MS Imaging Data in a data.frame

ms_data(cohort = c("cross_sectional", "longitudinal"), data = c("raw",
  "coregistered"))

Arguments

cohort

Cohort to be used - cross-sectional or longitudinal

data

data to be used - raw or coregistered/processed

Value

A data.frame of imaging modalities and masks, and demographics

Examples

ms_data()
#>            id                                              file           mod
#> 1   patient01 cross_sectional/raw/patient01/consensus_gt.nii.gz Gold_Standard
#> 2   patient01        cross_sectional/raw/patient01/FLAIR.nii.gz         FLAIR
#> 3   patient01          cross_sectional/raw/patient01/T1W.nii.gz            T1
#> 4   patient01        cross_sectional/raw/patient01/T1WKS.nii.gz        T1Post
#> 5   patient01          cross_sectional/raw/patient01/T2W.nii.gz            T2
#> 6   patient02 cross_sectional/raw/patient02/consensus_gt.nii.gz Gold_Standard
#> 7   patient02        cross_sectional/raw/patient02/FLAIR.nii.gz         FLAIR
#> 8   patient02          cross_sectional/raw/patient02/T1W.nii.gz            T1
#> 9   patient02        cross_sectional/raw/patient02/T1WKS.nii.gz        T1Post
#> 10  patient02          cross_sectional/raw/patient02/T2W.nii.gz            T2
#> 11  patient03 cross_sectional/raw/patient03/consensus_gt.nii.gz Gold_Standard
#> 12  patient03        cross_sectional/raw/patient03/FLAIR.nii.gz         FLAIR
#> 13  patient03          cross_sectional/raw/patient03/T1W.nii.gz            T1
#> 14  patient03        cross_sectional/raw/patient03/T1WKS.nii.gz        T1Post
#> 15  patient03          cross_sectional/raw/patient03/T2W.nii.gz            T2
#> 16  patient04 cross_sectional/raw/patient04/consensus_gt.nii.gz Gold_Standard
#> 17  patient04        cross_sectional/raw/patient04/FLAIR.nii.gz         FLAIR
#> 18  patient04          cross_sectional/raw/patient04/T1W.nii.gz            T1
#> 19  patient04        cross_sectional/raw/patient04/T1WKS.nii.gz        T1Post
#> 20  patient04          cross_sectional/raw/patient04/T2W.nii.gz            T2
#> 21  patient05 cross_sectional/raw/patient05/consensus_gt.nii.gz Gold_Standard
#> 22  patient05        cross_sectional/raw/patient05/FLAIR.nii.gz         FLAIR
#> 23  patient05          cross_sectional/raw/patient05/T1W.nii.gz            T1
#> 24  patient05        cross_sectional/raw/patient05/T1WKS.nii.gz        T1Post
#> 25  patient05          cross_sectional/raw/patient05/T2W.nii.gz            T2
#> 26  patient06 cross_sectional/raw/patient06/consensus_gt.nii.gz Gold_Standard
#> 27  patient06        cross_sectional/raw/patient06/FLAIR.nii.gz         FLAIR
#> 28  patient06          cross_sectional/raw/patient06/T1W.nii.gz            T1
#> 29  patient06        cross_sectional/raw/patient06/T1WKS.nii.gz        T1Post
#> 30  patient06          cross_sectional/raw/patient06/T2W.nii.gz            T2
#> 31  patient07 cross_sectional/raw/patient07/consensus_gt.nii.gz Gold_Standard
#> 32  patient07        cross_sectional/raw/patient07/FLAIR.nii.gz         FLAIR
#> 33  patient07          cross_sectional/raw/patient07/T1W.nii.gz            T1
#> 34  patient07        cross_sectional/raw/patient07/T1WKS.nii.gz        T1Post
#> 35  patient07          cross_sectional/raw/patient07/T2W.nii.gz            T2
#> 36  patient08 cross_sectional/raw/patient08/consensus_gt.nii.gz Gold_Standard
#> 37  patient08        cross_sectional/raw/patient08/FLAIR.nii.gz         FLAIR
#> 38  patient08          cross_sectional/raw/patient08/T1W.nii.gz            T1
#> 39  patient08        cross_sectional/raw/patient08/T1WKS.nii.gz        T1Post
#> 40  patient08          cross_sectional/raw/patient08/T2W.nii.gz            T2
#> 41  patient09 cross_sectional/raw/patient09/consensus_gt.nii.gz Gold_Standard
#> 42  patient09        cross_sectional/raw/patient09/FLAIR.nii.gz         FLAIR
#> 43  patient09          cross_sectional/raw/patient09/T1W.nii.gz            T1
#> 44  patient09        cross_sectional/raw/patient09/T1WKS.nii.gz        T1Post
#> 45  patient09          cross_sectional/raw/patient09/T2W.nii.gz            T2
#> 46  patient10 cross_sectional/raw/patient10/consensus_gt.nii.gz Gold_Standard
#> 47  patient10        cross_sectional/raw/patient10/FLAIR.nii.gz         FLAIR
#> 48  patient10          cross_sectional/raw/patient10/T1W.nii.gz            T1
#> 49  patient10        cross_sectional/raw/patient10/T1WKS.nii.gz        T1Post
#> 50  patient10          cross_sectional/raw/patient10/T2W.nii.gz            T2
