup] 2021-05-17T21:38:18.7816264Z ##[group]Run adigherman/actions/get-release-asset@master 2021-05-17T21:38:18.7816991Z with: 2021-05-17T21:38:18.7817332Z repo_name: pbj 2021-05-17T21:38:18.7817682Z repo_version: 0.1.6 2021-05-17T21:38:18.7818042Z runner_os: Linux 2021-05-17T21:38:18.7818389Z R_version: 4.1 2021-05-17T21:38:18.7818882Z env: 2021-05-17T21:38:18.7819292Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:38:18.7819726Z TIC_DEPLOY_KEY: 2021-05-17T21:38:18.7820677Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:38:18.7822054Z GITHUB_PAT: *** 2021-05-17T21:38:18.7823212Z COVERALLS_TOKEN: *** 2021-05-17T21:38:18.7823834Z continue-on-error: true 2021-05-17T21:38:18.7824274Z VDIFFR_RUN_TESTS: 2021-05-17T21:38:18.7824707Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:38:18.7825276Z TZ: UTC 2021-05-17T21:38:18.7825610Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:38:18.7825981Z NOT_CRAN: true 2021-05-17T21:38:18.7826332Z ##[endgroup] 2021-05-17T21:38:18.8263825Z Package: pbj 2021-05-17T21:38:18.8271532Z Version: 0.1.6 2021-05-17T21:38:18.8272272Z OS: Linux 2021-05-17T21:38:18.8347915Z ##[group]Run install.packages('remotes') 2021-05-17T21:38:18.8348653Z install.packages('remotes') 2021-05-17T21:38:18.8349411Z saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) 2021-05-17T21:38:18.8350816Z writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") 2021-05-17T21:38:18.8358558Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:38:18.8359163Z env: 2021-05-17T21:38:18.8359607Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:38:18.8360091Z TIC_DEPLOY_KEY: 2021-05-17T21:38:18.8361245Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:38:18.8362744Z GITHUB_PAT: *** 2021-05-17T21:38:18.8363730Z COVERALLS_TOKEN: *** 2021-05-17T21:38:18.8364381Z continue-on-error: true 2021-05-17T21:38:18.8364833Z VDIFFR_RUN_TESTS: 2021-05-17T21:38:18.8365313Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:38:18.8365773Z TZ: UTC 2021-05-17T21:38:18.8366163Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:38:18.8366559Z NOT_CRAN: true 2021-05-17T21:38:18.8366932Z ##[endgroup] 2021-05-17T21:38:19.0230411Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:38:19.0231649Z (as ‘lib’ is unspecified) 2021-05-17T21:38:36.9545024Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/remotes_2.3.0.tar.gz' 2021-05-17T21:38:37.6383792Z Content type 'binary/octet-stream' length 148709 bytes (145 KB) 2021-05-17T21:38:37.6483557Z ================================================== 2021-05-17T21:38:37.6484489Z downloaded 145 KB 2021-05-17T21:38:37.6485022Z 2021-05-17T21:38:37.9991701Z * installing *source* package ‘remotes’ ... 2021-05-17T21:38:38.0034886Z ** package ‘remotes’ successfully unpacked and MD5 sums checked 2021-05-17T21:38:38.0036161Z ** using staged installation 2021-05-17T21:38:38.0238537Z ** R 2021-05-17T21:38:38.0483946Z ** inst 2021-05-17T21:38:38.0499016Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:38:40.3877694Z ** help 2021-05-17T21:38:40.4839896Z *** installing help indices 2021-05-17T21:38:40.5580201Z ** building package indices 2021-05-17T21:38:40.8263320Z ** installing vignettes 2021-05-17T21:38:40.8327431Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:38:41.0311396Z ** testing if installed package can be loaded from final location 2021-05-17T21:38:41.2782585Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:38:41.2805729Z * DONE (remotes) 2021-05-17T21:38:41.2903794Z 2021-05-17T21:38:41.2904868Z The downloaded source packages are in 2021-05-17T21:38:41.2906751Z ‘/tmp/RtmpJE3aVO/downloaded_packages’ 2021-05-17T21:39:02.4703432Z ##[group]Run actions/cache@v1 2021-05-17T21:39:02.4703849Z with: 2021-05-17T21:39:02.4704253Z path: /home/runner/work/_temp/Library 2021-05-17T21:39:02.4707475Z key: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1-463fb679528f1170ae432fae9d15d46fb1d068cc3825799d90056310cec2bd26 2021-05-17T21:39:02.4711505Z restore-keys: Linux-e3adb7ee20b68d8bd651f6f30d4cc1690a70853cf8f0c4dcbc5c14b00f693a6a-1- 2021-05-17T21:39:02.4712810Z env: 2021-05-17T21:39:02.4713209Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:39:02.4713631Z TIC_DEPLOY_KEY: 2021-05-17T21:39:02.4714370Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:39:02.4716086Z GITHUB_PAT: *** 2021-05-17T21:39:02.4717039Z COVERALLS_TOKEN: *** 2021-05-17T21:39:02.4717498Z continue-on-error: true 2021-05-17T21:39:02.4717919Z VDIFFR_RUN_TESTS: 2021-05-17T21:39:02.4718371Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:39:02.4719028Z TZ: UTC 2021-05-17T21:39:02.4719832Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:39:02.4720241Z NOT_CRAN: true 2021-05-17T21:39:02.4720800Z ##[endgroup] 2021-05-17T21:39:02.5208016Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T21:39:02.5311368Z ##[group]Run Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T21:39:02.5312175Z Rscript -e "remotes::install_github('r-hub/sysreqs')" 2021-05-17T21:39:02.5312862Z sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))") 2021-05-17T21:39:02.5313427Z sudo -s eval "$sysreqs" 2021-05-17T21:39:02.5358324Z shell: /usr/bin/bash -e {0} 2021-05-17T21:39:02.5358673Z env: 2021-05-17T21:39:02.5359090Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:39:02.5359511Z TIC_DEPLOY_KEY: 2021-05-17T21:39:02.5360241Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:39:02.5361588Z GITHUB_PAT: *** 2021-05-17T21:39:02.5362322Z COVERALLS_TOKEN: *** 2021-05-17T21:39:02.5363331Z continue-on-error: true 2021-05-17T21:39:02.5382595Z VDIFFR_RUN_TESTS: 2021-05-17T21:39:02.5383045Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:39:02.5383462Z TZ: UTC 2021-05-17T21:39:02.5383838Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:39:02.5384225Z NOT_CRAN: true 2021-05-17T21:39:02.5384649Z RHUB_PLATFORM: linux-x86_64-ubuntu-gcc 2021-05-17T21:39:02.5385094Z ##[endgroup] 2021-05-17T21:39:02.7482431Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:39:03.3813704Z Downloading GitHub repo r-hub/sysreqs@HEAD 2021-05-17T21:39:22.5358185Z rprojroot (NA -> 2.0.2) [CRAN] 2021-05-17T21:39:22.5359832Z crayon (NA -> 1.4.1) [CRAN] 2021-05-17T21:39:22.5361402Z R6 (NA -> 2.5.0) [CRAN] 2021-05-17T21:39:22.5363010Z desc (NA -> 1.3.0) [CRAN] 2021-05-17T21:39:22.5363962Z debugme (NA -> 1.1.0) [CRAN] 2021-05-17T21:39:22.5392634Z Installing 5 packages: rprojroot, crayon, R6, desc, debugme 2021-05-17T21:39:22.5411621Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:39:22.5412716Z (as ‘lib’ is unspecified) 2021-05-17T21:39:39.9530635Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rprojroot_2.0.2.tar.gz' 2021-05-17T21:39:40.6433620Z Content type 'binary/octet-stream' length 61445 bytes (60 KB) 2021-05-17T21:39:40.6479667Z ================================================== 2021-05-17T21:39:40.6481157Z downloaded 60 KB 2021-05-17T21:39:40.6481777Z 2021-05-17T21:39:40.6518163Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/crayon_1.4.1.tar.gz' 2021-05-17T21:39:41.1707423Z Content type 'binary/octet-stream' length 35834 bytes (34 KB) 2021-05-17T21:39:41.1729177Z ================================================== 2021-05-17T21:39:41.1730384Z downloaded 34 KB 2021-05-17T21:39:41.1730943Z 2021-05-17T21:39:41.1770220Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R6_2.5.0.tar.gz' 2021-05-17T21:39:41.8780926Z Content type 'binary/octet-stream' length 64110 bytes (62 KB) 2021-05-17T21:39:41.8826010Z ================================================== 2021-05-17T21:39:41.8826537Z downloaded 62 KB 2021-05-17T21:39:41.8826821Z 2021-05-17T21:39:41.8866303Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/desc_1.3.0.tar.gz' 2021-05-17T21:39:42.4076492Z Content type 'binary/octet-stream' length 292756 bytes (285 KB) 2021-05-17T21:39:42.4259131Z ================================================== 2021-05-17T21:39:42.4260021Z downloaded 285 KB 2021-05-17T21:39:42.4260735Z 2021-05-17T21:39:42.4304037Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/debugme_1.1.0.tar.gz' 2021-05-17T21:39:43.1137414Z Content type 'application/x-tar' length 997019 bytes (973 KB) 2021-05-17T21:39:43.1377965Z ================================================== 2021-05-17T21:39:43.1378813Z downloaded 973 KB 2021-05-17T21:39:43.1379307Z 2021-05-17T21:39:43.4431643Z * installing *source* package ‘rprojroot’ ... 2021-05-17T21:39:43.4456766Z ** package ‘rprojroot’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:43.4458361Z ** using staged installation 2021-05-17T21:39:43.4617549Z ** R 2021-05-17T21:39:43.4668344Z ** inst 2021-05-17T21:39:43.4680219Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:44.0667163Z ** help 2021-05-17T21:39:44.1000570Z *** installing help indices 2021-05-17T21:39:44.1402286Z *** copying figures 2021-05-17T21:39:44.1408858Z ** building package indices 2021-05-17T21:39:44.4063648Z ** installing vignettes 2021-05-17T21:39:44.4115328Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:44.6205284Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:44.8501086Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:44.8510899Z * DONE (rprojroot) 2021-05-17T21:39:45.1456691Z * installing *source* package ‘crayon’ ... 2021-05-17T21:39:45.1481191Z ** package ‘crayon’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:45.1482327Z ** using staged installation 2021-05-17T21:39:45.1625066Z ** R 2021-05-17T21:39:45.1745233Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:46.2191455Z ** help 2021-05-17T21:39:46.2793607Z *** installing help indices 2021-05-17T21:39:46.3238702Z ** building package indices 2021-05-17T21:39:46.5885231Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:46.7905145Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:46.9938878Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:46.9948846Z * DONE (crayon) 2021-05-17T21:39:47.2576924Z * installing *source* package ‘R6’ ... 2021-05-17T21:39:47.2595839Z ** package ‘R6’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:47.2597044Z ** using staged installation 2021-05-17T21:39:47.2737847Z ** R 2021-05-17T21:39:47.2812304Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:47.9023562Z ** help 2021-05-17T21:39:47.9232308Z *** installing help indices 2021-05-17T21:39:47.9465470Z *** copying figures 2021-05-17T21:39:47.9469405Z ** building package indices 2021-05-17T21:39:48.1808199Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:48.3755137Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:48.5823929Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:48.5832069Z * DONE (R6) 2021-05-17T21:39:48.9613032Z * installing *source* package ‘desc’ ... 2021-05-17T21:39:48.9671435Z ** package ‘desc’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:48.9672751Z ** using staged installation 2021-05-17T21:39:48.9873567Z ** R 2021-05-17T21:39:49.0033326Z ** inst 2021-05-17T21:39:49.0054521Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:50.9263725Z ** help 2021-05-17T21:39:51.0808444Z *** installing help indices 2021-05-17T21:39:51.1971515Z ** building package indices 2021-05-17T21:39:51.5078661Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:51.7516243Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:51.9996711Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:52.0018452Z * DONE (desc) 2021-05-17T21:39:52.2939039Z * installing *source* package ‘debugme’ ... 2021-05-17T21:39:52.2972160Z ** package ‘debugme’ successfully unpacked and MD5 sums checked 2021-05-17T21:39:52.2973401Z ** using staged installation 2021-05-17T21:39:52.3099656Z ** R 2021-05-17T21:39:52.3135952Z ** inst 2021-05-17T21:39:52.3156959Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:52.6703614Z ** help 2021-05-17T21:39:52.6862091Z *** installing help indices 2021-05-17T21:39:52.7120597Z ** building package indices 2021-05-17T21:39:52.9428734Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:53.1546841Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:53.3570665Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:53.3580080Z * DONE (debugme) 2021-05-17T21:39:53.3639872Z 2021-05-17T21:39:53.3640692Z The downloaded source packages are in 2021-05-17T21:39:53.3642198Z ‘/tmp/RtmprgNU7q/downloaded_packages’ 2021-05-17T21:39:53.3658051Z Running `R CMD build`... 2021-05-17T21:39:53.6257821Z * checking for file ‘/tmp/RtmprgNU7q/remotes6973712e772a/r-hub-sysreqs-f068afa/DESCRIPTION’ ... OK 2021-05-17T21:39:53.6260109Z * preparing ‘sysreqs’: 2021-05-17T21:39:53.6261518Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:39:53.6265562Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:39:53.6266370Z * checking for empty or unneeded directories 2021-05-17T21:39:53.6267435Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:39:53.6268372Z * building ‘sysreqs_1.0.0.9000.tar.gz’ 2021-05-17T21:39:53.6269989Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:39:53.6271296Z (as ‘lib’ is unspecified) 2021-05-17T21:39:53.8824756Z * installing *source* package ‘sysreqs’ ... 2021-05-17T21:39:53.8827977Z ** using staged installation 2021-05-17T21:39:53.8986771Z ** R 2021-05-17T21:39:53.9025117Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:39:54.3503167Z ** help 2021-05-17T21:39:54.3745678Z *** installing help indices 2021-05-17T21:39:54.3957966Z ** building package indices 2021-05-17T21:39:54.6103028Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:39:54.8307643Z ** testing if installed package can be loaded from final location 2021-05-17T21:39:55.0525140Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:39:55.0531479Z * DONE (sysreqs) 2021-05-17T21:40:15.1603919Z Hit:1 http://azure.archive.ubuntu.com/ubuntu focal InRelease 2021-05-17T21:40:15.1605923Z Hit:2 http://azure.archive.ubuntu.com/ubuntu focal-updates InRelease 2021-05-17T21:40:15.1625561Z Hit:3 http://azure.archive.ubuntu.com/ubuntu focal-backports InRelease 2021-05-17T21:40:15.2264723Z Hit:4 https://download.mono-project.com/repo/ubuntu stable-focal InRelease 2021-05-17T21:40:15.3627345Z Hit:5 https://packages.microsoft.com/ubuntu/20.04/prod focal InRelease 2021-05-17T21:40:15.4405557Z Hit:6 http://security.ubuntu.com/ubuntu focal-security InRelease 2021-05-17T21:40:15.4972799Z Hit:7 http://ppa.launchpad.net/apt-fast/stable/ubuntu focal InRelease 2021-05-17T21:40:15.7718800Z Hit:8 http://ppa.launchpad.net/cran/travis/ubuntu focal InRelease 2021-05-17T21:40:16.0467476Z Hit:9 http://ppa.launchpad.net/ubuntu-toolchain-r/test/ubuntu focal InRelease 2021-05-17T21:40:17.1976949Z Reading package lists... 2021-05-17T21:40:17.2790241Z Reading package lists... 2021-05-17T21:40:17.4326676Z Building dependency tree... 2021-05-17T21:40:17.4349293Z Reading state information... 2021-05-17T21:40:17.5944437Z libicu-dev is already the newest version (66.1-2ubuntu2). 2021-05-17T21:40:17.5946291Z libicu-dev set to manually installed. 2021-05-17T21:40:17.5947283Z libssl-dev is already the newest version (1.1.1f-1ubuntu2.3). 2021-05-17T21:40:17.5948196Z pandoc is already the newest version (2.7.3-1). 2021-05-17T21:40:17.5949414Z The following additional packages will be installed: 2021-05-17T21:40:17.5952254Z libbibutils6 libghc-pandoc-citeproc-data 2021-05-17T21:40:17.5956954Z Suggested packages: 2021-05-17T21:40:17.5958215Z libcurl4-doc libidn11-dev libldap2-dev librtmp-dev 2021-05-17T21:40:17.6440973Z The following NEW packages will be installed: 2021-05-17T21:40:17.6444406Z libbibutils6 libcurl4-openssl-dev libghc-pandoc-citeproc-data 2021-05-17T21:40:17.6445795Z pandoc-citeproc 2021-05-17T21:40:17.6664758Z 0 upgraded, 4 newly installed, 0 to remove and 33 not upgraded. 2021-05-17T21:40:17.6666138Z Need to get 13.7 MB of archives. 2021-05-17T21:40:17.6667173Z After this operation, 109 MB of additional disk space will be used. 2021-05-17T21:40:17.6670404Z Get:1 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libbibutils6 amd64 6.2-1 [365 kB] 2021-05-17T21:40:17.6755048Z Get:2 http://azure.archive.ubuntu.com/ubuntu focal-updates/main amd64 libcurl4-openssl-dev amd64 7.68.0-1ubuntu2.5 [321 kB] 2021-05-17T21:40:17.6838238Z Get:3 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 libghc-pandoc-citeproc-data all 0.15.0.1-1build4 [51.1 kB] 2021-05-17T21:40:17.6850073Z Get:4 http://azure.archive.ubuntu.com/ubuntu focal/universe amd64 pandoc-citeproc amd64 0.15.0.1-1build4 [12.9 MB] 2021-05-17T21:40:18.4180678Z Fetched 13.7 MB in 0s (50.2 MB/s) 2021-05-17T21:40:18.4595446Z Selecting previously unselected package libbibutils6. 2021-05-17T21:40:18.4697442Z (Reading database ... 2021-05-17T21:40:18.4698063Z (Reading database ... 5% 2021-05-17T21:40:18.4698560Z (Reading database ... 10% 2021-05-17T21:40:18.4699040Z (Reading database ... 15% 2021-05-17T21:40:18.4699531Z (Reading database ... 20% 2021-05-17T21:40:18.4700658Z (Reading database ... 25% 2021-05-17T21:40:18.4701140Z (Reading database ... 30% 2021-05-17T21:40:18.4701805Z (Reading database ... 35% 2021-05-17T21:40:18.4702623Z (Reading database ... 40% 2021-05-17T21:40:18.4703146Z (Reading database ... 45% 2021-05-17T21:40:18.4705294Z (Reading database ... 50% 2021-05-17T21:40:18.4754582Z (Reading database ... 55% 2021-05-17T21:40:18.4809986Z (Reading database ... 60% 2021-05-17T21:40:18.4855837Z (Reading database ... 65% 2021-05-17T21:40:18.5046348Z (Reading database ... 70% 2021-05-17T21:40:18.5080222Z (Reading database ... 75% 2021-05-17T21:40:18.5361479Z (Reading database ... 80% 2021-05-17T21:40:18.5501216Z (Reading database ... 85% 2021-05-17T21:40:18.5965568Z (Reading database ... 90% 2021-05-17T21:40:18.6050789Z (Reading database ... 95% 2021-05-17T21:40:18.6051450Z (Reading database ... 100% 2021-05-17T21:40:18.6052155Z (Reading database ... 285139 files and directories currently installed.) 2021-05-17T21:40:18.6213872Z Preparing to unpack .../libbibutils6_6.2-1_amd64.deb ... 2021-05-17T21:40:18.6244416Z Unpacking libbibutils6 (6.2-1) ... 2021-05-17T21:40:18.7018159Z Selecting previously unselected package libcurl4-openssl-dev:amd64. 2021-05-17T21:40:18.7349522Z Preparing to unpack .../libcurl4-openssl-dev_7.68.0-1ubuntu2.5_amd64.deb ... 2021-05-17T21:40:18.7361139Z Unpacking libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T21:40:18.8065362Z Selecting previously unselected package libghc-pandoc-citeproc-data. 2021-05-17T21:40:18.8352755Z Preparing to unpack .../libghc-pandoc-citeproc-data_0.15.0.1-1build4_all.deb ... 2021-05-17T21:40:18.8366779Z Unpacking libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T21:40:18.8769149Z Selecting previously unselected package pandoc-citeproc. 2021-05-17T21:40:18.9103230Z Preparing to unpack .../pandoc-citeproc_0.15.0.1-1build4_amd64.deb ... 2021-05-17T21:40:18.9117903Z Unpacking pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T21:40:18.9149975Z Replaced by files in installed package pandoc (2.7.3-1) ... 2021-05-17T21:40:20.4285187Z Setting up libghc-pandoc-citeproc-data (0.15.0.1-1build4) ... 2021-05-17T21:40:20.4328367Z Setting up libbibutils6 (6.2-1) ... 2021-05-17T21:40:20.4378502Z Setting up libcurl4-openssl-dev:amd64 (7.68.0-1ubuntu2.5) ... 2021-05-17T21:40:20.4423919Z Setting up pandoc-citeproc (0.15.0.1-1build4) ... 2021-05-17T21:40:20.4470406Z Processing triggers for man-db (2.9.1-1) ... 2021-05-17T21:40:23.9259629Z Processing triggers for libc-bin (2.31-0ubuntu9.2) ... 2021-05-17T21:40:26.3004793Z ##[group]Run remotes::install_github("ropensci/tic") 2021-05-17T21:40:26.3005562Z remotes::install_github("ropensci/tic") 2021-05-17T21:40:26.3006399Z remotes::install_github("muschellij2/ghtravis") 2021-05-17T21:40:26.3007062Z remotes::install_github("muschellij2/aghast") 2021-05-17T21:40:26.3007648Z remotes::install_cran("covr") 2021-05-17T21:40:26.3016265Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:40:26.3016681Z env: 2021-05-17T21:40:26.3017111Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:40:26.3017602Z TIC_DEPLOY_KEY: 2021-05-17T21:40:26.3018356Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:40:26.3019923Z GITHUB_PAT: *** 2021-05-17T21:40:26.3020806Z COVERALLS_TOKEN: *** 2021-05-17T21:40:26.3021295Z continue-on-error: true 2021-05-17T21:40:26.3021751Z VDIFFR_RUN_TESTS: 2021-05-17T21:40:26.3022215Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:40:26.3023012Z TZ: UTC 2021-05-17T21:40:26.3023383Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:40:26.3023784Z NOT_CRAN: true 2021-05-17T21:40:26.3024325Z ##[endgroup] 2021-05-17T21:40:26.5238152Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:40:27.1549683Z Downloading GitHub repo ropensci/tic@HEAD 2021-05-17T21:40:46.8325255Z rlang (NA -> 0.4.11) [CRAN] 2021-05-17T21:40:46.8328809Z magrittr (NA -> 2.0.1 ) [CRAN] 2021-05-17T21:40:46.8329513Z glue (NA -> 1.4.2 ) [CRAN] 2021-05-17T21:40:46.8330078Z sys (NA -> 3.4 ) [CRAN] 2021-05-17T21:40:46.8330650Z askpass (NA -> 1.1 ) [CRAN] 2021-05-17T21:40:46.8331239Z openssl (NA -> 1.4.4 ) [CRAN] 2021-05-17T21:40:46.8331823Z mime (NA -> 0.10 ) [CRAN] 2021-05-17T21:40:46.8332371Z curl (NA -> 4.3.1 ) [CRAN] 2021-05-17T21:40:46.8332949Z jsonlite (NA -> 1.7.2 ) [CRAN] 2021-05-17T21:40:46.8333507Z ini (NA -> 0.3.1 ) [CRAN] 2021-05-17T21:40:46.8334060Z httr (NA -> 1.4.2 ) [CRAN] 2021-05-17T21:40:46.8334672Z gitcreds (NA -> 0.1.1 ) [CRAN] 2021-05-17T21:40:46.8335241Z cli (NA -> 2.5.0 ) [CRAN] 2021-05-17T21:40:46.8335798Z zip (NA -> 2.1.1 ) [CRAN] 2021-05-17T21:40:46.8336383Z rstudioapi (NA -> 0.13 ) [CRAN] 2021-05-17T21:40:46.8337004Z credentials (NA -> 1.3.0 ) [CRAN] 2021-05-17T21:40:46.8337604Z fastmap (NA -> 1.1.0 ) [CRAN] 2021-05-17T21:40:46.8338162Z yaml (NA -> 2.2.1 ) [CRAN] 2021-05-17T21:40:46.8338721Z withr (NA -> 2.4.2 ) [CRAN] 2021-05-17T21:40:46.8339295Z whisker (NA -> 0.4 ) [CRAN] 2021-05-17T21:40:46.8339871Z rappdirs (NA -> 0.3.3 ) [CRAN] 2021-05-17T21:40:46.8340792Z purrr (NA -> 0.3.4 ) [CRAN] 2021-05-17T21:40:46.8341365Z lifecycle (NA -> 1.0.0 ) [CRAN] 2021-05-17T21:40:46.8341944Z gh (NA -> 1.3.0 ) [CRAN] 2021-05-17T21:40:46.8342839Z gert (NA -> 1.3.0 ) [CRAN] 2021-05-17T21:40:46.8343393Z fs (NA -> 1.5.0 ) [CRAN] 2021-05-17T21:40:46.8344094Z clipr (NA -> 0.7.1 ) [CRAN] 2021-05-17T21:40:46.8344645Z cachem (NA -> 1.0.5 ) [CRAN] 2021-05-17T21:40:46.8345211Z usethis (NA -> 2.0.1 ) [CRAN] 2021-05-17T21:40:46.8345778Z memoise (NA -> 2.0.0 ) [CRAN] 2021-05-17T21:40:46.8347387Z git2r (NA -> 0.28.0) [CRAN] 2021-05-17T21:40:46.8348956Z Installing 31 packages: rlang, magrittr, glue, sys, askpass, openssl, mime, curl, jsonlite, ini, httr, gitcreds, cli, zip, rstudioapi, credentials, fastmap, yaml, withr, whisker, rappdirs, purrr, lifecycle, gh, gert, fs, clipr, cachem, usethis, memoise, git2r 2021-05-17T21:40:46.8361870Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:40:46.8362629Z (as ‘lib’ is unspecified) 2021-05-17T21:41:04.3537915Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rlang_0.4.11.tar.gz' 2021-05-17T21:41:05.0402366Z Content type 'binary/octet-stream' length 859995 bytes (839 KB) 2021-05-17T21:41:05.0641169Z ================================================== 2021-05-17T21:41:05.0642190Z downloaded 839 KB 2021-05-17T21:41:05.0643130Z 2021-05-17T21:41:05.0686240Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/magrittr_2.0.1.tar.gz' 2021-05-17T21:41:05.7729050Z Content type 'binary/octet-stream' length 264532 bytes (258 KB) 2021-05-17T21:41:05.7931298Z ================================================== 2021-05-17T21:41:05.7931928Z downloaded 258 KB 2021-05-17T21:41:05.7932235Z 2021-05-17T21:41:05.7974565Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/glue_1.4.2.tar.gz' 2021-05-17T21:41:06.4874111Z Content type 'binary/octet-stream' length 100043 bytes (97 KB) 2021-05-17T21:41:06.4941763Z ================================================== 2021-05-17T21:41:06.4942493Z downloaded 97 KB 2021-05-17T21:41:06.4942931Z 2021-05-17T21:41:06.4984377Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sys_3.4.tar.gz' 2021-05-17T21:41:07.0618759Z Content type 'binary/octet-stream' length 20291 bytes (19 KB) 2021-05-17T21:41:07.0619485Z ================================================== 2021-05-17T21:41:07.0620288Z downloaded 19 KB 2021-05-17T21:41:07.0620637Z 2021-05-17T21:41:07.0665811Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/askpass_1.1.tar.gz' 2021-05-17T21:41:07.7427582Z Content type 'application/x-tar' length 5688 bytes 2021-05-17T21:41:07.7430005Z ================================================== 2021-05-17T21:41:07.7430493Z downloaded 5688 bytes 2021-05-17T21:41:07.7430771Z 2021-05-17T21:41:07.7468085Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/openssl_1.4.4.tar.gz' 2021-05-17T21:41:08.2729038Z Content type 'binary/octet-stream' length 1311683 bytes (1.3 MB) 2021-05-17T21:41:08.2997174Z ================================================== 2021-05-17T21:41:09.1224708Z downloaded 1.3 MB 2021-05-17T21:41:09.1226463Z 2021-05-17T21:41:09.1228773Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/mime_0.10.tar.gz' 2021-05-17T21:41:09.1231318Z Content type 'binary/octet-stream' length 12958 bytes (12 KB) 2021-05-17T21:41:09.1232048Z ================================================== 2021-05-17T21:41:09.1232587Z downloaded 12 KB 2021-05-17T21:41:09.1233020Z 2021-05-17T21:41:09.1234854Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/curl_4.3.1.tar.gz' 2021-05-17T21:41:09.5171816Z Content type 'binary/octet-stream' length 798588 bytes (779 KB) 2021-05-17T21:41:09.6404072Z ================================================== 2021-05-17T21:41:09.6404632Z downloaded 779 KB 2021-05-17T21:41:09.6404917Z 2021-05-17T21:41:09.6446644Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/jsonlite_1.7.2.tar.gz' 2021-05-17T21:41:10.1701948Z Content type 'binary/octet-stream' length 422264 bytes (412 KB) 2021-05-17T21:41:10.1903498Z ================================================== 2021-05-17T21:41:10.1904228Z downloaded 412 KB 2021-05-17T21:41:10.1904556Z 2021-05-17T21:41:10.2018110Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ini_0.3.1.tar.gz' 2021-05-17T21:41:10.9044687Z Content type 'application/x-tar' length 3475 bytes 2021-05-17T21:41:10.9045947Z ================================================== 2021-05-17T21:41:10.9046694Z downloaded 3475 bytes 2021-05-17T21:41:10.9047207Z 2021-05-17T21:41:10.9082750Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/httr_1.4.2.tar.gz' 2021-05-17T21:41:11.4286173Z Content type 'binary/octet-stream' length 159877 bytes (156 KB) 2021-05-17T21:41:11.4392024Z ================================================== 2021-05-17T21:41:11.4392994Z downloaded 156 KB 2021-05-17T21:41:11.4393554Z 2021-05-17T21:41:11.4434058Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gitcreds_0.1.1.tar.gz' 2021-05-17T21:41:12.1423745Z Content type 'binary/octet-stream' length 62129 bytes (60 KB) 2021-05-17T21:41:12.1472931Z ================================================== 2021-05-17T21:41:12.1473807Z downloaded 60 KB 2021-05-17T21:41:12.1474335Z 2021-05-17T21:41:12.1516162Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cli_2.5.0.tar.gz' 2021-05-17T21:41:12.6800268Z Content type 'binary/octet-stream' length 158132 bytes (154 KB) 2021-05-17T21:41:12.6910359Z ================================================== 2021-05-17T21:41:12.6911097Z downloaded 154 KB 2021-05-17T21:41:12.6911613Z 2021-05-17T21:41:12.6952747Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/zip_2.1.1.tar.gz' 2021-05-17T21:41:13.2123657Z Content type 'binary/octet-stream' length 113091 bytes (110 KB) 2021-05-17T21:41:13.2219813Z ================================================== 2021-05-17T21:41:13.2220345Z downloaded 110 KB 2021-05-17T21:41:13.2220623Z 2021-05-17T21:41:13.2262434Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rstudioapi_0.13.tar.gz' 2021-05-17T21:41:14.0292386Z Content type 'binary/octet-stream' length 109870 bytes (107 KB) 2021-05-17T21:41:14.0349348Z ================================================== 2021-05-17T21:41:14.0349887Z downloaded 107 KB 2021-05-17T21:41:14.0350176Z 2021-05-17T21:41:14.0400873Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/credentials_1.3.0.tar.gz' 2021-05-17T21:41:14.7488328Z Content type 'binary/octet-stream' length 230676 bytes (225 KB) 2021-05-17T21:41:14.7633018Z ================================================== 2021-05-17T21:41:14.7633574Z downloaded 225 KB 2021-05-17T21:41:14.7634333Z 2021-05-17T21:41:14.7677895Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fastmap_1.1.0.tar.gz' 2021-05-17T21:41:15.4472170Z Content type 'binary/octet-stream' length 44517 bytes (43 KB) 2021-05-17T21:41:15.4518329Z ================================================== 2021-05-17T21:41:15.4518815Z downloaded 43 KB 2021-05-17T21:41:15.4519123Z 2021-05-17T21:41:15.4556192Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/yaml_2.2.1.tar.gz' 2021-05-17T21:41:16.1516834Z Content type 'binary/octet-stream' length 92979 bytes (90 KB) 2021-05-17T21:41:16.1598757Z ================================================== 2021-05-17T21:41:16.1599699Z downloaded 90 KB 2021-05-17T21:41:16.1600346Z 2021-05-17T21:41:16.1630272Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/withr_2.4.2.tar.gz' 2021-05-17T21:41:16.6678247Z Content type 'binary/octet-stream' length 95150 bytes (92 KB) 2021-05-17T21:41:16.6761385Z ================================================== 2021-05-17T21:41:16.6762160Z downloaded 92 KB 2021-05-17T21:41:16.6762600Z 2021-05-17T21:41:16.6809545Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/whisker_0.4.tar.gz' 2021-05-17T21:41:17.1886535Z Content type 'application/x-tar' length 28675 bytes (28 KB) 2021-05-17T21:41:17.1891557Z ================================================== 2021-05-17T21:41:17.1893534Z downloaded 28 KB 2021-05-17T21:41:17.1893861Z 2021-05-17T21:41:17.1932648Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rappdirs_0.3.3.tar.gz' 2021-05-17T21:41:17.7481583Z Content type 'binary/octet-stream' length 12326 bytes (12 KB) 2021-05-17T21:41:17.7482304Z ================================================== 2021-05-17T21:41:17.7482716Z downloaded 12 KB 2021-05-17T21:41:17.7482975Z 2021-05-17T21:41:17.7528784Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/purrr_0.3.4.tar.gz' 2021-05-17T21:41:18.2619162Z Content type 'binary/octet-stream' length 373001 bytes (364 KB) 2021-05-17T21:41:18.2796741Z ================================================== 2021-05-17T21:41:18.2797748Z downloaded 364 KB 2021-05-17T21:41:18.2798276Z 2021-05-17T21:41:18.2848230Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lifecycle_1.0.0.tar.gz' 2021-05-17T21:41:18.9630107Z Content type 'binary/octet-stream' length 83493 bytes (81 KB) 2021-05-17T21:41:18.9683083Z ================================================== 2021-05-17T21:41:18.9684430Z downloaded 81 KB 2021-05-17T21:41:18.9684940Z 2021-05-17T21:41:18.9726018Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gh_1.3.0.tar.gz' 2021-05-17T21:41:19.6735051Z Content type 'binary/octet-stream' length 45853 bytes (44 KB) 2021-05-17T21:41:19.6784485Z ================================================== 2021-05-17T21:41:19.6785447Z downloaded 44 KB 2021-05-17T21:41:19.6786010Z 2021-05-17T21:41:19.6835678Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/gert_1.3.0.tar.gz' 2021-05-17T21:41:20.5505075Z Content type 'binary/octet-stream' length 66528 bytes (64 KB) 2021-05-17T21:41:20.5559276Z ================================================== 2021-05-17T21:41:20.5560153Z downloaded 64 KB 2021-05-17T21:41:20.5560689Z 2021-05-17T21:41:20.5600572Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fs_1.5.0.tar.gz' 2021-05-17T21:41:20.9882494Z Content type 'binary/octet-stream' length 800044 bytes (781 KB) 2021-05-17T21:41:21.0105006Z ================================================== 2021-05-17T21:41:21.0105667Z downloaded 781 KB 2021-05-17T21:41:21.0105950Z 2021-05-17T21:41:21.0145351Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/clipr_0.7.1.tar.gz' 2021-05-17T21:41:21.5485011Z Content type 'binary/octet-stream' length 20919 bytes (20 KB) 2021-05-17T21:41:21.5486399Z ================================================== 2021-05-17T21:41:21.5486954Z downloaded 20 KB 2021-05-17T21:41:21.5487504Z 2021-05-17T21:41:21.5520922Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cachem_1.0.5.tar.gz' 2021-05-17T21:41:22.0675494Z Content type 'binary/octet-stream' length 24954 bytes (24 KB) 2021-05-17T21:41:22.0678010Z ================================================== 2021-05-17T21:41:22.0678724Z downloaded 24 KB 2021-05-17T21:41:22.0679173Z 2021-05-17T21:41:22.0723804Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/usethis_2.0.1.tar.gz' 2021-05-17T21:41:22.7621541Z Content type 'binary/octet-stream' length 304209 bytes (297 KB) 2021-05-17T21:41:22.7768967Z ================================================== 2021-05-17T21:41:22.7769456Z downloaded 297 KB 2021-05-17T21:41:22.7769727Z 2021-05-17T21:41:22.7808805Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/memoise_2.0.0.tar.gz' 2021-05-17T21:41:23.4815646Z Content type 'binary/octet-stream' length 17411 bytes (17 KB) 2021-05-17T21:41:23.4818686Z ================================================== 2021-05-17T21:41:23.4819201Z downloaded 17 KB 2021-05-17T21:41:23.4819494Z 2021-05-17T21:41:23.4862016Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/git2r_0.28.0.tar.gz' 2021-05-17T21:41:24.1168281Z Content type 'binary/octet-stream' length 1223574 bytes (1.2 MB) 2021-05-17T21:41:24.2675153Z ================================================== 2021-05-17T21:41:24.2676522Z downloaded 1.2 MB 2021-05-17T21:41:24.2677614Z 2021-05-17T21:41:24.9479372Z * installing *source* package ‘rlang’ ... 2021-05-17T21:41:24.9638562Z ** package ‘rlang’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:24.9642631Z ** using staged installation 2021-05-17T21:41:24.9888884Z ** libs 2021-05-17T21:41:24.9957686Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c capture.c -o capture.o 2021-05-17T21:41:25.1144050Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c export.c -o export.o 2021-05-17T21:41:25.4954891Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c internal.c -o internal.o 2021-05-17T21:41:28.1655479Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c lib.c -o lib.o 2021-05-17T21:41:29.3106721Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./lib/ -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:41:29.3586224Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rlang.so capture.o export.o internal.o lib.