dicom_header_as_matrix.RdGet the header information as a matrix
dicom_header_as_matrix(dicom_data, slice_idx = NA)| dicom_data | DICOM data returned by |
|---|---|
| slice_idx | 1-based slice index. If NA, all slices will be included. Won't work if multiple slices are included in only one image file. |
Data frame containing one record for each header attribute. Note that if all slices are included, fields that appear more than once (including tag and name) in a given slice header will be excluded from the values reported for that slice. Each column contains all header attributes for one slice, therefore, values are represented as strings even if they are conceptually numeric.
data(sample_dicom_img)
dicom_header_as_matrix(sample_dicom_img)
#> group element name code
#> 1 0002 0000 GroupLength UL
#> 2 0002 0001 FileMetaInformationVersion OB
#> 3 0002 0002 MediaStorageSOPClassUID UI
#> 4 0002 0003 MediaStorageSOPInstanceUID UI
#> 5 0002 0010 TransferSyntaxUID UI
#> 6 0002 0012 ImplementationClassUID UI
#> 7 0002 0013 ImplementationVersionName SH
#> 8 0002 0016 SourceApplicationEntityTitle AE
#> 9 0008 0005 SpecificCharacterSet CS
#> 10 0008 0008 ImageType CS
#> 11 0008 0012 InstanceCreationDate DA
#> 12 0008 0013 InstanceCreationTime TM
#> 13 0008 0014 InstanceCreatorUID UI
#> 14 0008 0016 SOPClassUID UI
#> 15 0008 0018 SOPInstanceUID UI
#> 16 0008 0020 StudyDate DA
#> 17 0008 0021 SeriesDate DA
#> 18 0008 0023 ContentDate DA
#> 19 0008 0030 StudyTime TM
#> 20 0008 0031 SeriesTime TM
#> 21 0008 0033 ContentTime TM
#> 22 0008 0050 AccessionNumber SH
#> 23 0008 0060 Modality CS
#> 24 0008 0070 Manufacturer LO
#> 25 0008 0090 ReferringPhysiciansName PN
#> 26 0008 0201 TimezoneOffsetFromUTC SH
#> 27 0008 1030 StudyDescription LO
#> 28 0008 103E SeriesDescription LO
#> 29 0008 1090 ManufacturersModelName LO
#> 30 0010 0010 PatientsName PN
#> 31 0010 0020 PatientID LO
#> 32 0010 0030 PatientsBirthDate DA
#> 33 0010 0040 PatientsSex CS
#> 34 0010 1010 PatientsAge AS
#> 35 0010 1030 PatientsWeight DS
#> 36 0012 0062 PatientIdentityRemoved CS
#> 37 0012 0063 DeidentificationMethod LO
#> 38 0018 0010 ContrastBolusAgent LO
#> 39 0018 0020 ScanningSequence CS
#> 40 0018 0021 SequenceVariant CS
#> 41 0018 0022 ScanOptions CS
#> 42 0018 0023 MRAcquisitionType CS
#> 43 0018 0050 SliceThickness DS
#> 44 0018 0080 RepetitionTime DS
#> 45 0018 0081 EchoTime DS
#> 46 0018 0083 NumberOfAverages DS
#> 47 0018 0084 ImagingFrequency DS
#> 48 0018 0087 MagneticFieldStrength DS
#> 49 0018 0091 EchoTraInLength IS
#> 50 0018 0094 PercentPhaseFieldOfView DS
#> 51 0018 1020 SoftwareVersions LO
#> 52 0018 1030 ProtocolName LO
#> 53 0018 1310 AcquisitionMatrix US
#> 54 0018 1314 FlipAngle DS
#> 55 0018 5100 PatientPosition CS
#> 56 0020 000D StudyInstanceUID UI
#> 57 0020 000E SeriesInstanceUID UI
#> 58 0020 0010 StudyID SH
#> 59 0020 0011 SeriesNumber IS
#> 60 0020 0012 AcquisitionNumber IS