#> 51  patient11 cross_sectional/raw/patient11/consensus_gt.nii.gz Gold_Standard
#> 52  patient11        cross_sectional/raw/patient11/FLAIR.nii.gz         FLAIR
#> 53  patient11          cross_sectional/raw/patient11/T1W.nii.gz            T1
#> 54  patient11        cross_sectional/raw/patient11/T1WKS.nii.gz        T1Post
#> 55  patient11          cross_sectional/raw/patient11/T2W.nii.gz            T2
#> 56  patient12 cross_sectional/raw/patient12/consensus_gt.nii.gz Gold_Standard
#> 57  patient12        cross_sectional/raw/patient12/FLAIR.nii.gz         FLAIR
#> 58  patient12          cross_sectional/raw/patient12/T1W.nii.gz            T1
#> 59  patient12        cross_sectional/raw/patient12/T1WKS.nii.gz        T1Post
#> 60  patient12          cross_sectional/raw/patient12/T2W.nii.gz            T2
#> 61  patient13 cross_sectional/raw/patient13/consensus_gt.nii.gz Gold_Standard
#> 62  patient13        cross_sectional/raw/patient13/FLAIR.nii.gz         FLAIR
#> 63  patient13          cross_sectional/raw/patient13/T1W.nii.gz            T1
#> 64  patient13        cross_sectional/raw/patient13/T1WKS.nii.gz        T1Post
#> 65  patient13          cross_sectional/raw/patient13/T2W.nii.gz            T2
#> 66  patient14 cross_sectional/raw/patient14/consensus_gt.nii.gz Gold_Standard
#> 67  patient14        cross_sectional/raw/patient14/FLAIR.nii.gz         FLAIR
#> 68  patient14          cross_sectional/raw/patient14/T1W.nii.gz            T1
#> 69  patient14        cross_sectional/raw/patient14/T1WKS.nii.gz        T1Post
#> 70  patient14          cross_sectional/raw/patient14/T2W.nii.gz            T2
#> 71  patient15 cross_sectional/raw/patient15/consensus_gt.nii.gz Gold_Standard
#> 72  patient15        cross_sectional/raw/patient15/FLAIR.nii.gz         FLAIR
#> 73  patient15          cross_sectional/raw/patient15/T1W.nii.gz            T1
#> 74  patient15        cross_sectional/raw/patient15/T1WKS.nii.gz        T1Post
#> 75  patient15          cross_sectional/raw/patient15/T2W.nii.gz            T2
#> 76  patient16 cross_sectional/raw/patient16/consensus_gt.nii.gz Gold_Standard
#> 77  patient16        cross_sectional/raw/patient16/FLAIR.nii.gz         FLAIR
#> 78  patient16          cross_sectional/raw/patient16/T1W.nii.gz            T1
#> 79  patient16        cross_sectional/raw/patient16/T1WKS.nii.gz        T1Post
#> 80  patient16          cross_sectional/raw/patient16/T2W.nii.gz            T2
#> 81  patient17 cross_sectional/raw/patient17/consensus_gt.nii.gz Gold_Standard
#> 82  patient17        cross_sectional/raw/patient17/FLAIR.nii.gz         FLAIR
#> 83  patient17          cross_sectional/raw/patient17/T1W.nii.gz            T1
#> 84  patient17        cross_sectional/raw/patient17/T1WKS.nii.gz        T1Post
#> 85  patient17          cross_sectional/raw/patient17/T2W.nii.gz            T2
#> 86  patient18 cross_sectional/raw/patient18/consensus_gt.nii.gz Gold_Standard
#> 87  patient18        cross_sectional/raw/patient18/FLAIR.nii.gz         FLAIR
#> 88  patient18          cross_sectional/raw/patient18/T1W.nii.gz            T1
#> 89  patient18        cross_sectional/raw/patient18/T1WKS.nii.gz        T1Post
#> 90  patient18          cross_sectional/raw/patient18/T2W.nii.gz            T2
#> 91  patient19 cross_sectional/raw/patient19/consensus_gt.nii.gz Gold_Standard
#> 92  patient19        cross_sectional/raw/patient19/FLAIR.nii.gz         FLAIR
#> 93  patient19          cross_sectional/raw/patient19/T1W.nii.gz            T1
#> 94  patient19        cross_sectional/raw/patient19/T1WKS.nii.gz        T1Post
#> 95  patient19          cross_sectional/raw/patient19/T2W.nii.gz            T2
#> 96  patient20 cross_sectional/raw/patient20/consensus_gt.nii.gz Gold_Standard
#> 97  patient20        cross_sectional/raw/patient20/FLAIR.nii.gz         FLAIR
#> 98  patient20          cross_sectional/raw/patient20/T1W.nii.gz            T1
#> 99  patient20        cross_sectional/raw/patient20/T1WKS.nii.gz        T1Post
#> 100 patient20          cross_sectional/raw/patient20/T2W.nii.gz            T2
#> 101 patient21 cross_sectional/raw/patient21/consensus_gt.nii.gz Gold_Standard
#> 102 patient21        cross_sectional/raw/patient21/FLAIR.nii.gz         FLAIR
#> 103 patient21          cross_sectional/raw/patient21/T1W.nii.gz            T1
#> 104 patient21        cross_sectional/raw/patient21/T1WKS.nii.gz        T1Post