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:29.4104585Z installing to /home/runner/work/_temp/Library/00LOCK-rlang/00new/rlang/libs 2021-05-17T21:41:29.4138837Z ** R 2021-05-17T21:41:29.4652845Z ** inst 2021-05-17T21:41:29.4664532Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:33.8241703Z ** help 2021-05-17T21:41:34.6572136Z *** installing help indices 2021-05-17T21:41:35.0052944Z *** copying figures 2021-05-17T21:41:35.0060224Z ** building package indices 2021-05-17T21:41:35.5804126Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:35.8245960Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:35.8481144Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:36.1464092Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:36.1464819Z * DONE (rlang) 2021-05-17T21:41:36.4448456Z * installing *source* package ‘magrittr’ ... 2021-05-17T21:41:36.4477946Z ** package ‘magrittr’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:36.4479781Z ** using staged installation 2021-05-17T21:41:36.4633093Z ** libs 2021-05-17T21:41:36.4684092Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pipe.c -o pipe.o 2021-05-17T21:41:36.6084260Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:41:36.6699069Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o magrittr.so pipe.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:36.6945109Z installing to /home/runner/work/_temp/Library/00LOCK-magrittr/00new/magrittr/libs 2021-05-17T21:41:36.6947799Z ** R 2021-05-17T21:41:36.6990290Z ** inst 2021-05-17T21:41:36.7007499Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:37.0190806Z ** help 2021-05-17T21:41:37.0647549Z *** installing help indices 2021-05-17T21:41:37.1008536Z *** copying figures 2021-05-17T21:41:37.1011752Z ** building package indices 2021-05-17T21:41:37.3426221Z ** installing vignettes 2021-05-17T21:41:37.3493491Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:37.5458175Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:37.5638672Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:37.7545155Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:37.7553458Z * DONE (magrittr) 2021-05-17T21:41:38.0609032Z * installing *source* package ‘glue’ ... 2021-05-17T21:41:38.0630343Z ** package ‘glue’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:38.0631470Z ** using staged installation 2021-05-17T21:41:38.0872867Z ** libs 2021-05-17T21:41:38.0923799Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c glue.c -o glue.o 2021-05-17T21:41:38.2316072Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:38.2877480Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c trim.c -o trim.o 2021-05-17T21:41:38.3883631Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o glue.so glue.o init.o trim.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:38.4144718Z installing to /home/runner/work/_temp/Library/00LOCK-glue/00new/glue/libs 2021-05-17T21:41:38.4146323Z ** R 2021-05-17T21:41:38.4211739Z ** inst 2021-05-17T21:41:38.4229148Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:39.0287707Z ** help 2021-05-17T21:41:39.0630525Z *** installing help indices 2021-05-17T21:41:39.0987441Z *** copying figures 2021-05-17T21:41:39.0990736Z ** building package indices 2021-05-17T21:41:39.3237018Z ** installing vignettes 2021-05-17T21:41:39.3301904Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:39.5801658Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:39.6009992Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:39.8694421Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:39.8704418Z * DONE (glue) 2021-05-17T21:41:40.1134372Z * installing *source* package ‘sys’ ... 2021-05-17T21:41:40.1153934Z ** package ‘sys’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:40.1155835Z ** using staged installation 2021-05-17T21:41:40.1377355Z ** libs 2021-05-17T21:41:40.1423942Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c exec.c -o exec.o 2021-05-17T21:41:40.3965588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:40.4484684Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o sys.so exec.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:40.4744109Z installing to /home/runner/work/_temp/Library/00LOCK-sys/00new/sys/libs 2021-05-17T21:41:40.4745274Z ** R 2021-05-17T21:41:40.4777844Z ** inst 2021-05-17T21:41:40.4788612Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:40.8092918Z ** help 2021-05-17T21:41:40.8349626Z *** installing help indices 2021-05-17T21:41:40.8585803Z ** building package indices 2021-05-17T21:41:41.0931087Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:41.3047302Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:41.3255708Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:41.5261257Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:41.5267617Z * DONE (sys) 2021-05-17T21:41:41.7546937Z * installing *source* package ‘mime’ ... 2021-05-17T21:41:41.7557758Z ** package ‘mime’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:41.7559129Z ** using staged installation 2021-05-17T21:41:41.7700254Z ** libs 2021-05-17T21:41:41.7754974Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:41.8294176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rawmatch.c -o rawmatch.o 2021-05-17T21:41:41.8920051Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mime.so init.o rawmatch.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:41.9083208Z installing to /home/runner/work/_temp/Library/00LOCK-mime/00new/mime/libs 2021-05-17T21:41:41.9099191Z ** R 2021-05-17T21:41:41.9163269Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:42.2961865Z ** help 2021-05-17T21:41:42.3189941Z *** installing help indices 2021-05-17T21:41:42.3381139Z ** building package indices 2021-05-17T21:41:42.5586557Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:42.7634015Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:42.7821964Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:42.9803428Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:42.9810024Z * DONE (mime) 2021-05-17T21:41:43.4104975Z * installing *source* package ‘curl’ ... 2021-05-17T21:41:43.4196993Z ** package ‘curl’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:43.4198181Z ** using staged installation 2021-05-17T21:41:43.4300777Z Found pkg-config cflags and libs! 2021-05-17T21:41:43.5222985Z Using PKG_CFLAGS=-I/usr/include/x86_64-linux-gnu 2021-05-17T21:41:43.5224279Z Using PKG_LIBS=-lcurl 2021-05-17T21:41:43.5833376Z ** libs 2021-05-17T21:41:43.5892337Z rm -f curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o 2021-05-17T21:41:43.5922853Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callbacks.c -o callbacks.o 2021-05-17T21:41:43.6886844Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c curl.c -o curl.o 2021-05-17T21:41:43.8295288Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c download.c -o download.o 2021-05-17T21:41:43.9290873Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape.c -o escape.o 2021-05-17T21:41:43.9930769Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fetch.c -o fetch.o 2021-05-17T21:41:44.1237083Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c form.c -o form.o 2021-05-17T21:41:44.2175263Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c getdate.c -o getdate.o 2021-05-17T21:41:44.2858284Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c handle.c -o handle.o 2021-05-17T21:41:44.6820228Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ieproxy.c -o ieproxy.o 2021-05-17T21:41:44.7309851Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:41:44.8038949Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c interrupt.c -o interrupt.o 2021-05-17T21:41:44.8894596Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c multi.c -o multi.o 2021-05-17T21:41:45.1044597Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c nslookup.c -o nslookup.o 2021-05-17T21:41:45.1740716Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c reflist.c -o reflist.o 2021-05-17T21:41:45.2403128Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T21:41:45.2908941Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T21:41:45.3426578Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typechecking.c -o typechecking.o 2021-05-17T21:41:45.4049724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:41:45.5527897Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:41:45.6303020Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c winidn.c -o winidn.o 2021-05-17T21:41:45.6507361Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/include/x86_64-linux-gnu -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T21:41:45.7121043Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o curl.so callbacks.o curl.o download.o escape.o fetch.o form.o getdate.o handle.o ieproxy.o init.o interrupt.o multi.o nslookup.o reflist.o split.o ssl.o typechecking.o utils.o version.o winidn.o writer.o -lcurl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:45.7439957Z installing to /home/runner/work/_temp/Library/00LOCK-curl/00new/curl/libs 2021-05-17T21:41:45.7455402Z ** R 2021-05-17T21:41:45.7602917Z ** inst 2021-05-17T21:41:45.7653692Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:46.3797376Z ** help 2021-05-17T21:41:46.4305993Z *** installing help indices 2021-05-17T21:41:46.4692307Z ** building package indices 2021-05-17T21:41:46.7156388Z ** installing vignettes 2021-05-17T21:41:46.7259897Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:46.9408114Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:46.9594393Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:47.1801799Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:47.1812618Z * DONE (curl) 2021-05-17T21:41:47.5654612Z * installing *source* package ‘jsonlite’ ... 2021-05-17T21:41:47.5714825Z ** package ‘jsonlite’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:47.5717322Z ** using staged installation 2021-05-17T21:41:47.5885083Z ** libs 2021-05-17T21:41:47.5944833Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:41:47.6741883Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_array.c -o collapse_array.o 2021-05-17T21:41:47.7408287Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_object.c -o collapse_object.o 2021-05-17T21:41:47.8179055Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c collapse_pretty.c -o collapse_pretty.o 2021-05-17T21:41:47.9459554Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c escape_chars.c -o escape_chars.o 2021-05-17T21:41:48.0285234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c integer64_to_na.c -o integer64_to_na.o 2021-05-17T21:41:48.0858470Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_datelist.c -o is_datelist.o 2021-05-17T21:41:48.1372034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_recordlist.c -o is_recordlist.o 2021-05-17T21:41:48.1983172Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c is_scalarlist.c -o is_scalarlist.o 2021-05-17T21:41:48.2549591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c modp_numtoa.c -o modp_numtoa.o 2021-05-17T21:41:48.4017242Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c null_to_na.c -o null_to_na.o 2021-05-17T21:41:48.4871964Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c num_to_char.c -o num_to_char.o 2021-05-17T21:41:48.5873374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c parse.c -o parse.o 2021-05-17T21:41:48.6665721Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c prettify.c -o prettify.o 2021-05-17T21:41:48.7467690Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c push_parser.c -o push_parser.o 2021-05-17T21:41:48.8115371Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c r-base64.c -o r-base64.o 2021-05-17T21:41:48.8699617Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c register.c -o register.o 2021-05-17T21:41:48.9272471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c row_collapse.c -o row_collapse.o 2021-05-17T21:41:49.0069989Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c transpose_list.c -o transpose_list.o 2021-05-17T21:41:49.0673855Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c validate.c -o validate.o 2021-05-17T21:41:49.1233458Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl.c -o yajl/yajl.o 2021-05-17T21:41:49.1918295Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_alloc.c -o yajl/yajl_alloc.o 2021-05-17T21:41:49.2259954Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_buf.c -o yajl/yajl_buf.o 2021-05-17T21:41:49.2774149Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_encode.c -o yajl/yajl_encode.o 2021-05-17T21:41:49.3963501Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_gen.c -o yajl/yajl_gen.o 2021-05-17T21:41:49.6698847Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_lex.c -o yajl/yajl_lex.o 2021-05-17T21:41:49.9792366Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_parser.c -o yajl/yajl_parser.o 2021-05-17T21:41:50.1725034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Iyajl/api -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c yajl/yajl_tree.c -o yajl/yajl_tree.o 2021-05-17T21:41:50.3354224Z ar rcs yajl/libstatyajl.a yajl/yajl.o yajl/yajl_alloc.o yajl/yajl_buf.o yajl/yajl_encode.o yajl/yajl_gen.o yajl/yajl_lex.o yajl/yajl_parser.o yajl/yajl_tree.o 2021-05-17T21:41:50.3439672Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o jsonlite.so base64.o collapse_array.o collapse_object.o collapse_pretty.o escape_chars.o integer64_to_na.o is_datelist.o is_recordlist.o is_scalarlist.o modp_numtoa.o null_to_na.o num_to_char.o parse.o prettify.o push_parser.o r-base64.o register.o row_collapse.o transpose_list.o validate.o -Lyajl -lstatyajl -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:41:50.3824357Z installing to /home/runner/work/_temp/Library/00LOCK-jsonlite/00new/jsonlite/libs 2021-05-17T21:41:50.3844806Z ** R 2021-05-17T21:41:50.4063555Z ** inst 2021-05-17T21:41:50.4084777Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:51.7445511Z in method for ‘asJSON’ with signature ‘"blob"’: no definition for class “blob” 2021-05-17T21:41:51.7448005Z ** help 2021-05-17T21:41:51.7799695Z *** installing help indices 2021-05-17T21:41:51.8100986Z ** building package indices 2021-05-17T21:41:52.0486553Z ** installing vignettes 2021-05-17T21:41:52.0563320Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:52.2876292Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:41:52.3108775Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:52.5547983Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:52.5562786Z * DONE (jsonlite) 2021-05-17T21:41:52.7990298Z * installing *source* package ‘ini’ ... 2021-05-17T21:41:52.7998957Z ** package ‘ini’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:52.8000012Z ** using staged installation 2021-05-17T21:41:52.8135635Z ** R 2021-05-17T21:41:52.8167810Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:53.0943460Z ** help 2021-05-17T21:41:53.1083124Z *** installing help indices 2021-05-17T21:41:53.1363591Z ** building package indices 2021-05-17T21:41:53.3695397Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:53.5825992Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:53.8170138Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:53.8175984Z * DONE (ini) 2021-05-17T21:41:54.0886689Z * installing *source* package ‘gitcreds’ ... 2021-05-17T21:41:54.0905354Z ** package ‘gitcreds’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:54.0906517Z ** using staged installation 2021-05-17T21:41:54.1035725Z ** R 2021-05-17T21:41:54.1103722Z ** inst 2021-05-17T21:41:54.1117029Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:41:54.7234723Z ** help 2021-05-17T21:41:54.7520009Z *** installing help indices 2021-05-17T21:41:54.7782695Z ** building package indices 2021-05-17T21:41:54.9983413Z ** installing vignettes 2021-05-17T21:41:55.0028396Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:41:55.2000359Z ** testing if installed package can be loaded from final location 2021-05-17T21:41:55.4071262Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:41:55.4080816Z * DONE (gitcreds) 2021-05-17T21:41:55.6872370Z * installing *source* package ‘zip’ ... 2021-05-17T21:41:55.6898188Z ** package ‘zip’ successfully unpacked and MD5 sums checked 2021-05-17T21:41:55.6899194Z ** using staged installation 2021-05-17T21:41:55.7017778Z ** libs 2021-05-17T21:41:55.7068100Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip 2021-05-17T21:41:58.8767219Z gcc -g -O2 miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip 2021-05-17T21:42:01.9688040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:02.0189367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c miniz.c -o miniz.o 2021-05-17T21:42:04.8957981Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rzip.c -o rzip.o 2021-05-17T21:42:05.0004123Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c zip.c -o zip.o 2021-05-17T21:42:05.1538393Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unixutils.c -o unixutils.o 2021-05-17T21:42:05.2284958Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:05.2572333Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-zip/00new/zip 2021-05-17T21:42:05.2627725Z ** R 2021-05-17T21:42:05.2678803Z ** inst 2021-05-17T21:42:05.2692258Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:05.6705668Z ** help 2021-05-17T21:42:05.6953013Z *** installing help indices 2021-05-17T21:42:05.7240986Z ** building package indices 2021-05-17T21:42:05.9491940Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:06.1729349Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:06.1941755Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:06.3976059Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:06.3983453Z * DONE (zip) 2021-05-17T21:42:06.7583481Z * installing *source* package ‘rstudioapi’ ... 2021-05-17T21:42:06.7630264Z ** package ‘rstudioapi’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:06.7631588Z ** using staged installation 2021-05-17T21:42:06.7800752Z ** R 2021-05-17T21:42:06.7934300Z ** inst 2021-05-17T21:42:06.7956241Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:07.4476656Z ** help 2021-05-17T21:42:07.6465750Z *** installing help indices 2021-05-17T21:42:07.7979476Z *** copying figures 2021-05-17T21:42:07.7983361Z ** building package indices 2021-05-17T21:42:08.1390406Z ** installing vignettes 2021-05-17T21:42:08.1477817Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:08.3486652Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:08.5597552Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:08.5665146Z * DONE (rstudioapi) 2021-05-17T21:42:08.8268398Z * installing *source* package ‘fastmap’ ... 2021-05-17T21:42:08.8286483Z ** package ‘fastmap’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:08.8287613Z ** using staged installation 2021-05-17T21:42:08.8484548Z ** libs 2021-05-17T21:42:08.8549005Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -DR_NO_REMAP -fpic -g -O2 -c fastmap.cpp -o fastmap.o 2021-05-17T21:42:11.1672058Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Ilib/ -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:11.2197308Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fastmap.so fastmap.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:11.2875727Z installing to /home/runner/work/_temp/Library/00LOCK-fastmap/00new/fastmap/libs 2021-05-17T21:42:11.2898632Z ** R 2021-05-17T21:42:11.2952146Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:11.8171034Z ** help 2021-05-17T21:42:11.8376226Z *** installing help indices 2021-05-17T21:42:11.8602475Z ** building package indices 2021-05-17T21:42:12.0747601Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:12.2837645Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:12.3027545Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:12.5077662Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:12.5085797Z * DONE (fastmap) 2021-05-17T21:42:12.7906137Z * installing *source* package ‘yaml’ ... 2021-05-17T21:42:12.7930697Z ** package ‘yaml’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:12.7931765Z ** using staged installation 2021-05-17T21:42:12.8044355Z ** libs 2021-05-17T21:42:12.8102138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api.c -o api.o 2021-05-17T21:42:13.2151285Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dumper.c -o dumper.o 2021-05-17T21:42:13.3445001Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c emitter.c -o emitter.o 2021-05-17T21:42:14.4296896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c implicit.c -o implicit.o 2021-05-17T21:42:14.6299638Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c loader.c -o loader.o 2021-05-17T21:42:14.7863384Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c parser.c -o parser.o 2021-05-17T21:42:15.1960588Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_emit.c -o r_emit.o 2021-05-17T21:42:15.5323263Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_ext.c -o r_ext.o 2021-05-17T21:42:15.6550938Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c r_parse.c -o r_parse.o 2021-05-17T21:42:16.1351674Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reader.c -o reader.o 2021-05-17T21:42:16.2610342Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c scanner.c -o scanner.o 2021-05-17T21:42:17.7915133Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -DNDEBUG -I/usr/local/include -fpic -g -O2 -c writer.c -o writer.o 2021-05-17T21:42:17.8621954Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o yaml.so api.o dumper.o emitter.o implicit.o loader.o parser.o r_emit.o r_ext.o r_parse.o reader.o scanner.o writer.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:17.8953947Z installing to /home/runner/work/_temp/Library/00LOCK-yaml/00new/yaml/libs 2021-05-17T21:42:17.8980170Z ** R 2021-05-17T21:42:17.9018515Z ** inst 2021-05-17T21:42:17.9036291Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:18.2103881Z ** help 2021-05-17T21:42:18.2362021Z *** installing help indices 2021-05-17T21:42:18.2656129Z ** building package indices 2021-05-17T21:42:18.4804714Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:18.6812002Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:18.7006197Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:18.9025842Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:18.9032072Z * DONE (yaml) 2021-05-17T21:42:19.2119027Z * installing *source* package ‘withr’ ... 2021-05-17T21:42:19.2148068Z ** package ‘withr’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:19.2148870Z ** using staged installation 2021-05-17T21:42:19.2348878Z ** R 2021-05-17T21:42:19.2449835Z ** inst 2021-05-17T21:42:19.2481528Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:20.0527458Z ** help 2021-05-17T21:42:20.1445762Z *** installing help indices 2021-05-17T21:42:20.2131479Z *** copying figures 2021-05-17T21:42:20.2135321Z ** building package indices 2021-05-17T21:42:20.4823487Z ** installing vignettes 2021-05-17T21:42:20.4880991Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:20.6839327Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:20.8868945Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:20.8877390Z * DONE (withr) 2021-05-17T21:42:21.1536331Z * installing *source* package ‘whisker’ ... 2021-05-17T21:42:21.1556567Z ** package ‘whisker’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:21.1557683Z ** using staged installation 2021-05-17T21:42:21.1667434Z ** R 2021-05-17T21:42:21.1714134Z ** inst 2021-05-17T21:42:21.1734948Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:21.6743503Z ** help 2021-05-17T21:42:21.7002065Z *** installing help indices 2021-05-17T21:42:21.7279920Z ** building package indices 2021-05-17T21:42:21.9494126Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:22.1556228Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:22.3488667Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:22.3496104Z * DONE (whisker) 2021-05-17T21:42:22.5859457Z * installing *source* package ‘rappdirs’ ... 2021-05-17T21:42:22.5872783Z ** package ‘rappdirs’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:22.5873915Z ** using staged installation 2021-05-17T21:42:22.6133980Z ** libs 2021-05-17T21:42:22.6184486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:42:22.6710639Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c win-path.c -o win-path.o 2021-05-17T21:42:22.7211715Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o rappdirs.so init.o win-path.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:42:22.7362125Z installing to /home/runner/work/_temp/Library/00LOCK-rappdirs/00new/rappdirs/libs 2021-05-17T21:42:22.7375513Z ** R 2021-05-17T21:42:22.7422200Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:42:23.0818141Z ** help 2021-05-17T21:42:23.1104743Z *** installing help indices 2021-05-17T21:42:23.1367176Z ** building package indices 2021-05-17T21:42:23.3530756Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:42:23.5713114Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:42:23.5907887Z ** testing if installed package can be loaded from final location 2021-05-17T21:42:23.7897134Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:42:23.7904808Z * DONE (rappdirs) 2021-05-17T21:42:24.3665352Z * installing *source* package ‘fs’ ... 2021-05-17T21:42:24.3805772Z ** package ‘fs’ successfully unpacked and MD5 sums checked 2021-05-17T21:42:24.3806904Z ** using staged installation 2021-05-17T21:42:24.3985167Z ** libs 2021-05-17T21:42:24.4050614Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c id.cc -o id.o 2021-05-17T21:42:25.0451548Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c file.cc -o file.o 2021-05-17T21:42:25.5400987Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c path.cc -o path.o 2021-05-17T21:42:26.0051016Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c fs.cc -o fs.o 2021-05-17T21:42:26.1111420Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c link.cc -o link.o 2021-05-17T21:42:26.4830650Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c utils.cc -o utils.o 2021-05-17T21:42:26.8376591Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c init.cc -o init.o 2021-05-17T21:42:26.9388584Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c dir.cc -o dir.o 2021-05-17T21:42:27.4583209Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c getmode.cc -o getmode.o 2021-05-17T21:42:27.8108944Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c error.cc -o error.o 2021-05-17T21:42:27.9277415Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c unix/getmode.cc -o unix/getmode.o 2021-05-17T21:42:28.3054129Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/setmode.c -o bsd/setmode.o 2021-05-17T21:42:28.4635378Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/strmode.c -o bsd/strmode.o 2021-05-17T21:42:28.5138449Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I./libuv-1.38.1/include -I. -pthread -I/usr/local/include -fpic -g -O2 -c bsd/reallocarray.c -o bsd/reallocarray.o 2021-05-17T21:42:28.5495246Z (cd libuv-1.38.1 \ 2021-05-17T21:42:28.5497762Z && CC="gcc" CFLAGS="-g -O2 -I/usr/local/include -fpic -fvisibility=hidden" AR="ar" RANLIB="ranlib" LDFLAGS="-L/usr/local/lib" ./configure --quiet) 2021-05-17T21:42:33.8160639Z make --directory=libuv-1.38.1 \ 2021-05-17T21:42:33.8161649Z HAVE_DTRACE=0 2021-05-17T21:42:33.8279067Z make[1]: Entering directory '/tmp/Rtmpxz7fs6/R.INSTALL791651b26c51/fs/src/libuv-1.38.1' 2021-05-17T21:42:33.8375719Z CC src/libuv_la-fs-poll.lo 2021-05-17T21:42:34.5293016Z CC src/libuv_la-idna.lo 2021-05-17T21:42:35.2203648Z CC src/libuv_la-inet.lo 2021-05-17T21:42:35.9420614Z CC src/libuv_la-random.lo 2021-05-17T21:42:36.5494421Z CC src/libuv_la-strscpy.lo 2021-05-17T21:42:37.0793623Z CC src/libuv_la-threadpool.lo 2021-05-17T21:42:37.8052585Z CC src/libuv_la-timer.lo 2021-05-17T21:42:38.4861261Z CC src/libuv_la-uv-data-getter-setters.lo 2021-05-17T21:42:39.0900350Z CC src/libuv_la-uv-common.lo 2021-05-17T21:42:40.3430096Z CC src/libuv_la-version.lo 2021-05-17T21:42:40.8719120Z CC src/unix/libuv_la-async.lo 2021-05-17T21:42:41.5435305Z CC src/unix/libuv_la-core.lo 2021-05-17T21:42:42.8689971Z CC src/unix/libuv_la-dl.lo 2021-05-17T21:42:43.4502490Z CC src/unix/libuv_la-fs.lo 2021-05-17T21:42:45.2662894Z CC src/unix/libuv_la-getaddrinfo.lo 2021-05-17T21:42:45.9244708Z CC src/unix/libuv_la-getnameinfo.lo 2021-05-17T21:42:46.5150777Z CC src/unix/libuv_la-loop-watcher.lo 2021-05-17T21:42:47.2008010Z CC src/unix/libuv_la-loop.lo 2021-05-17T21:42:47.8428506Z CC src/unix/libuv_la-pipe.lo 2021-05-17T21:42:48.5534811Z CC src/unix/libuv_la-poll.lo 2021-05-17T21:42:49.1921854Z CC src/unix/libuv_la-process.lo 2021-05-17T21:42:50.0485600Z CC src/unix/libuv_la-random-devurandom.lo 2021-05-17T21:42:50.6350657Z CC src/unix/libuv_la-signal.lo 2021-05-17T21:42:51.6778976Z CC src/unix/libuv_la-stream.lo 2021-05-17T21:42:52.8538450Z CC src/unix/libuv_la-tcp.lo 2021-05-17T21:42:53.6024778Z CC src/unix/libuv_la-thread.lo 2021-05-17T21:42:54.4280705Z CC src/unix/libuv_la-tty.lo 2021-05-17T21:42:55.1188780Z CC src/unix/libuv_la-udp.lo 2021-05-17T21:42:56.3157596Z CC src/unix/libuv_la-linux-core.lo 2021-05-17T21:42:57.5300450Z CC src/unix/libuv_la-linux-inotify.lo 2021-05-17T21:42:58.5000687Z CC src/unix/libuv_la-linux-syscalls.lo 2021-05-17T21:42:59.0097090Z CC src/unix/libuv_la-procfs-exepath.lo 2021-05-17T21:42:59.5889409Z CC src/unix/libuv_la-proctitle.lo 2021-05-17T21:43:00.2094103Z CC src/unix/libuv_la-random-getrandom.lo 2021-05-17T21:43:00.7894929Z CC src/unix/libuv_la-random-sysctl-linux.lo 2021-05-17T21:43:01.3932161Z CCLD libuv.la 2021-05-17T21:43:01.6168867Z ar: `u' modifier ignored since `D' is the default (see `U') 2021-05-17T21:43:01.6841099Z make[1]: Leaving directory '/tmp/Rtmpxz7fs6/R.INSTALL791651b26c51/fs/src/libuv-1.38.1' 2021-05-17T21:43:01.6863267Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fs.so id.o file.o path.o fs.o link.o utils.o init.o dir.o getmode.o error.o unix/getmode.o bsd/setmode.o bsd/strmode.o bsd/reallocarray.o ./libuv-1.38.1/.libs/libuv.a -pthread -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:01.7864921Z installing to /home/runner/work/_temp/Library/00LOCK-fs/00new/fs/libs 2021-05-17T21:43:01.7899621Z ** R 2021-05-17T21:43:01.8013588Z ** inst 2021-05-17T21:43:01.8027928Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:03.0931992Z ** help 2021-05-17T21:43:03.1735783Z *** installing help indices 2021-05-17T21:43:03.2353408Z ** building package indices 2021-05-17T21:43:03.4989216Z ** installing vignettes 2021-05-17T21:43:03.5105645Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:03.7667158Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:03.7884740Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:04.0829083Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:04.0842318Z * DONE (fs) 2021-05-17T21:43:04.3703346Z * installing *source* package ‘clipr’ ... 2021-05-17T21:43:04.3718908Z ** package ‘clipr’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:04.3720400Z ** using staged installation 2021-05-17T21:43:04.3977808Z ** R 2021-05-17T21:43:04.4022941Z ** inst 2021-05-17T21:43:04.4034215Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:04.8063564Z ** help 2021-05-17T21:43:04.8276249Z *** installing help indices 2021-05-17T21:43:04.8534981Z ** building package indices 2021-05-17T21:43:05.0740891Z ** installing vignettes 2021-05-17T21:43:05.0800591Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:05.2898315Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:05.5011079Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:05.5019949Z * DONE (clipr) 2021-05-17T21:43:06.4506648Z * installing *source* package ‘git2r’ ... 2021-05-17T21:43:06.4796364Z ** package ‘git2r’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:06.4797684Z ** using staged installation 2021-05-17T21:43:06.6811120Z checking build system type... x86_64-unknown-linux-gnu 2021-05-17T21:43:06.6812907Z checking host system type... x86_64-unknown-linux-gnu 2021-05-17T21:43:06.6821083Z checking for gcc... gcc 2021-05-17T21:43:06.7463717Z checking whether the C compiler works... yes 2021-05-17T21:43:06.7465077Z checking for C compiler default output file name... a.out 2021-05-17T21:43:06.7870169Z checking for suffix of executables... 