#> 61 0020 0013 InstanceNumber IS
#> 62 0020 0032 ImagePositionPatient DS
#> 63 0020 0037 ImageOrientationPatient DS
#> 64 0020 0052 FrameOfReferenceUID UI
#> 65 0020 0100 TemporalPositionIdentifier IS
#> 66 0020 0105 NumberOfTemporalPositions IS
#> 67 0020 0110 TemporalResolution DS
#> 68 0020 1002 ImagesInAcquisition IS
#> 69 0020 1040 PositionReferenceIndicator LO
#> 70 0020 1041 SliceLocation DS
#> 71 0028 0002 SamplesperPixel US
#> 72 0028 0004 PhotometricInterpretation CS
#> 73 0028 0010 Rows US
#> 74 0028 0011 Columns US
#> 75 0028 0030 PixelSpacing DS
#> 76 0028 0100 BitsAllocated US
#> 77 0028 0101 BitsStored US
#> 78 0028 0102 HighBit US
#> 79 0028 0103 PixelRepresentation US
#> 80 0028 1050 WindowCenter DS
#> 81 0028 1051 WindowWidth DS
#> 82 7FE0 0010 PixelData OB
#> slice_1
#> 1 194
#> 2 \001
#> 3 1.2.840.10008.5.1.4.1.1.4
#> 4 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.476
#> 5 1.2.840.10008.1.2.1
#> 6 1.3.6.1.4.1.5962.2
#> 7 DCTOOL100
#> 8 CLUNIE1
#> 9 ISO_IR 100
#> 10 ORIGINAL PRIMARY OTHER
#> 11 20040624
#> 12 020525
#> 13 1.3.6.1.4.1.5962.3
#> 14 1.2.840.10008.5.1.4.1.1.4
#> 15 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.476
#> 16 20030505
#> 17 20030505
#> 18 20030505
#> 19 050743
#> 20 050814
#> 21 050829
#> 22 428
#> 23 MR
#> 24 Philips Medical Systems, Inc.
#> 25
#> 26 +0000
#> 27 Carotids
#> 28 FAST LOCALIZER
#> 29 Eclipse 1.5T
#> 30 Doe Peter
#> 31 98890234
#> 32
#> 33 M
#> 34 045Y
#> 35 81.632700
#> 36 YES
#> 37 dcanon no identifiers keep descriptions keep manufacturer keep retired keep private no uids keep pet demographics keep dates dcdtchg change dates
#> 38
#> 39 GR
#> 40 SS
#> 41
#> 42
#> 43 1.000000e+01
#> 44 16
#> 45 3.700000e+00
#> 46 1
#> 47 6.36978e+01
#> 48 1.5
#> 49 1
#> 50 100
#> 51 VIA5.2
#> 52 FAST LOCALIZER
#> 53 256
#> 54 20
#> 55 HFS
#> 56 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.427
#> 57 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.475
#> 58 428
#> 59 1
#> 60 2
#> 61 1
#> 62 0.000000e+00 -1.750000e+02 1.750000e+02
#> 63 0.00000e+00 1.00000e+00 -0.00000e+00 -0.00000e+00 0.00000e+00 -1.00000e+00
#> 64 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.427
#> 65 1
#> 66 1
#> 67 3116
#> 68 1
#> 69 Carotids
#> 70 0.000000
#> 71 1
#> 72 MONOCHROME2
#> 73 256
#> 74 256
#> 75 1.367188e+00 1.367188e+00
#> 76 16
#> 77 16
#> 78 15
#> 79 1
#> 80 243
#> 81 798
#> 82 PixelData
#> slice_2
#> 1 194
#> 2 \001
#> 3 1.2.840.10008.5.1.4.1.1.4
#> 4 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.135
#> 5 1.2.840.10008.1.2.1
#> 6 1.3.6.1.4.1.5962.2
#> 7 DCTOOL100
#> 8 CLUNIE1
#> 9 ISO_IR 100
#> 10 ORIGINAL PRIMARY OTHER
#> 11 20040624
#> 12 020353
#> 13 1.3.6.1.4.1.5962.3
#> 14 1.2.840.10008.5.1.4.1.1.4
#> 15 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.135
#> 16 20030505
#> 17 20030505
#> 18 20030505
#> 19 025109
#> 20 025141
#> 21 025153
#> 22 134
#> 23 MR
#> 24 Philips Medical Systems, Inc.
