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| blur_mask | Blur Mask and Get Indices for Patches |
| flexconn_conv_chain | FLEXCONN Convolution Chain |
| flexconn_image_peak | Normalize Image Based on the Peak |
| flexconn_model | FLEXCONN Model |
| flexconn_predict | Predict from FLEXCONN model |
| flexconn_predict_patch | Predict from FLEXCONN model |
| flexconn_predict_with_patches | Predict from FLEXCONN model |
| flexconn_predict_with_volume | Predict from FLEXCONN model |
| get_mask_patches | Get Patches from 3D Volume |
| get_matsize | Get Matrix Size to Input to Model |
| get_num_patches | Get Patches from 3D Volume |
| get_patches | Get Patches from T1 and FLAIR image |
| get_patch_from_volume | Get Patches from 3D Volume |
| get_volume_from_patches | Convert Patches to a Volume |
| image_peak | Normalize Image Based on the Peak |
| invert_pad_image | Pad Image |
| mask_indices | Get Mask Indices |
| normalize_image | Normalize Image Based on the Peak |
| norm_pad | Get Patches from 3D Volume |
| numpy_percentile | Python Numpy Percentile |
| pad_image | Pad Image |
| patches_list | Make a patches list for a population of images |
| patches_to_volume | Convert Patches to a Volume |
| patchsize_to_padsize | Patch Size to Pad Size |
| remove_small_components | Remove connected objects with volume <27 voxels |
| volume_to_patches | Convert Volume to Patches |