2021-05-17T21:43:06.8342050Z checking whether we are cross compiling... no 2021-05-17T21:43:06.8587106Z checking for suffix of object files... o 2021-05-17T21:43:06.8801319Z checking whether we are using the GNU C compiler... yes 2021-05-17T21:43:06.9023240Z checking whether gcc accepts -g... yes 2021-05-17T21:43:06.9428065Z checking for gcc option to accept ISO C89... none needed 2021-05-17T21:43:06.9436325Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T21:43:06.9452708Z checking pkg-config is at least version 0.9.0... yes 2021-05-17T21:43:06.9598190Z Found pkg-config cflags and libs! 2021-05-17T21:43:07.0624145Z checking whether the libgit2 version will work in git2r... yes 2021-05-17T21:43:07.2028081Z checking whether the libgit2 function git_buf_dispose is available... yes 2021-05-17T21:43:07.3444201Z checking whether the libgit2 constant GIT_OBJECT_ANY is available... yes 2021-05-17T21:43:07.4814045Z checking whether the libgit2 function git_error_last is available... yes 2021-05-17T21:43:07.5995628Z checking whether the libgit2 function git_oid_is_zero is available... no 2021-05-17T21:43:07.5998149Z ----- Results of the git2r package configure ----- 2021-05-17T21:43:07.5998831Z 2021-05-17T21:43:07.6000374Z PKG_CFLAGS: -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR 2021-05-17T21:43:07.6001424Z PKG_LIBS: -lgit2 2021-05-17T21:43:07.6001932Z 2021-05-17T21:43:07.6002843Z -------------------------------------------------- 2021-05-17T21:43:07.6198256Z configure: creating ./config.status 2021-05-17T21:43:07.6978023Z config.status: creating src/Makevars 2021-05-17T21:43:07.7610220Z ** libs 2021-05-17T21:43:07.7672273Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r.c -o git2r.o 2021-05-17T21:43:07.8424029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_S3.c -o git2r_S3.o 2021-05-17T21:43:07.8995130Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_arg.c -o git2r_arg.o 2021-05-17T21:43:08.0848381Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blame.c -o git2r_blame.o 2021-05-17T21:43:08.1874553Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_blob.c -o git2r_blob.o 2021-05-17T21:43:08.3283888Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_branch.c -o git2r_branch.o 2021-05-17T21:43:08.5958367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_checkout.c -o git2r_checkout.o 2021-05-17T21:43:08.7017721Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_clone.c -o git2r_clone.o 2021-05-17T21:43:08.8033839Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_commit.c -o git2r_commit.o 2021-05-17T21:43:08.9695348Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_config.c -o git2r_config.o 2021-05-17T21:43:09.1464908Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_cred.c -o git2r_cred.o 2021-05-17T21:43:09.2486655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_diff.c -o git2r_diff.o 2021-05-17T21:43:09.5378937Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_error.c -o git2r_error.o 2021-05-17T21:43:09.6119683Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_graph.c -o git2r_graph.o 2021-05-17T21:43:09.7088520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_index.c -o git2r_index.o 2021-05-17T21:43:09.8061068Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_libgit2.c -o git2r_libgit2.o 2021-05-17T21:43:09.8973865Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_merge.c -o git2r_merge.o 2021-05-17T21:43:10.1012929Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_note.c -o git2r_note.o 2021-05-17T21:43:10.2497344Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_object.c -o git2r_object.o 2021-05-17T21:43:10.3475076Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_odb.c -o git2r_odb.o 2021-05-17T21:43:10.5274205Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_oid.c -o git2r_oid.o 2021-05-17T21:43:10.6010163Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_push.c -o git2r_push.o 2021-05-17T21:43:10.6908400Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reference.c -o git2r_reference.o 2021-05-17T21:43:10.7948444Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reflog.c -o git2r_reflog.o 2021-05-17T21:43:10.8928628Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_remote.c -o git2r_remote.o 2021-05-17T21:43:11.0901767Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_repository.c -o git2r_repository.o 2021-05-17T21:43:11.2675062Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_reset.c -o git2r_reset.o 2021-05-17T21:43:11.3615597Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revparse.c -o git2r_revparse.o 2021-05-17T21:43:11.4540418Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_revwalk.c -o git2r_revwalk.o 2021-05-17T21:43:11.6587019Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_signature.c -o git2r_signature.o 2021-05-17T21:43:11.7484420Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_stash.c -o git2r_stash.o 2021-05-17T21:43:11.8814475Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_status.c -o git2r_status.o 2021-05-17T21:43:12.0602631Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tag.c -o git2r_tag.o 2021-05-17T21:43:12.2047811Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_transfer.c -o git2r_transfer.o 2021-05-17T21:43:12.2757020Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DGIT2R_HAVE_BUF_DISPOSE -DGIT2R_HAVE_OBJECT_ANY -DGIT2R_HAVE_GIT_ERROR -fpic -g -O2 -c git2r_tree.c -o git2r_tree.o 2021-05-17T21:43:12.4107044Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o git2r.so git2r.o git2r_S3.o git2r_arg.o git2r_blame.o git2r_blob.o git2r_branch.o git2r_checkout.o git2r_clone.o git2r_commit.o git2r_config.o git2r_cred.o git2r_diff.o git2r_error.o git2r_graph.o git2r_index.o git2r_libgit2.o git2r_merge.o git2r_note.o git2r_object.o git2r_odb.o git2r_oid.o git2r_push.o git2r_reference.o git2r_reflog.o git2r_remote.o git2r_repository.o git2r_reset.o git2r_revparse.o git2r_revwalk.o git2r_signature.o git2r_stash.o git2r_status.o git2r_tag.o git2r_transfer.o git2r_tree.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:12.4590825Z installing to /home/runner/work/_temp/Library/00LOCK-git2r/00new/git2r/libs 2021-05-17T21:43:12.4592267Z ** R 2021-05-17T21:43:12.4810671Z ** inst 2021-05-17T21:43:12.4822607Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:13.7214374Z ** help 2021-05-17T21:43:14.0062908Z *** installing help indices 2021-05-17T21:43:14.2468509Z ** building package indices 2021-05-17T21:43:14.6519357Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:14.8631578Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:14.8842014Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:15.1060872Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:15.1076012Z * DONE (git2r) 2021-05-17T21:43:15.3559491Z * installing *source* package ‘askpass’ ... 2021-05-17T21:43:15.3570847Z ** package ‘askpass’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:15.3572180Z ** using staged installation 2021-05-17T21:43:15.3728506Z ** libs 2021-05-17T21:43:15.3779645Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c askpass.c -o askpass.o 2021-05-17T21:43:15.4368473Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o askpass.so askpass.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:15.4600439Z installing to /home/runner/work/_temp/Library/00LOCK-askpass/00new/askpass/libs 2021-05-17T21:43:15.4617761Z ** R 2021-05-17T21:43:15.4651618Z ** inst 2021-05-17T21:43:15.4660619Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:15.7560772Z ** help 2021-05-17T21:43:15.7747632Z *** installing help indices 2021-05-17T21:43:15.7897747Z ** building package indices 2021-05-17T21:43:15.9997060Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:16.1985186Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:16.2170152Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:16.4070233Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:16.4077204Z * DONE (askpass) 2021-05-17T21:43:16.8302110Z * installing *source* package ‘cli’ ... 2021-05-17T21:43:16.8367924Z ** package ‘cli’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:16.8370453Z ** using staged installation 2021-05-17T21:43:16.8607452Z ** R 2021-05-17T21:43:16.8914339Z ** inst 2021-05-17T21:43:16.8931533Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:20.1863381Z ** help 2021-05-17T21:43:20.4042339Z *** installing help indices 2021-05-17T21:43:20.5607239Z *** copying figures 2021-05-17T21:43:20.5608362Z ** building package indices 2021-05-17T21:43:20.9232365Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:21.1704354Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:21.4816700Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:21.4846248Z * DONE (cli) 2021-05-17T21:43:21.8663939Z * installing *source* package ‘purrr’ ... 2021-05-17T21:43:21.8722181Z ** package ‘purrr’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:21.8722822Z ** using staged installation 2021-05-17T21:43:21.8911387Z ** libs 2021-05-17T21:43:21.8962592Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c backports.c -o backports.o 2021-05-17T21:43:21.9397693Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T21:43:22.0459996Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T21:43:22.1464508Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c flatten.c -o flatten.o 2021-05-17T21:43:22.2689490Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:43:22.3163550Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c map.c -o map.o 2021-05-17T21:43:22.4539700Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pluck.c -o pluck.o 2021-05-17T21:43:22.6026507Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c transpose.c -o transpose.o 2021-05-17T21:43:22.7011950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:43:22.7622823Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o purrr.so backports.o coerce.o conditions.o flatten.o init.o map.o pluck.o transpose.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:22.7873861Z installing to /home/runner/work/_temp/Library/00LOCK-purrr/00new/purrr/libs 2021-05-17T21:43:22.7890857Z ** R 2021-05-17T21:43:22.8094366Z ** inst 2021-05-17T21:43:22.8105429Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:24.3840936Z ** help 2021-05-17T21:43:24.5731976Z *** installing help indices 2021-05-17T21:43:24.6942026Z *** copying figures 2021-05-17T21:43:24.6948392Z ** building package indices 2021-05-17T21:43:25.0137552Z ** installing vignettes 2021-05-17T21:43:25.0234286Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:25.2731496Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:25.2925878Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:25.5423283Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:25.5437224Z * DONE (purrr) 2021-05-17T21:43:25.8399889Z * installing *source* package ‘lifecycle’ ... 2021-05-17T21:43:25.8429333Z ** package ‘lifecycle’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:25.8431004Z ** using staged installation 2021-05-17T21:43:25.8592476Z ** R 2021-05-17T21:43:25.8649137Z ** inst 2021-05-17T21:43:25.8662087Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:26.3904741Z ** help 2021-05-17T21:43:26.4269445Z *** installing help indices 2021-05-17T21:43:26.4557670Z *** copying figures 2021-05-17T21:43:26.4567328Z ** building package indices 2021-05-17T21:43:26.6889972Z ** installing vignettes 2021-05-17T21:43:26.6949748Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:26.9132367Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:27.1355603Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:27.1367119Z * DONE (lifecycle) 2021-05-17T21:43:27.3892790Z * installing *source* package ‘cachem’ ... 2021-05-17T21:43:27.3908468Z ** package ‘cachem’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:27.3909992Z ** using staged installation 2021-05-17T21:43:27.4056586Z ** libs 2021-05-17T21:43:27.4122154Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cache.c -o cache.o 2021-05-17T21:43:27.4698367Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:43:27.5235619Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o cachem.so cache.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:27.5463996Z installing to /home/runner/work/_temp/Library/00LOCK-cachem/00new/cachem/libs 2021-05-17T21:43:27.5481052Z ** R 2021-05-17T21:43:27.5618375Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:28.2376441Z ** help 2021-05-17T21:43:28.2630070Z *** installing help indices 2021-05-17T21:43:28.2850653Z ** building package indices 2021-05-17T21:43:28.5166723Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:28.7437031Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:28.7623964Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:28.9863546Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:28.9871512Z * DONE (cachem) 2021-05-17T21:43:29.5564885Z * installing *source* package ‘openssl’ ... 2021-05-17T21:43:29.5700384Z ** package ‘openssl’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:29.5701471Z ** using staged installation 2021-05-17T21:43:29.5787860Z Found pkg-config cflags and libs! 2021-05-17T21:43:29.6678687Z Using PKG_CFLAGS= 2021-05-17T21:43:30.0213850Z Using PKG_LIBS=-l:libssl.so.1.1 -l:libcrypto.so.1.1 2021-05-17T21:43:30.0394403Z ** libs 2021-05-17T21:43:30.0457870Z rm -f aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o openssl.so bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T21:43:30.0484326Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T21:43:30.1489893Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:43:30.2396359Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bignum.c -o bignum.o 2021-05-17T21:43:30.3579107Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cert.c -o cert.o 2021-05-17T21:43:30.5444561Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c compatibility.c -o compatibility.o 2021-05-17T21:43:30.6188747Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffie.c -o diffie.o 2021-05-17T21:43:30.7296185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c envelope.c -o envelope.o 2021-05-17T21:43:30.8638058Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error.c -o error.o 2021-05-17T21:43:30.9253612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T21:43:31.0366950Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c info.c -o info.o 2021-05-17T21:43:31.1130505Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keygen.c -o keygen.o 2021-05-17T21:43:31.2319815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c keys.c -o keys.o 2021-05-17T21:43:31.3830963Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c onload.c -o onload.o 2021-05-17T21:43:31.4880728Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c openssh.c -o openssh.o 2021-05-17T21:43:31.7076060Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c password.c -o password.o 2021-05-17T21:43:31.7732815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pbkdf.c -o pbkdf.o 2021-05-17T21:43:31.8205803Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pem.c -o pem.o 2021-05-17T21:43:31.9781991Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs12.c -o pkcs12.o 2021-05-17T21:43:32.1431929Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pkcs7.c -o pkcs7.o 2021-05-17T21:43:32.2934313Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rand.c -o rand.o 2021-05-17T21:43:32.3500834Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rsa.c -o rsa.o 2021-05-17T21:43:32.4702097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signing.c -o signing.o 2021-05-17T21:43:32.6122260Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c ssl.c -o ssl.o 2021-05-17T21:43:32.7793374Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stream.c -o stream.o 2021-05-17T21:43:32.9128968Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write.c -o write.o 2021-05-17T21:43:33.0599790Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x25519.c -o x25519.o 2021-05-17T21:43:33.2087269Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/bcrypt_pbkdf.c -o bcrypt/bcrypt_pbkdf.o 2021-05-17T21:43:33.2904009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bcrypt/blowfish.c -o bcrypt/blowfish.o 2021-05-17T21:43:33.5154152Z ar rcs bcrypt/libstatbcrypt.a bcrypt/bcrypt_pbkdf.o bcrypt/blowfish.o 2021-05-17T21:43:33.5213207Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o openssl.so aes.o base64.o bignum.o cert.o compatibility.o diffie.o envelope.o error.o hash.o info.o keygen.o keys.o onload.o openssh.o password.o pbkdf.o pem.o pkcs12.o pkcs7.o rand.o rsa.o signing.o ssl.o stream.o write.o x25519.o -Lbcrypt -lstatbcrypt -l:libssl.so.1.1 -l:libcrypto.so.1.1 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:33.5903020Z installing to /home/runner/work/_temp/Library/00LOCK-openssl/00new/openssl/libs 2021-05-17T21:43:33.5922091Z ** R 2021-05-17T21:43:33.6044614Z ** inst 2021-05-17T21:43:33.6112969Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:34.8442087Z ** help 2021-05-17T21:43:34.9080795Z *** installing help indices 2021-05-17T21:43:34.9551987Z ** building package indices 2021-05-17T21:43:35.2026402Z ** installing vignettes 2021-05-17T21:43:35.2200688Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:35.4359321Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:35.4543734Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:35.6857751Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:35.6872122Z * DONE (openssl) 2021-05-17T21:43:35.9453129Z * installing *source* package ‘memoise’ ... 2021-05-17T21:43:35.9458187Z ** package ‘memoise’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:35.9459515Z ** using staged installation 2021-05-17T21:43:35.9636869Z ** R 2021-05-17T21:43:35.9764097Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:36.4557441Z ** help 2021-05-17T21:43:36.4865021Z *** installing help indices 2021-05-17T21:43:36.5149360Z ** building package indices 2021-05-17T21:43:36.7490400Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:36.9759839Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:37.1967728Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:37.1973643Z * DONE (memoise) 2021-05-17T21:43:37.5760402Z * installing *source* package ‘httr’ ... 2021-05-17T21:43:37.5813020Z ** package ‘httr’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:37.5814147Z ** using staged installation 2021-05-17T21:43:37.6011471Z ** R 2021-05-17T21:43:37.6222055Z ** demo 2021-05-17T21:43:37.6237252Z ** inst 2021-05-17T21:43:37.6254825Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:40.9347427Z ** help 2021-05-17T21:43:41.1251688Z *** installing help indices 2021-05-17T21:43:41.2585621Z ** building package indices 2021-05-17T21:43:41.5890446Z ** installing vignettes 2021-05-17T21:43:41.5970771Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:41.8054224Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:42.0692946Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:42.0726136Z * DONE (httr) 2021-05-17T21:43:42.3340650Z * installing *source* package ‘credentials’ ... 2021-05-17T21:43:42.3357327Z ** package ‘credentials’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:42.3358432Z ** using staged installation 2021-05-17T21:43:42.3512354Z ** R 2021-05-17T21:43:42.3564197Z ** inst 2021-05-17T21:43:42.3577499Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:42.8961818Z ** help 2021-05-17T21:43:42.9175200Z *** installing help indices 2021-05-17T21:43:42.9403470Z ** building package indices 2021-05-17T21:43:43.1623783Z ** installing vignettes 2021-05-17T21:43:43.1626630Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:43.5204454Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:43.7866731Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:43.7874749Z * DONE (credentials) 2021-05-17T21:43:44.0547854Z * installing *source* package ‘gh’ ... 2021-05-17T21:43:44.0567450Z ** package ‘gh’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:44.0568687Z ** using staged installation 2021-05-17T21:43:44.0756660Z ** R 2021-05-17T21:43:44.0869223Z ** inst 2021-05-17T21:43:44.0880487Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:45.4252170Z ** help 2021-05-17T21:43:45.4585381Z *** installing help indices 2021-05-17T21:43:45.4917380Z ** building package indices 2021-05-17T21:43:45.7143357Z ** installing vignettes 2021-05-17T21:43:45.7195078Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:45.9992448Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:46.2957632Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:46.2969005Z * DONE (gh) 2021-05-17T21:43:46.5974535Z * installing *source* package ‘gert’ ... 2021-05-17T21:43:46.6010318Z ** package ‘gert’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:46.6011064Z ** using staged installation 2021-05-17T21:43:46.6109862Z Found pkg-config cflags and libs! 2021-05-17T21:43:46.7014633Z Using PKG_CFLAGS= 2021-05-17T21:43:46.7016518Z Using PKG_LIBS=-lgit2 2021-05-17T21:43:46.7429336Z Configuration OK! 2021-05-17T21:43:46.7638394Z ** libs 2021-05-17T21:43:46.7702474Z rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o 2021-05-17T21:43:46.7733557Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c branch.c -o branch.o 2021-05-17T21:43:47.0242200Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c clone.c -o clone.o 2021-05-17T21:43:47.2860038Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c commit.c -o commit.o 2021-05-17T21:43:47.5395296Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c config.c -o config.o 2021-05-17T21:43:47.6366731Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conflicts.c -o conflicts.o 2021-05-17T21:43:47.7204914Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c files.c -o files.o 2021-05-17T21:43:47.8899094Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:43:47.9644820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c merge.c -o merge.o 2021-05-17T21:43:48.0862525Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rebase.c -o rebase.o 2021-05-17T21:43:48.2140484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c stash.c -o stash.o 2021-05-17T21:43:48.3103520Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c submodules.c -o submodules.o 2021-05-17T21:43:48.4463478Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c tag.c -o tag.o 2021-05-17T21:43:48.5435196Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:43:48.6812846Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:43:48.7635219Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:43:48.7978392Z installing to /home/runner/work/_temp/Library/00LOCK-gert/00new/gert/libs 2021-05-17T21:43:48.7995786Z ** R 2021-05-17T21:43:48.8098729Z ** inst 2021-05-17T21:43:48.8111631Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:49.7263365Z ** help 2021-05-17T21:43:49.7911438Z *** installing help indices 2021-05-17T21:43:49.8426400Z ** building package indices 2021-05-17T21:43:50.0863323Z ** installing vignettes 2021-05-17T21:43:50.0968797Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:50.3602864Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:43:50.3801059Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:50.6509469Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:50.6510681Z * DONE (gert) 2021-05-17T21:43:51.1290989Z * installing *source* package ‘usethis’ ... 2021-05-17T21:43:51.1380210Z ** package ‘usethis’ successfully unpacked and MD5 sums checked 2021-05-17T21:43:51.1381278Z ** using staged installation 2021-05-17T21:43:51.1660949Z ** R 2021-05-17T21:43:51.2068766Z ** inst 2021-05-17T21:43:51.2104462Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:43:54.6721919Z ** help 2021-05-17T21:43:54.9095315Z *** installing help indices 2021-05-17T21:43:55.0711087Z *** copying figures 2021-05-17T21:43:55.0717730Z ** building package indices 2021-05-17T21:43:55.4414960Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:43:55.7847727Z ** testing if installed package can be loaded from final location 2021-05-17T21:43:56.1675784Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:43:56.1710062Z * DONE (usethis) 2021-05-17T21:43:56.1815518Z 2021-05-17T21:43:56.1816441Z The downloaded source packages are in 2021-05-17T21:43:56.1818359Z ‘/tmp/RtmpWkFgDz/downloaded_packages’ 2021-05-17T21:43:56.1837529Z Running `R CMD build`... 2021-05-17T21:43:58.6686220Z * checking for file ‘/tmp/RtmpWkFgDz/remotes72dc2a44a466/ropensci-tic-3b4dfb8/DESCRIPTION’ ... OK 2021-05-17T21:43:58.6688083Z * preparing ‘tic’: 2021-05-17T21:43:58.6689526Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:43:58.6690633Z * installing the package to process help pages 2021-05-17T21:43:58.6692026Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:43:58.6693161Z * checking for empty or unneeded directories 2021-05-17T21:43:58.6694344Z Removed empty directory ‘tic/.circleci’ 2021-05-17T21:43:58.6695535Z Removed empty directory ‘tic/pkgdown’ 2021-05-17T21:43:58.6696609Z * building ‘tic_0.10.0.tar.gz’ 2021-05-17T21:43:58.6705072Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:43:58.6706430Z (as ‘lib’ is unspecified) 2021-05-17T21:43:59.0906095Z * installing *source* package ‘tic’ ... 2021-05-17T21:43:59.0934495Z ** using staged installation 2021-05-17T21:43:59.1221286Z ** R 2021-05-17T21:43:59.1458439Z ** inst 2021-05-17T21:43:59.1495084Z ** preparing package for lazy loading 2021-05-17T21:43:59.5661955Z ** help 2021-05-17T21:43:59.7483180Z *** installing help indices 2021-05-17T21:43:59.8667501Z *** copying figures 2021-05-17T21:43:59.8674549Z ** building package indices 2021-05-17T21:44:00.1823325Z ** installing vignettes 2021-05-17T21:44:00.1857877Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:00.4934864Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:00.8516296Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:00.8547729Z * DONE (tic) 2021-05-17T21:44:00.8690232Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:44:01.2228344Z Downloading GitHub repo muschellij2/ghtravis@HEAD 2021-05-17T21:44:02.5738455Z desc (1.3.0 -> 7be86f2f7...) [GitHub] 2021-05-17T21:44:02.5740052Z utf8 (NA -> 1.2.1 ) [CRAN] 2021-05-17T21:44:02.5743350Z Installing 37 packages: utf8, vctrs, pkgconfig, pillar, tibble, rematch2, fansi, diffobj, waldo, ps, processx, praise, pkgload, evaluate, ellipsis, digest, callr, brio, xml2, xfun, markdown, highr, stringr, stringi, Rcpp, knitr, commonmark, brew, xopen, sessioninfo, prettyunits, pkgbuild, testthat, rversions, roxygen2, rcmdcheck, devtools 2021-05-17T21:44:02.5745817Z vctrs (NA -> 0.3.8 ) [CRAN] 2021-05-17T21:44:02.5746913Z pkgconfig (NA -> 2.0.3 ) [CRAN] 2021-05-17T21:44:02.5748169Z pillar (NA -> 1.6.1 ) [CRAN] 2021-05-17T21:44:02.5749369Z tibble (NA -> 3.1.2 ) [CRAN] 2021-05-17T21:44:02.5753895Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:44:02.5754780Z rematch2 (NA -> 2.1.2 ) [CRAN] 2021-05-17T21:44:02.5758254Z (as ‘lib’ is unspecified) 2021-05-17T21:44:02.5759173Z fansi (NA -> 0.4.2 ) [CRAN] 2021-05-17T21:44:02.5766301Z diffobj (NA -> 0.3.4 ) [CRAN] 2021-05-17T21:44:02.5767192Z waldo (NA -> 0.2.5 ) [CRAN] 2021-05-17T21:44:02.5768020Z ps (NA -> 1.6.0 ) [CRAN] 2021-05-17T21:44:02.5768847Z processx (NA -> 3.5.2 ) [CRAN] 2021-05-17T21:44:02.5769707Z praise (NA -> 1.0.0 ) [CRAN] 2021-05-17T21:44:02.5770558Z pkgload (NA -> 1.2.1 ) [CRAN] 2021-05-17T21:44:02.5771403Z evaluate (NA -> 0.14 ) [CRAN] 2021-05-17T21:44:02.5772271Z ellipsis (NA -> 0.3.2 ) [CRAN] 2021-05-17T21:44:02.5773128Z digest (NA -> 0.6.27 ) [CRAN] 2021-05-17T21:44:02.5773946Z callr (NA -> 3.7.0 ) [CRAN] 2021-05-17T21:44:02.5774772Z brio (NA -> 1.1.2 ) [CRAN] 2021-05-17T21:44:02.5775618Z xml2 (NA -> 1.3.2 ) [CRAN] 2021-05-17T21:44:02.5776434Z xfun (NA -> 0.23 ) [CRAN] 2021-05-17T21:44:02.5777357Z markdown (NA -> 1.1 ) [CRAN] 2021-05-17T21:44:02.5778230Z highr (NA -> 0.9 ) [CRAN] 2021-05-17T21:44:02.5779218Z stringr (NA -> 1.4.0 ) [CRAN] 2021-05-17T21:44:02.5780033Z stringi (NA -> 1.6.2 ) [CRAN] 2021-05-17T21:44:02.5780849Z Rcpp (NA -> 1.0.6 ) [CRAN] 2021-05-17T21:44:02.5781637Z knitr (NA -> 1.33 ) [CRAN] 2021-05-17T21:44:02.5782726Z commonmark (NA -> 1.7 ) [CRAN] 2021-05-17T21:44:02.5783925Z brew (NA -> 1.0-6 ) [CRAN] 2021-05-17T21:44:02.5784907Z xopen (NA -> 1.0.0 ) [CRAN] 2021-05-17T21:44:02.5786113Z sessioninfo (NA -> 1.1.1 ) [CRAN] 2021-05-17T21:44:02.5787179Z prettyunits (NA -> 1.1.1 ) [CRAN] 2021-05-17T21:44:02.5788618Z pkgbuild (NA -> 1.2.0 ) [CRAN] 2021-05-17T21:44:02.5789582Z testthat (NA -> 3.0.2 ) [CRAN] 2021-05-17T21:44:02.5827821Z rversions (NA -> 2.0.2 ) [CRAN] 2021-05-17T21:44:02.5828586Z roxygen2 (NA -> 7.1.1 ) [CRAN] 2021-05-17T21:44:02.5829546Z rcmdcheck (NA -> 1.3.3 ) [CRAN] 2021-05-17T21:44:02.5830222Z devtools (NA -> 2.4.1 ) [CRAN] 2021-05-17T21:44:19.8829069Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/utf8_1.2.1.tar.gz' 2021-05-17T21:44:21.0466681Z Content type 'binary/octet-stream' length 237667 bytes (232 KB) 2021-05-17T21:44:21.0593296Z ================================================== 2021-05-17T21:44:21.0593853Z downloaded 232 KB 2021-05-17T21:44:21.0594490Z 2021-05-17T21:44:21.0648366Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/vctrs_0.3.8.tar.gz' 2021-05-17T21:44:22.0960021Z Content type 'binary/octet-stream' length 784938 bytes (766 KB) 2021-05-17T21:44:22.1226662Z ================================================== 2021-05-17T21:44:22.1227483Z downloaded 766 KB 2021-05-17T21:44:22.1227806Z 2021-05-17T21:44:22.1230320Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgconfig_2.0.3.tar.gz' 2021-05-17T21:44:23.4835378Z Content type 'application/x-tar' length 6108 bytes 2021-05-17T21:44:23.4836714Z ================================================== 2021-05-17T21:44:23.4837099Z downloaded 6108 bytes 2021-05-17T21:44:23.4837355Z 2021-05-17T21:44:23.4880847Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pillar_1.6.1.tar.gz' 2021-05-17T21:44:24.5426001Z Content type 'binary/octet-stream' length 1114809 bytes (1.1 MB) 2021-05-17T21:44:24.5680221Z ================================================== 2021-05-17T21:44:24.5681012Z downloaded 1.1 MB 2021-05-17T21:44:24.5681483Z 2021-05-17T21:44:24.5725017Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tibble_3.1.2.tar.gz' 2021-05-17T21:44:25.4514286Z Content type 'binary/octet-stream' length 689638 bytes (673 KB) 2021-05-17T21:44:25.4733506Z ================================================== 2021-05-17T21:44:25.4734662Z downloaded 673 KB 2021-05-17T21:44:25.4735124Z 2021-05-17T21:44:25.4773634Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rematch2_2.1.2.tar.gz' 2021-05-17T21:44:26.5867676Z Content type 'binary/octet-stream' length 13441 bytes (13 KB) 2021-05-17T21:44:26.5868535Z ================================================== 2021-05-17T21:44:26.5868913Z downloaded 13 KB 2021-05-17T21:44:26.5869155Z 2021-05-17T21:44:26.5905058Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/fansi_0.4.2.tar.gz' 2021-05-17T21:44:27.4145324Z Content type 'binary/octet-stream' length 270970 bytes (264 KB) 2021-05-17T21:44:27.4296560Z ================================================== 2021-05-17T21:44:27.4297634Z downloaded 264 KB 2021-05-17T21:44:27.4298227Z 2021-05-17T21:44:27.4333700Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/diffobj_0.3.4.tar.gz' 2021-05-17T21:44:28.4832007Z Content type 'binary/octet-stream' length 476003 bytes (464 KB) 2021-05-17T21:44:28.5030361Z ================================================== 2021-05-17T21:44:28.5031796Z downloaded 464 KB 2021-05-17T21:44:28.5032383Z 2021-05-17T21:44:28.5071241Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/waldo_0.2.5.tar.gz' 2021-05-17T21:44:29.1886271Z Content type 'binary/octet-stream' length 26261 bytes (25 KB) 2021-05-17T21:44:29.1887481Z ================================================== 2021-05-17T21:44:29.1888436Z downloaded 25 KB 2021-05-17T21:44:29.1921433Z 2021-05-17T21:44:29.1923027Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ps_1.6.0.tar.gz' 2021-05-17T21:44:30.3737058Z Content type 'binary/octet-stream' length 120042 bytes (117 KB) 2021-05-17T21:44:30.3786713Z ================================================== 2021-05-17T21:44:30.3787708Z downloaded 117 KB 2021-05-17T21:44:30.3788036Z 2021-05-17T21:44:30.3831827Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/processx_3.5.2.tar.gz' 2021-05-17T21:44:31.4137062Z Content type 'binary/octet-stream' length 141949 bytes (138 KB) 2021-05-17T21:44:31.4266930Z ================================================== 2021-05-17T21:44:31.4267424Z downloaded 138 KB 2021-05-17T21:44:31.4267889Z 2021-05-17T21:44:31.4308775Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/praise_1.0.0.tar.gz' 2021-05-17T21:44:31.9414103Z Content type 'application/x-tar' length 6100 bytes 2021-05-17T21:44:31.9436922Z ================================================== 2021-05-17T21:44:31.9438079Z downloaded 6100 bytes 2021-05-17T21:44:31.9438835Z 2021-05-17T21:44:31.9477335Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgload_1.2.1.tar.gz' 2021-05-17T21:44:32.6570974Z Content type 'binary/octet-stream' length 60723 bytes (59 KB) 2021-05-17T21:44:32.6619788Z ================================================== 2021-05-17T21:44:32.6620445Z downloaded 59 KB 2021-05-17T21:44:32.6620906Z 2021-05-17T21:44:32.6653650Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/evaluate_0.14.tar.gz' 2021-05-17T21:44:33.3499117Z Content type 'application/x-tar' length 23661 bytes (23 KB) 2021-05-17T21:44:33.3505542Z ================================================== 2021-05-17T21:44:33.3506744Z downloaded 23 KB 2021-05-17T21:44:33.3507158Z 2021-05-17T21:44:33.3541218Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/ellipsis_0.3.2.tar.gz' 2021-05-17T21:44:34.5047616Z Content type 'binary/octet-stream' length 8130 bytes 2021-05-17T21:44:34.5048514Z ================================================== 2021-05-17T21:44:34.5048957Z downloaded 8130 bytes 2021-05-17T21:44:34.5049412Z 2021-05-17T21:44:34.5089834Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/digest_0.6.27.tar.gz' 2021-05-17T21:44:35.5494009Z Content type 'binary/octet-stream' length 164442 bytes (160 KB) 2021-05-17T21:44:35.5616262Z ================================================== 2021-05-17T21:44:35.5617062Z downloaded 160 KB 2021-05-17T21:44:35.5617369Z 2021-05-17T21:44:35.5659425Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/callr_3.7.0.tar.gz' 2021-05-17T21:44:36.0136390Z Content type 'binary/octet-stream' length 74923 bytes (73 KB) 2021-05-17T21:44:36.0193741Z ================================================== 2021-05-17T21:44:36.0194359Z downloaded 73 KB 2021-05-17T21:44:36.0194596Z 2021-05-17T21:44:36.0230560Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brio_1.1.2.tar.gz' 2021-05-17T21:44:37.4148795Z Content type 'binary/octet-stream' length 12096 bytes (11 KB) 2021-05-17T21:44:37.4149944Z ================================================== 2021-05-17T21:44:37.4150968Z downloaded 11 KB 2021-05-17T21:44:37.4151448Z 2021-05-17T21:44:37.4194028Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xml2_1.3.2.tar.gz' 2021-05-17T21:44:38.1233164Z Content type 'binary/octet-stream' length 272736 bytes (266 KB) 2021-05-17T21:44:38.1383348Z ================================================== 2021-05-17T21:44:38.1384283Z downloaded 266 KB 2021-05-17T21:44:38.1385205Z 2021-05-17T21:44:38.1417120Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xfun_0.23.tar.gz' 2021-05-17T21:44:39.0076606Z Content type 'binary/octet-stream' length 111996 bytes (109 KB) 2021-05-17T21:44:39.0171612Z ================================================== 2021-05-17T21:44:39.0172142Z downloaded 109 KB 2021-05-17T21:44:39.0172414Z 2021-05-17T21:44:39.0216585Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/markdown_1.1.tar.gz' 2021-05-17T21:44:39.9350279Z Content type 'application/x-tar' length 81636 bytes (79 KB) 2021-05-17T21:44:39.9407288Z ================================================== 2021-05-17T21:44:39.9408013Z downloaded 79 KB 2021-05-17T21:44:39.9408919Z 2021-05-17T21:44:39.9459832Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/highr_0.9.tar.gz' 2021-05-17T21:44:40.9779044Z Content type 'binary/octet-stream' length 15361 bytes (15 KB) 2021-05-17T21:44:40.9781555Z ================================================== 2021-05-17T21:44:40.9782042Z downloaded 15 KB 2021-05-17T21:44:40.9782801Z 2021-05-17T21:44:40.9821012Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/stringr_1.4.0.tar.gz' 2021-05-17T21:44:42.0469465Z Content type 'application/x-tar' length 135526 bytes (132 KB) 2021-05-17T21:44:42.0575357Z ================================================== 2021-05-17T21:44:42.0576266Z downloaded 132 KB 2021-05-17T21:44:42.0576958Z 2021-05-17T21:44:42.0617989Z trying URL 'https://cloud.r-project.org/src/contrib/stringi_1.6.2.tar.gz' 2021-05-17T21:44:42.1949655Z Content type 'application/x-gzip' length 7575370 bytes (7.2 MB) 2021-05-17T21:44:42.3610385Z ================================================== 2021-05-17T21:44:42.3611317Z downloaded 7.2 MB 2021-05-17T21:44:42.3611659Z 2021-05-17T21:44:42.3641931Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/Rcpp_1.0.6.tar.gz' 2021-05-17T21:44:43.0530901Z Content type 'binary/octet-stream' length 2954251 bytes (2.8 MB) 2021-05-17T21:44:43.1036426Z ================================================== 2021-05-17T21:44:43.1038434Z downloaded 2.8 MB 2021-05-17T21:44:43.1039511Z 2021-05-17T21:44:43.1072923Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/knitr_1.33.tar.gz' 2021-05-17T21:44:43.8016673Z Content type 'binary/octet-stream' length 890176 bytes (869 KB) 2021-05-17T21:44:43.9173711Z ================================================== 2021-05-17T21:44:43.9175215Z downloaded 869 KB 2021-05-17T21:44:43.9175930Z 2021-05-17T21:44:43.9215061Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/commonmark_1.7.tar.gz' 2021-05-17T21:44:44.6148788Z Content type 'application/x-tar' length 134376 bytes (131 KB) 2021-05-17T21:44:44.6248646Z ================================================== 2021-05-17T21:44:44.6249336Z downloaded 131 KB 2021-05-17T21:44:44.6249623Z 2021-05-17T21:44:44.6287061Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/brew_1.0-6.tar.gz' 2021-05-17T21:44:45.1455355Z Content type 'application/x-tar' length 83765 bytes (81 KB) 2021-05-17T21:44:45.1513712Z ================================================== 2021-05-17T21:44:45.1514738Z downloaded 81 KB 2021-05-17T21:44:45.1515140Z 2021-05-17T21:44:45.1550283Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/xopen_1.0.0.tar.gz' 2021-05-17T21:44:45.6115754Z Content type 'application/x-tar' length 11313 bytes (11 KB) 2021-05-17T21:44:45.6122437Z ================================================== 2021-05-17T21:44:45.6123205Z downloaded 11 KB 2021-05-17T21:44:45.6123902Z 2021-05-17T21:44:45.6237517Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/sessioninfo_1.1.1.tar.gz' 2021-05-17T21:44:46.1544005Z Content type 'application/x-tar' length 45020 bytes (43 KB) 2021-05-17T21:44:46.1590998Z ================================================== 2021-05-17T21:44:46.1591740Z downloaded 43 KB 2021-05-17T21:44:46.1592189Z 2021-05-17T21:44:46.1626661Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/prettyunits_1.1.1.tar.gz' 2021-05-17T21:44:46.8403023Z Content type 'binary/octet-stream' length 10377 bytes (10 KB) 2021-05-17T21:44:46.8403990Z ================================================== 2021-05-17T21:44:46.8404525Z downloaded 10 KB 2021-05-17T21:44:46.8404897Z 2021-05-17T21:44:46.8442052Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/pkgbuild_1.2.0.tar.gz' 2021-05-17T21:44:47.3617954Z Content type 'binary/octet-stream' length 30622 bytes (29 KB) 2021-05-17T21:44:47.3624223Z ================================================== 2021-05-17T21:44:47.3625476Z downloaded 29 KB 2021-05-17T21:44:47.3626414Z 2021-05-17T21:44:47.3658546Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/testthat_3.0.2.tar.gz' 2021-05-17T21:44:48.0524572Z Content type 'binary/octet-stream' length 678280 bytes (662 KB) 2021-05-17T21:44:48.0818891Z ================================================== 2021-05-17T21:44:48.0819388Z downloaded 662 KB 2021-05-17T21:44:48.0819640Z 2021-05-17T21:44:48.0858367Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rversions_2.0.2.tar.gz' 2021-05-17T21:44:48.6158172Z Content type 'binary/octet-stream' length 40913 bytes (39 KB) 2021-05-17T21:44:48.6204158Z ================================================== 2021-05-17T21:44:48.6204671Z downloaded 39 KB 2021-05-17T21:44:48.6204985Z 2021-05-17T21:44:48.6244437Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/roxygen2_7.1.1.tar.gz' 2021-05-17T21:44:49.1468593Z Content type 'binary/octet-stream' length 255098 bytes (249 KB) 2021-05-17T21:44:49.1614839Z ================================================== 2021-05-17T21:44:49.1615773Z downloaded 249 KB 2021-05-17T21:44:49.1616299Z 2021-05-17T21:44:49.1648501Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rcmdcheck_1.3.3.tar.gz' 2021-05-17T21:44:49.9806819Z Content type 'application/x-tar' length 44991 bytes (43 KB) 2021-05-17T21:44:49.9809943Z ================================================== 2021-05-17T21:44:49.9810512Z downloaded 43 KB 2021-05-17T21:44:49.9810771Z 2021-05-17T21:44:49.9843986Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/devtools_2.4.1.tar.gz' 2021-05-17T21:44:50.6607033Z Content type 'binary/octet-stream' length 370450 bytes (361 KB) 2021-05-17T21:44:50.6867253Z ================================================== 2021-05-17T21:44:50.6867778Z downloaded 361 KB 2021-05-17T21:44:50.6868324Z 2021-05-17T21:44:51.0587308Z * installing *source* package ‘utf8’ ... 