Wrapper Functions for 'AFNI' (Analysis of Functional 'NeuroImages')

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Documentation for package ‘afnir’ version 0.4.6

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ABoverlap AFNI 3dABoverlap function
aboverlap AFNI 3dABoverlap function
afnidir Get AFNI Directory
afniversion GET AFNI Version
afni_3dABoverlap AFNI 3dABoverlap function
afni_3dAFNItoNIFTI Convert AFNI File to NIFTI Image
afni_3dAllineate AFNI 3dAllineate function
afni_3dAutomask AFNI 3dAutomask function
afni_3dcalc AFNI 3dcalc function
afni_3dClipLevel AFNI 3dClipLevel function
afni_3dDespike Convert AFNI File to NIFTI Image
afni_3dFourier AFNI 3dFourier function
afni_3dNwarpApply AFNI 3dNwarpApply function
afni_3dQwarp AFNI 3dQwarp function
afni_3drefit AFNI 3drefit function
afni_3dresample AFNI 3dresample function
afni_3dSkullStrip AFNI 3dSkullStrip function
afni_3dTshift Convert AFNI File to NIFTI Image
afni_3dTstat AFNI 3dTstat function
afni_3dtstat AFNI 3dTstat function
afni_3dvolreg Perform Volume Registration for Motion Correction
afni_3dWinsor AFNI 3dWinsor function
afni_cmd afni Command Wrapper
afni_dir Get AFNI Directory
afni_edge_mask AFNI Edge Mask
afni_quote_expression Quote an Expression
afni_read_affine Read AFNI Affine Matrix
afni_subset_4d Subset 4D images
afni_suffix Get AFNI suffix for file
afni_to_nifti Convert AFNI File to NIFTI Image
afni_tt_vent_mask Create AFNI Ventricle Mask in Talairach space
afni_version GET AFNI Version
afni_warp_apply AFNI 3dNwarpApply function
allineate AFNI 3dAllineate function
Automask AFNI 3dAutomask function
automask AFNI 3dAutomask function
brik.stub Grab filename without BRIK, HEAD or nii
checkimg-method Force object to filename
ClipLevel AFNI 3dClipLevel function
despike Convert AFNI File to NIFTI Image
get_afni Create command declaring for the AFNI directory
have_afni Logical check if AFNI is accessible
nifti_to_afni Convert NIfTI Image to AFNI FIle
NwarpApply AFNI 3dNwarpApply function
Qwarp AFNI 3dQwarp function
qwarp AFNI 3dQwarp function
refit AFNI 3drefit function
resample AFNI 3dresample function
SkullStrip AFNI 3dSkullStrip function
tshift Convert AFNI File to NIFTI Image
Tstat AFNI 3dTstat function
tstat AFNI 3dTstat function
volreg Perform Volume Registration for Motion Correction
Winsor AFNI 3dWinsor function
winsor AFNI 3dWinsor function