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A B C D E F G H I J K L M N O P Q R S T U V W misc
| abs-method | Math for antsImage Objects |
| acos-method | Math for antsImage Objects |
| acosh-method | Math for antsImage Objects |
| all | Summary for antsImage Objects |
| ants.set.seed | Set seed for ANTsR functionality |
| antsApplyTransforms | Apply transforms to images. |
| antsApplyTransformsToPoints | Apply transforms to points. |
| antsAverageImages | Computes average of image list |
| antsCompileFlags | return ants compile flags |
| antsCopyImageInfo | Copy header info |
| antsCopyImageInfo2 | Copy header info with different input order |
| antsDir | return ANTs binary directory information |
| antsGetDirection | antsImageGetSet |
| antsGetOrigin | antsImageGetSet |
| antsGetSpacing | antsImageGetSet |
| antsImage-class | An S4 class for an antsImage |
| antsImage-math | Math for antsImage Objects |
| antsImage-operators | Operations for antsImage Objects |
| antsImage-summary | Summary for antsImage Objects |
| antsImageClone | Clone an 'antsImage'. |
| antsImageGetSet | antsImageGetSet |
| antsImageHeaderInfo | Read file info from image header |
| antsImageIterator | antsImageIterator |
| antsImageIterator-class | An S4 class for an antsImageIterator |
| antsImageIteratorGet | antsImageIteratorGet |
| antsImageIteratorGetIndex | antsImageIteratorGetIndex |
| antsImageIteratorGoToBegin | antsImageIteratorGoToBegin |
| antsImageIteratorGoToReverseBegin | antsImageIteratorGoToReverseBegin |
| antsImageIteratorIsAtEnd | antsImageIteratorIsAtEnd |
| antsImageIteratorIsAtReverseEnd | antsImageIteratorIsAtReverseEnd |
| antsImageIteratorNext | antsImageIteratorNext |
| antsImageIteratorPrevious | antsImageIteratorPrevious |
| antsImageIteratorRemaining | antsImageIteratorRemaining |
| antsImageIteratorSet | antsImageIteratorSet |
| antsImageIteratorSetIndex | antsImageIteratorSetIndex |
| antsImageMutualInformation | mutual information between two images |
| antsImagePhysicalSpaceConsistency | Check for physical space consistency |
| antsImageRead | Image Read |
| antsImageTypeCast | Cast images to either a passed pixeltype or the most precise of the inputs |
| antsImageWrite | Image Write |
| antsIncludes | return ANTs installation information |
| antsLibs | return ants library location |
| antsMatrix-class | antsMatrix Class |
| antsRegion-class | An S4 class to hold a region of an antsImage |
| antsRegistration | Perform registration between two images. |
| antsrGetPointerName | Return the antsImage pointer string |
| antsrimpute | antsrimpute |
| antsrMetric-class | An S4 class for image metrics between two antsImages |
| antsrMetricCreate | antsrMetricCreate |
| antsrMetricGetDerivative | antsrMetricGetDerivative |
| antsrMetricGetValue | antsrMetricGetValue |
| antsrMetricInitialize | antsrMetricInitialize |
| antsrMetricSetFixedImage | antsrMetricSetFixedImage |
| antsrMetricSetFixedImageMask | antsrMetricSetFixedImageMask |
| antsrMetricSetFixedTransform | antsrMetricSetFixedTransform |
| antsrMetricSetMovingImage | antsrMetricSetMovingImage |
| antsrMetricSetMovingImageMask | antsrMetricSetMovingImageMask |
| antsrMetricSetMovingTransform | antsrMetricSetMovingTransform |
| antsrMetricSetNumberOfHistogramBins | antsrMetricSetNumberOfHistogramBins |
| antsrMetricSetRadius | antsrMetricSetRadius |
| antsrMetricSetSampling | antsrMetricSetSampling |
| antsrTransform-class | An S4 class for an antsrTransform |
| antsrTransformFromDisplacementField | antsrTransformFromDisplacementField |
| antsSetDirection | antsImageGetSet |
| antsSetOrigin | antsImageGetSet |
| antsSetPixels | Set a pixel value at an index |
| antsSetSpacing | antsImageGetSet |
| antsTransformIndexToPhysicalPoint | Get Spatial Point from Index |
| antsTransformPhysicalPointToIndex | Get Index from Spatial Point |
| antsVersions | antsVersions |
| any | Summary for antsImage Objects |
| anyNA-method | Operations for antsImage Objects |
| apply | Extension of apply to allow input of antsImage |
| apply.antsImage | Extension of apply to allow input of antsImage |
| apply.default | Extension of apply to allow input of antsImage |
| applyAntsrTransform | applyAntsrTransform |
| applyAntsrTransformToImage | applyAntsrTransformToImage |
| applyAntsrTransformToPoint | applyAntsrTransformToPoint |
| applyAntsrTransformToVector | applyAntsrTransformToVector |
| Arith-method | Operations for antsImage Objects |
| as.antsImage | Convert Objects into antsImage objects |
| as.antsImage-method | Convert Objects into antsImage objects |
| as.antsMatrix | Coerce Object to as.antsMatrix |
| as.antsMatrix-method | Coerce Object to as.antsMatrix |
| as.array | Coerce antsImage objects to array |