2021-05-17T21:44:51.0661637Z ** package ‘utf8’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:51.0663094Z ** using staged installation 2021-05-17T21:44:51.0826859Z ** libs 2021-05-17T21:44:51.0886928Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c as_utf8.c -o as_utf8.o 2021-05-17T21:44:51.1645078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c bytes.c -o bytes.o 2021-05-17T21:44:51.3362267Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c context.c -o context.o 2021-05-17T21:44:51.4035798Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:44:51.4483775Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render.c -o render.o 2021-05-17T21:44:51.5195753Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c render_table.c -o render_table.o 2021-05-17T21:44:51.7188225Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c string.c -o string.o 2021-05-17T21:44:51.7917103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c text.c -o text.o 2021-05-17T21:44:51.9398467Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_encode.c -o utf8_encode.o 2021-05-17T21:44:52.0298300Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_format.c -o utf8_format.o 2021-05-17T21:44:52.1369613Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_normalize.c -o utf8_normalize.o 2021-05-17T21:44:52.2159167Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_valid.c -o utf8_valid.o 2021-05-17T21:44:52.2860828Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8_width.c -o utf8_width.o 2021-05-17T21:44:52.3526552Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c util.c -o util.o 2021-05-17T21:44:52.4146234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/array.c -o utf8lite/src/array.o 2021-05-17T21:44:52.4727035Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/char.c -o utf8lite/src/char.o 2021-05-17T21:44:52.5494591Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/encode.c -o utf8lite/src/encode.o 2021-05-17T21:44:52.6154788Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/error.c -o utf8lite/src/error.o 2021-05-17T21:44:52.6594222Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/escape.c -o utf8lite/src/escape.o 2021-05-17T21:44:52.7301766Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graph.c -o utf8lite/src/graph.o 2021-05-17T21:44:52.7792373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o 2021-05-17T21:44:53.0195726Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o 2021-05-17T21:44:53.3580488Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/render.c -o utf8lite/src/render.o 2021-05-17T21:44:53.5568691Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/text.c -o utf8lite/src/text.o 2021-05-17T21:44:53.6386003Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o 2021-05-17T21:44:53.7114039Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o 2021-05-17T21:44:53.7967612Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -Iutf8lite/src -fpic -g -O2 -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o 2021-05-17T21:44:53.8796387Z ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o 2021-05-17T21:44:53.8881277Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:44:53.9226705Z installing to /home/runner/work/_temp/Library/00LOCK-utf8/00new/utf8/libs 2021-05-17T21:44:53.9247656Z ** R 2021-05-17T21:44:53.9335323Z ** inst 2021-05-17T21:44:53.9347327Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:54.5070542Z ** help 2021-05-17T21:44:54.5401934Z *** installing help indices 2021-05-17T21:44:54.5678073Z ** building package indices 2021-05-17T21:44:54.7983222Z ** installing vignettes 2021-05-17T21:44:54.7984852Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:54.9993842Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:44:55.0202421Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:55.2222945Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:55.2231644Z * DONE (utf8) 2021-05-17T21:44:55.4585316Z * installing *source* package ‘pkgconfig’ ... 2021-05-17T21:44:55.4597319Z ** package ‘pkgconfig’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:55.4598486Z ** using staged installation 2021-05-17T21:44:55.4727744Z ** R 2021-05-17T21:44:55.4759513Z ** inst 2021-05-17T21:44:55.4771062Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:44:56.1902015Z ** help 2021-05-17T21:44:56.1912029Z *** installing help indices 2021-05-17T21:44:56.1912794Z ** building package indices 2021-05-17T21:44:56.1913691Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:44:56.2169125Z ** testing if installed package can be loaded from final location 2021-05-17T21:44:56.4164452Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:44:56.4170448Z * DONE (pkgconfig) 2021-05-17T21:44:56.7449733Z * installing *source* package ‘fansi’ ... 2021-05-17T21:44:56.7491750Z ** package ‘fansi’ successfully unpacked and MD5 sums checked 2021-05-17T21:44:56.7493012Z ** using staged installation 2021-05-17T21:44:56.7655359Z ** libs 2021-05-17T21:44:56.7747824Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c assumptions.c -o assumptions.o 2021-05-17T21:44:56.8220393Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c has.c -o has.o 2021-05-17T21:44:56.8994001Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:44:56.9516034Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c nchar.c -o nchar.o 2021-05-17T21:44:57.0280373Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read.c -o read.o 2021-05-17T21:44:57.5373820Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rnchar.c -o rnchar.o 2021-05-17T21:44:57.5808536Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c state.c -o state.o 2021-05-17T21:44:57.9982049Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strip.c -o strip.o 2021-05-17T21:44:58.1576104Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c strsplit.c -o strsplit.o 2021-05-17T21:44:58.2085755Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tabs.c -o tabs.o 2021-05-17T21:44:58.3443616Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c tohtml.c -o tohtml.o 2021-05-17T21:44:58.6278919Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unhandled.c -o unhandled.o 2021-05-17T21:44:58.7474256Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unique.c -o unique.o 2021-05-17T21:44:58.8104414Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T21:44:58.8784956Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:44:59.0684646Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c wrap.c -o wrap.o 2021-05-17T21:44:59.4170053Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o fansi.so assumptions.o has.o init.o nchar.o read.o rnchar.o state.o strip.o strsplit.o tabs.o tohtml.o unhandled.o unique.o utf8.o utils.o wrap.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:44:59.4470847Z installing to /home/runner/work/_temp/Library/00LOCK-fansi/00new/fansi/libs 2021-05-17T21:44:59.4487199Z ** R 2021-05-17T21:44:59.4606391Z ** inst 2021-05-17T21:44:59.4621377Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:00.2378820Z ** help 2021-05-17T21:45:00.3112805Z *** installing help indices 2021-05-17T21:45:00.3545687Z ** building package indices 2021-05-17T21:45:00.6136742Z ** installing vignettes 2021-05-17T21:45:00.6197307Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:00.8229342Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:00.8423860Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:01.0490013Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:01.0498570Z * DONE (fansi) 2021-05-17T21:45:01.5711403Z * installing *source* package ‘diffobj’ ... 2021-05-17T21:45:01.5815621Z ** package ‘diffobj’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:01.5822726Z ** using staged installation 2021-05-17T21:45:01.6003673Z ** libs 2021-05-17T21:45:01.6055023Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff.c -o diff.o 2021-05-17T21:45:01.8339851Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diffobj.c -o diffobj.o 2021-05-17T21:45:01.9008640Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:01.9532118Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o diffobj.so diff.o diffobj.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:01.9784208Z installing to /home/runner/work/_temp/Library/00LOCK-diffobj/00new/diffobj/libs 2021-05-17T21:45:01.9793018Z ** R 2021-05-17T21:45:02.0295105Z ** inst 2021-05-17T21:45:02.0313340Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:10.3967930Z ** help 2021-05-17T21:45:10.6176436Z *** installing help indices 2021-05-17T21:45:10.7869871Z ** building package indices 2021-05-17T21:45:11.1224622Z ** installing vignettes 2021-05-17T21:45:11.1298654Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:11.4925035Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:11.5117294Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:11.9761974Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:11.9841146Z * DONE (diffobj) 2021-05-17T21:45:12.3259630Z * installing *source* package ‘ps’ ... 2021-05-17T21:45:12.3299676Z ** package ‘ps’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:12.3300736Z ** using staged installation 2021-05-17T21:45:12.5419204Z ** libs 2021-05-17T21:45:12.5474799Z gcc -g -O2 -Wall px.c -o px 2021-05-17T21:45:12.6920213Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:12.7682632Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-common.c -o api-common.o 2021-05-17T21:45:12.8419304Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c common.c -o common.o 2021-05-17T21:45:12.9179075Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c extra.c -o extra.o 2021-05-17T21:45:13.1019757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dummy.c -o dummy.o 2021-05-17T21:45:13.1586004Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c error-codes.c -o error-codes.o 2021-05-17T21:45:13.4699065Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c posix.c -o posix.o 2021-05-17T21:45:13.7071466Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-posix.c -o api-posix.o 2021-05-17T21:45:13.8263930Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c linux.c -o linux.o 2021-05-17T21:45:14.0193419Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c api-linux.c -o api-linux.o 2021-05-17T21:45:14.5246184Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ps.so init.o api-common.o common.o extra.o dummy.o error-codes.o posix.o api-posix.o linux.o api-linux.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:14.5585078Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-ps/00new/ps 2021-05-17T21:45:14.5586070Z ** R 2021-05-17T21:45:14.5693318Z ** inst 2021-05-17T21:45:14.5722000Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:15.8493574Z ** help 2021-05-17T21:45:16.0109543Z *** installing help indices 2021-05-17T21:45:16.1260968Z ** building package indices 2021-05-17T21:45:16.4543391Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:16.6555973Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:16.6743043Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:16.8914029Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:16.8926611Z * DONE (ps) 2021-05-17T21:45:17.1270808Z * installing *source* package ‘praise’ ... 2021-05-17T21:45:17.1290010Z ** package ‘praise’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:17.1294330Z ** using staged installation 2021-05-17T21:45:17.1413653Z ** R 2021-05-17T21:45:17.1457706Z ** inst 2021-05-17T21:45:17.1470246Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:17.3980616Z ** help 2021-05-17T21:45:17.4128874Z *** installing help indices 2021-05-17T21:45:17.4370655Z ** building package indices 2021-05-17T21:45:17.6529296Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:17.8527955Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:18.0493879Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:18.0498773Z * DONE (praise) 2021-05-17T21:45:18.4449993Z * installing *source* package ‘pkgload’ ... 2021-05-17T21:45:18.4503302Z ** package ‘pkgload’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:18.4504575Z ** using staged installation 2021-05-17T21:45:18.4669040Z ** R 2021-05-17T21:45:18.4787341Z ** inst 2021-05-17T21:45:18.4796513Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:19.5680847Z ** help 2021-05-17T21:45:19.6298991Z *** installing help indices 2021-05-17T21:45:19.6836143Z ** building package indices 2021-05-17T21:45:19.9476805Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:20.5371888Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:21.1664153Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:21.1665472Z * DONE (pkgload) 2021-05-17T21:45:21.4435474Z * installing *source* package ‘evaluate’ ... 2021-05-17T21:45:21.4458796Z ** package ‘evaluate’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:21.4460395Z ** using staged installation 2021-05-17T21:45:21.4660377Z ** R 2021-05-17T21:45:21.4719210Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:22.0989453Z ** help 2021-05-17T21:45:22.1321886Z *** installing help indices 2021-05-17T21:45:22.1700650Z ** building package indices 2021-05-17T21:45:22.4099116Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:22.6099955Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:22.8115038Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:22.8123728Z * DONE (evaluate) 2021-05-17T21:45:23.0499172Z * installing *source* package ‘ellipsis’ ... 2021-05-17T21:45:23.0511216Z ** package ‘ellipsis’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:23.0512866Z ** using staged installation 2021-05-17T21:45:23.0702161Z ** libs 2021-05-17T21:45:23.0760455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c dots.c -o dots.o 2021-05-17T21:45:23.1664915Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:23.2182182Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o ellipsis.so dots.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:23.2412096Z installing to /home/runner/work/_temp/Library/00LOCK-ellipsis/00new/ellipsis/libs 2021-05-17T21:45:23.2427511Z ** R 2021-05-17T21:45:23.2468724Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:23.5596044Z ** help 2021-05-17T21:45:23.5878388Z *** installing help indices 2021-05-17T21:45:23.6121437Z ** building package indices 2021-05-17T21:45:23.8321151Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:24.0512419Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:24.0764576Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:24.2978816Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:24.2986366Z * DONE (ellipsis) 2021-05-17T21:45:24.6289011Z * installing *source* package ‘digest’ ... 2021-05-17T21:45:24.6325496Z ** package ‘digest’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:24.6327987Z ** using staged installation 2021-05-17T21:45:24.6460372Z ** libs 2021-05-17T21:45:24.6525409Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c SpookyV2.cpp -o SpookyV2.o 2021-05-17T21:45:24.8538176Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c aes.c -o aes.o 2021-05-17T21:45:25.2407600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3.c -o blake3.o 2021-05-17T21:45:25.8563523Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_dispatch.c -o blake3_dispatch.o 2021-05-17T21:45:26.1504665Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c blake3_portable.c -o blake3_portable.o 2021-05-17T21:45:26.7926012Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c crc32.c -o crc32.o 2021-05-17T21:45:26.8771455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest.c -o digest.o 2021-05-17T21:45:27.1333029Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c digest2int.c -o digest2int.o 2021-05-17T21:45:27.1985500Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:27.2220759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c md5.c -o md5.o 2021-05-17T21:45:27.3794249Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c pmurhash.c -o pmurhash.o 2021-05-17T21:45:27.4354487Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c raes.c -o raes.o 2021-05-17T21:45:27.5202175Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha1.c -o sha1.o 2021-05-17T21:45:27.8641117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha2.c -o sha2.o 2021-05-17T21:45:27.9915219Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sha256.c -o sha256.o 2021-05-17T21:45:28.6378979Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c spooky_serialize.cpp -o spooky_serialize.o 2021-05-17T21:45:28.7716362Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c xxhash.c -o xxhash.o 2021-05-17T21:45:29.0744893Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o digest.so SpookyV2.o aes.o blake3.o blake3_dispatch.o blake3_portable.o crc32.o digest.o digest2int.o init.o md5.o pmurhash.o raes.o sha1.o sha2.o sha256.o spooky_serialize.o xxhash.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:29.1184426Z installing to /home/runner/work/_temp/Library/00LOCK-digest/00new/digest/libs 2021-05-17T21:45:29.1205499Z ** R 2021-05-17T21:45:29.1273578Z ** demo 2021-05-17T21:45:29.1280749Z ** inst 2021-05-17T21:45:29.1299719Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:29.8005214Z ** help 2021-05-17T21:45:29.8421477Z *** installing help indices 2021-05-17T21:45:29.8724512Z ** building package indices 2021-05-17T21:45:30.1080886Z ** installing vignettes 2021-05-17T21:45:30.1141200Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:30.3135792Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:30.3328290Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:30.5378821Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:30.5390627Z * DONE (digest) 2021-05-17T21:45:30.7920287Z * installing *source* package ‘brio’ ... 2021-05-17T21:45:30.7939548Z ** package ‘brio’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:30.7940777Z ** using staged installation 2021-05-17T21:45:30.8136434Z ** libs 2021-05-17T21:45:30.8189717Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c brio.c -o brio.o 2021-05-17T21:45:30.8604275Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c file_line_endings.c -o file_line_endings.o 2021-05-17T21:45:30.9157511Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:30.9643124Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file.c -o read_file.o 2021-05-17T21:45:31.0243900Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_file_raw.c -o read_file_raw.o 2021-05-17T21:45:31.0875551Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c read_lines.c -o read_lines.o 2021-05-17T21:45:31.1765343Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_file.c -o write_file.o 2021-05-17T21:45:31.2293934Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c write_lines.c -o write_lines.o 2021-05-17T21:45:31.2961992Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_lines.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:31.3224640Z installing to /home/runner/work/_temp/Library/00LOCK-brio/00new/brio/libs 2021-05-17T21:45:31.3235860Z ** R 2021-05-17T21:45:31.3276593Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:31.5933654Z ** help 2021-05-17T21:45:31.6157307Z *** installing help indices 2021-05-17T21:45:31.6389638Z ** building package indices 2021-05-17T21:45:31.8807336Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:32.0916902Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:32.1108129Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:32.3147229Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:32.3153119Z * DONE (brio) 2021-05-17T21:45:32.6577433Z * installing *source* package ‘xml2’ ... 2021-05-17T21:45:32.6618517Z ** package ‘xml2’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:32.6619649Z ** using staged installation 2021-05-17T21:45:32.6786606Z Found pkg-config cflags and libs! 2021-05-17T21:45:32.7699752Z Using PKG_CFLAGS=-I/usr/include/libxml2 2021-05-17T21:45:32.7701029Z Using PKG_LIBS=-lxml2 2021-05-17T21:45:32.8835005Z ** libs 2021-05-17T21:45:32.8891120Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c connection.cpp -o connection.o 2021-05-17T21:45:33.4886451Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:33.5449711Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_doc.cpp -o xml2_doc.o 2021-05-17T21:45:34.2194244Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_init.cpp -o xml2_init.o 2021-05-17T21:45:34.7271838Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_namespace.cpp -o xml2_namespace.o 2021-05-17T21:45:35.5765667Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_node.cpp -o xml2_node.o 2021-05-17T21:45:37.7752377Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_output.cpp -o xml2_output.o 2021-05-17T21:45:38.4119729Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_schema.cpp -o xml2_schema.o 2021-05-17T21:45:39.1059473Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_url.cpp -o xml2_url.o 2021-05-17T21:45:39.6707059Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -I/usr/include/libxml2 -DUCHAR_TYPE=wchar_t -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c xml2_xpath.cpp -o xml2_xpath.o 2021-05-17T21:45:40.2059430Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xml2.so connection.o init.o xml2_doc.o xml2_init.o xml2_namespace.o xml2_node.o xml2_output.o xml2_schema.o xml2_url.o xml2_xpath.o -lxml2 -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:40.2995451Z installing to /home/runner/work/_temp/Library/00LOCK-xml2/00new/xml2/libs 2021-05-17T21:45:40.3023678Z ** R 2021-05-17T21:45:40.3147040Z ** inst 2021-05-17T21:45:40.3163784Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:41.4881209Z ** help 2021-05-17T21:45:41.6005011Z *** installing help indices 2021-05-17T21:45:41.6656407Z ** building package indices 2021-05-17T21:45:41.9303737Z ** installing vignettes 2021-05-17T21:45:41.9405602Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:42.1561254Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:42.1765705Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:42.4101770Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:42.4115934Z * DONE (xml2) 2021-05-17T21:45:42.7414092Z * installing *source* package ‘xfun’ ... 2021-05-17T21:45:42.7451653Z ** package ‘xfun’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:42.7453068Z ** using staged installation 2021-05-17T21:45:42.7638738Z ** libs 2021-05-17T21:45:42.7718138Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:45:42.8882471Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:45:42.9515113Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o xfun.so base64.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:45:42.9944936Z installing to /home/runner/work/_temp/Library/00LOCK-xfun/00new/xfun/libs 2021-05-17T21:45:42.9946365Z ** R 2021-05-17T21:45:43.0123056Z ** inst 2021-05-17T21:45:43.0140028Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:45:44.8079400Z ** help 2021-05-17T21:45:44.9996549Z *** installing help indices 2021-05-17T21:45:45.1347665Z ** building package indices 2021-05-17T21:45:45.4605364Z ** installing vignettes 2021-05-17T21:45:45.4679148Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:45:45.6722139Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:45:45.7008743Z ** testing if installed package can be loaded from final location 2021-05-17T21:45:45.9365034Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:45:45.9381416Z * DONE (xfun) 2021-05-17T21:45:49.2397554Z * installing *source* package ‘stringi’ ... 2021-05-17T21:45:49.3615804Z ** package ‘stringi’ successfully unpacked and MD5 sums checked 2021-05-17T21:45:49.3617309Z ** using staged installation 2021-05-17T21:45:49.4959204Z checking for R_HOME... /opt/R/devel/lib/R 2021-05-17T21:45:49.4960845Z checking for R... /opt/R/devel/lib/R/bin/R 2021-05-17T21:45:49.6731426Z checking for endianness... little 2021-05-17T21:45:49.8457177Z checking for R >= 3.1.0 for C++11 use... yes 2021-05-17T21:45:50.0204168Z checking for R < 3.4.0 for CXX1X flag use... no 2021-05-17T21:45:50.0210552Z checking for cat... /usr/bin/cat 2021-05-17T21:45:50.2629849Z checking for local ICUDT_DIR... icu69/data 2021-05-17T21:45:50.2632342Z checking for gcc... gcc 2021-05-17T21:45:50.3261453Z checking whether the C compiler works... yes 2021-05-17T21:45:50.3262568Z checking for C compiler default output file name... a.out 2021-05-17T21:45:50.3639469Z checking for suffix of executables... 