#> 25
#> 26 +0000
#> 27 Brain
#> 28 FAST LOCALIZER
#> 29 Eclipse 1.5T
#> 30 Doe Peter
#> 31 98890234
#> 32
#> 33 M
#> 34 045Y
#> 35 81.632700
#> 36 YES
#> 37 dcanon no identifiers keep descriptions keep manufacturer keep retired keep private no uids keep pet demographics keep dates dcdtchg change dates
#> 38
#> 39 GR
#> 40 SS SP
#> 41
#> 42
#> 43 1.000000e+01
#> 44 10
#> 45 3.700000e+00
#> 46 1
#> 47 6.36978e+01
#> 48 1.5
#> 49 1
#> 50 100
#> 51 VIA5.2
#> 52 FAST LOCALIZER
#> 53 256
#> 54 20
#> 55 HFS
#> 56 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.133
#> 57 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.134
#> 58 134
#> 59 1
#> 60 2
#> 61 1
#> 62 0.000000e+00 -1.750000e+02 1.750000e+02
#> 63 0.00000e+00 1.00000e+00 -0.00000e+00 -0.00000e+00 0.00000e+00 -1.00000e+00
#> 64 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.133
#> 65 1
#> 66 1
#> 67 2340
#> 68 1
#> 69 Brain
#> 70 0.000000
#> 71 1
#> 72 MONOCHROME2
#> 73 256
#> 74 256
#> 75 1.367188e+00 1.367188e+00
#> 76 16
#> 77 16
#> 78 15
#> 79 1
#> 80 349
#> 81 829
#> 82 PixelData
#> slice_3
#> 1 192
#> 2 \001
#> 3 1.2.840.10008.5.1.4.1.1.4
#> 4 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.16
#> 5 1.2.840.10008.1.2.1
#> 6 1.3.6.1.4.1.5962.2
#> 7 DCTOOL100
#> 8 CLUNIE1
#> 9 ISO_IR 100
#> 10 ORIGINAL PRIMARY OTHER
#> 11 20040624
#> 12 020321
#> 13 1.3.6.1.4.1.5962.3
#> 14 1.2.840.10008.5.1.4.1.1.4
#> 15 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.16
#> 16 20030505
#> 17 20030505
#> 18 20030505
#> 19 045357
#> 20 045440
#> 21 045455
#> 22 2
#> 23 MR
#> 24 Philips Medical Systems, Inc.
#> 25
#> 26 +0000
#> 27 Brain-MRA
#> 28 FAST LOCALIZER
#> 29 Eclipse 1.5T
#> 30 Doe Peter
#> 31 98890234
#> 32
#> 33 M
#> 34 045Y
#> 35 81.632700
#> 36 YES
#> 37 dcanon no identifiers keep descriptions keep manufacturer keep retired keep private no uids keep pet demographics keep dates dcdtchg change dates
#> 38
#> 39 GR
#> 40 SS SP
#> 41
#> 42
#> 43 1.000000e+01
#> 44 10
#> 45 3.700000e+00
#> 46 1
#> 47 6.36978e+01
#> 48 1.5
#> 49 1
#> 50 100
#> 51 VIA5.2
#> 52 FAST LOCALIZER
#> 53 256
#> 54 20
#> 55 HFS
#> 56 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.1
#> 57 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.15
#> 58 2
#> 59 1
#> 60 2
#> 61 1
#> 62 0.000000e+00 -1.750000e+02 1.750000e+02
#> 63 0.00000e+00 1.00000e+00 -0.00000e+00 -0.00000e+00 0.00000e+00 -1.00000e+00
#> 64 1.3.6.1.4.1.5962.1.1.0.0.0.1196533885.18148.0.1
#> 65 1
#> 66 1
#> 67 2340
#> 68 1
#> 69 Brain-MRA
#> 70 0.000000
#> 71 1
#> 72 MONOCHROME2
#> 73 256
#> 74 256
#> 75 1.367188e+00 1.367188e+00
#> 76 16
#> 77 16
#> 78 15
#> 79 1
#> 80 282
#> 81 782
#> 82 PixelData