| as.array-method | Coerce antsImage objects to array |
| as.array.antsImage | Coerce antsImage objects to array |
| as.character.antsImage | Coerce antsImage objects to array |
| as.data.frame-method | Coerce antsImage objects to array |
| as.data.frame.antsMatrix | Coerce antsImage objects to array |
| as.factor.antsImage | Coerce antsImage objects to array |
| as.list-method | Coerce antsImage objects to array |
| as.matrix-method | Coerce antsImage objects to array |
| as.matrix.antsImage | Coerce antsImage objects to array |
| as.numeric-method | Coerce antsImage objects to array |
| asin-method | Math for antsImage Objects |
| asinh-method | Math for antsImage Objects |
| atan-method | Math for antsImage Objects |
| atanh-method | Math for antsImage Objects |
| atropos | FMM Segmentation |
| bigLMStats | Efficiently compute basic statistical inference from regressions with multiple outcomes |
| boxplot.antsImage | Boxplot of Values in an Image |
| buildTemplate | ANTs template building. |
| ceiling-method | Math for antsImage Objects |
| check_ants | Check if antsImage or read in |
| check_ants-method | Check if antsImage or read in |
| check_ants-methods | Check if antsImage or read in |
| coerce_mask | Simple Mask Maker |
| components | Extract Image Attributes 'pixeltype' from antsImages |
| components-method | Extract Image Attributes 'pixeltype' from antsImages |
| components<- | Extract Image Attributes 'pixeltype' from antsImages |
| components<--method | Extract Image Attributes 'pixeltype' from antsImages |
| composeAntsrTransforms | composeAntsrTransforms |
| cos-method | Math for antsImage Objects |
| cosh-method | Math for antsImage Objects |
| cospi-method | Math for antsImage Objects |
| createAntsrTransform | createAntsrTransform |
| cropImage | crop a sub-image via a mask |
| cropIndices | crop a sub-image by image indices |
| cut.antsImage | Perform Cut on an image |
| decropImage | decrop a sub-image back into the full image |
| denoiseImage | Denoise an image |
| density.antsImage | Density of Values in an Image |
| dim-method | Coerce antsImage objects to array |
| direction | Extract Image Attributes 'pixeltype' from antsImages |
| direction-method | Extract Image Attributes 'pixeltype' from antsImages |
| direction<- | Extract Image Attributes 'pixeltype' from antsImages |
| direction<--method | Extract Image Attributes 'pixeltype' from antsImages |
| displacementFieldFromAntsrTransform | displacementFieldFromAntsrTransform |
| error_not_antsImage | Stop if not an antsImage object |
| exp-method | Math for antsImage Objects |
| extractSlice | extract a slice from an image |
| factor.antsImage | Coerce antsImage objects to array |
| floor-method | Math for antsImage Objects |
| gamma-method | Math for antsImage Objects |
| getANTsRData | getANTsRData |
| getAntsrTransformFixedParameters | getAntsrTransformFixedParameters |
| getAntsrTransformParameters | getAntsrTransformParameters |
| getCentroids | Convert an image to the geometric centroids of its signal |
| getMask | Get Mask |
| getNeighborhoodAtVoxel | Get a hypercube neighborhood at a voxel |
| getNeighborhoodInMask | Get neighborhoods for voxels within mask |
| getPixels | Get Pixels |
| hist.antsImage | Histogram of Values in an Image |
| iBind | iBind |
| ilr | Efficiently compute an image-based linear regression model (ilr) |
| ilr.predict | Predict from ilr output |
| imageFileNames2ImageList | Simple imageFileNames2ImageListing function. |
| imageListToMatrix | Read Images into a Matrix |
| imageSimilarity | imageSimilarity |
| imagesToMatrix | Read Images into a Matrix |
| iMath | iMath |
| iMathOps | Operations for iMath Operator |
| initialize-method | An S4 class for an antsImage |
| initialize-method | An S4 class for an antsImageIterator |
| initialize-method | antsMatrix Class |
| initialize-method | An S4 class for image metrics between two antsImages |
| initialize-method | An S4 class for an antsrTransform |
| invertAntsrTransform | invertAntsrTransform |
| is.antsImage | is.antsImage |
| is.finite-method | Operations for antsImage Objects |
| is.infinite-method | Operations for antsImage Objects |
| is.na-method | Operations for antsImage Objects |
| is.nan-method | Operations for antsImage Objects |
| jointLabelFusion | joint label and intensity fusion |
| kmeansSegmentation | k means image segmentation. |
| labelClusters | Simple labelClustering function. |
| labelStats | labelStats |
| lappend | Simple list append tool |
| lgamma-method | Math for antsImage Objects |
| log-method | Math for antsImage Objects |
| log10-method | Math for antsImage Objects |
| log2-method | Math for antsImage Objects |
| Logic-method | Operations for antsImage Objects |