2021-05-17T21:45:50.4144053Z checking whether we are cross compiling... no 2021-05-17T21:45:50.4390126Z checking for suffix of object files... o 2021-05-17T21:45:50.4601902Z checking whether we are using the GNU C compiler... yes 2021-05-17T21:45:50.4820347Z checking whether gcc accepts -g... yes 2021-05-17T21:45:50.5180120Z checking for gcc option to accept ISO C89... none needed 2021-05-17T21:45:50.5398479Z checking how to run the C preprocessor... gcc -E 2021-05-17T21:45:50.5639061Z checking for grep that handles long lines and -e... /usr/bin/grep 2021-05-17T21:45:50.5655442Z checking for egrep... /usr/bin/grep -E 2021-05-17T21:45:50.6776584Z checking for ANSI C header files... yes 2021-05-17T21:45:50.7126643Z checking for sys/types.h... yes 2021-05-17T21:45:50.7492536Z checking for sys/stat.h... yes 2021-05-17T21:45:50.7885136Z checking for stdlib.h... yes 2021-05-17T21:45:50.8300300Z checking for string.h... yes 2021-05-17T21:45:50.8682074Z checking for memory.h... yes 2021-05-17T21:45:50.9065720Z checking for strings.h... yes 2021-05-17T21:45:50.9444413Z checking for inttypes.h... yes 2021-05-17T21:45:50.9805784Z checking for stdint.h... yes 2021-05-17T21:45:51.0248030Z checking for unistd.h... yes 2021-05-17T21:45:51.0675942Z checking elf.h usability... yes 2021-05-17T21:45:51.0784303Z checking elf.h presence... yes 2021-05-17T21:45:51.0785416Z checking for elf.h... yes 2021-05-17T21:45:51.1261733Z checking whether we are using the GNU C++ compiler... yes 2021-05-17T21:45:51.1478976Z checking whether g++ -std=gnu++11 accepts -g... yes 2021-05-17T21:45:51.5158337Z checking whether the C++ compiler supports the long long type... yes 2021-05-17T21:45:51.5424181Z checking whether the compiler implements namespaces... yes 2021-05-17T21:45:51.6969576Z checking whether the compiler supports Standard Template Library... yes 2021-05-17T21:45:52.3223362Z checking whether std::map is available... yes 2021-05-17T21:45:52.3246234Z checking for pkg-config... /usr/bin/pkg-config 2021-05-17T21:45:52.3295581Z checking with pkg-config for the system ICU4C... 66.1 2021-05-17T21:45:52.3320826Z checking for ICU4C >= 55... yes 2021-05-17T21:45:52.3392123Z checking for additional required CPPFLAGS, LDFLAGS, and LIBS... done 2021-05-17T21:45:52.6830885Z checking whether an ICU4C-based project can be built... yes 2021-05-17T21:45:52.7453024Z checking programmatically for sufficient U_ICU_VERSION_MAJOR_NUM... yes 2021-05-17T21:45:53.0868077Z checking programmatically if U_CHARSET_IS_UTF8 is defined and set... yes 2021-05-17T21:45:53.8228153Z checking the capabilities of the ICU data library (ucnv, uloc, utrans)... yes 2021-05-17T21:45:54.5509808Z checking the capabilities of the ICU data library (ucol)... yes 2021-05-17T21:45:54.5869084Z configure: creating ./config.status 2021-05-17T21:45:54.6815717Z config.status: creating src/Makevars 2021-05-17T21:45:54.6990922Z config.status: creating src/uconfig_local.h 2021-05-17T21:45:54.7169676Z config.status: creating src/install.libs.R 2021-05-17T21:45:54.7342787Z 2021-05-17T21:45:54.7343609Z *** stringi configure summary: 2021-05-17T21:45:54.7344200Z ICU_FOUND=1 2021-05-17T21:45:54.7344762Z STRINGI_CXXSTD=CXX_STD=CXX11 2021-05-17T21:45:54.7345844Z STRINGI_CFLAGS= -fpic 2021-05-17T21:45:54.7347197Z STRINGI_CPPFLAGS=-I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H 2021-05-17T21:45:54.7348126Z STRINGI_CXXFLAGS= -fpic 2021-05-17T21:45:54.7349252Z STRINGI_LDFLAGS=-L/usr/lib/x86_64-linux-gnu 2021-05-17T21:45:54.7350360Z STRINGI_LIBS=-licui18n -licuuc -licudata 2021-05-17T21:45:54.7350828Z 2021-05-17T21:45:54.7351379Z *** Compiler settings used: 2021-05-17T21:45:54.7351897Z CC=gcc 2021-05-17T21:45:54.7352536Z LD=g++ -std=gnu++14 2021-05-17T21:45:54.7353252Z CFLAGS=-g -O2 -fpic 2021-05-17T21:45:54.7354179Z CPPFLAGS=-I/usr/local/include -UDEBUG -DNDEBUG 2021-05-17T21:45:54.7354976Z CXX=g++ -std=gnu++11 2021-05-17T21:45:54.7355884Z CXXFLAGS=-g -O2 -fpic 2021-05-17T21:45:54.7356629Z LDFLAGS= 2021-05-17T21:45:54.7357119Z LIBS= 2021-05-17T21:45:54.7357478Z 2021-05-17T21:45:54.7754566Z ** libs 2021-05-17T21:45:54.7859677Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_brkiter.cpp -o stri_brkiter.o 2021-05-17T21:45:55.5726852Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_collator.cpp -o stri_collator.o 2021-05-17T21:45:56.3539583Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_common.cpp -o stri_common.o 2021-05-17T21:45:57.1412628Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_compare.cpp -o stri_compare.o 2021-05-17T21:45:58.0337933Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_base.cpp -o stri_container_base.o 2021-05-17T21:45:58.6473031Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_bytesearch.cpp -o stri_container_bytesearch.o 2021-05-17T21:45:59.7007959Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listint.cpp -o stri_container_listint.o 2021-05-17T21:46:00.3754029Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listraw.cpp -o stri_container_listraw.o 2021-05-17T21:46:01.0925985Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_listutf8.cpp -o stri_container_listutf8.o 2021-05-17T21:46:01.7725450Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_regex.cpp -o stri_container_regex.o 2021-05-17T21:46:02.5643965Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_usearch.cpp -o stri_container_usearch.o 2021-05-17T21:46:03.3465707Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf16.cpp -o stri_container_utf16.o 2021-05-17T21:46:04.2150161Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8.cpp -o stri_container_utf8.o 2021-05-17T21:46:05.0160474Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_container_utf8_indexable.cpp -o stri_container_utf8_indexable.o 2021-05-17T21:46:05.7752670Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_conversion.cpp -o stri_encoding_conversion.o 2021-05-17T21:46:06.9729882Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_detection.cpp -o stri_encoding_detection.o 2021-05-17T21:46:08.8315924Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_encoding_management.cpp -o stri_encoding_management.o 2021-05-17T21:46:09.6505367Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_escape.cpp -o stri_escape.o 2021-05-17T21:46:10.4461673Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_exception.cpp -o stri_exception.o 2021-05-17T21:46:11.2121608Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ICU_settings.cpp -o stri_ICU_settings.o 2021-05-17T21:46:11.7158582Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_join.cpp -o stri_join.o 2021-05-17T21:46:12.8323513Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_length.cpp -o stri_length.o 2021-05-17T21:46:13.6460370Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_pad.cpp -o stri_pad.o 2021-05-17T21:46:14.3994336Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_prepare_arg.cpp -o stri_prepare_arg.o 2021-05-17T21:46:15.3362007Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_random.cpp -o stri_random.o 2021-05-17T21:46:16.2642783Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_reverse.cpp -o stri_reverse.o 2021-05-17T21:46:16.9546259Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_count.cpp -o stri_search_class_count.o 2021-05-17T21:46:17.7398328Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_detect.cpp -o stri_search_class_detect.o 2021-05-17T21:46:18.5208853Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_extract.cpp -o stri_search_class_extract.o 2021-05-17T21:46:19.5504941Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_locate.cpp -o stri_search_class_locate.o 2021-05-17T21:46:20.5593743Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_replace.cpp -o stri_search_class_replace.o 2021-05-17T21:46:21.7907101Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_split.cpp -o stri_search_class_split.o 2021-05-17T21:46:22.7883144Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_startsendswith.cpp -o stri_search_class_startsendswith.o 2021-05-17T21:46:23.6706518Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_subset.cpp -o stri_search_class_subset.o 2021-05-17T21:46:24.5876597Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_class_trim.cpp -o stri_search_class_trim.o 2021-05-17T21:46:25.3882588Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_common.cpp -o stri_search_common.o 2021-05-17T21:46:26.2072359Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_count.cpp -o stri_search_coll_count.o 2021-05-17T21:46:26.9864291Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_detect.cpp -o stri_search_coll_detect.o 2021-05-17T21:46:27.7803951Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_extract.cpp -o stri_search_coll_extract.o 2021-05-17T21:46:28.7719270Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_locate.cpp -o stri_search_coll_locate.o 2021-05-17T21:46:29.7653116Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_replace.cpp -o stri_search_coll_replace.o 2021-05-17T21:46:31.7174493Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_split.cpp -o stri_search_coll_split.o 2021-05-17T21:46:31.8092575Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_startsendswith.cpp -o stri_search_coll_startsendswith.o 2021-05-17T21:46:32.7072959Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_coll_subset.cpp -o stri_search_coll_subset.o 2021-05-17T21:46:33.6328894Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_count.cpp -o stri_search_boundaries_count.o 2021-05-17T21:46:34.3397291Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_extract.cpp -o stri_search_boundaries_extract.o 2021-05-17T21:46:35.2037606Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_locate.cpp -o stri_search_boundaries_locate.o 2021-05-17T21:46:36.0574415Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_boundaries_split.cpp -o stri_search_boundaries_split.o 2021-05-17T21:46:36.9309098Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_count.cpp -o stri_search_fixed_count.o 2021-05-17T21:46:37.6795219Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_detect.cpp -o stri_search_fixed_detect.o 2021-05-17T21:46:38.3666059Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_extract.cpp -o stri_search_fixed_extract.o 2021-05-17T21:46:39.2788762Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_locate.cpp -o stri_search_fixed_locate.o 2021-05-17T21:46:40.1920062Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_replace.cpp -o stri_search_fixed_replace.o 2021-05-17T21:46:41.1720471Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_split.cpp -o stri_search_fixed_split.o 2021-05-17T21:46:42.1411710Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_subset.cpp -o stri_search_fixed_subset.o 2021-05-17T21:46:43.0312234Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_fixed_startsendswith.cpp -o stri_search_fixed_startsendswith.o 2021-05-17T21:46:43.8338376Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_in.cpp -o stri_search_in.o 2021-05-17T21:46:43.8490675Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_other_split.cpp -o stri_search_other_split.o 2021-05-17T21:46:44.9068122Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_count.cpp -o stri_search_regex_count.o 2021-05-17T21:46:45.6316820Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_detect.cpp -o stri_search_regex_detect.o 2021-05-17T21:46:46.3525459Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_extract.cpp -o stri_search_regex_extract.o 2021-05-17T21:46:47.3145686Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_locate.cpp -o stri_search_regex_locate.o 2021-05-17T21:46:48.2330530Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_match.cpp -o stri_search_regex_match.o 2021-05-17T21:46:49.3558854Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_replace.cpp -o stri_search_regex_replace.o 2021-05-17T21:46:50.1986344Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_split.cpp -o stri_search_regex_split.o 2021-05-17T21:46:51.1387450Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_search_regex_subset.cpp -o stri_search_regex_subset.o 2021-05-17T21:46:51.9675553Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sort.cpp -o stri_sort.o 2021-05-17T21:46:53.8368411Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stats.cpp -o stri_stats.o 2021-05-17T21:46:54.5979670Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_stringi.cpp -o stri_stringi.o 2021-05-17T21:46:55.2985777Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_sub.cpp -o stri_sub.o 2021-05-17T21:46:56.2956676Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_test.cpp -o stri_test.o 2021-05-17T21:46:56.9802300Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_zone.cpp -o stri_time_zone.o 2021-05-17T21:46:57.6878202Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_calendar.cpp -o stri_time_calendar.o 2021-05-17T21:46:58.6170133Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_symbols.cpp -o stri_time_symbols.o 2021-05-17T21:46:59.4861740Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_time_format.cpp -o stri_time_format.o 2021-05-17T21:47:00.4066614Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_casemap.cpp -o stri_trans_casemap.o 2021-05-17T21:47:01.2440819Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_other.cpp -o stri_trans_other.o 2021-05-17T21:47:02.1262710Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_normalization.cpp -o stri_trans_normalization.o 2021-05-17T21:47:02.9206713Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_trans_transliterate.cpp -o stri_trans_transliterate.o 2021-05-17T21:47:03.6526294Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_ucnv.cpp -o stri_ucnv.o 2021-05-17T21:47:04.4421218Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_uloc.cpp -o stri_uloc.o 2021-05-17T21:47:05.1325291Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_utils.cpp -o stri_utils.o 2021-05-17T21:47:05.9057765Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I. -UDEBUG -DNDEBUG -DU_HAVE_ELF_H -I/usr/local/include -fpic -fpic -g -O2 -c stri_wrap.cpp -o stri_wrap.o 2021-05-17T21:47:07.6248504Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o stringi.so stri_brkiter.o stri_collator.o stri_common.o stri_compare.o stri_container_base.o stri_container_bytesearch.o stri_container_listint.o stri_container_listraw.o stri_container_listutf8.o stri_container_regex.o stri_container_usearch.o stri_container_utf16.o stri_container_utf8.o stri_container_utf8_indexable.o stri_encoding_conversion.o stri_encoding_detection.o stri_encoding_management.o stri_escape.o stri_exception.o stri_ICU_settings.o stri_join.o stri_length.o stri_pad.o stri_prepare_arg.o stri_random.o stri_reverse.o stri_search_class_count.o stri_search_class_detect.o stri_search_class_extract.o stri_search_class_locate.o stri_search_class_replace.o stri_search_class_split.o stri_search_class_startsendswith.o stri_search_class_subset.o stri_search_class_trim.o stri_search_common.o stri_search_coll_count.o stri_search_coll_detect.o stri_search_coll_extract.o stri_search_coll_locate.o stri_search_coll_replace.o stri_search_coll_split.o stri_search_coll_startsendswith.o stri_search_coll_subset.o stri_search_boundaries_count.o stri_search_boundaries_extract.o stri_search_boundaries_locate.o stri_search_boundaries_split.o stri_search_fixed_count.o stri_search_fixed_detect.o stri_search_fixed_extract.o stri_search_fixed_locate.o stri_search_fixed_replace.o stri_search_fixed_split.o stri_search_fixed_subset.o stri_search_fixed_startsendswith.o stri_search_in.o stri_search_other_split.o stri_search_regex_count.o stri_search_regex_detect.o stri_search_regex_extract.o stri_search_regex_locate.o stri_search_regex_match.o stri_search_regex_replace.o stri_search_regex_split.o stri_search_regex_subset.o stri_sort.o stri_stats.o stri_stringi.o stri_sub.o stri_test.o stri_time_zone.o stri_time_calendar.o stri_time_symbols.o stri_time_format.o stri_trans_casemap.o stri_trans_other.o stri_trans_normalization.o stri_trans_transliterate.o stri_ucnv.o stri_uloc.o stri_utils.o stri_wrap.o -L/usr/lib/x86_64-linux-gnu -licui18n -licuuc -licudata -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:47:07.8673938Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-stringi/00new/stringi 2021-05-17T21:47:07.9756453Z ** R 2021-05-17T21:47:08.0171839Z ** inst 2021-05-17T21:47:08.0184439Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:09.5353400Z ** help 2021-05-17T21:47:10.0602864Z *** installing help indices 2021-05-17T21:47:10.3214903Z ** building package indices 2021-05-17T21:47:11.7285426Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:11.7287240Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:47:11.7288651Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:11.7289827Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:11.7290700Z * DONE (stringi) 2021-05-17T21:47:12.5711292Z * installing *source* package ‘Rcpp’ ... 2021-05-17T21:47:12.6119357Z ** package ‘Rcpp’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:12.6120031Z ** using staged installation 2021-05-17T21:47:12.6271555Z ** libs 2021-05-17T21:47:12.6326775Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c api.cpp -o api.o 2021-05-17T21:47:16.6466249Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c attributes.cpp -o attributes.o 2021-05-17T21:47:35.3364627Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c barrier.cpp -o barrier.o 2021-05-17T21:47:35.5974947Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c date.cpp -o date.o 2021-05-17T21:47:39.8834690Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c module.cpp -o module.o 2021-05-17T21:47:47.7452378Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include/ -I/usr/local/include -fpic -g -O2 -c rcpp_init.cpp -o rcpp_init.o 2021-05-17T21:47:51.4465658Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o Rcpp.so api.o attributes.o barrier.o date.o module.o rcpp_init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:47:51.6366079Z installing to /home/runner/work/_temp/Library/00LOCK-Rcpp/00new/Rcpp/libs 2021-05-17T21:47:51.6513266Z ** R 2021-05-17T21:47:51.6668238Z ** inst 2021-05-17T21:47:51.7165380Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:47:54.0373949Z ** help 2021-05-17T21:47:54.1558432Z *** installing help indices 2021-05-17T21:47:54.2335155Z ** building package indices 2021-05-17T21:47:54.5247945Z ** installing vignettes 2021-05-17T21:47:54.5323374Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:47:54.8501907Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:47:54.8773847Z ** testing if installed package can be loaded from final location 2021-05-17T21:47:55.2325842Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:47:56.2422196Z * DONE (Rcpp) 2021-05-17T21:47:56.2435128Z rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a 2021-05-17T21:47:56.2438768Z * installing *source* package ‘commonmark’ ... 2021-05-17T21:47:56.2440896Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions.c -o extensions.o 2021-05-17T21:47:56.2443675Z ** package ‘commonmark’ successfully unpacked and MD5 sums checked 2021-05-17T21:47:56.2445751Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:47:56.2447732Z ** using staged installation 2021-05-17T21:47:56.2449758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c wrapper.c -o wrapper.o 2021-05-17T21:47:56.2451824Z ** libs 2021-05-17T21:47:56.2454315Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark.c -o cmark/cmark.o 2021-05-17T21:47:56.2457375Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/node.c -o cmark/node.o 2021-05-17T21:47:56.2460376Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/iterator.c -o cmark/iterator.o 2021-05-17T21:47:56.2974368Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/blocks.c -o cmark/blocks.o 2021-05-17T21:47:56.8313723Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/inlines.c -o cmark/inlines.o 2021-05-17T21:47:57.6938172Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/scanners.c -o cmark/scanners.o 2021-05-17T21:47:59.8316192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/utf8.c -o cmark/utf8.o 2021-05-17T21:48:04.0111708Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/buffer.c -o cmark/buffer.o 2021-05-17T21:48:04.1614192Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/references.c -o cmark/references.o 2021-05-17T21:48:04.2174179Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/render.c -o cmark/render.o 2021-05-17T21:48:04.3335733Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/man.c -o cmark/man.o 2021-05-17T21:48:04.4366401Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/xml.c -o cmark/xml.o 2021-05-17T21:48:04.5409858Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/html.c -o cmark/html.o 2021-05-17T21:48:04.7817201Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/commonmark.c -o cmark/commonmark.o 2021-05-17T21:48:05.0135117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/latex.c -o cmark/latex.o 2021-05-17T21:48:05.1648316Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o 2021-05-17T21:48:05.2153435Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o 2021-05-17T21:48:05.2681188Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o 2021-05-17T21:48:05.3929492Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o 2021-05-17T21:48:05.4304856Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/arena.c -o cmark/arena.o 2021-05-17T21:48:05.5009483Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/linked_list.c -o cmark/linked_list.o 2021-05-17T21:48:05.5515486Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plugin.c -o cmark/plugin.o 2021-05-17T21:48:05.5987759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/registry.c -o cmark/registry.o 2021-05-17T21:48:05.6590922Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/syntax_extension.c -o cmark/syntax_extension.o 2021-05-17T21:48:05.7407119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/plaintext.c -o cmark/plaintext.o 2021-05-17T21:48:05.8590492Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/footnotes.c -o cmark/footnotes.o 2021-05-17T21:48:05.9152462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cmark/map.c -o cmark/map.o 2021-05-17T21:48:06.0041069Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/autolink.c -o extensions/autolink.o 2021-05-17T21:48:06.2096604Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/core-extensions.c -o extensions/core-extensions.o 2021-05-17T21:48:06.2467383Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/ext_scanners.c -o extensions/ext_scanners.o 2021-05-17T21:48:06.4108338Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/strikethrough.c -o extensions/strikethrough.o 2021-05-17T21:48:06.5058805Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/table.c -o extensions/table.o 2021-05-17T21:48:06.8376752Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c extensions/tagfilter.c -o extensions/tagfilter.o 2021-05-17T21:48:06.9011816Z ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/html.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o 2021-05-17T21:48:06.9153883Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:48:06.9675780Z installing to /home/runner/work/_temp/Library/00LOCK-commonmark/00new/commonmark/libs 2021-05-17T21:48:06.9746869Z ** R 2021-05-17T21:48:06.9777656Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:07.2556717Z ** help 2021-05-17T21:48:07.2710491Z *** installing help indices 2021-05-17T21:48:07.2900958Z ** building package indices 2021-05-17T21:48:07.5169387Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:07.7241259Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:48:07.7455084Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:07.9472805Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:07.9477654Z * DONE (commonmark) 2021-05-17T21:48:08.2403634Z * installing *source* package ‘brew’ ... 2021-05-17T21:48:08.2410727Z ** using staged installation 2021-05-17T21:48:08.2504267Z ** R 2021-05-17T21:48:08.2539082Z ** inst 2021-05-17T21:48:08.2573338Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:08.6753812Z ** help 2021-05-17T21:48:08.6943062Z *** installing help indices 2021-05-17T21:48:08.7144846Z ** building package indices 2021-05-17T21:48:08.9412471Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:09.1522710Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:09.3570914Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:09.3578242Z * DONE (brew) 2021-05-17T21:48:09.6267806Z * installing *source* package ‘sessioninfo’ ... 2021-05-17T21:48:09.6288285Z ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:09.6290845Z ** using staged installation 2021-05-17T21:48:09.6491048Z ** R 2021-05-17T21:48:09.6539251Z ** inst 2021-05-17T21:48:09.6550419Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:10.1960164Z ** help 2021-05-17T21:48:10.2136424Z *** installing help indices 2021-05-17T21:48:10.2356895Z ** building package indices 2021-05-17T21:48:10.4581186Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:10.7342905Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:10.9990121Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:10.9996471Z * DONE (sessioninfo) 2021-05-17T21:48:11.2462565Z * installing *source* package ‘prettyunits’ ... 2021-05-17T21:48:11.2477335Z ** package ‘prettyunits’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:11.2478650Z ** using staged installation 2021-05-17T21:48:11.2603340Z ** R 2021-05-17T21:48:11.2648024Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:11.6484151Z ** help 2021-05-17T21:48:11.6791342Z *** installing help indices 2021-05-17T21:48:11.7048898Z ** building package indices 2021-05-17T21:48:11.9356200Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:12.1510190Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:12.3701433Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:12.3708301Z * DONE (prettyunits) 2021-05-17T21:48:13.0385457Z * installing *source* package ‘vctrs’ ... 2021-05-17T21:48:13.0565921Z ** package ‘vctrs’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:13.0567467Z ** using staged installation 2021-05-17T21:48:13.0793205Z ** libs 2021-05-17T21:48:13.0879424Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c altrep-rle.c -o altrep-rle.o 2021-05-17T21:48:13.2324041Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg-counter.c -o arg-counter.o 2021-05-17T21:48:13.3365556Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c arg.c -o arg.o 2021-05-17T21:48:13.4386078Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c bind.c -o bind.o 2021-05-17T21:48:13.7354346Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c-unchop.c -o c-unchop.o 2021-05-17T21:48:13.8698667Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c c.c -o c.o 2021-05-17T21:48:14.0306098Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c callables.c -o callables.o 2021-05-17T21:48:14.1073484Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-bare.c -o cast-bare.o 2021-05-17T21:48:14.2400518Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast-dispatch.c -o cast-dispatch.o 2021-05-17T21:48:14.3310655Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c cast.c -o cast.o 2021-05-17T21:48:14.4939758Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c compare.c -o compare.o 2021-05-17T21:48:14.7374272Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c complete.c -o complete.o 2021-05-17T21:48:14.8821976Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c conditions.c -o conditions.o 2021-05-17T21:48:14.9851843Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dictionary.c -o dictionary.o 2021-05-17T21:48:15.2868047Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c dim.c -o dim.o 2021-05-17T21:48:15.3615103Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c equal.c -o equal.o 2021-05-17T21:48:15.8242871Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fields.c -o fields.o 2021-05-17T21:48:15.9291801Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c fill.c -o fill.o 2021-05-17T21:48:16.0760559Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c group.c -o group.o 2021-05-17T21:48:16.2145462Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c growable.c -o growable.o 2021-05-17T21:48:16.2807650Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c hash.c -o hash.o 2021-05-17T21:48:16.5584254Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:48:16.6348517Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c names.c -o names.o 2021-05-17T21:48:17.0112137Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-groups.c -o order-groups.o 2021-05-17T21:48:17.1037198Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-radix.c -o order-radix.o 2021-05-17T21:48:17.9702910Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-sortedness.c -o order-sortedness.o 2021-05-17T21:48:18.1588425Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-transform.c -o order-transform.o 2021-05-17T21:48:18.2457694Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c order-truelength.c -o order-truelength.o 2021-05-17T21:48:18.3346135Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c poly-op.c -o poly-op.o 2021-05-17T21:48:18.5383253Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy-restore.c -o proxy-restore.o 2021-05-17T21:48:18.6663185Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c proxy.c -o proxy.o 2021-05-17T21:48:18.8231126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c ptype2-dispatch.c -o ptype2-dispatch.o 2021-05-17T21:48:18.9505066Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c rep.c -o rep.o 2021-05-17T21:48:19.1054630Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c runs.c -o runs.o 2021-05-17T21:48:19.3969741Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c shape.c -o shape.o 2021-05-17T21:48:19.5099918Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size-common.c -o size-common.o 2021-05-17T21:48:19.6064998Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c size.c -o size.o 2021-05-17T21:48:19.7378882Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-array.c -o slice-array.o 2021-05-17T21:48:20.3066287Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign-array.c -o slice-assign-array.o 2021-05-17T21:48:20.7356145Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-assign.c -o slice-assign.o 2021-05-17T21:48:21.0186616Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice-chop.c -o slice-chop.o 2021-05-17T21:48:21.2213547Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c slice.c -o slice.o 2021-05-17T21:48:21.5431347Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c split.c -o split.o 2021-05-17T21:48:21.6077614Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript-loc.c -o subscript-loc.o 2021-05-17T21:48:21.8377475Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c subscript.c -o subscript.o 2021-05-17T21:48:22.0105463Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c translate.c -o translate.o 2021-05-17T21:48:22.1321009Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-data-frame.c -o type-data-frame.o 2021-05-17T21:48:22.5515770Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-date-time.c -o type-date-time.o 2021-05-17T21:48:22.7504291Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-factor.c -o type-factor.o 2021-05-17T21:48:23.7515250Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-info.c -o type-info.o 2021-05-17T21:48:23.7524624Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type-tibble.c -o type-tibble.o 2021-05-17T21:48:23.7526718Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type.c -o type.o 2021-05-17T21:48:23.7529000Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c type2.c -o type2.o 2021-05-17T21:48:23.7531252Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2-s3.c -o typeof2-s3.o 2021-05-17T21:48:23.7533081Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c typeof2.c -o typeof2.o 2021-05-17T21:48:23.7534945Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c unspecified.c -o unspecified.o 2021-05-17T21:48:23.7772051Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-dispatch.c -o utils-dispatch.o 2021-05-17T21:48:23.8613614Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils-rlang.c -o utils-rlang.o 2021-05-17T21:48:23.9261672Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:48:24.6623782Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -c version.c -o version.o 2021-05-17T21:48:24.7044084Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o vctrs.so altrep-rle.o arg-counter.o arg.o bind.o c-unchop.o c.o callables.o cast-bare.o cast-dispatch.o cast.o compare.o complete.o conditions.o dictionary.o dim.o equal.o fields.o fill.o group.o growable.o hash.o init.o names.o order-groups.o order-radix.o order-sortedness.o order-transform.o order-truelength.o poly-op.o proxy-restore.o proxy.o ptype2-dispatch.o rep.o runs.o shape.o size-common.o size.o slice-array.o slice-assign-array.o slice-assign.o slice-chop.o slice.o split.o subscript-loc.o subscript.o translate.o type-data-frame.o type-date-time.o type-factor.o type-info.o type-tibble.o type.o type2.o typeof2-s3.o typeof2.o unspecified.o utils-dispatch.o utils-rlang.o utils.o version.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:48:24.7713185Z installing to /home/runner/work/_temp/Library/00LOCK-vctrs/00new/vctrs/libs 2021-05-17T21:48:24.7753061Z ** R 2021-05-17T21:48:24.8151403Z ** inst 2021-05-17T21:48:24.8186247Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:28.3754332Z ** help 2021-05-17T21:48:28.7023452Z *** installing help indices 2021-05-17T21:48:28.9371620Z *** copying figures 2021-05-17T21:48:28.9384313Z ** building package indices 2021-05-17T21:48:29.3464169Z ** installing vignettes 2021-05-17T21:48:29.3644781Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:29.6367074Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:48:29.6578369Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:29.9898347Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:29.9938981Z * DONE (vctrs) 2021-05-17T21:48:30.3502744Z * installing *source* package ‘processx’ ... 2021-05-17T21:48:30.3544204Z ** package ‘processx’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:30.3547520Z ** using staged installation 2021-05-17T21:48:30.3762647Z ** libs 2021-05-17T21:48:30.3823468Z gcc -g -O2 -L/usr/local/lib -Wall tools/px.c -o tools/px 2021-05-17T21:48:30.5504199Z gcc -g -O2 -L/usr/local/lib supervisor/supervisor.c \ 2021-05-17T21:48:30.5505987Z supervisor/utils.c -o supervisor/supervisor 2021-05-17T21:48:30.7607377Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:48:30.8616598Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c client.c -o client.o 2021-05-17T21:48:30.9743535Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c errors.c -o errors.o 2021-05-17T21:48:31.0483764Z gcc -shared -L"/opt/R/devel/lib/R/lib" -L/usr/local/lib -o client.so base64.o client.o errors.o \ 2021-05-17T21:48:31.0485355Z -L"/opt/R/devel/lib/R/lib" -lR 2021-05-17T21:48:31.0784739Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:48:31.1641651Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c poll.c -o poll.o 2021-05-17T21:48:31.2874757Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-connection.c -o processx-connection.o 2021-05-17T21:48:31.7060022Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c processx-vector.c -o processx-vector.o 2021-05-17T21:48:31.8120764Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c create-time.c -o create-time.o 2021-05-17T21:48:31.9540310Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/childlist.c -o unix/childlist.o 2021-05-17T21:48:32.0674570Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/connection.c -o unix/connection.o 2021-05-17T21:48:32.1571754Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/processx.c -o unix/processx.o 2021-05-17T21:48:32.5294253Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/sigchld.c -o unix/sigchld.o 2021-05-17T21:48:32.6446017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/utils.c -o unix/utils.o 2021-05-17T21:48:32.7735702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c unix/named_pipe.c -o unix/named_pipe.o 2021-05-17T21:48:32.8420903Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cleancall.c -o cleancall.o 2021-05-17T21:48:32.9284015Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o processx.so init.o poll.o errors.o processx-connection.o processx-vector.o create-time.o base64.o unix/childlist.o unix/connection.o unix/processx.o unix/sigchld.o unix/utils.o unix/named_pipe.o cleancall.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:48:32.9624648Z installing via 'install.libs.R' to /home/runner/work/_temp/Library/00LOCK-processx/00new/processx 2021-05-17T21:48:32.9655956Z ** R 2021-05-17T21:48:32.9819685Z ** inst 2021-05-17T21:48:32.9831737Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:35.1710156Z ** help 2021-05-17T21:48:35.2569150Z *** installing help indices 2021-05-17T21:48:35.3098175Z ** building package indices 2021-05-17T21:48:35.5826980Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:35.8203133Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:48:35.8508907Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:36.1138987Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:36.1158107Z * DONE (processx) 2021-05-17T21:48:36.4397228Z * installing *source* package ‘markdown’ ... 2021-05-17T21:48:36.4426421Z ** package ‘markdown’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:36.4428602Z ** using staged installation 2021-05-17T21:48:36.4628625Z ** libs 2021-05-17T21:48:36.4689002Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rbase64.c -o Rbase64.o 2021-05-17T21:48:36.5485134Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o 2021-05-17T21:48:36.6104017Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c Rmarkdown.c -o Rmarkdown.o 2021-05-17T21:48:36.8137700Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c autolink.c -o autolink.o 2021-05-17T21:48:36.9409359Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c buffer.c -o buffer.o 2021-05-17T21:48:37.0333203Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_href_e.c -o houdini_href_e.o 2021-05-17T21:48:37.0812988Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c houdini_html_e.c -o houdini_html_e.o 2021-05-17T21:48:37.1322696Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html.c -o html.o 2021-05-17T21:48:37.3906637Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c html_smartypants.c -o html_smartypants.o 2021-05-17T21:48:37.5593817Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c markdown.c -o markdown.o 2021-05-17T21:48:38.8728245Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c stack.c -o stack.o 2021-05-17T21:48:38.9306853Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o markdown.so Rbase64.o Rinit.o Rmarkdown.o autolink.o buffer.o houdini_href_e.o houdini_html_e.o html.o html_smartypants.o markdown.o stack.