blur_mask | Blur Mask and Get Indices for Patches |
flexconn_conv_chain | FLEXCONN Convolution Chain |
flexconn_image_peak | Normalize Image Based on the Peak |
flexconn_model | FLEXCONN Model |
flexconn_predict | Predict from FLEXCONN model |
flexconn_predict_patch | Predict from FLEXCONN model |
flexconn_predict_with_patches | Predict from FLEXCONN model |
flexconn_predict_with_volume | Predict from FLEXCONN model |
get_mask_patches | Get Patches from 3D Volume |
get_matsize | Get Matrix Size to Input to Model |
get_num_patches | Get Patches from 3D Volume |
get_patches | Get Patches from T1 and FLAIR image |
get_patch_from_volume | Get Patches from 3D Volume |
get_volume_from_patches | Convert Patches to a Volume |
image_peak | Normalize Image Based on the Peak |
invert_pad_image | Pad Image |
mask_indices | Get Mask Indices |
normalize_image | Normalize Image Based on the Peak |
norm_pad | Get Patches from 3D Volume |
numpy_percentile | Python Numpy Percentile |
pad_image | Pad Image |
patches_list | Make a patches list for a population of images |
patches_to_volume | Convert Patches to a Volume |
patchsize_to_padsize | Patch Size to Pad Size |
remove_small_components | Remove connected objects with volume <27 voxels |
volume_to_patches | Convert Volume to Patches |