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| .createFolds | Create folds for k-fold validation |
| BM | Slow R-based Brunner-Munzel tests |
| BMfast | Fast Brunner-Munzel tests (v1) |
| BMfast2 | Fast Brunner-Munzel tests (v2) |
| BMfast2_dualmatrix | Fast Brunner-Munzel tests (v2) - dual matrix |
| BMperm | Fast Brunner-Munzel tests (v2) with permutations |
| checkAntsInput | Determine type of variable passed by user |
| checkAssumptions_ttest | Check t-test assumptions at each voxel |
| checkFilenameHeaders | Check headers of files stored on disk |
| checkImageList | Check headers of list of antsImages |
| checkMask | Compare headers between mask and other images |
| getLesionLoad | Compute regional lesion load |
| getLesionSize | Lesion size computation |
| getUniqueLesionPatches | Compute unique lesion patches |
| lesyload_mricron | Get inputs from MRIcron/npm file |
| lesymap | Lesion to Symptom Mapping |
| lesymap.predict | Prediction of new cases from lesymap output |
| lsm_BM | Brunner-Munzel tests for symptom mapping (slow) |
| lsm_BMfast | Brunner-Munzel tests for symptom mapping (fast) |
| lsm_chisq | Chi square tests for symptom mapping |
| lsm_regres | Regression tests for symptom mapping (slow) |
| lsm_regresfast | Regression tests for symptom mapping (fast) |
| lsm_regresPerm | Regression tests for symptom mapping (permutation p-vlaues) |
| lsm_sccan | Sparse canonical correlations for symptom mapping |
| lsm_svr | Support Vector Regression for symptom mapping |
| lsm_ttest | T-tests for symptom mapping (slow) |
| lsm_ttestFast | T-tests for symptom mapping (fast) |
| minSegDistance | Metric displacement of binary masks |
| optimize_SCCANsparseness | Optimization of SCCAN sparseness |
| print.lesymap | Console print of lesymap object |
| printInfo | Display info messages in console |
| registerLesionToTemplate | Register lesions in template space |
| regresfast | Fast linear regressions |
| save.lesymap | Save the output of lesymap. |
| simulateBehavior | Simulation of behavior scores from lesion maps |
| TTfast | TTfast |