| makeImage | Simple makeImage function. |
| maskImage | Mask input image by mask image. |
| mask_values | Simple Value extractor for antsImage Values |
| Math-method | Math for antsImage Objects |
| matrixToImages | Convert rows of a matrix to images |
| max | Summary for antsImage Objects |
| max-method | Summary for antsImage Objects |
| mean.antsImage | Mean for antsImage Objects |
| median.antsImage | Median for antsImage Objects |
| mergeChannels | merge images into a multiChannel antsImage |
| min | Summary for antsImage Objects |
| min-method | Summary for antsImage Objects |
| morphology | Morphological image operations |
| n3BiasFieldCorrection | Bias Field Correction |
| n4BiasFieldCorrection | Bias Field Correction |
| origin | Extract Image Attributes 'pixeltype' from antsImages |
| origin-method | Extract Image Attributes 'pixeltype' from antsImages |
| origin<- | Extract Image Attributes 'pixeltype' from antsImages |
| origin<--method | Extract Image Attributes 'pixeltype' from antsImages |
| pixeltype | Extract Image Attributes 'pixeltype' from antsImages |
| pixeltype-method | Extract Image Attributes 'pixeltype' from antsImages |
| pixeltype<- | Extract Image Attributes 'pixeltype' from antsImages |
| pixeltype<--method | Extract Image Attributes 'pixeltype' from antsImages |
| plot.antsImage | Plotting an image slice or multi-slice with optional color overlay. |
| prod | Summary for antsImage Objects |
| quantile.antsImage | Sample Quantiles |
| randomMask | Get a random mask |
| range | Summary for antsImage Objects |
| readAntsrTransform | readAntsrTransform |
| resampleImage | resampleImage |
| resampleImageToTarget | resampleImageToTarget |
| ri | Minimal function for creating r images |
| ripmmarc | Rotation Invariant Patch-based Multi-Modality Analysis aRChitecture |
| ripmmarcBasisImage | Generate an antsImage from ripmmarc basis data |
| ripmmarcPop | RIPMMARC population basis |
| round-method | Math for antsImage Objects |
| sd | SD generic |
| sd.antsImage | SD generic |
| sd.default | SD generic |
| setAntsrTransformFixedParameters | setAntsrTransformFixedParameters |
| setAntsrTransformParameters | setAntsrTransformParameters |
| show-method | An S4 class for an antsImage |
| show-method | An S4 class for an antsImageIterator |
| show-method | An S4 class for image metrics between two antsImages |
| show-method | An S4 class for an antsrTransform |
| sign-method | Math for antsImage Objects |
| sin-method | Math for antsImage Objects |
| sinh-method | Math for antsImage Objects |
| sinpi-method | Math for antsImage Objects |
| smoothImage | Smooth image |
| spacing | Extract Image Attributes 'pixeltype' from antsImages |
| spacing-method | Extract Image Attributes 'pixeltype' from antsImages |
| spacing<- | Extract Image Attributes 'pixeltype' from antsImages |
| spacing<--method | Extract Image Attributes 'pixeltype' from antsImages |
| splitChannels | split a multichannel antsImage |
| sqrt-method | Math for antsImage Objects |
| subset.antsImage | Subsetting antsImage Objects |
| sum | Summary for antsImage Objects |
| Summary-method | Summary for antsImage Objects |
| tan-method | Math for antsImage Objects |
| tanh-method | Math for antsImage Objects |
| tanpi-method | Math for antsImage Objects |
| thresholdImage | Threshold Image |
| trunc-method | Math for antsImage Objects |
| unique.antsImage | Unique for antsImage Objects |
| usePkg | Use any package. If package is not installed, this will install from CRAN. |
| var | Variance generic |
| var.antsImage | Variance generic |
| var.default | Variance generic |
| which-method | Operations for antsImage Objects |
| writeAntsrTransform | writeAntsrTransform |
| !-method | Math for antsImage Objects |
| !=-method | Operations for antsImage Objects |
| %%-method | Operations for antsImage Objects |
| %/%-method | Operations for antsImage Objects |
| %>% | Pipe an object forward |
| &-method | Operations for antsImage Objects |
| *-method | Operations for antsImage Objects |
| +-method | Operations for antsImage Objects |
| --method | Operations for antsImage Objects |
| .int_antsProcessArguments | Processing arguments for command line parsing |
| /-method | Operations for antsImage Objects |
| <-method | Operations for antsImage Objects |
| <=-method | Operations for antsImage Objects |
| ==-method | Operations for antsImage Objects |
| >-method | Operations for antsImage Objects |
| >=-method | Operations for antsImage Objects |
| [-method | Extract or Replace Parts of antsImage Object |
| [<--method | Extract or Replace Parts of antsImage Object |
| ^-method | Operations for antsImage Objects |
| |-method | Operations for antsImage Objects |