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:48:38.9624261Z installing to /home/runner/work/_temp/Library/00LOCK-markdown/00new/markdown/libs 2021-05-17T21:48:38.9634469Z ** R 2021-05-17T21:48:38.9698912Z ** inst 2021-05-17T21:48:38.9720933Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:39.5157312Z ** help 2021-05-17T21:48:39.5604687Z *** installing help indices 2021-05-17T21:48:39.5945767Z ** building package indices 2021-05-17T21:48:39.8380240Z ** installing vignettes 2021-05-17T21:48:39.8446018Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:40.0630192Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:48:40.0833535Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:40.2961398Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:40.2972967Z * DONE (markdown) 2021-05-17T21:48:40.5570666Z * installing *source* package ‘highr’ ... 2021-05-17T21:48:40.5584208Z ** package ‘highr’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:40.5585900Z ** using staged installation 2021-05-17T21:48:40.5765687Z ** R 2021-05-17T21:48:40.5809080Z ** inst 2021-05-17T21:48:40.5823934Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:40.9945244Z ** help 2021-05-17T21:48:41.0085124Z *** installing help indices 2021-05-17T21:48:41.0257195Z ** building package indices 2021-05-17T21:48:41.2431272Z ** installing vignettes 2021-05-17T21:48:41.2490803Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:41.4613398Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:41.6744726Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:41.6752709Z * DONE (highr) 2021-05-17T21:48:42.0255636Z * installing *source* package ‘stringr’ ... 2021-05-17T21:48:42.0295050Z ** package ‘stringr’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:42.0296303Z ** using staged installation 2021-05-17T21:48:42.0501935Z ** R 2021-05-17T21:48:42.0612277Z ** data 2021-05-17T21:48:42.0619631Z *** moving datasets to lazyload DB 2021-05-17T21:48:42.0816061Z ** inst 2021-05-17T21:48:42.0835737Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:42.7484162Z ** help 2021-05-17T21:48:42.8428033Z *** installing help indices 2021-05-17T21:48:42.9126933Z *** copying figures 2021-05-17T21:48:42.9129953Z ** building package indices 2021-05-17T21:48:43.2151703Z ** installing vignettes 2021-05-17T21:48:43.2236204Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:43.4463779Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:43.6704941Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:43.6710100Z * DONE (stringr) 2021-05-17T21:48:43.9429693Z * installing *source* package ‘rversions’ ... 2021-05-17T21:48:43.9442580Z ** package ‘rversions’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:43.9443773Z ** using staged installation 2021-05-17T21:48:43.9614036Z ** R 2021-05-17T21:48:43.9656096Z ** inst 2021-05-17T21:48:43.9671173Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:44.3785820Z ** help 2021-05-17T21:48:44.4056449Z *** installing help indices 2021-05-17T21:48:44.4307448Z *** copying figures 2021-05-17T21:48:44.4311337Z ** building package indices 2021-05-17T21:48:44.6938938Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:44.9471480Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:45.2022993Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:45.2029171Z * DONE (rversions) 2021-05-17T21:48:45.7488653Z * installing *source* package ‘pillar’ ... 2021-05-17T21:48:45.7600754Z ** package ‘pillar’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:45.7602151Z ** using staged installation 2021-05-17T21:48:45.7824967Z ** R 2021-05-17T21:48:45.8034846Z ** inst 2021-05-17T21:48:45.8078300Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:48.1843063Z ** help 2021-05-17T21:48:48.2919945Z *** installing help indices 2021-05-17T21:48:48.3730612Z *** copying figures 2021-05-17T21:48:48.3740707Z ** building package indices 2021-05-17T21:48:48.6661563Z ** installing vignettes 2021-05-17T21:48:48.6754391Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:49.0221759Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:49.4255220Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:49.4282963Z * DONE (pillar) 2021-05-17T21:48:49.7624254Z * installing *source* package ‘callr’ ... 2021-05-17T21:48:49.7657319Z ** package ‘callr’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:49.7658523Z ** using staged installation 2021-05-17T21:48:49.7838630Z ** R 2021-05-17T21:48:49.8011934Z ** inst 2021-05-17T21:48:49.8021644Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:48:54.1630357Z ** help 2021-05-17T21:48:54.3014673Z *** installing help indices 2021-05-17T21:48:54.3877540Z ** building package indices 2021-05-17T21:48:54.6989351Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:48:54.9308304Z ** testing if installed package can be loaded from final location 2021-05-17T21:48:55.2507540Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:48:55.2543365Z * DONE (callr) 2021-05-17T21:48:55.8570496Z * installing *source* package ‘knitr’ ... 2021-05-17T21:48:55.8698006Z ** package ‘knitr’ successfully unpacked and MD5 sums checked 2021-05-17T21:48:55.8699483Z ** using staged installation 2021-05-17T21:48:55.9193823Z ** R 2021-05-17T21:48:55.9657970Z ** demo 2021-05-17T21:48:55.9668311Z ** inst 2021-05-17T21:48:55.9784410Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:01.5398240Z ** help 2021-05-17T21:49:01.7625336Z *** installing help indices 2021-05-17T21:49:01.9153306Z ** building package indices 2021-05-17T21:49:02.2703442Z ** installing vignettes 2021-05-17T21:49:02.2808421Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:02.5113020Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:02.8435026Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:02.8498642Z * DONE (knitr) 2021-05-17T21:49:03.1049211Z * installing *source* package ‘xopen’ ... 2021-05-17T21:49:03.1059345Z ** package ‘xopen’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:03.1060957Z ** using staged installation 2021-05-17T21:49:03.1239849Z ** R 2021-05-17T21:49:03.1269003Z ** inst 2021-05-17T21:49:03.1278571Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:03.4122064Z ** help 2021-05-17T21:49:03.4258354Z *** installing help indices 2021-05-17T21:49:03.4512387Z ** building package indices 2021-05-17T21:49:03.6646370Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:03.8803755Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:04.0831209Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:04.0843848Z * DONE (xopen) 2021-05-17T21:49:04.5962437Z * installing *source* package ‘tibble’ ... 2021-05-17T21:49:04.6072413Z ** package ‘tibble’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:04.6073666Z ** using staged installation 2021-05-17T21:49:04.6329443Z ** libs 2021-05-17T21:49:04.6386101Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c attributes.c -o attributes.o 2021-05-17T21:49:04.6924724Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c coerce.c -o coerce.o 2021-05-17T21:49:04.7667658Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:49:04.8101031Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c matrixToDataFrame.c -o matrixToDataFrame.o 2021-05-17T21:49:04.9314142Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:49:04.9584988Z installing to /home/runner/work/_temp/Library/00LOCK-tibble/00new/tibble/libs 2021-05-17T21:49:04.9586457Z ** R 2021-05-17T21:49:04.9781178Z ** inst 2021-05-17T21:49:04.9824110Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:07.4213292Z ** help 2021-05-17T21:49:07.5099707Z *** installing help indices 2021-05-17T21:49:07.5712425Z *** copying figures 2021-05-17T21:49:07.5719210Z ** building package indices 2021-05-17T21:49:07.8343364Z ** installing vignettes 2021-05-17T21:49:07.8411339Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:08.2641307Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:49:08.2845674Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:08.7340457Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:08.7362768Z * DONE (tibble) 2021-05-17T21:49:09.0380811Z * installing *source* package ‘pkgbuild’ ... 2021-05-17T21:49:09.0402936Z ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:09.0404011Z ** using staged installation 2021-05-17T21:49:09.0585545Z ** R 2021-05-17T21:49:09.0679839Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:10.6437993Z ** help 2021-05-17T21:49:10.6884518Z *** installing help indices 2021-05-17T21:49:10.7326792Z ** building package indices 2021-05-17T21:49:10.9759986Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:11.2789007Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:11.6028138Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:11.6042204Z * DONE (pkgbuild) 2021-05-17T21:49:12.0838126Z * installing *source* package ‘roxygen2’ ... 2021-05-17T21:49:12.0919758Z ** package ‘roxygen2’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:12.0920921Z ** using staged installation 2021-05-17T21:49:12.1165104Z ** libs 2021-05-17T21:49:12.1226232Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-17T21:49:17.6377026Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c escapeExamples.cpp -o escapeExamples.o 2021-05-17T21:49:21.3155735Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c isComplete.cpp -o isComplete.o 2021-05-17T21:49:24.9933607Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c leadingSpaces.cpp -o leadingSpaces.o 2021-05-17T21:49:28.6886049Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c parser2.cpp -o parser2.o 2021-05-17T21:49:34.5551664Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c wrapUsage.cpp -o wrapUsage.o 2021-05-17T21:49:38.4391641Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o roxygen2.so RcppExports.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:49:38.5584721Z installing to /home/runner/work/_temp/Library/00LOCK-roxygen2/00new/roxygen2/libs 2021-05-17T21:49:38.5633790Z ** R 2021-05-17T21:49:38.5979975Z ** inst 2021-05-17T21:49:38.6001755Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:43.8184474Z ** help 2021-05-17T21:49:43.9068040Z *** installing help indices 2021-05-17T21:49:43.9704633Z *** copying figures 2021-05-17T21:49:43.9710172Z ** building package indices 2021-05-17T21:49:44.2714547Z ** installing vignettes 2021-05-17T21:49:44.2852459Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:44.7311774Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:49:44.7526397Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:45.2922580Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:45.2968726Z * DONE (roxygen2) 2021-05-17T21:49:45.5679793Z * installing *source* package ‘rematch2’ ... 2021-05-17T21:49:45.5693156Z ** package ‘rematch2’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:45.5695919Z ** using staged installation 2021-05-17T21:49:45.5863367Z ** R 2021-05-17T21:49:45.5918401Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:46.1986993Z ** help 2021-05-17T21:49:46.2348579Z *** installing help indices 2021-05-17T21:49:46.2604869Z ** building package indices 2021-05-17T21:49:46.4895552Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:46.9190314Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:47.3473532Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:47.3479219Z * DONE (rematch2) 2021-05-17T21:49:47.6650789Z * installing *source* package ‘rcmdcheck’ ... 2021-05-17T21:49:47.6678712Z ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:47.6681621Z ** using staged installation 2021-05-17T21:49:47.6846219Z ** R 2021-05-17T21:49:47.6944612Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:49.2007439Z ** help 2021-05-17T21:49:49.2426155Z *** installing help indices 2021-05-17T21:49:49.2810050Z ** building package indices 2021-05-17T21:49:49.5280197Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:49.8784390Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:50.2223970Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:50.2243904Z * DONE (rcmdcheck) 2021-05-17T21:49:50.5131182Z * installing *source* package ‘waldo’ ... 2021-05-17T21:49:50.5151275Z ** package ‘waldo’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:50.5152963Z ** using staged installation 2021-05-17T21:49:50.5326285Z ** R 2021-05-17T21:49:50.5390552Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:49:51.4612949Z ** help 2021-05-17T21:49:51.4789123Z *** installing help indices 2021-05-17T21:49:51.5011434Z *** copying figures 2021-05-17T21:49:51.5013569Z ** building package indices 2021-05-17T21:49:51.7340978Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:49:52.0253270Z ** testing if installed package can be loaded from final location 2021-05-17T21:49:52.3222799Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:49:52.3232812Z * DONE (waldo) 2021-05-17T21:49:52.9604862Z * installing *source* package ‘testthat’ ... 2021-05-17T21:49:52.9740281Z ** package ‘testthat’ successfully unpacked and MD5 sums checked 2021-05-17T21:49:52.9741498Z ** using staged installation 2021-05-17T21:49:53.0023898Z ** libs 2021-05-17T21:49:53.0076986Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:49:53.0608590Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T21:49:53.1265449Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-catch.cpp -o test-catch.o 2021-05-17T21:49:54.0731102Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-example.cpp -o test-example.o 2021-05-17T21:49:54.8185383Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -fpic -g -O2 -c test-runner.cpp -o test-runner.o 2021-05-17T21:50:14.6740130Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:50:14.8581456Z installing to /home/runner/work/_temp/Library/00LOCK-testthat/00new/testthat/libs 2021-05-17T21:50:14.8702096Z ** R 2021-05-17T21:50:14.9115816Z ** inst 2021-05-17T21:50:14.9157239Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:50:28.0875556Z ** help 2021-05-17T21:50:28.3640134Z *** installing help indices 2021-05-17T21:50:28.5822742Z *** copying figures 2021-05-17T21:50:28.5831265Z ** building package indices 2021-05-17T21:50:28.9663738Z ** installing vignettes 2021-05-17T21:50:28.9789572Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:50:29.2333702Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:50:29.2591033Z ** testing if installed package can be loaded from final location 2021-05-17T21:50:29.7752313Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:50:29.7857497Z * DONE (testthat) 2021-05-17T21:50:30.2964010Z * installing *source* package ‘devtools’ ... 2021-05-17T21:50:30.3025359Z ** package ‘devtools’ successfully unpacked and MD5 sums checked 2021-05-17T21:50:30.3026485Z ** using staged installation 2021-05-17T21:50:30.3390143Z ** R 2021-05-17T21:50:30.3550985Z ** inst 2021-05-17T21:50:30.3562063Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:50:32.5702459Z ** help 2021-05-17T21:50:32.6988836Z *** installing help indices 2021-05-17T21:50:32.7922293Z *** copying figures 2021-05-17T21:50:32.7925089Z ** building package indices 2021-05-17T21:50:33.0912162Z ** installing vignettes 2021-05-17T21:50:33.1003781Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:50:33.9756307Z ** testing if installed package can be loaded from final location 2021-05-17T21:50:34.8764158Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:50:34.8784105Z * DONE (devtools) 2021-05-17T21:50:34.8917355Z 2021-05-17T21:50:34.8918340Z The downloaded source packages are in 2021-05-17T21:50:34.8923084Z ‘/tmp/RtmpWkFgDz/downloaded_packages’ 2021-05-17T21:50:35.6178096Z Downloading GitHub repo muschellij2/desc@HEAD 2021-05-17T21:50:37.0864583Z 2021-05-17T21:50:37.4164034Z 2021-05-17T21:50:37.4167400Z checking for file ‘/tmp/RtmpWkFgDz/remotes72dc134e5d78/muschellij2-desc-7be86f2/DESCRIPTION’ ... 2021-05-17T21:50:37.4211044Z 2021-05-17T21:50:37.4213009Z ✔ checking for file ‘/tmp/RtmpWkFgDz/remotes72dc134e5d78/muschellij2-desc-7be86f2/DESCRIPTION’ 2021-05-17T21:50:37.4328722Z 2021-05-17T21:50:37.4329605Z 2021-05-17T21:50:37.4330629Z ─ preparing ‘desc’: 2021-05-17T21:50:37.4331222Z 2021-05-17T21:50:37.4332083Z 2021-05-17T21:50:37.4459480Z checking DESCRIPTION meta-information ... 2021-05-17T21:50:37.4485268Z 2021-05-17T21:50:37.4487283Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:50:37.5304724Z 2021-05-17T21:50:37.5446120Z 2021-05-17T21:50:37.5448851Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:50:37.5457912Z 2021-05-17T21:50:37.5481894Z 2021-05-17T21:50:37.5484107Z ─ checking for empty or unneeded directories 2021-05-17T21:50:37.5487122Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:50:37.5511747Z ─ building ‘desc_1.2.0.9000.tar.gz’ 2021-05-17T21:50:37.6850706Z 2021-05-17T21:50:37.6854666Z 2021-05-17T21:50:37.6856516Z 2021-05-17T21:50:37.6962421Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:50:38.0432431Z (as ‘lib’ is unspecified) 2021-05-17T21:50:38.0433287Z * installing *source* package ‘desc’ ... 2021-05-17T21:50:38.0476432Z ** using staged installation 2021-05-17T21:50:38.0717112Z ** R 2021-05-17T21:50:38.0875964Z ** inst 2021-05-17T21:50:38.0896054Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:50:40.1542985Z ** help 2021-05-17T21:50:40.7900874Z *** installing help indices 2021-05-17T21:50:40.7909875Z ** building package indices 2021-05-17T21:50:40.7911455Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:50:40.9679934Z ** testing if installed package can be loaded from final location 2021-05-17T21:50:41.2082058Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:50:41.2097024Z * DONE (desc) 2021-05-17T21:50:41.4318309Z 2021-05-17T21:50:41.4319025Z 2021-05-17T21:50:41.4334143Z checking for file ‘/tmp/RtmpWkFgDz/remotes72dc327d34b/muschellij2-ghtravis-0b26809/DESCRIPTION’ ... 2021-05-17T21:50:41.4357854Z 2021-05-17T21:50:41.4359803Z ✔ checking for file ‘/tmp/RtmpWkFgDz/remotes72dc327d34b/muschellij2-ghtravis-0b26809/DESCRIPTION’ 2021-05-17T21:50:41.4457637Z 2021-05-17T21:50:41.4458507Z 2021-05-17T21:50:41.4459743Z ─ preparing ‘ghtravis’: 2021-05-17T21:50:41.4460377Z 2021-05-17T21:50:41.4460957Z 2021-05-17T21:50:41.4551247Z checking DESCRIPTION meta-information ... 2021-05-17T21:50:41.4579764Z 2021-05-17T21:50:41.4581851Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:50:41.5015799Z 2021-05-17T21:50:41.5040324Z 2021-05-17T21:50:41.5043478Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:50:41.5051301Z 2021-05-17T21:50:41.5076423Z 2021-05-17T21:50:41.5078405Z ─ checking for empty or unneeded directories 2021-05-17T21:50:41.5081489Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:50:41.5174719Z 2021-05-17T21:50:41.5199802Z 2021-05-17T21:50:41.5202499Z ─ building ‘ghtravis_0.15.1.tar.gz’ 2021-05-17T21:50:41.5473771Z 2021-05-17T21:50:41.5476727Z 2021-05-17T21:50:41.5478732Z 2021-05-17T21:50:41.5821862Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:50:41.5825100Z (as ‘lib’ is unspecified) 2021-05-17T21:50:41.8508356Z * installing *source* package ‘ghtravis’ ... 2021-05-17T21:50:41.8510624Z ** using staged installation 2021-05-17T21:50:41.8684358Z ** R 2021-05-17T21:50:41.8787637Z ** inst 2021-05-17T21:50:41.8799116Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:50:43.4451172Z ** help 2021-05-17T21:50:43.5154446Z *** installing help indices 2021-05-17T21:50:43.5696288Z ** building package indices 2021-05-17T21:50:43.8365621Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:50:44.7795266Z ** testing if installed package can be loaded from final location 2021-05-17T21:50:45.6881524Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:50:45.6892976Z * DONE (ghtravis) 2021-05-17T21:50:45.6990209Z Using github PAT from envvar GITHUB_PAT 2021-05-17T21:50:46.5499445Z Downloading GitHub repo muschellij2/aghast@HEAD 2021-05-17T21:50:47.7811295Z 2021-05-17T21:50:47.7813025Z tidyselect (NA -> 1.1.1) [CRAN] 2021-05-17T21:50:47.7814233Z generics (NA -> 0.1.0) [CRAN] 2021-05-17T21:50:47.7815199Z cpp11 (NA -> 0.2.7) [CRAN] 2021-05-17T21:50:47.7816278Z dplyr (NA -> 1.0.6) [CRAN] 2021-05-17T21:50:47.7817225Z tidyr (NA -> 1.1.3) [CRAN] 2021-05-17T21:50:47.7818713Z Installing 5 packages: tidyselect, generics, cpp11, dplyr, tidyr 2021-05-17T21:50:47.7829751Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:50:47.7831031Z (as ‘lib’ is unspecified) 2021-05-17T21:51:04.3244209Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyselect_1.1.1.tar.gz' 2021-05-17T21:51:05.5884299Z Content type 'binary/octet-stream' length 92124 bytes (89 KB) 2021-05-17T21:51:05.5979505Z ================================================== 2021-05-17T21:51:05.5980462Z downloaded 89 KB 2021-05-17T21:51:05.5980889Z 2021-05-17T21:51:05.6019303Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/generics_0.1.0.tar.gz' 2021-05-17T21:51:06.1098196Z Content type 'binary/octet-stream' length 118869 bytes (116 KB) 2021-05-17T21:51:06.1189558Z ================================================== 2021-05-17T21:51:06.1190748Z downloaded 116 KB 2021-05-17T21:51:06.1191280Z 2021-05-17T21:51:06.1231568Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/cpp11_0.2.7.tar.gz' 2021-05-17T21:51:06.8123533Z Content type 'binary/octet-stream' length 200157 bytes (195 KB) 2021-05-17T21:51:06.8349617Z ================================================== 2021-05-17T21:51:06.8351252Z downloaded 195 KB 2021-05-17T21:51:06.8351850Z 2021-05-17T21:51:06.8394532Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/dplyr_1.0.6.tar.gz' 2021-05-17T21:51:07.2684677Z Content type 'binary/octet-stream' length 954544 bytes (932 KB) 2021-05-17T21:51:07.2924411Z ================================================== 2021-05-17T21:51:07.2925599Z downloaded 932 KB 2021-05-17T21:51:07.2926162Z 2021-05-17T21:51:07.2971063Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tidyr_1.1.3.tar.gz' 2021-05-17T21:51:07.9971503Z Content type 'binary/octet-stream' length 706784 bytes (690 KB) 2021-05-17T21:51:08.1033546Z ================================================== 2021-05-17T21:51:08.1034104Z downloaded 690 KB 2021-05-17T21:51:08.1034878Z 2021-05-17T21:51:08.4338169Z * installing *source* package ‘tidyselect’ ... 2021-05-17T21:51:08.4373876Z ** package ‘tidyselect’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:08.4375177Z ** using staged installation 2021-05-17T21:51:08.4579901Z ** R 2021-05-17T21:51:08.4690740Z ** inst 2021-05-17T21:51:08.4705959Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:09.7426735Z ** help 2021-05-17T21:51:09.8098733Z *** installing help indices 2021-05-17T21:51:09.8620671Z ** building package indices 2021-05-17T21:51:10.1183586Z ** installing vignettes 2021-05-17T21:51:10.1238469Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:10.4183984Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:10.7355740Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:10.7368317Z * DONE (tidyselect) 2021-05-17T21:51:11.0548809Z * installing *source* package ‘generics’ ... 2021-05-17T21:51:11.0581201Z ** package ‘generics’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:11.0583678Z ** using staged installation 2021-05-17T21:51:11.0751988Z ** R 2021-05-17T21:51:11.0820023Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:11.4439334Z ** help 2021-05-17T21:51:11.5864140Z *** installing help indices 2021-05-17T21:51:11.6446049Z ** building package indices 2021-05-17T21:51:11.9100240Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:12.1153301Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:12.3220341Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:12.3229879Z * DONE (generics) 2021-05-17T21:51:12.6377372Z * installing *source* package ‘cpp11’ ... 2021-05-17T21:51:12.6412848Z ** package ‘cpp11’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:12.6414325Z ** using staged installation 2021-05-17T21:51:12.6639340Z ** R 2021-05-17T21:51:12.6689303Z ** inst 2021-05-17T21:51:12.6725503Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:13.1424826Z ** help 2021-05-17T21:51:13.1661889Z *** installing help indices 2021-05-17T21:51:13.1877895Z ** building package indices 2021-05-17T21:51:13.4072293Z ** installing vignettes 2021-05-17T21:51:13.4132183Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:13.6292913Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:13.8375678Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:13.8387361Z * DONE (cpp11) 2021-05-17T21:51:14.4655618Z * installing *source* package ‘dplyr’ ... 2021-05-17T21:51:14.4793399Z ** package ‘dplyr’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:14.4795320Z ** using staged installation 2021-05-17T21:51:14.5060764Z ** libs 2021-05-17T21:51:14.5114530Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c chop.cpp -o chop.o 2021-05-17T21:51:14.6704082Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c filter.cpp -o filter.o 2021-05-17T21:51:14.8576721Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c funs.cpp -o funs.o 2021-05-17T21:51:15.8010487Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_by.cpp -o group_by.o 2021-05-17T21:51:15.8013592Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c group_data.cpp -o group_data.o 2021-05-17T21:51:15.8015231Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c imports.cpp -o imports.o 2021-05-17T21:51:15.9292877Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.cpp -o init.o 2021-05-17T21:51:16.0650449Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mask.cpp -o mask.o 2021-05-17T21:51:16.2168939Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mutate.cpp -o mutate.o 2021-05-17T21:51:16.3593455Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c slice.cpp -o slice.o 2021-05-17T21:51:16.4684726Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c summarise.cpp -o summarise.o 2021-05-17T21:51:16.6535428Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o dplyr.so chop.o filter.o funs.o group_by.o group_data.o imports.o init.o mask.o mutate.o slice.o summarise.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:51:16.7191769Z installing to /home/runner/work/_temp/Library/00LOCK-dplyr/00new/dplyr/libs 2021-05-17T21:51:16.7211250Z ** R 2021-05-17T21:51:16.7750126Z ** data 2021-05-17T21:51:16.7758200Z *** moving datasets to lazyload DB 2021-05-17T21:51:16.8796271Z ** inst 2021-05-17T21:51:16.8825593Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:22.7703466Z ** help 2021-05-17T21:51:23.3575601Z *** installing help indices 2021-05-17T21:51:23.6422052Z *** copying figures 2021-05-17T21:51:23.6432984Z ** building package indices 2021-05-17T21:51:24.0703349Z ** installing vignettes 2021-05-17T21:51:24.0880480Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:24.6413294Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:51:24.6605932Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:25.3231561Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:25.3282884Z * DONE (dplyr) 2021-05-17T21:51:25.7744880Z * installing *source* package ‘tidyr’ ... 2021-05-17T21:51:25.7824107Z ** package ‘tidyr’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:25.7826761Z ** using staged installation 2021-05-17T21:51:25.8059627Z ** libs 2021-05-17T21:51:25.8124268Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c cpp11.cpp -o cpp11.o 2021-05-17T21:51:27.0043350Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c fill.cpp -o fill.o 2021-05-17T21:51:27.4171659Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c melt.cpp -o melt.o 2021-05-17T21:51:29.4181221Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/cpp11/include' -I/usr/local/include -fpic -g -O2 -c simplifyPieces.cpp -o simplifyPieces.o 2021-05-17T21:51:30.9705126Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o tidyr.so cpp11.o fill.o melt.o simplifyPieces.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:51:31.0542122Z installing to /home/runner/work/_temp/Library/00LOCK-tidyr/00new/tidyr/libs 2021-05-17T21:51:31.0567555Z ** R 2021-05-17T21:51:31.0784110Z ** data 2021-05-17T21:51:31.0797835Z *** moving datasets to lazyload DB 2021-05-17T21:51:31.2854930Z ** inst 2021-05-17T21:51:31.2884130Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:33.4331543Z ** help 2021-05-17T21:51:33.5654939Z *** installing help indices 2021-05-17T21:51:33.6556566Z *** copying figures 2021-05-17T21:51:33.6565048Z ** building package indices 2021-05-17T21:51:33.9543201Z ** installing vignettes 2021-05-17T21:51:33.9657265Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:34.5401840Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:51:34.5609006Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:35.1473839Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:35.1494144Z * DONE (tidyr) 2021-05-17T21:51:35.1600309Z 2021-05-17T21:51:35.1601252Z The downloaded source packages are in 2021-05-17T21:51:35.1602726Z ‘/tmp/RtmpWkFgDz/downloaded_packages’ 2021-05-17T21:51:35.3797916Z 2021-05-17T21:51:35.3815693Z checking for file ‘/tmp/RtmpWkFgDz/remotes72dc62bc266/muschellij2-aghast-0c3b853/DESCRIPTION’ ... 2021-05-17T21:51:35.3836310Z 2021-05-17T21:51:35.3838169Z ✔ checking for file ‘/tmp/RtmpWkFgDz/remotes72dc62bc266/muschellij2-aghast-0c3b853/DESCRIPTION’ 2021-05-17T21:51:35.3884474Z 2021-05-17T21:51:35.3915053Z 2021-05-17T21:51:35.3917079Z ─ preparing ‘aghast’: 2021-05-17T21:51:35.3925440Z 2021-05-17T21:51:35.3927445Z 2021-05-17T21:51:35.4017196Z checking DESCRIPTION meta-information ... 2021-05-17T21:51:35.4041934Z 2021-05-17T21:51:35.4044786Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:51:35.4346210Z 2021-05-17T21:51:35.4370151Z 2021-05-17T21:51:35.4373082Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:51:35.4383349Z 2021-05-17T21:51:35.4408491Z 2021-05-17T21:51:35.4410820Z ─ checking for empty or unneeded directories 2021-05-17T21:51:35.4414422Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:51:35.4444986Z 2021-05-17T21:51:35.4469236Z 2021-05-17T21:51:35.4471590Z ─ building ‘aghast_0.2.1.tar.gz’ 2021-05-17T21:51:35.4577847Z 2021-05-17T21:51:35.4580247Z 2021-05-17T21:51:35.4582081Z 2021-05-17T21:51:35.4660575Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:51:35.4661417Z (as ‘lib’ is unspecified) 2021-05-17T21:51:35.7066571Z * installing *source* package ‘aghast’ ... 2021-05-17T21:51:35.7070602Z ** using staged installation 2021-05-17T21:51:35.7261944Z ** R 2021-05-17T21:51:35.7329098Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:36.2783345Z ** help 2021-05-17T21:51:36.3098956Z *** installing help indices 2021-05-17T21:51:36.3345748Z ** building package indices 2021-05-17T21:51:36.5663543Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:36.7687651Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:36.9781734Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:36.9788266Z * DONE (aghast) 2021-05-17T21:51:36.9877914Z Installing 1 packages: covr 2021-05-17T21:51:36.9885077Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:51:36.9886283Z (as ‘lib’ is unspecified) 2021-05-17T21:51:53.6923646Z also installing the dependencies ‘lazyeval’, ‘rex’ 2021-05-17T21:51:53.6924510Z 2021-05-17T21:51:53.6930025Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/lazyeval_0.2.2.tar.gz' 2021-05-17T21:51:54.6703902Z Content type 'application/x-tar' length 83462 bytes (81 KB) 2021-05-17T21:51:54.6757405Z ================================================== 2021-05-17T21:51:54.6758128Z downloaded 81 KB 2021-05-17T21:51:54.6758621Z 2021-05-17T21:51:54.6799795Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rex_1.2.0.tar.gz' 2021-05-17T21:51:55.4117580Z Content type 'binary/octet-stream' length 91701 bytes (89 KB) 2021-05-17T21:51:55.4195699Z ================================================== 2021-05-17T21:51:55.4196282Z downloaded 89 KB 2021-05-17T21:51:55.4196704Z 2021-05-17T21:51:55.4235217Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/covr_3.5.1.tar.gz' 2021-05-17T21:51:56.1575961Z Content type 'binary/octet-stream' length 147467 bytes (144 KB) 2021-05-17T21:51:56.1678388Z ================================================== 2021-05-17T21:51:56.1679345Z downloaded 144 KB 2021-05-17T21:51:56.1679839Z 2021-05-17T21:51:56.4677928Z * installing *source* package ‘lazyeval’ ... 2021-05-17T21:51:56.4704042Z ** package ‘lazyeval’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:56.4705137Z ** using staged installation 2021-05-17T21:51:56.4874047Z ** libs 2021-05-17T21:51:56.4924034Z 2021-05-17T21:51:56.4925917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c expr.c -o expr.o 2021-05-17T21:51:56.5641463Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:51:56.6103679Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c interp.c -o interp.o 2021-05-17T21:51:56.6799821Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c lazy.c -o lazy.o 2021-05-17T21:51:56.7689544Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c name.c -o name.o 2021-05-17T21:51:56.8383117Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utils.c -o utils.o 2021-05-17T21:51:56.9175769Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o lazyeval.so expr.o init.o interp.o lazy.o name.o utils.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:51:56.9424262Z installing to /home/runner/work/_temp/Library/00LOCK-lazyeval/00new/lazyeval/libs 2021-05-17T21:51:56.9438351Z ** R 2021-05-17T21:51:56.9516468Z ** inst 2021-05-17T21:51:56.9530564Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:57.5685087Z ** help 2021-05-17T21:51:57.6355922Z *** installing help indices 2021-05-17T21:51:57.6917781Z ** building package indices 2021-05-17T21:51:57.9546902Z ** installing vignettes 2021-05-17T21:51:57.9618550Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:58.1673959Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:51:58.1882366Z ** testing if installed package can be loaded from final location 2021-05-17T21:51:58.4025031Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:51:58.4036044Z * DONE (lazyeval) 2021-05-17T21:51:58.7009227Z * installing *source* package ‘rex’ ... 2021-05-17T21:51:58.7037183Z ** package ‘rex’ successfully unpacked and MD5 sums checked 2021-05-17T21:51:58.7041543Z ** using staged installation 2021-05-17T21:51:58.7209061Z ** R 2021-05-17T21:51:58.7276949Z ** inst 2021-05-17T21:51:58.7291239Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:51:59.3543443Z ** help 2021-05-17T21:51:59.4113217Z *** installing help indices 2021-05-17T21:51:59.4591969Z ** building package indices 2021-05-17T21:51:59.7149703Z ** installing vignettes 2021-05-17T21:51:59.7239418Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:51:59.9359598Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:00.1584925Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:00.1594222Z * DONE (rex) 2021-05-17T21:52:00.5927345Z * installing *source* package ‘covr’ ... 