#> 105 patient21          cross_sectional/raw/patient21/T2W.nii.gz            T2
#> 106 patient22 cross_sectional/raw/patient22/consensus_gt.nii.gz Gold_Standard
#> 107 patient22        cross_sectional/raw/patient22/FLAIR.nii.gz         FLAIR
#> 108 patient22          cross_sectional/raw/patient22/T1W.nii.gz            T1
#> 109 patient22        cross_sectional/raw/patient22/T1WKS.nii.gz        T1Post
#> 110 patient22          cross_sectional/raw/patient22/T2W.nii.gz            T2
#> 111 patient23 cross_sectional/raw/patient23/consensus_gt.nii.gz Gold_Standard
#> 112 patient23        cross_sectional/raw/patient23/FLAIR.nii.gz         FLAIR
#> 113 patient23          cross_sectional/raw/patient23/T1W.nii.gz            T1
#> 114 patient23        cross_sectional/raw/patient23/T1WKS.nii.gz        T1Post
#> 115 patient23          cross_sectional/raw/patient23/T2W.nii.gz            T2
#> 116 patient24 cross_sectional/raw/patient24/consensus_gt.nii.gz Gold_Standard
#> 117 patient24        cross_sectional/raw/patient24/FLAIR.nii.gz         FLAIR
#> 118 patient24          cross_sectional/raw/patient24/T1W.nii.gz            T1
#> 119 patient24        cross_sectional/raw/patient24/T1WKS.nii.gz        T1Post
#> 120 patient24          cross_sectional/raw/patient24/T2W.nii.gz            T2
#> 121 patient25 cross_sectional/raw/patient25/consensus_gt.nii.gz Gold_Standard
#> 122 patient25        cross_sectional/raw/patient25/FLAIR.nii.gz         FLAIR
#> 123 patient25          cross_sectional/raw/patient25/T1W.nii.gz            T1
#> 124 patient25        cross_sectional/raw/patient25/T1WKS.nii.gz        T1Post
#> 125 patient25          cross_sectional/raw/patient25/T2W.nii.gz            T2
#> 126 patient26 cross_sectional/raw/patient26/consensus_gt.nii.gz Gold_Standard
#> 127 patient26        cross_sectional/raw/patient26/FLAIR.nii.gz         FLAIR
#> 128 patient26          cross_sectional/raw/patient26/T1W.nii.gz            T1
#> 129 patient26        cross_sectional/raw/patient26/T1WKS.nii.gz        T1Post
#> 130 patient26          cross_sectional/raw/patient26/T2W.nii.gz            T2
#> 131 patient27 cross_sectional/raw/patient27/consensus_gt.nii.gz Gold_Standard
#> 132 patient27        cross_sectional/raw/patient27/FLAIR.nii.gz         FLAIR
#> 133 patient27          cross_sectional/raw/patient27/T1W.nii.gz            T1
#> 134 patient27        cross_sectional/raw/patient27/T1WKS.nii.gz        T1Post
#> 135 patient27          cross_sectional/raw/patient27/T2W.nii.gz            T2
#> 136 patient28 cross_sectional/raw/patient28/consensus_gt.nii.gz Gold_Standard
#> 137 patient28        cross_sectional/raw/patient28/FLAIR.nii.gz         FLAIR
#> 138 patient28          cross_sectional/raw/patient28/T1W.nii.gz            T1
#> 139 patient28        cross_sectional/raw/patient28/T1WKS.nii.gz        T1Post
#> 140 patient28          cross_sectional/raw/patient28/T2W.nii.gz            T2
#> 141 patient29 cross_sectional/raw/patient29/consensus_gt.nii.gz Gold_Standard
#> 142 patient29        cross_sectional/raw/patient29/FLAIR.nii.gz         FLAIR
#> 143 patient29          cross_sectional/raw/patient29/T1W.nii.gz            T1
#> 144 patient29        cross_sectional/raw/patient29/T1WKS.nii.gz        T1Post
#> 145 patient29          cross_sectional/raw/patient29/T2W.nii.gz            T2
#> 146 patient30 cross_sectional/raw/patient30/consensus_gt.nii.gz Gold_Standard
#> 147 patient30        cross_sectional/raw/patient30/FLAIR.nii.gz         FLAIR
#> 148 patient30          cross_sectional/raw/patient30/T1W.nii.gz            T1
#> 149 patient30        cross_sectional/raw/patient30/T1WKS.nii.gz        T1Post
#> 150 patient30          cross_sectional/raw/patient30/T2W.nii.gz            T2
#>                                                                                         url
#> 1   http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/consensus_gt.nii.gz
#> 2          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/FLAIR.nii.gz
#> 3            http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1W.nii.gz
#> 4          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T1WKS.nii.gz
#> 5            http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient01/T2W.nii.gz
#> 6   http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient02/consensus_gt.nii.gz
#> 7          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient02/FLAIR.nii.gz
#> 8            http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient02/T1W.nii.gz
