parse_camino_args.RdWrapper for finding the arguments for the Camino function
parse_camino_args(funcname)| funcname | Name of function to be called |
|---|
Character vector
read_camino_helpfile("voxel2scanner")
#> [1] ".\\\" $Id: voxel2scanner.1,v 1.2 2005/06/15 08:42:33 ucacdxa Exp $"
#> [2] ""
#> [3] ".TH voxel2scanner 1"
#> [4] ""
#> [5] ".SH NAME"
#> [6] "voxel2scanner \\- Converts voxel-order data to scanner-order data."
#> [7] ""
#> [8] ".SH SYNOPSIS"
#> [9] ".B voxel2scanner"
#> [10] "-voxels <number of voxels> -components <measurements per voxel> [\\fIoptions\\fR]"
#> [11] ""
#> [12] ".SH DESCRIPTION"
#> [13] "Converts voxel-order data files, used by Camino, to scanner order. See scanner2voxel(1)"
#> [14] "for a description of these formats."
#> [15] ""
#> [16] "The output data type is big endian floating points."
#> [17] ""
#> [18] ".SH EXAMPLES"
#> [19] "Convert voxel-order data file VoxelOrder.Bfloat, for which the measurement volume has"
#> [20] "size 128x128x60 and the acquisition scheme acquires 6 measurements with b=0 and 54"
#> [21] "diffusion-weighted measurements, to scanner order:"
#> [22] ""
#> [23] "voxel2scanner -voxels 983040 -components 60 < VoxelOrder.Bfloat > ScannerOrder.img"
#> [24] ""
#> [25] "Equivalently:"
#> [26] ""
#> [27] "voxel2scanner -voxels 983040 -components 60 -inputfile VoxelOrder.Bfloat >"
#> [28] "ScannerOrder.img"
#> [29] ""
#> [30] ""
#> [31] "Fit the diffusion tensor to the scanner-order data in ScannerOrder.img, assuming the"
#> [32] "acquisition scheme is specified in A.scheme, and convert the output to scanner order:"
#> [33] ""
#> [34] "scanner2voxel -voxels 983040 -components 60 < ScannerOrder.img | dtfit - A.scheme"
#> [35] "-nonlinear | voxel2scanner -voxels 983040 -components 8 -inputdatatype double >"
#> [36] "DiffTensorA.img"
#> [37] ""
#> [38] ".SH OPTIONS"
#> [39] ".TP"
#> [40] ".B \\-voxels <number of voxels>"
#> [41] "The number of voxels in the input data."
#> [42] ""
#> [43] ".TP"
#> [44] ".B \\-components <number of measurements>"
#> [45] "The number of measurements per voxel."
#> [46] ""
#> [47] ".TP"
#> [48] ".B \\-inputfile <\\fIinput filename\\fR>"
#> [49] "The name of the input file."
#> [50] ""
#> [51] ".TP"
#> [52] ".B \\-inputdatatype <\\fIdata type of input\\fR>"
#> [53] "Specifies the data type of the input file. The data type can be any of the following"
#> [54] "strings: \"char\", \"short\", \"int\", \"long\", \"float\" or \"double\"."
#> [55] ""
#> [56] ".TP"
#> [57] ".B \\-outputdatatype <\\fIdata type of output\\fR>"
#> [58] "Specifies the data type of the output data. The data type can be any of the following"
#> [59] "strings: \"char\", \"short\", \"int\", \"long\", \"float\" or \"double\"."
#> [60] ""
#> [61] ".SH \"AUTHORS\""
#> [62] "Daniel Alexander <camino@cs.ucl.ac.uk>"
#> [63] ""
#> [64] ".SH \"SEE ALSO\""
#> [65] "scanner2voxel(1)"
#> [66] ""
#> [67] ".SH BUGS"