2021-05-17T21:52:00.5997317Z ** package ‘covr’ successfully unpacked and MD5 sums checked 2021-05-17T21:52:00.5998615Z ** using staged installation 2021-05-17T21:52:00.6254628Z ** libs 2021-05-17T21:52:00.6311277Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c reassign.c -o reassign.o 2021-05-17T21:52:00.6989192Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o covr.so reassign.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:52:00.7148148Z installing to /home/runner/work/_temp/Library/00LOCK-covr/00new/covr/libs 2021-05-17T21:52:00.7165792Z ** R 2021-05-17T21:52:00.7328730Z ** inst 2021-05-17T21:52:00.7355297Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:52:02.4444119Z ** help 2021-05-17T21:52:02.5164422Z *** installing help indices 2021-05-17T21:52:02.5768651Z *** copying figures 2021-05-17T21:52:02.5771529Z ** building package indices 2021-05-17T21:52:02.8463760Z ** installing vignettes 2021-05-17T21:52:02.8522976Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:52:03.0739535Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:52:03.0970990Z ** testing if installed package can be loaded from final location 2021-05-17T21:52:03.3464320Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:52:03.3465555Z * DONE (covr) 2021-05-17T21:52:03.3569650Z 2021-05-17T21:52:03.3571968Z The downloaded source packages are in 2021-05-17T21:52:03.3573611Z ‘/tmp/RtmpWkFgDz/downloaded_packages’ 2021-05-17T21:52:03.3732203Z ##[group]Run Rscript -e "tic::before_install()" 2021-05-17T21:52:03.3732874Z Rscript -e "tic::before_install()" 2021-05-17T21:52:03.3784385Z shell: /usr/bin/bash -e {0} 2021-05-17T21:52:03.3784789Z env: 2021-05-17T21:52:03.3785259Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:52:03.3785743Z TIC_DEPLOY_KEY: 2021-05-17T21:52:03.3786582Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:52:03.3788266Z GITHUB_PAT: *** 2021-05-17T21:52:03.3789221Z COVERALLS_TOKEN: *** 2021-05-17T21:52:03.3789744Z continue-on-error: true 2021-05-17T21:52:03.3790247Z VDIFFR_RUN_TESTS: 2021-05-17T21:52:03.3790743Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:52:03.3791216Z TZ: UTC 2021-05-17T21:52:03.3791613Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:52:03.3792053Z NOT_CRAN: true 2021-05-17T21:52:03.3792451Z ##[endgroup] 2021-05-17T21:52:04.3169696Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:52:04.3170958Z Running before_install: step_install_remote_binaries() 2021-05-17T21:52:04.5541073Z Installing RNifti binaries 2021-05-17T21:52:04.5554297Z [1] "neuroconductor/RNifti" 2021-05-17T21:52:04.9193912Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T21:52:04.9205415Z Installing mmand binaries 2021-05-17T21:52:04.9216508Z [1] "neuroconductor/mmand" 2021-05-17T21:52:05.2260084Z OK (HTTP 200).OK (HTTP 200).No Binaries Found, exiting 2021-05-17T21:52:05.2393485Z ##[group]Run remotes::install_deps(dependencies = TRUE) 2021-05-17T21:52:05.2394272Z remotes::install_deps(dependencies = TRUE) 2021-05-17T21:52:05.2394854Z remotes::install_cran("rcmdcheck") 2021-05-17T21:52:05.2395398Z remotes::install_cran("markdown") 2021-05-17T21:52:05.2402196Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:52:05.2402773Z env: 2021-05-17T21:52:05.2403207Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:52:05.2403672Z TIC_DEPLOY_KEY: 2021-05-17T21:52:05.2404458Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:52:05.2406254Z GITHUB_PAT: *** 2021-05-17T21:52:05.2407160Z COVERALLS_TOKEN: *** 2021-05-17T21:52:05.2407648Z continue-on-error: true 2021-05-17T21:52:05.2408255Z VDIFFR_RUN_TESTS: 2021-05-17T21:52:05.2408718Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:52:05.2409141Z TZ: UTC 2021-05-17T21:52:05.2409496Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:52:05.2409921Z NOT_CRAN: true 2021-05-17T21:52:05.2410287Z ##[endgroup] 2021-05-17T21:52:27.2193175Z RNifti (NA -> 929106d1b...) [GitHub] 2021-05-17T21:52:27.2194687Z mmand (NA -> 4b29cf309...) [GitHub] 2021-05-17T21:52:27.2195757Z base64enc (NA -> 0.1-3 ) [CRAN] 2021-05-17T21:52:27.2196755Z R.utils (NA -> 2.10.1 ) [CRAN] 2021-05-17T21:52:27.2197707Z R.oo (NA -> 1.24.0 ) [CRAN] 2021-05-17T21:52:27.2198687Z R.methodsS3 (NA -> 1.8.1 ) [CRAN] 2021-05-17T21:52:27.2199717Z bitops (NA -> 1.0-7 ) [CRAN] 2021-05-17T21:52:27.2201109Z matrixStats (NA -> 0.58.0 ) [CRAN] 2021-05-17T21:52:27.2202147Z abind (NA -> 1.4-5 ) [CRAN] 2021-05-17T21:52:27.2203151Z oro.nifti (NA -> 0.11.0 ) [CRAN] 2021-05-17T21:52:27.2204331Z tinytex (NA -> 0.31 ) [CRAN] 2021-05-17T21:52:27.2205687Z htmltools (NA -> 0.5.1.1 ) [CRAN] 2021-05-17T21:52:27.2207126Z R.cache (NA -> 0.15.0 ) [CRAN] 2021-05-17T21:52:27.2208036Z neurobase (NA -> 1.32.1 ) [CRAN] 2021-05-17T21:52:27.2208949Z rmarkdown (NA -> 2.8 ) [CRAN] 2021-05-17T21:52:27.2209660Z RcppArmad... (NA -> 0.10.4.0.0 ) [CRAN] 2021-05-17T21:52:27.2210749Z R.rsp (NA -> 0.44.0 ) [CRAN] 2021-05-17T21:52:27.2211618Z fslr (NA -> 2.24.1 ) [CRAN] 2021-05-17T21:52:27.5714460Z Downloading GitHub repo neuroconductor/RNifti@929106d1b17d6c09c8b001b5e39d448ed9ef635f 2021-05-17T21:52:28.9579389Z 2021-05-17T21:52:29.2047491Z 2021-05-17T21:52:29.2064538Z checking for file ‘/tmp/RtmpCn6uyS/remotesd52169639f8d/neuroconductor-RNifti-929106d/DESCRIPTION’ ... 2021-05-17T21:52:29.2344348Z 2021-05-17T21:52:29.2347203Z ✔ checking for file ‘/tmp/RtmpCn6uyS/remotesd52169639f8d/neuroconductor-RNifti-929106d/DESCRIPTION’ 2021-05-17T21:52:29.2348387Z 2021-05-17T21:52:29.2358035Z 2021-05-17T21:52:29.2359223Z ─ preparing ‘RNifti’: 2021-05-17T21:52:29.2462548Z checking DESCRIPTION meta-information ... 2021-05-17T21:52:29.2504070Z 2021-05-17T21:52:29.2505421Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:52:29.2516794Z 2021-05-17T21:52:29.2541485Z 2021-05-17T21:52:29.2542746Z ─ cleaning src 2021-05-17T21:52:29.2547544Z 2021-05-17T21:52:29.2576708Z 2021-05-17T21:52:29.2577863Z ─ running ‘cleanup’ 2021-05-17T21:52:29.3143574Z 2021-05-17T21:52:29.3176475Z 2021-05-17T21:52:29.3178796Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:52:29.3651918Z 2021-05-17T21:52:29.3653037Z 2021-05-17T21:52:29.3654723Z ─ checking for empty or unneeded directories 2021-05-17T21:52:29.3688728Z 2021-05-17T21:52:29.3719266Z 2021-05-17T21:52:29.3721324Z ─ building ‘RNifti_1.3.1.tar.gz’ 2021-05-17T21:52:29.7564557Z 2021-05-17T21:52:29.7568885Z 2021-05-17T21:52:29.7570529Z 2021-05-17T21:52:29.7741727Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:52:29.7743324Z (as ‘lib’ is unspecified) 2021-05-17T21:52:30.1962159Z * installing *source* package ‘RNifti’ ... 2021-05-17T21:52:30.1964491Z ** using staged installation 2021-05-17T21:52:30.2161406Z ** libs 2021-05-17T21:52:30.2213224Z 2021-05-17T21:52:30.2216247Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c main.cpp -o main.o 2021-05-17T21:52:52.0269340Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zzz.c -o zzz.o 2021-05-17T21:52:52.1244414Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/adler32.c -o zlib/adler32.o 2021-05-17T21:52:52.2227402Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/compress.c -o zlib/compress.o 2021-05-17T21:52:52.2638787Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/crc32.c -o zlib/crc32.o 2021-05-17T21:52:52.3928232Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/deflate.c -o zlib/deflate.o 2021-05-17T21:52:52.9387126Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzclose.c -o zlib/gzclose.o 2021-05-17T21:52:52.9878215Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzlib.c -o zlib/gzlib.o 2021-05-17T21:52:53.1322283Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzread.c -o zlib/gzread.o 2021-05-17T21:52:53.3136576Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/gzwrite.c -o zlib/gzwrite.o 2021-05-17T21:52:53.4692051Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/infback.c -o zlib/infback.o 2021-05-17T21:52:53.7654702Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inffast.c -o zlib/inffast.o 2021-05-17T21:52:53.9069586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inflate.c -o zlib/inflate.o 2021-05-17T21:52:54.5240040Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/inftrees.c -o zlib/inftrees.o 2021-05-17T21:52:54.6328262Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/trees.c -o zlib/trees.o 2021-05-17T21:52:54.9898097Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/uncompr.c -o zlib/uncompr.o 2021-05-17T21:52:55.0331168Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c zlib/zutil.c -o zlib/zutil.o 2021-05-17T21:52:55.0850137Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c znzlib/znzlib.c -o znzlib/znzlib.o 2021-05-17T21:52:55.1754018Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti1_io.c -o niftilib/nifti1_io.o 2021-05-17T21:52:56.4970276Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -DNDEBUG -DHAVE_ZLIB -DUSING_R -DRNIFTI_NIFTILIB_DEDUPLICATE -I../inst/include -Izlib -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fpic -g -O2 -c niftilib/nifti2_io.c -o niftilib/nifti2_io.o 2021-05-17T21:52:59.2768955Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RNifti.so main.o zzz.o zlib/adler32.o zlib/compress.o zlib/crc32.o zlib/deflate.o zlib/gzclose.o zlib/gzlib.o zlib/gzread.o zlib/gzwrite.o zlib/infback.o zlib/inffast.o zlib/inflate.o zlib/inftrees.o zlib/trees.o zlib/uncompr.o zlib/zutil.o znzlib/znzlib.o niftilib/nifti1_io.o niftilib/nifti2_io.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:52:59.4731569Z installing to /home/runner/work/_temp/Library/00LOCK-RNifti/00new/RNifti/libs 2021-05-17T21:52:59.4876747Z ** R 2021-05-17T21:52:59.4964918Z ** inst 2021-05-17T21:52:59.4998799Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:53:00.8287022Z ** help 2021-05-17T21:53:00.8288073Z *** installing help indices 2021-05-17T21:53:00.8289145Z ** building package indices 2021-05-17T21:53:00.8379636Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:53:01.1653142Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:53:01.1903695Z ** testing if installed package can be loaded from final location 2021-05-17T21:53:01.5015388Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:53:01.5035160Z * DONE (RNifti) 2021-05-17T21:53:01.8801602Z Downloading GitHub repo neuroconductor/mmand@4b29cf309724e651dfd7469311119464fdd0d0fc 2021-05-17T21:53:03.4319826Z 2021-05-17T21:53:03.6442841Z 2021-05-17T21:53:03.6460040Z checking for file ‘/tmp/RtmpCn6uyS/remotesd5214d224663/neuroconductor-mmand-4b29cf3/DESCRIPTION’ ... 2021-05-17T21:53:03.6492778Z 2021-05-17T21:53:03.6495388Z ✔ checking for file ‘/tmp/RtmpCn6uyS/remotesd5214d224663/neuroconductor-mmand-4b29cf3/DESCRIPTION’ 2021-05-17T21:53:03.6598992Z 2021-05-17T21:53:03.6629464Z 2021-05-17T21:53:03.6631875Z ─ preparing ‘mmand’: 2021-05-17T21:53:03.6641230Z 2021-05-17T21:53:03.6643355Z 2021-05-17T21:53:03.6656060Z checking DESCRIPTION meta-information ... 2021-05-17T21:53:03.6683109Z 2021-05-17T21:53:03.6684413Z ✔ checking DESCRIPTION meta-information 2021-05-17T21:53:03.6692466Z 2021-05-17T21:53:03.6720796Z 2021-05-17T21:53:03.6721855Z ─ cleaning src 2021-05-17T21:53:03.6750051Z ─ running ‘cleanup’ 2021-05-17T21:53:03.7132447Z 2021-05-17T21:53:03.7170410Z 2021-05-17T21:53:03.7172533Z ─ checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:53:03.7545362Z 2021-05-17T21:53:03.7578022Z 2021-05-17T21:53:03.7579489Z ─ checking for empty or unneeded directories 2021-05-17T21:53:03.7625901Z 2021-05-17T21:53:03.7654908Z 2021-05-17T21:53:03.7655961Z ─ building ‘mmand_1.6.0.tar.gz’ 2021-05-17T21:53:04.2499027Z 2021-05-17T21:53:04.2526428Z 2021-05-17T21:53:04.2527061Z 2021-05-17T21:53:04.3076729Z Installing package into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:53:04.3078949Z (as ‘lib’ is unspecified) 2021-05-17T21:53:04.8351575Z * installing *source* package ‘mmand’ ... 2021-05-17T21:53:04.8357634Z ** using staged installation 2021-05-17T21:53:05.0925095Z 2021-05-17T21:53:05.1572307Z checking whether the C++ compiler works... yes 2021-05-17T21:53:05.1573812Z checking for C++ compiler default output file name... a.out 2021-05-17T21:53:05.2147348Z checking for suffix of executables... 2021-05-17T21:53:05.2893823Z checking whether we are cross compiling... no 2021-05-17T21:53:05.3174656Z checking for suffix of object files... o 2021-05-17T21:53:05.3458333Z checking whether we are using the GNU C++ compiler... yes 2021-05-17T21:53:05.3704335Z checking whether g++ -std=gnu++14 accepts -g... yes 2021-05-17T21:53:05.4596439Z checking for OpenMP flag of C++ compiler... -fopenmp 2021-05-17T21:53:05.4799038Z configure: creating ./config.status 2021-05-17T21:53:05.5658442Z config.status: creating src/Makevars 2021-05-17T21:53:05.6187104Z ** libs 2021-05-17T21:53:05.6250245Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Array.cpp -o Array.o 2021-05-17T21:53:10.1955918Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Componenter.cpp -o Componenter.o 2021-05-17T21:53:16.3801985Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Distancer.cpp -o Distancer.o 2021-05-17T21:53:20.3336732Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Kernel.cpp -o Kernel.o 2021-05-17T21:53:24.2507090Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Morpher.cpp -o Morpher.o 2021-05-17T21:53:28.2904944Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c Resampler.cpp -o Resampler.o 2021-05-17T21:53:32.6792226Z g++ -std=gnu++14 -I"/opt/R/devel/lib/R/include" -DNDEBUG -DLEMON_DISABLE_ASSERTS -I. -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -fopenmp -fpic -g -O2 -c main.cpp -o main.o 2021-05-17T21:53:41.3401514Z installing to /home/runner/work/_temp/Library/00LOCK-mmand/00new/mmand/libs 2021-05-17T21:53:41.3403467Z g++ -std=gnu++14 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o mmand.so Array.o Componenter.o Distancer.o Kernel.o Morpher.o Resampler.o main.o -fopenmp -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:53:41.3412848Z ** R 2021-05-17T21:53:41.3413412Z ** inst 2021-05-17T21:53:41.3414523Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:53:42.1498960Z ** help 2021-05-17T21:53:42.2135944Z *** installing help indices 2021-05-17T21:53:42.2627667Z ** building package indices 2021-05-17T21:53:42.5305469Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:53:42.8407805Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:53:42.8704484Z ** testing if installed package can be loaded from final location 2021-05-17T21:53:43.1888439Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:53:43.1903631Z * DONE (mmand) 2021-05-17T21:53:43.2064636Z Installing 16 packages: base64enc, R.utils, R.oo, R.methodsS3, bitops, matrixStats, abind, oro.nifti, tinytex, htmltools, R.cache, neurobase, rmarkdown, RcppArmadillo, R.rsp, fslr 2021-05-17T21:53:43.2072437Z Installing packages into ‘/home/runner/work/_temp/Library’ 2021-05-17T21:53:43.2073650Z (as ‘lib’ is unspecified) 2021-05-17T21:54:01.1175603Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/base64enc_0.1-3.tar.gz' 2021-05-17T21:54:01.8715796Z Content type 'application/x-tar' length 7843 bytes 2021-05-17T21:54:01.8716912Z ================================================== 2021-05-17T21:54:01.8717535Z downloaded 7843 bytes 2021-05-17T21:54:01.8717983Z 2021-05-17T21:54:01.8762539Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.utils_2.10.1.tar.gz' 2021-05-17T21:54:02.6192086Z Content type 'binary/octet-stream' length 361740 bytes (353 KB) 2021-05-17T21:54:02.6359090Z ================================================== 2021-05-17T21:54:02.6359865Z downloaded 353 KB 2021-05-17T21:54:02.6360292Z 2021-05-17T21:54:02.6402564Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.oo_1.24.0.tar.gz' 2021-05-17T21:54:03.3470755Z Content type 'binary/octet-stream' length 382199 bytes (373 KB) 2021-05-17T21:54:03.3471673Z ================================================== 2021-05-17T21:54:03.3472227Z downloaded 373 KB 2021-05-17T21:54:03.3472618Z 2021-05-17T21:54:03.3474240Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.methodsS3_1.8.1.tar.gz' 2021-05-17T21:54:03.9714829Z Content type 'binary/octet-stream' length 23789 bytes (23 KB) 2021-05-17T21:54:03.9718227Z ================================================== 2021-05-17T21:54:03.9718949Z downloaded 23 KB 2021-05-17T21:54:03.9719552Z 2021-05-17T21:54:03.9767651Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/bitops_1.0-7.tar.gz' 2021-05-17T21:54:05.1543145Z Content type 'binary/octet-stream' length 10887 bytes (10 KB) 2021-05-17T21:54:05.1551531Z ================================================== 2021-05-17T21:54:05.1552180Z downloaded 10 KB 2021-05-17T21:54:05.1552696Z 2021-05-17T21:54:05.1599597Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/matrixStats_0.58.0.tar.gz' 2021-05-17T21:54:05.8450559Z Content type 'binary/octet-stream' length 194842 bytes (190 KB) 2021-05-17T21:54:05.8577756Z ================================================== 2021-05-17T21:54:05.8578731Z downloaded 190 KB 2021-05-17T21:54:05.8579390Z 2021-05-17T21:54:05.8629615Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/abind_1.4-5.tar.gz' 2021-05-17T21:54:06.5744825Z Content type 'application/x-tar' length 21895 bytes (21 KB) 2021-05-17T21:54:06.5747692Z ================================================== 2021-05-17T21:54:06.5748266Z downloaded 21 KB 2021-05-17T21:54:06.5748581Z 2021-05-17T21:54:06.5796196Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/oro.nifti_0.11.0.tar.gz' 2021-05-17T21:54:07.5630209Z Content type 'binary/octet-stream' length 5230493 bytes (5.0 MB) 2021-05-17T21:54:07.6231766Z ================================================== 2021-05-17T21:54:07.6232491Z downloaded 5.0 MB 2021-05-17T21:54:07.6232849Z 2021-05-17T21:54:07.6353740Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/tinytex_0.31.tar.gz' 2021-05-17T21:54:09.0334007Z Content type 'binary/octet-stream' length 29350 bytes (28 KB) 2021-05-17T21:54:09.0335362Z ================================================== 2021-05-17T21:54:09.0335923Z downloaded 28 KB 2021-05-17T21:54:09.0336305Z 2021-05-17T21:54:09.0377898Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/htmltools_0.5.1.1.tar.gz' 2021-05-17T21:54:09.6271207Z Content type 'binary/octet-stream' length 72110 bytes (70 KB) 2021-05-17T21:54:09.6332331Z ================================================== 2021-05-17T21:54:09.6333061Z downloaded 70 KB 2021-05-17T21:54:09.6333350Z 2021-05-17T21:54:09.6378112Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/R.cache_0.15.0.tar.gz' 2021-05-17T21:54:10.5151039Z Content type 'binary/octet-stream' length 34640 bytes (33 KB) 2021-05-17T21:54:10.5158496Z ================================================== 2021-05-17T21:54:10.5159508Z downloaded 33 KB 2021-05-17T21:54:10.5160449Z 2021-05-17T21:54:10.5237315Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/neurobase_1.32.1.tar.gz' 2021-05-17T21:54:11.4668815Z Content type 'binary/octet-stream' length 1515038 bytes (1.4 MB) 2021-05-17T21:54:11.4991275Z ================================================== 2021-05-17T21:54:11.4991909Z downloaded 1.4 MB 2021-05-17T21:54:11.4992185Z 2021-05-17T21:54:11.5050442Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/rmarkdown_2.8.tar.gz' 2021-05-17T21:54:12.0776976Z Content type 'binary/octet-stream' length 3236609 bytes (3.1 MB) 2021-05-17T21:54:12.1134661Z ================================================== 2021-05-17T21:54:12.1135300Z downloaded 3.1 MB 2021-05-17T21:54:12.1135604Z 2021-05-17T21:54:12.8500909Z trying URL 'https://packagemanager.rstudio.com/cran/__linux__/focal/latest/src/contrib/RcppArmadillo_0.10.4.0.0.tar.gz' 2021-05-17T21:54:13.2207760Z Content type 'binary/octet-stream' length 1668845 bytes (1.6 MB) 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2021-05-17T21:54:17.1710723Z ** package ‘base64enc’ successfully unpacked and MD5 sums checked 2021-05-17T21:54:17.1711875Z ** using staged installation 2021-05-17T21:54:17.1828205Z ** libs 2021-05-17T21:54:17.1884010Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c base64.c -o base64.o 2021-05-17T21:54:17.3148458Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c uriencode.c -o uriencode.o 2021-05-17T21:54:17.4021399Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c utf8.c -o utf8.o 2021-05-17T21:54:17.4884840Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o base64enc.so base64.o uriencode.o utf8.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:54:17.5145017Z installing to /home/runner/work/_temp/Library/00LOCK-base64enc/00new/base64enc/libs 2021-05-17T21:54:17.5154871Z ** R 2021-05-17T21:54:17.5196723Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:54:17.8412661Z ** help 2021-05-17T21:54:17.8687511Z *** installing help indices 2021-05-17T21:54:17.8888427Z ** building package indices 2021-05-17T21:54:18.1157411Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:54:18.3246084Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:54:18.3442716Z ** testing if installed package can be loaded from final location 2021-05-17T21:54:18.5376481Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:54:18.5381907Z * DONE (base64enc) 2021-05-17T21:54:18.8083398Z * installing *source* package ‘R.methodsS3’ ... 2021-05-17T21:54:18.8099463Z ** package ‘R.methodsS3’ successfully unpacked and MD5 sums checked 2021-05-17T21:54:18.8100556Z ** using staged installation 2021-05-17T21:54:18.8239096Z ** R 2021-05-17T21:54:18.8313150Z ** inst 2021-05-17T21:54:18.8324100Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:54:19.4266548Z ** help 2021-05-17T21:54:19.4712646Z *** installing help indices 2021-05-17T21:54:19.5135584Z ** building package indices 2021-05-17T21:54:19.7541796Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:54:19.9564522Z ** testing if installed package can be loaded from final location 2021-05-17T21:54:20.1717563Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:54:20.1726697Z * DONE (R.methodsS3) 2021-05-17T21:54:20.4071198Z * installing *source* package ‘bitops’ ... 2021-05-17T21:54:20.4081751Z ** package ‘bitops’ successfully unpacked and MD5 sums checked 2021-05-17T21:54:20.4082811Z ** using staged installation 2021-05-17T21:54:20.4193210Z ** libs 2021-05-17T21:54:20.4247530Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c bit-ops.c -o bit-ops.o 2021-05-17T21:54:20.6341963Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c cksum.c -o cksum.o 2021-05-17T21:54:20.7023815Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:54:20.7562040Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o bitops.so bit-ops.o cksum.o init.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:54:20.7745325Z installing to /home/runner/work/_temp/Library/00LOCK-bitops/00new/bitops/libs 2021-05-17T21:54:20.7754740Z ** R 2021-05-17T21:54:20.7785262Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:54:21.0337696Z ** help 2021-05-17T21:54:21.0626587Z *** installing help indices 2021-05-17T21:54:21.0856981Z ** building package indices 2021-05-17T21:54:21.3112070Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:54:21.5136209Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:54:22.3522269Z ** testing if installed package can be loaded from final location 2021-05-17T21:54:22.3523930Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c 000.init.c -o 000.init.o 2021-05-17T21:54:22.3532812Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:54:22.3533833Z * DONE (bitops) 2021-05-17T21:54:22.3535074Z * installing *source* package ‘matrixStats’ ... 2021-05-17T21:54:22.3536445Z ** package ‘matrixStats’ successfully unpacked and MD5 sums checked 2021-05-17T21:54:22.3537314Z ** using staged installation 2021-05-17T21:54:22.3538779Z ** libs 2021-05-17T21:54:22.3558862Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c allocMatrix2.c -o allocMatrix2.o 2021-05-17T21:54:22.4483781Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c anyMissing.c -o anyMissing.o 2021-05-17T21:54:22.5708690Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binCounts.c -o binCounts.o 2021-05-17T21:54:22.6783632Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c binMeans.c -o binMeans.o 2021-05-17T21:54:22.8346867Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colCounts.c -o colCounts.o 2021-05-17T21:54:24.4086789Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colOrderStats.c -o colOrderStats.o 2021-05-17T21:54:24.8401383Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c colRanges.c -o colRanges.o 2021-05-17T21:54:26.5770917Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c diff2.c -o diff2.o 2021-05-17T21:54:26.8314513Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c indexByRow.c -o indexByRow.o 2021-05-17T21:54:26.9023600Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c logSumExp.c -o logSumExp.o 2021-05-17T21:54:27.1324234Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c mean2.c -o mean2.o 2021-05-17T21:54:27.2955601Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c productExpSumLog.c -o productExpSumLog.o 2021-05-17T21:54:27.4713298Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c psortKM.c -o psortKM.o 2021-05-17T21:54:27.5456675Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCounts.c -o rowCounts.o 2021-05-17T21:54:29.1689893Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummaxs.c -o rowCummaxs.o 2021-05-17T21:54:30.3315085Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCummins.c -o rowCummins.o 2021-05-17T21:54:31.5164869Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumprods.c -o rowCumprods.o 2021-05-17T21:54:32.5242119Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowCumsums.c -o rowCumsums.o 2021-05-17T21:54:33.5384112Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowDiffs.c -o rowDiffs.o 2021-05-17T21:54:35.9586586Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowLogSumExp.c -o rowLogSumExp.o 2021-05-17T21:54:36.1162326Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMads.c -o rowMads.o 2021-05-17T21:54:37.2645575Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMeans2.c -o rowMeans2.o 2021-05-17T21:54:37.9249903Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o 2021-05-17T21:54:38.9348309Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowOrderStats.c -o rowOrderStats.o 2021-05-17T21:54:39.4043382Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanges.c -o rowRanges.o 2021-05-17T21:54:41.2358207Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowRanksWithTies.c -o rowRanksWithTies.o 2021-05-17T21:54:55.2859857Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowSums2.c -o rowSums2.o 2021-05-17T21:54:55.9374477Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c rowVars.c -o rowVars.o 2021-05-17T21:54:56.7062759Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c signTabulate.c -o signTabulate.o 2021-05-17T21:54:56.8475627Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c sum2.c -o sum2.o 2021-05-17T21:54:56.9811474Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c validateIndices.c -o validateIndices.o 2021-05-17T21:54:57.2747742Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMean.c -o weightedMean.o 2021-05-17T21:54:57.4715669Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c weightedMedian.c -o weightedMedian.o 2021-05-17T21:54:57.9563044Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c x_OP_y.c -o x_OP_y.o 2021-05-17T21:56:01.3688001Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o matrixStats.so 000.init.o allocMatrix2.o anyMissing.o binCounts.o binMeans.o colCounts.o colOrderStats.o colRanges.o diff2.o indexByRow.o logSumExp.o mean2.o productExpSumLog.o psortKM.o rowCounts.o rowCummaxs.o rowCummins.o rowCumprods.o rowCumsums.o rowDiffs.o rowLogSumExp.o rowMads.o rowMeans2.o rowMedians.o rowOrderStats.o rowRanges.o rowRanksWithTies.o rowSums2.o rowVars.o signTabulate.o sum2.o validateIndices.o weightedMean.o weightedMedian.o x_OP_y.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:56:01.4705153Z installing to /home/runner/work/_temp/Library/00LOCK-matrixStats/00new/matrixStats/libs 2021-05-17T21:56:01.4813391Z ** R 2021-05-17T21:56:01.5060755Z ** inst 2021-05-17T21:56:01.5110297Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:56:03.2690795Z ** help 2021-05-17T21:56:03.4275556Z *** installing help indices 2021-05-17T21:56:03.5369370Z ** building package indices 2021-05-17T21:56:03.8465164Z ** installing vignettes 2021-05-17T21:56:03.8546845Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:56:04.0637421Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:56:04.0899355Z ** testing if installed package can be loaded from final location 2021-05-17T21:56:04.3092750Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:56:04.3114306Z * DONE (matrixStats) 2021-05-17T21:56:04.5633581Z * installing *source* package ‘abind’ ... 2021-05-17T21:56:04.5649439Z ** package ‘abind’ successfully unpacked and MD5 sums checked 2021-05-17T21:56:04.5650615Z ** using staged installation 2021-05-17T21:56:04.5771371Z ** R 2021-05-17T21:56:04.5825979Z ** inst 2021-05-17T21:56:04.5836927Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:56:05.3008641Z ** help 2021-05-17T21:56:05.3309494Z *** installing help indices 2021-05-17T21:56:05.3596670Z ** building package indices 2021-05-17T21:56:05.5953081Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:56:05.8096576Z ** testing if installed package can be loaded from final location 2021-05-17T21:56:06.0300493Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:56:06.0310110Z * DONE (abind) 2021-05-17T21:56:06.3083214Z * installing *source* package ‘tinytex’ ... 2021-05-17T21:56:06.3100251Z ** package ‘tinytex’ successfully unpacked and MD5 sums checked 2021-05-17T21:56:06.3101354Z ** using staged installation 2021-05-17T21:56:06.3343619Z ** R 2021-05-17T21:56:06.3434975Z ** inst 2021-05-17T21:56:06.3445824Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:56:07.2480252Z ** help 2021-05-17T21:56:07.2858099Z *** installing help indices 2021-05-17T21:56:07.3176759Z ** building package indices 2021-05-17T21:56:07.5445622Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:56:07.7637691Z ** testing if installed package can be loaded from final location 2021-05-17T21:56:07.9849399Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:56:07.9859751Z * DONE (tinytex) 2021-05-17T21:56:09.0083825Z * installing *source* package ‘RcppArmadillo’ ... 2021-05-17T21:56:09.0395918Z ** package ‘RcppArmadillo’ successfully unpacked and MD5 sums checked 2021-05-17T21:56:09.0398526Z ** using staged installation 2021-05-17T21:56:09.2953842Z checking whether the C++ compiler works... yes 2021-05-17T21:56:09.2955118Z checking for C++ compiler default output file name... a.out 2021-05-17T21:56:09.3514633Z checking for suffix of executables... 2021-05-17T21:56:09.4213447Z checking whether we are cross compiling... no 2021-05-17T21:56:09.4470579Z checking for suffix of object files... o 2021-05-17T21:56:09.4714135Z checking whether we are using the GNU C++ compiler... yes 2021-05-17T21:56:09.4977057Z checking whether g++ -std=gnu++14 accepts -g... yes 2021-05-17T21:56:09.5375305Z checking how to run the C++ preprocessor... g++ -std=gnu++14 -E 2021-05-17T21:56:09.5851578Z checking whether we are using the GNU C++ compiler... (cached) yes 2021-05-17T21:56:09.5854026Z checking whether g++ -std=gnu++14 accepts -g... (cached) yes 2021-05-17T21:56:09.7634591Z checking whether we have a suitable tempdir... /tmp 2021-05-17T21:56:09.8887306Z checking whether R CMD SHLIB can already compile programs using OpenMP... yes 2021-05-17T21:56:09.9204772Z checking LAPACK_LIBS... system LAPACK found 2021-05-17T21:56:09.9411128Z configure: creating ./config.status 2021-05-17T21:56:10.0228249Z config.status: creating inst/include/RcppArmadilloConfigGenerated.h 2021-05-17T21:56:10.0403900Z config.status: creating src/Makevars 2021-05-17T21:56:10.0931888Z ** libs 2021-05-17T21:56:10.0989961Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppArmadillo.cpp -o RcppArmadillo.o 2021-05-17T21:56:18.1890707Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c RcppExports.cpp -o RcppExports.o 2021-05-17T21:56:27.0580638Z g++ -std=gnu++11 -I"/opt/R/devel/lib/R/include" -DNDEBUG -I'/home/runner/work/_temp/Library/Rcpp/include' -I/usr/local/include -I../inst/include -fpic -g -O2 -c fastLm.cpp -o fastLm.o 2021-05-17T21:56:38.4566664Z g++ -std=gnu++11 -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o RcppArmadillo.so RcppArmadillo.o RcppExports.o fastLm.o -llapack -lblas -lgfortran -lm -lquadmath -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:56:38.5888271Z installing to /home/runner/work/_temp/Library/00LOCK-RcppArmadillo/00new/RcppArmadillo/libs 2021-05-17T21:56:38.5939555Z ** R 2021-05-17T21:56:38.5984543Z ** inst 2021-05-17T21:56:38.6374273Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:56:39.1214484Z ** help 2021-05-17T21:56:39.1521019Z *** installing help indices 2021-05-17T21:56:39.1769248Z ** building package indices 2021-05-17T21:56:39.3925843Z ** installing vignettes 2021-05-17T21:56:39.3991173Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:56:39.7056673Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:56:39.7285133Z ** testing if installed package can be loaded from final location 2021-05-17T21:56:40.0503908Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:56:40.0504957Z * DONE (RcppArmadillo) 2021-05-17T21:56:40.4991014Z * installing *source* package ‘R.oo’ ... 2021-05-17T21:56:40.5064520Z ** package ‘R.oo’ successfully unpacked and MD5 sums checked 2021-05-17T21:56:40.5065958Z ** using staged installation 2021-05-17T21:56:40.5261728Z ** R 2021-05-17T21:56:40.5659439Z ** inst 2021-05-17T21:56:40.5679511Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:56:44.0461533Z ** help 2021-05-17T21:56:44.6230625Z *** installing help indices 2021-05-17T21:56:45.0427135Z ** building package indices 2021-05-17T21:56:45.6100642Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:56:45.8354728Z ** testing if installed package can be loaded from final location 2021-05-17T21:56:46.1513014Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:56:46.1564448Z * DONE (R.oo) 2021-05-17T21:56:46.8259255Z * installing *source* package ‘oro.nifti’ ... 