#> 9          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient02/T1WKS.nii.gz
#> 10           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient02/T2W.nii.gz
#> 11  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient03/consensus_gt.nii.gz
#> 12         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient03/FLAIR.nii.gz
#> 13           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient03/T1W.nii.gz
#> 14         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient03/T1WKS.nii.gz
#> 15           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient03/T2W.nii.gz
#> 16  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient04/consensus_gt.nii.gz
#> 17         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient04/FLAIR.nii.gz
#> 18           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient04/T1W.nii.gz
#> 19         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient04/T1WKS.nii.gz
#> 20           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient04/T2W.nii.gz
#> 21  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient05/consensus_gt.nii.gz
#> 22         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient05/FLAIR.nii.gz
#> 23           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient05/T1W.nii.gz
#> 24         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient05/T1WKS.nii.gz
#> 25           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient05/T2W.nii.gz
#> 26  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient06/consensus_gt.nii.gz
#> 27         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient06/FLAIR.nii.gz
#> 28           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient06/T1W.nii.gz
#> 29         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient06/T1WKS.nii.gz
#> 30           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient06/T2W.nii.gz
#> 31  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient07/consensus_gt.nii.gz
#> 32         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient07/FLAIR.nii.gz
#> 33           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient07/T1W.nii.gz
#> 34         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient07/T1WKS.nii.gz
#> 35           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient07/T2W.nii.gz
#> 36  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient08/consensus_gt.nii.gz
#> 37         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient08/FLAIR.nii.gz
#> 38           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient08/T1W.nii.gz
#> 39         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient08/T1WKS.nii.gz
#> 40           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient08/T2W.nii.gz
#> 41  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient09/consensus_gt.nii.gz
#> 42         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient09/FLAIR.nii.gz
#> 43           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient09/T1W.nii.gz
#> 44         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient09/T1WKS.nii.gz
#> 45           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient09/T2W.nii.gz
#> 46  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient10/consensus_gt.nii.gz
#> 47         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient10/FLAIR.nii.gz
#> 48           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient10/T1W.nii.gz
#> 49         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient10/T1WKS.nii.gz
#> 50           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient10/T2W.nii.gz
#> 51  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient11/consensus_gt.nii.gz
#> 52         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient11/FLAIR.nii.gz
#> 53           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient11/T1W.nii.gz
#> 54         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient11/T1WKS.nii.gz
#> 55           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient11/T2W.nii.gz
#> 56  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient12/consensus_gt.nii.gz
#> 57         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient12/FLAIR.nii.gz
#> 58           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient12/T1W.nii.gz
#> 59         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient12/T1WKS.nii.gz