2021-05-17T21:56:46.8454245Z ** package ‘oro.nifti’ successfully unpacked and MD5 sums checked 2021-05-17T21:56:46.8455458Z ** using staged installation 2021-05-17T21:56:46.8668342Z ** R 2021-05-17T21:56:46.9179544Z ** demo 2021-05-17T21:56:46.9189617Z ** inst 2021-05-17T21:56:46.9266471Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:56:55.5329062Z Creating a new generic function for ‘origin’ in package ‘oro.nifti’ 2021-05-17T21:56:55.5330935Z ** help 2021-05-17T21:56:55.9635545Z *** installing help indices 2021-05-17T21:56:56.2841345Z ** building package indices 2021-05-17T21:56:56.7892482Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:56:57.4680628Z ** testing if installed package can be loaded from final location 2021-05-17T21:56:58.3305676Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:56:58.3392904Z * DONE (oro.nifti) 2021-05-17T21:56:58.6396211Z * installing *source* package ‘htmltools’ ... 2021-05-17T21:56:58.6421766Z ** package ‘htmltools’ successfully unpacked and MD5 sums checked 2021-05-17T21:56:58.6423255Z ** using staged installation 2021-05-17T21:56:58.6611826Z ** libs 2021-05-17T21:56:58.6666995Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c init.c -o init.o 2021-05-17T21:56:58.7202455Z gcc -I"/opt/R/devel/lib/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -c template.c -o template.o 2021-05-17T21:56:58.8451945Z gcc -shared -L/opt/R/devel/lib/R/lib -L/usr/local/lib -o htmltools.so init.o template.o -L/opt/R/devel/lib/R/lib -lR 2021-05-17T21:56:58.8704473Z installing to /home/runner/work/_temp/Library/00LOCK-htmltools/00new/htmltools/libs 2021-05-17T21:56:58.8705717Z ** R 2021-05-17T21:56:58.8836055Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:00.6719721Z ** help 2021-05-17T21:57:00.7652011Z *** installing help indices 2021-05-17T21:57:00.8355411Z ** building package indices 2021-05-17T21:57:01.1255796Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:01.3543552Z ** checking absolute paths in shared objects and dynamic libraries 2021-05-17T21:57:01.3791038Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:01.6285324Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:01.6299974Z * DONE (htmltools) 2021-05-17T21:57:02.2896183Z * installing *source* package ‘R.utils’ ... 2021-05-17T21:57:02.3027057Z ** package ‘R.utils’ successfully unpacked and MD5 sums checked 2021-05-17T21:57:02.3029361Z ** using staged installation 2021-05-17T21:57:02.3205660Z ** R 2021-05-17T21:57:02.4032100Z ** inst 2021-05-17T21:57:02.4047459Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:10.1982768Z Warning in setGenericS3.default(name, export = exportGeneric, envir = envir, : 2021-05-17T21:57:10.1984655Z ** help 2021-05-17T21:57:10.1985561Z Renamed the preexisting function warnings to warnings.default, which was defined in environment base. 2021-05-17T21:57:11.2079482Z *** installing help indices 2021-05-17T21:57:11.7968733Z ** building package indices 2021-05-17T21:57:12.6764551Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:12.9667651Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:13.4471607Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:13.4555989Z * DONE (R.utils) 2021-05-17T21:57:14.4777781Z * installing *source* package ‘rmarkdown’ ... 2021-05-17T21:57:14.5088502Z ** package ‘rmarkdown’ successfully unpacked and MD5 sums checked 2021-05-17T21:57:14.5089667Z ** using staged installation 2021-05-17T21:57:14.5438700Z ** R 2021-05-17T21:57:14.5873030Z ** inst 2021-05-17T21:57:14.6121644Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:18.9316556Z ** help 2021-05-17T21:57:19.1655240Z *** installing help indices 2021-05-17T21:57:19.3505740Z *** copying figures 2021-05-17T21:57:19.3508612Z ** building package indices 2021-05-17T21:57:19.7003990Z ** installing vignettes 2021-05-17T21:57:19.7091478Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:19.9799785Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:20.3278214Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:20.3339933Z * DONE (rmarkdown) 2021-05-17T21:57:20.6301078Z * installing *source* package ‘R.cache’ ... 2021-05-17T21:57:20.6327342Z ** package ‘R.cache’ successfully unpacked and MD5 sums checked 2021-05-17T21:57:20.6328614Z ** using staged installation 2021-05-17T21:57:20.6492164Z ** R 2021-05-17T21:57:20.6584750Z ** inst 2021-05-17T21:57:20.6595960Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:21.4177580Z ** help 2021-05-17T21:57:21.4858028Z *** installing help indices 2021-05-17T21:57:21.5368687Z ** building package indices 2021-05-17T21:57:21.7964607Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:22.1446812Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:22.4630518Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:22.4640473Z * DONE (R.cache) 2021-05-17T21:57:22.9552876Z * installing *source* package ‘neurobase’ ... 2021-05-17T21:57:22.9658426Z ** package ‘neurobase’ successfully unpacked and MD5 sums checked 2021-05-17T21:57:22.9659182Z ** using staged installation 2021-05-17T21:57:22.9856815Z ** R 2021-05-17T21:57:23.0141299Z ** inst 2021-05-17T21:57:23.0182160Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:26.3294028Z ** help 2021-05-17T21:57:26.5418840Z *** installing help indices 2021-05-17T21:57:26.6983919Z ** building package indices 2021-05-17T21:57:27.0568029Z ** installing vignettes 2021-05-17T21:57:27.0659384Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:27.9407449Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:28.8572631Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:28.8597987Z * DONE (neurobase) 2021-05-17T21:57:29.5118020Z * installing *source* package ‘R.rsp’ ... 2021-05-17T21:57:29.5254147Z ** package ‘R.rsp’ successfully unpacked and MD5 sums checked 2021-05-17T21:57:29.5255439Z ** using staged installation 2021-05-17T21:57:29.5461565Z ** R 2021-05-17T21:57:29.6021611Z ** exec 2021-05-17T21:57:29.6028244Z ** inst 2021-05-17T21:57:29.6150004Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:35.5959534Z ** help 2021-05-17T21:57:36.2097974Z *** installing help indices 2021-05-17T21:57:36.6155617Z ** building package indices 2021-05-17T21:57:37.1863969Z ** installing vignettes 2021-05-17T21:57:37.2077077Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:37.5521400Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:38.0082177Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:38.0162058Z * DONE (R.rsp) 2021-05-17T21:57:38.5428624Z * installing *source* package ‘fslr’ ... 2021-05-17T21:57:38.5529220Z ** package ‘fslr’ successfully unpacked and MD5 sums checked 2021-05-17T21:57:38.5531722Z ** using staged installation 2021-05-17T21:57:38.5706267Z ** R 2021-05-17T21:57:38.6125353Z ** inst 2021-05-17T21:57:38.6146446Z ** byte-compile and prepare package for lazy loading 2021-05-17T21:57:41.8983941Z ** help 2021-05-17T21:57:42.3693636Z *** installing help indices 2021-05-17T21:57:42.7520563Z ** building package indices 2021-05-17T21:57:43.2684212Z ** installing vignettes 2021-05-17T21:57:43.2797251Z ** testing if installed package can be loaded from temporary location 2021-05-17T21:57:44.2070118Z ** testing if installed package can be loaded from final location 2021-05-17T21:57:45.2647258Z ** testing if installed package keeps a record of temporary installation path 2021-05-17T21:57:45.2676545Z * DONE (fslr) 2021-05-17T21:57:45.2823195Z 2021-05-17T21:57:45.2824491Z The downloaded source packages are in 2021-05-17T21:57:45.2826278Z ‘/tmp/RtmpCn6uyS/downloaded_packages’ 2021-05-17T21:57:45.4593750Z Skipping install of 'RNifti' from a github remote, the SHA1 (929106d1) has not changed since last install. 2021-05-17T21:57:45.4595463Z Use `force = TRUE` to force installation 2021-05-17T21:57:45.6137763Z Skipping install of 'mmand' from a github remote, the SHA1 (4b29cf30) has not changed since last install. 2021-05-17T21:57:45.6139452Z Use `force = TRUE` to force installation 2021-05-17T21:58:02.5180774Z Skipping install of 'rcmdcheck' from a cran remote, the SHA1 (1.3.3) has not changed since last install. 2021-05-17T21:58:02.5183190Z Use `force = TRUE` to force installation 2021-05-17T21:58:02.5196160Z Skipping install of 'markdown' from a cran remote, the SHA1 (1.1) has not changed since last install. 2021-05-17T21:58:02.5197473Z Use `force = TRUE` to force installation 2021-05-17T21:58:02.5367446Z ##[group]Run options(width = 100) 2021-05-17T21:58:02.5368009Z options(width = 100) 2021-05-17T21:58:02.5368500Z pkgs <- installed.packages()[, "Package"] 2021-05-17T21:58:02.5369082Z sessioninfo::session_info(pkgs, include_base = TRUE) 2021-05-17T21:58:02.5376923Z shell: /usr/local/bin/Rscript {0} 2021-05-17T21:58:02.5377289Z env: 2021-05-17T21:58:02.5377680Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:58:02.5378248Z TIC_DEPLOY_KEY: 2021-05-17T21:58:02.5378925Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:58:02.5380316Z GITHUB_PAT: *** 2021-05-17T21:58:02.5381245Z COVERALLS_TOKEN: *** 2021-05-17T21:58:02.5382059Z continue-on-error: true 2021-05-17T21:58:02.5382839Z VDIFFR_RUN_TESTS: 2021-05-17T21:58:02.5383276Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:58:02.5383691Z TZ: UTC 2021-05-17T21:58:02.5384032Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:58:02.5384448Z NOT_CRAN: true 2021-05-17T21:58:02.5385167Z ##[endgroup] 2021-05-17T21:58:03.0852500Z ─ Session info ─────────────────────────────────────────────────────────────────────────────────── 2021-05-17T21:58:03.0853178Z setting value 2021-05-17T21:58:03.0854791Z version R Under development (unstable) (2021-05-16 r80304) 2021-05-17T21:58:03.0855644Z os Ubuntu 20.04.2 LTS 2021-05-17T21:58:03.0856350Z system x86_64, linux-gnu 2021-05-17T21:58:03.0856894Z ui X11 2021-05-17T21:58:03.0857404Z language (EN) 2021-05-17T21:58:03.0858136Z collate C.UTF-8 2021-05-17T21:58:03.0858843Z ctype C.UTF-8 2021-05-17T21:58:03.0859348Z tz UTC 2021-05-17T21:58:03.0860024Z date 2021-05-17 2021-05-17T21:58:03.0860306Z 2021-05-17T21:58:03.0861285Z ─ Packages ─────────────────────────────────────────────────────────────────────────────────────── 2021-05-17T21:58:03.0861996Z package * version date lib source 2021-05-17T21:58:03.0863659Z abind 1.4-5 2016-07-21 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0864556Z aghast 0.2.1 2021-05-17 [1] Github (muschellij2/aghast@0c3b853) 2021-05-17T21:58:03.0865461Z askpass 1.1 2019-01-13 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0866269Z base * 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0867084Z base64enc 0.1-3 2015-07-28 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0867916Z bitops 1.0-7 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0868737Z boot 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2021-05-17T21:58:03.0891782Z foreign 0.8-81 2020-12-22 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0892684Z fs 1.5.0 2020-07-31 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0893428Z fslr 2.24.1 2019-08-05 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0894535Z generics 0.1.0 2020-10-31 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0895472Z gert 1.3.0 2021-03-29 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0896227Z gh 1.3.0 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0897071Z ghtravis 0.15.1 2021-05-17 [1] Github (muschellij2/ghtravis@0b26809) 2021-05-17T21:58:03.0897907Z git2r 0.28.0 2021-01-10 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0898680Z gitcreds 0.1.1 2020-12-04 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0899452Z glue 1.4.2 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0900203Z graphics * 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0900989Z grDevices * 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0901973Z grid 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0903026Z highr 0.9 2021-04-16 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0903796Z htmltools 0.5.1.1 2021-01-22 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0904556Z httr 1.4.2 2020-07-20 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0905327Z ini 0.3.1 2018-05-20 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0906085Z jsonlite 1.7.2 2020-12-09 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0906977Z KernSmooth 2.23-20 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0907819Z knitr 1.33 2021-04-24 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0909024Z lattice 0.20-44 2021-05-02 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0910544Z lazyeval 0.2.2 2019-03-15 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0912118Z lifecycle 1.0.0 2021-02-15 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0922149Z magrittr 2.0.1 2020-11-17 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0923181Z markdown 1.1 2019-08-07 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0924154Z MASS 7.3-54 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0924941Z Matrix 1.3-3 2021-05-04 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0925758Z matrixStats 0.58.0 2021-01-29 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0926583Z memoise 2.0.0 2021-01-26 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0927376Z methods * 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0928146Z mgcv 1.8-35 2021-04-18 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0928922Z mime 0.10 2021-02-13 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0929782Z mmand 1.6.0 2021-05-17 [1] Github (neuroconductor/mmand@4b29cf3) 2021-05-17T21:58:03.0930660Z neurobase 1.32.1 2021-04-07 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0931850Z nlme 3.1-152 2021-02-04 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0932821Z nnet 7.3-16 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0933626Z openssl 1.4.4 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0934460Z oro.nifti 0.11.0 2020-09-08 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0935576Z parallel 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0936356Z pillar 1.6.1 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0937365Z pkgbuild 1.2.0 2020-12-15 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0938138Z pkgconfig 2.0.3 2019-09-22 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0939279Z pkgload 1.2.1 2021-04-06 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0940490Z praise 1.0.0 2015-08-11 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0941564Z prettyunits 1.1.1 2020-01-24 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0943425Z processx 3.5.2 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0944302Z ps 1.6.0 2021-02-28 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0945232Z purrr 0.3.4 2020-04-17 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0946015Z R.cache 0.15.0 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0946831Z R.methodsS3 1.8.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0947610Z R.oo 1.24.0 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0948376Z R.rsp 0.44.0 2020-07-09 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0949155Z R.utils 2.10.1 2020-08-26 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0950105Z R6 2.5.0 2020-10-28 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0950909Z rappdirs 0.3.3 2021-01-31 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0952244Z rcmdcheck 1.3.3 2019-05-07 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0953313Z Rcpp 1.0.6 2021-01-15 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0954347Z RcppArmadillo 0.10.4.0.0 2021-04-13 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0955508Z rematch2 2.1.2 2020-05-01 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0956291Z remotes 2.3.0 2021-04-01 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0957049Z rex 1.2.0 2020-04-21 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0957966Z rlang 0.4.11 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0958759Z rmarkdown 2.8 2021-05-07 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0960334Z RNifti 1.3.1 2021-05-17 [1] Github (neuroconductor/RNifti@929106d) 2021-05-17T21:58:03.0961605Z roxygen2 7.1.1 2020-06-27 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0962800Z rpart 4.1-15 2019-04-12 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0963956Z rprojroot 2.0.2 2020-11-15 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0964970Z rstudioapi 0.13 2020-11-12 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0965968Z rversions 2.0.2 2020-05-25 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0966795Z sessioninfo 1.1.1 2018-11-05 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0967591Z spatial 7.3-14 2021-05-03 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0968380Z splines 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0969157Z stats * 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0970153Z stats4 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0971131Z stringi 1.6.2 2021-05-17 [1] CRAN (R 4.2.0) 2021-05-17T21:58:03.0972187Z stringr 1.4.0 2019-02-10 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0973205Z survival 3.2-11 2021-04-26 [2] CRAN (R 4.2.0) 2021-05-17T21:58:03.0974169Z sys 3.4 2020-07-23 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0975169Z sysreqs 1.0.0.9000 2021-05-17 [1] Github (r-hub/sysreqs@f068afa) 2021-05-17T21:58:03.0975999Z tcltk 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0976780Z testthat 3.0.2 2021-02-14 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0977556Z tibble 3.1.2 2021-05-16 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0978384Z tic 0.10.0 2021-05-17 [1] Github (ropensci/tic@3b4dfb8) 2021-05-17T21:58:03.0979378Z tidyr 1.1.3 2021-03-03 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0980388Z tidyselect 1.1.1 2021-04-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0981438Z tinytex 0.31 2021-03-30 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0982683Z tools 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0983700Z usethis 2.0.1 2021-02-10 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0984511Z utf8 1.2.1 2021-03-12 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0985306Z utils * 4.2.0 2021-05-17 [2] local 2021-05-17T21:58:03.0986085Z vctrs 0.3.8 2021-04-29 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0986883Z waldo 0.2.5 2021-03-08 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0987817Z whisker 0.4 2019-08-28 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0988672Z withr 2.4.2 2021-04-18 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0989470Z xfun 0.23 2021-05-15 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0990460Z xml2 1.3.2 2020-04-23 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0991273Z xopen 1.0.0 2018-09-17 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0992298Z yaml 2.2.1 2020-02-01 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0993260Z zip 2.1.1 2020-08-27 [1] RSPM (R 4.2.0) 2021-05-17T21:58:03.0993572Z 2021-05-17T21:58:03.0994039Z [1] /home/runner/work/_temp/Library 2021-05-17T21:58:03.0994583Z [2] /opt/R/devel/lib/R/library 2021-05-17T21:58:03.1029299Z ##[group]Run Rscript -e 'tic::script()' 2021-05-17T21:58:03.1029918Z Rscript -e 'tic::script()' 2021-05-17T21:58:03.1030359Z ls -l check 2021-05-17T21:58:03.1077650Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T21:58:03.1078155Z env: 2021-05-17T21:58:03.1078608Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T21:58:03.1079071Z TIC_DEPLOY_KEY: 2021-05-17T21:58:03.1079885Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T21:58:03.1081639Z GITHUB_PAT: *** 2021-05-17T21:58:03.1083131Z COVERALLS_TOKEN: *** 2021-05-17T21:58:03.1083771Z continue-on-error: true 2021-05-17T21:58:03.1084269Z VDIFFR_RUN_TESTS: 2021-05-17T21:58:03.1084981Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T21:58:03.1085439Z TZ: UTC 2021-05-17T21:58:03.1085819Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T21:58:03.1086236Z NOT_CRAN: true 2021-05-17T21:58:03.1086621Z ##[endgroup] 2021-05-17T21:58:03.4226347Z ✔ Loading tic stage configuration from tic.R 2021-05-17T21:58:03.6046890Z Running script: step_rcmdcheck(warnings_are_errors = NULL, notes_are_errors = NULL, 2021-05-17T21:58:03.6047981Z args = args, build_args = NULL, error_on = error_on, repos = repo_default(), 2021-05-17T21:58:03.6048758Z timeout = Inf, check_dir = "check") 2021-05-17T21:58:03.6792887Z ── R CMD build ───────────────────────────────────────────────────────────────── 2021-05-17T21:58:04.0574946Z * checking for file ‘.../DESCRIPTION’ ... OK 2021-05-17T21:58:04.0853682Z * preparing ‘pbj’: 2021-05-17T21:58:04.0997783Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:58:04.0999105Z * cleaning src 2021-05-17T21:58:04.1034904Z * running ‘cleanup’ 2021-05-17T21:58:04.2692852Z * installing the package to build vignettes 2021-05-17T21:58:40.9864358Z * creating vignettes ... OK 2021-05-17T21:58:40.9981027Z * cleaning src 2021-05-17T21:58:41.0046173Z * running ‘cleanup’ 2021-05-17T21:58:41.0434040Z * checking for LF line-endings in source and make files and shell scripts 2021-05-17T21:58:41.0460738Z * checking for empty or unneeded directories 2021-05-17T21:58:41.0484889Z Omitted ‘LazyData’ from DESCRIPTION 2021-05-17T21:58:41.0568506Z * building ‘pbj_0.1.6.tar.gz’ 2021-05-17T21:58:41.6423561Z 2021-05-17T21:58:41.9141962Z ── R CMD check ───────────────────────────────────────────────────────────────── 2021-05-17T21:58:42.1600518Z * using log directory ‘/home/runner/work/pbj/pbj/check/pbj.Rcheck’ 2021-05-17T21:58:42.1601903Z * using R Under development (unstable) (2021-05-16 r80304) 2021-05-17T21:58:42.1604850Z * using platform: x86_64-pc-linux-gnu (64-bit) 2021-05-17T21:58:42.1605934Z * using session charset: UTF-8 2021-05-17T21:58:42.5059893Z * using option ‘--as-cran’ 2021-05-17T21:58:42.5091533Z * checking for file ‘pbj/DESCRIPTION’ ... OK 2021-05-17T21:58:42.5092230Z * checking extension type ... Package 2021-05-17T21:58:42.5093020Z * this is package ‘pbj’ version ‘0.1.6’ 2021-05-17T21:58:42.5093710Z * package encoding: UTF-8 2021-05-17T21:58:42.5131853Z * checking package namespace information ... OK 2021-05-17T21:59:00.9847905Z * checking package dependencies ... OK 2021-05-17T21:59:00.9848892Z * checking if this is a source package ... OK 2021-05-17T21:59:00.9849735Z * checking if there is a namespace ... OK 2021-05-17T21:59:01.2024088Z * checking for executable files ... OK 2021-05-17T21:59:01.2024953Z * checking for hidden files and directories ... OK 2021-05-17T21:59:01.2036871Z * checking for portable file names ... OK 2021-05-17T21:59:01.2045377Z * checking for sufficient/correct file permissions ... OK 2021-05-17T21:59:01.2083793Z * checking serialization versions ... OK 2021-05-17T21:59:38.5556708Z * checking whether package ‘pbj’ can be installed ... OK 2021-05-17T21:59:38.5641764Z * checking installed package size ... NOTE 2021-05-17T21:59:38.5642987Z installed size is 10.0Mb 2021-05-17T21:59:38.5655897Z sub-directories of 1Mb or more: 2021-05-17T21:59:38.5658522Z doc 3.9Mb 2021-05-17T21:59:38.5659842Z images 2.2Mb 2021-05-17T21:59:38.5660561Z libs 3.7Mb 2021-05-17T21:59:38.6703598Z * checking package directory ... OK 2021-05-17T21:59:38.6704504Z * checking for future file timestamps ... OK 2021-05-17T21:59:38.6717031Z * checking ‘build’ directory ... OK 2021-05-17T21:59:38.8566238Z * checking DESCRIPTION meta-information ... OK 2021-05-17T21:59:38.8597838Z * checking top-level files ... NOTE 2021-05-17T21:59:38.8599222Z ‘cleanup’: /bin/bash is not portable 2021-05-17T21:59:38.9296751Z * checking for left-over files ... OK 2021-05-17T21:59:39.2434749Z * checking index information ... OK 2021-05-17T21:59:39.6892839Z * checking package subdirectories ... OK 2021-05-17T21:59:39.7383428Z * checking R files for non-ASCII characters ... OK 2021-05-17T21:59:39.7972564Z * checking R files for syntax errors ... OK 2021-05-17T21:59:41.1587282Z * checking whether the package can be loaded ... OK 2021-05-17T21:59:42.4903874Z * checking whether the package can be loaded with stated dependencies ... OK 2021-05-17T21:59:43.8180694Z * checking whether the package can be unloaded cleanly ... OK 2021-05-17T21:59:45.2083437Z * checking whether the namespace can be loaded with stated dependencies ... OK 2021-05-17T21:59:46.5863994Z * checking whether the namespace can be unloaded cleanly ... OK 2021-05-17T21:59:47.9704037Z * checking loading without being on the library search path ... OK 2021-05-17T21:59:49.8993626Z * checking dependencies in R code ... OK 2021-05-17T21:59:52.0458972Z * checking S3 generic/method consistency ... OK 2021-05-17T21:59:53.3354267Z * checking replacement functions ... OK 2021-05-17T21:59:54.7627064Z * checking foreign function calls ... OK 2021-05-17T22:00:05.0096373Z * checking R code for possible problems ... OK 2021-05-17T22:00:05.2998288Z * checking Rd files ... OK 2021-05-17T22:00:05.3544654Z * checking Rd metadata ... OK 2021-05-17T22:00:05.4556887Z * checking Rd line widths ... OK 2021-05-17T22:00:05.5970027Z * checking Rd cross-references ... OK 2021-05-17T22:00:06.9533332Z * checking for missing documentation entries ... OK 2021-05-17T22:00:11.0416173Z * checking for code/documentation mismatches ... OK 2021-05-17T22:00:13.4801795Z * checking Rd \usage sections ... OK 2021-05-17T22:00:13.6192021Z * checking Rd contents ... OK 2021-05-17T22:00:13.6898920Z * checking for unstated dependencies in examples ... OK 2021-05-17T22:00:13.6930001Z * checking line endings in shell scripts ... OK 2021-05-17T22:00:13.6934250Z * checking line endings in C/C++/Fortran sources/headers ... OK 2021-05-17T22:00:13.6947963Z * checking line endings in Makefiles ... OK 2021-05-17T22:00:13.7624323Z * checking compilation flags in Makevars ... OK 2021-05-17T22:00:13.7625379Z * checking for GNU extensions in Makefiles ... OK 2021-05-17T22:00:13.7626218Z * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK 2021-05-17T22:00:13.7627155Z * checking use of PKG_*FLAGS in Makefiles ... OK 2021-05-17T22:00:13.7650811Z * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK 2021-05-17T22:00:13.7674742Z * checking pragmas in C/C++ headers and code ... OK 2021-05-17T22:00:13.7690889Z * checking compilation flags used ... OK 2021-05-17T22:00:13.8624964Z * checking compiled code ... OK 2021-05-17T22:00:25.3732617Z * checking sizes of PDF files under ‘inst/doc’ ... OK 2021-05-17T22:00:25.4534608Z * checking installed files from ‘inst/doc’ ... OK 2021-05-17T22:00:25.4588210Z * checking files in ‘vignettes’ ... OK 2021-05-17T22:00:25.6796991Z * checking examples ... NONE 2021-05-17T22:00:26.0103802Z * checking for unstated dependencies in vignettes ... OK 2021-05-17T22:00:26.0195867Z * checking package vignettes in ‘inst/doc’ ... OK 2021-05-17T22:00:26.4862748Z * checking re-building of vignette outputs ... OK 2021-05-17T22:00:29.3865754Z * checking PDF version of manual ... OK 2021-05-17T22:00:29.3867460Z * checking for non-standard things in the check directory ... OK 2021-05-17T22:00:29.3868281Z * checking for detritus in the temp directory ... OK 2021-05-17T22:00:29.3868784Z * DONE 2021-05-17T22:00:29.3869259Z 2021-05-17T22:00:29.3869687Z Status: 2 NOTEs 2021-05-17T22:00:29.3870058Z See 2021-05-17T22:00:29.3870982Z ‘/home/runner/work/pbj/pbj/check/pbj.Rcheck/00check.log’ 2021-05-17T22:00:29.3871575Z for details. 2021-05-17T22:00:29.3871830Z 2021-05-17T22:00:29.3872056Z 2021-05-17T22:00:29.5209038Z ── R CMD check results ────────────────────────────────────────── pbj 0.1.6 ──── 2021-05-17T22:00:29.5230349Z Duration: 1m 47.9s 2021-05-17T22:00:29.5232118Z 2021-05-17T22:00:29.5259690Z ❯ checking installed package size ... NOTE 2021-05-17T22:00:29.5262690Z installed size is 10.0Mb 2021-05-17T22:00:29.5263755Z sub-directories of 1Mb or more: 2021-05-17T22:00:29.5264257Z doc 3.9Mb 2021-05-17T22:00:29.5264676Z images 2.2Mb 2021-05-17T22:00:29.5265078Z libs 3.7Mb 2021-05-17T22:00:29.5265336Z 2021-05-17T22:00:29.5279362Z ❯ checking top-level files ... NOTE 2021-05-17T22:00:29.5281689Z ‘cleanup’: /bin/bash is not portable 2021-05-17T22:00:29.5282603Z 2021-05-17T22:00:29.5297582Z 0 errors ✔ | 0 warnings ✔ | 2 notes ✖ 2021-05-17T22:00:29.5405407Z total 11904 2021-05-17T22:00:29.5407126Z drwxr-xr-x 5 runner docker 4096 May 17 22:00 pbj.Rcheck 2021-05-17T22:00:29.5408100Z -rw-r--r-- 1 runner docker 5477477 May 17 21:58 pbj_0.1.6.tar.gz 2021-05-17T22:00:29.5409101Z -rw-r--r-- 1 runner docker 6701481 May 17 21:59 pbj_0.1.6_R_x86_64-pc-linux-gnu.tar.gz 2021-05-17T22:00:29.5451773Z ##[group]Run find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T22:00:29.5452879Z find check -name 'testthat.Rout*' -exec cat '{}' \; || true 2021-05-17T22:00:29.5502813Z shell: /usr/bin/bash --noprofile --norc -e -o pipefail {0} 2021-05-17T22:00:29.5503321Z env: 2021-05-17T22:00:29.5503769Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T22:00:29.5504235Z TIC_DEPLOY_KEY: 2021-05-17T22:00:29.5505036Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T22:00:29.5506764Z GITHUB_PAT: *** 2021-05-17T22:00:29.5507560Z COVERALLS_TOKEN: *** 2021-05-17T22:00:29.5508058Z continue-on-error: true 2021-05-17T22:00:29.5508535Z VDIFFR_RUN_TESTS: 2021-05-17T22:00:29.5509012Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T22:00:29.5509640Z TZ: UTC 2021-05-17T22:00:29.5510036Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T22:00:29.5510471Z NOT_CRAN: true 2021-05-17T22:00:29.5510865Z ##[endgroup] 2021-05-17T22:00:29.5634418Z ##[group]Run Rscript -e "tic::before_deploy()" 2021-05-17T22:00:29.5635044Z Rscript -e "tic::before_deploy()" 2021-05-17T22:00:29.5675932Z shell: /usr/bin/bash -e {0} 2021-05-17T22:00:29.5676317Z env: 2021-05-17T22:00:29.5676763Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T22:00:29.5677230Z TIC_DEPLOY_KEY: 2021-05-17T22:00:29.5678033Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T22:00:29.5679320Z GITHUB_PAT: *** 2021-05-17T22:00:29.5680123Z COVERALLS_TOKEN: *** 2021-05-17T22:00:29.5680604Z continue-on-error: true 2021-05-17T22:00:29.5681242Z VDIFFR_RUN_TESTS: 2021-05-17T22:00:29.5681701Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T22:00:29.5682139Z TZ: UTC 2021-05-17T22:00:29.5682707Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T22:00:29.5683127Z NOT_CRAN: true 2021-05-17T22:00:29.5683525Z ##[endgroup] 2021-05-17T22:00:29.8851142Z ✔ Loading tic stage configuration from tic.R 2021-05-17T22:00:30.0491331Z ##[group]Run actions/upload-release-asset@v1.0.1 2021-05-17T22:00:30.0491958Z with: 2021-05-17T22:00:30.0493057Z upload_url: https://uploads.github.com/repos/neuroconductor/pbj/releases/43088294/assets{?name,label} 2021-05-17T22:00:30.0494207Z asset_path: check/pbj_0.1.6_R_x86_64-pc-linux-gnu.tar.gz 2021-05-17T22:00:30.0494882Z asset_name: pbj_0.1.6_R_x86_64-pc-linux-gnu_R4.1.tar.gz 2021-05-17T22:00:30.0495521Z asset_content_type: application/octet-stream 2021-05-17T22:00:30.0496032Z env: 2021-05-17T22:00:30.0496473Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T22:00:30.0496937Z TIC_DEPLOY_KEY: 2021-05-17T22:00:30.0497737Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T22:00:30.0499505Z GITHUB_PAT: *** 2021-05-17T22:00:30.0500344Z COVERALLS_TOKEN: *** 2021-05-17T22:00:30.0500845Z continue-on-error: true 2021-05-17T22:00:30.0501333Z VDIFFR_RUN_TESTS: 2021-05-17T22:00:30.0501859Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T22:00:30.0502966Z TZ: UTC 2021-05-17T22:00:30.0503416Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T22:00:30.0503832Z NOT_CRAN: true 2021-05-17T22:00:30.0504822Z GITHUB_TOKEN: *** 2021-05-17T22:00:30.0505228Z ##[endgroup] 2021-05-17T22:00:33.1922467Z ##[group]Run Rscript -e "tic::deploy()" 2021-05-17T22:00:33.1923119Z Rscript -e "tic::deploy()" 2021-05-17T22:00:33.1979804Z shell: /usr/bin/bash -e {0} 2021-05-17T22:00:33.1980238Z env: 2021-05-17T22:00:33.1980703Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T22:00:33.1981223Z TIC_DEPLOY_KEY: 2021-05-17T22:00:33.1982080Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T22:00:33.1984713Z GITHUB_PAT: *** 2021-05-17T22:00:33.1985607Z COVERALLS_TOKEN: *** 2021-05-17T22:00:33.1986148Z continue-on-error: true 2021-05-17T22:00:33.1986650Z VDIFFR_RUN_TESTS: 2021-05-17T22:00:33.1987185Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T22:00:33.1987656Z TZ: UTC 2021-05-17T22:00:33.1988079Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T22:00:33.1992767Z NOT_CRAN: true 2021-05-17T22:00:33.1993406Z ##[endgroup] 2021-05-17T22:00:33.5306515Z ✔ Loading tic stage configuration from tic.R 2021-05-17T22:00:33.6908069Z ##[group]Run Rscript -e "tic::after_deploy()" 2021-05-17T22:00:33.6908725Z Rscript -e "tic::after_deploy()" 2021-05-17T22:00:33.6956703Z shell: /usr/bin/bash -e {0} 2021-05-17T22:00:33.6957087Z env: 2021-05-17T22:00:33.6957539Z R_REMOTES_NO_ERRORS_FROM_WARNINGS: true 2021-05-17T22:00:33.6958002Z TIC_DEPLOY_KEY: 2021-05-17T22:00:33.6958817Z RSPM: https://packagemanager.rstudio.com/cran/__linux__/focal/latest 2021-05-17T22:00:33.6960438Z GITHUB_PAT: *** 2021-05-17T22:00:33.6961311Z COVERALLS_TOKEN: *** 2021-05-17T22:00:33.6962023Z continue-on-error: true 2021-05-17T22:00:33.6962696Z VDIFFR_RUN_TESTS: 2021-05-17T22:00:33.6963196Z R_LIBS_USER: /home/runner/work/_temp/Library 2021-05-17T22:00:33.6963668Z TZ: UTC 2021-05-17T22:00:33.6964061Z _R_CHECK_SYSTEM_CLOCK_: FALSE 2021-05-17T22:00:33.6964501Z NOT_CRAN: true 2021-05-17T22:00:33.6964920Z ##[endgroup] 2021-05-17T22:00:34.0196397Z ✔ Loading tic stage configuration from tic.R 2021-05-17T22:00:34.3802087Z Post job cleanup. 2021-05-17T22:00:34.4321372Z [warning]Event Validation Error: The event type workflow_dispatch is not supported. Only push, pull_request events are supported at this time. 2021-05-17T22:00:34.4426888Z Post job cleanup. 2021-05-17T22:00:34.5710759Z [command]/usr/bin/git version 2021-05-17T22:00:34.5784666Z git version 2.31.1 2021-05-17T22:00:34.5827358Z [command]/usr/bin/git config --local --name-only --get-regexp core\.sshCommand 2021-05-17T22:00:34.5882931Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'core\.sshCommand' && git config --local --unset-all 'core.sshCommand' || : 2021-05-17T22:00:34.6156848Z [command]/usr/bin/git config --local --name-only --get-regexp http\.https\:\/\/github\.com\/\.extraheader 2021-05-17T22:00:34.6207073Z http.https://github.com/.extraheader 2021-05-17T22:00:34.6218972Z [command]/usr/bin/git config --local --unset-all http.https://github.com/.extraheader 2021-05-17T22:00:34.6265331Z [command]/usr/bin/git submodule foreach --recursive git config --local --name-only --get-regexp 'http\.https\:\/\/github\.com\/\.extraheader' && git config --local --unset-all 'http.https://github.com/.extraheader' || : 2021-05-17T22:00:34.6595305Z Cleaning up orphan processes