#> 60           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient12/T2W.nii.gz
#> 61  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient13/consensus_gt.nii.gz
#> 62         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient13/FLAIR.nii.gz
#> 63           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient13/T1W.nii.gz
#> 64         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient13/T1WKS.nii.gz
#> 65           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient13/T2W.nii.gz
#> 66  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient14/consensus_gt.nii.gz
#> 67         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient14/FLAIR.nii.gz
#> 68           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient14/T1W.nii.gz
#> 69         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient14/T1WKS.nii.gz
#> 70           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient14/T2W.nii.gz
#> 71  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient15/consensus_gt.nii.gz
#> 72         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient15/FLAIR.nii.gz
#> 73           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient15/T1W.nii.gz
#> 74         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient15/T1WKS.nii.gz
#> 75           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient15/T2W.nii.gz
#> 76  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient16/consensus_gt.nii.gz
#> 77         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient16/FLAIR.nii.gz
#> 78           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient16/T1W.nii.gz
#> 79         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient16/T1WKS.nii.gz
#> 80           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient16/T2W.nii.gz
#> 81  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient17/consensus_gt.nii.gz
#> 82         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient17/FLAIR.nii.gz
#> 83           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient17/T1W.nii.gz
#> 84         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient17/T1WKS.nii.gz
#> 85           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient17/T2W.nii.gz
#> 86  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient18/consensus_gt.nii.gz
#> 87         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient18/FLAIR.nii.gz
#> 88           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient18/T1W.nii.gz
#> 89         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient18/T1WKS.nii.gz
#> 90           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient18/T2W.nii.gz
#> 91  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient19/consensus_gt.nii.gz
#> 92         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient19/FLAIR.nii.gz
#> 93           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient19/T1W.nii.gz
#> 94         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient19/T1WKS.nii.gz
#> 95           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient19/T2W.nii.gz
#> 96  http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient20/consensus_gt.nii.gz
#> 97         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient20/FLAIR.nii.gz
#> 98           http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient20/T1W.nii.gz
#> 99         http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient20/T1WKS.nii.gz
#> 100          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient20/T2W.nii.gz
#> 101 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient21/consensus_gt.nii.gz
#> 102        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient21/FLAIR.nii.gz
#> 103          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient21/T1W.nii.gz
#> 104        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient21/T1WKS.nii.gz
#> 105          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient21/T2W.nii.gz
#> 106 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient22/consensus_gt.nii.gz
#> 107        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient22/FLAIR.nii.gz
#> 108          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient22/T1W.nii.gz
#> 109        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient22/T1WKS.nii.gz
#> 110          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient22/T2W.nii.gz
#> 111 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient23/consensus_gt.nii.gz
#> 112        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient23/FLAIR.nii.gz
#> 113          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient23/T1W.nii.gz
#> 114        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient23/T1WKS.nii.gz
#> 115          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient23/T2W.nii.gz
#> 116 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient24/consensus_gt.nii.gz
#> 117        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient24/FLAIR.nii.gz
#> 118          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient24/T1W.nii.gz
#> 119        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient24/T1WKS.nii.gz
#> 120          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient24/T2W.nii.gz
#> 121 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient25/consensus_gt.nii.gz
#> 122        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient25/FLAIR.nii.gz
#> 123          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient25/T1W.nii.gz
#> 124        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient25/T1WKS.nii.gz
#> 125          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient25/T2W.nii.gz
#> 126 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient26/consensus_gt.nii.gz
#> 127        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient26/FLAIR.nii.gz
#> 128          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient26/T1W.nii.gz
#> 129        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient26/T1WKS.nii.gz
#> 130          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient26/T2W.nii.gz
#> 131 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient27/consensus_gt.nii.gz
#> 132        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient27/FLAIR.nii.gz
#> 133          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient27/T1W.nii.gz
#> 134        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient27/T1WKS.nii.gz
#> 135          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient27/T2W.nii.gz
#> 136 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient28/consensus_gt.nii.gz
#> 137        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient28/FLAIR.nii.gz
#> 138          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient28/T1W.nii.gz
#> 139        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient28/T1WKS.nii.gz
#> 140          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient28/T2W.nii.gz
#> 141 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient29/consensus_gt.nii.gz
#> 142        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient29/FLAIR.nii.gz
#> 143          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient29/T1W.nii.gz
#> 144        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient29/T1WKS.nii.gz
#> 145          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient29/T2W.nii.gz
#> 146 http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient30/consensus_gt.nii.gz
#> 147        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient30/FLAIR.nii.gz
#> 148          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient30/T1W.nii.gz
#> 149        http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient30/T1WKS.nii.gz
#> 150          http://johnmuschelli.com/open_ms_data/cross_sectional/raw/patient30/T2W.nii.gz
#>     age sex ms_type edss      criteria
#> 1    31   F      RR  1.5 McDonald 2010
#> 2    31   F      RR  1.5 McDonald 2010
#> 3    31   F      RR  1.5 McDonald 2010
#> 4    31   F      RR  1.5 McDonald 2010
#> 5    31   F      RR  1.5 McDonald 2010
#> 6    33   M     CIS  0.0 McDonald 2010
#> 7    33   M     CIS  0.0 McDonald 2010
#> 8    33   M     CIS  0.0 McDonald 2010
#> 9    33   M     CIS  0.0 McDonald 2010
#> 10   33   M     CIS  0.0 McDonald 2010
#> 11   37   F    <NA>   NA          <NA>
#> 12   37   F    <NA>   NA          <NA>
#> 13   37   F    <NA>   NA          <NA>
#> 14   37   F    <NA>   NA          <NA>
#> 15   37   F    <NA>   NA          <NA>
#> 16   25   M      SP  6.5 McDonald 2005
#> 17   25   M      SP  6.5 McDonald 2005
#> 18   25   M      SP  6.5 McDonald 2005
#> 19   25   M      SP  6.5 McDonald 2005
#> 20   25   M      SP  6.5 McDonald 2005
#> 21   33   F      RR  3.5 McDonald 2005
#> 22   33   F      RR  3.5 McDonald 2005
#> 23   33   F      RR  3.5 McDonald 2005
#> 24   33   F      RR  3.5 McDonald 2005
#> 25   33   F      RR  3.5 McDonald 2005
#> 26   37   F      SP  4.0 McDonald 2005
#> 27   37   F      SP  4.0 McDonald 2005
#> 28   37   F      SP  4.0 McDonald 2005
#> 29   37   F      SP  4.0 McDonald 2005
#> 30   37   F      SP  4.0 McDonald 2005
#> 31   53   F      RR  0.5 McDonald 2010
#> 32   53   F      RR  0.5 McDonald 2010
#> 33   53   F      RR  0.5 McDonald 2010
#> 34   53   F      RR  0.5 McDonald 2010
#> 35   53   F      RR  0.5 McDonald 2010
#> 36   41   M      RR  5.0 McDonald 2005
#> 37   41   M      RR  5.0 McDonald 2005
#> 38   41   M      RR  5.0 McDonald 2005
#> 39   41   M      RR  5.0 McDonald 2005
#> 40   41   M      RR  5.0 McDonald 2005
#> 41   40   F      RR  2.0 McDonald 2010
#> 42   40   F      RR  2.0 McDonald 2010
#> 43   40   F      RR  2.0 McDonald 2010
#> 44   40   F      RR  2.0 McDonald 2010
#> 45   40   F      RR  2.0 McDonald 2010
#> 46   64   F      RR  2.0 McDonald 2005
#> 47   64   F      RR  2.0 McDonald 2005
#> 48   64   F      RR  2.0 McDonald 2005
#> 49   64   F      RR  2.0 McDonald 2005
#> 50   64   F      RR  2.0 McDonald 2005
#> 51   29   M      RR  2.0 McDonald 2010
#> 52   29   M      RR  2.0 McDonald 2010
#> 53   29   M      RR  2.0 McDonald 2010
#> 54   29   M      RR  2.0 McDonald 2010
#> 55   29   M      RR  2.0 McDonald 2010
#> 56   39   F      RR   NA McDonald 2005
#> 57   39   F      RR   NA McDonald 2005
#> 58   39   F      RR   NA McDonald 2005
#> 59   39   F      RR   NA McDonald 2005
#> 60   39   F      RR   NA McDonald 2005
#> 61   26   M      RR  2.0 McDonald 2010
#> 62   26   M      RR  2.0 McDonald 2010
#> 63   26   M      RR  2.0 McDonald 2010
#> 64   26   M      RR  2.0 McDonald 2010
#> 65   26   M      RR  2.0 McDonald 2010
#> 66   42   M      RR  4.0 McDonald 2005
#> 67   42   M      RR  4.0 McDonald 2005
#> 68   42   M      RR  4.0 McDonald 2005
#> 69   42   M      RR  4.0 McDonald 2005
#> 70   42   M      RR  4.0 McDonald 2005
#> 71   57   F      PR  6.5 McDonald 2005
#> 72   57   F      PR  6.5 McDonald 2005
#> 73   57   F      PR  6.5 McDonald 2005
#> 74   57   F      PR  6.5 McDonald 2005
#> 75   57   F      PR  6.5 McDonald 2005
#> 76   42   F      RR  4.0 McDonald 2005
#> 77   42   F      RR  4.0 McDonald 2005
#> 78   42   F      RR  4.0 McDonald 2005
#> 79   42   F      RR  4.0 McDonald 2005
#> 80   42   F      RR  4.0 McDonald 2005
#> 81   27   F      RR  0.0 McDonald 2010
#> 82   27   F      RR  0.0 McDonald 2010
#> 83   27   F      RR  0.0 McDonald 2010
#> 84   27   F      RR  0.0 McDonald 2010
#> 85   27   F      RR  0.0 McDonald 2010
#> 86   60   F      RR  2.0 McDonald 2005
#> 87   60   F      RR  2.0 McDonald 2005
#> 88   60   F      RR  2.0 McDonald 2005
#> 89   60   F      RR  2.0 McDonald 2005
#> 90   60   F      RR  2.0 McDonald 2005
#> 91   47   F      RR  1.0 McDonald 2005
#> 92   47   F      RR  1.0 McDonald 2005
#> 93   47   F      RR  1.0 McDonald 2005
#> 94   47   F      RR  1.0 McDonald 2005
#> 95   47   F      RR  1.0 McDonald 2005
#> 96   37   F      RR   NA McDonald 2010
#> 97   37   F      RR   NA McDonald 2010
#> 98   37   F      RR   NA McDonald 2010
#> 99   37   F      RR   NA McDonald 2010
#> 100  37   F      RR   NA McDonald 2010
#> 101  33   F      RR  4.5 McDonald 2005
#> 102  33   F      RR  4.5 McDonald 2005
#> 103  33   F      RR  4.5 McDonald 2005
#> 104  33   F      RR  4.5 McDonald 2005
#> 105  33   F      RR  4.5 McDonald 2005
#> 106  30   F      RR  2.0 McDonald 2005
#> 107  30   F      RR  2.0 McDonald 2005
#> 108  30   F      RR  2.0 McDonald 2005
#> 109  30   F      RR  2.0 McDonald 2005
#> 110  30   F      RR  2.0 McDonald 2005
#> 111  39   F      RR  5.0 McDonald 2005
#> 112  39   F      RR  5.0 McDonald 2005
#> 113  39   F      RR  5.0 McDonald 2005
#> 114  39   F      RR  5.0 McDonald 2005
#> 115  39   F      RR  5.0 McDonald 2005
#> 116  43   M      RR  0.0 McDonald 2005
#> 117  43   M      RR  0.0 McDonald 2005
#> 118  43   M      RR  0.0 McDonald 2005
#> 119  43   M      RR  0.0 McDonald 2005
#> 120  43   M      RR  0.0 McDonald 2005
#> 121  35   F      RR  3.5 McDonald 2005
#> 122  35   F      RR  3.5 McDonald 2005
#> 123  35   F      RR  3.5 McDonald 2005
#> 124  35   F      RR  3.5 McDonald 2005
#> 125  35   F      RR  3.5 McDonald 2005
#> 126  40   F      RR  2.0 McDonald 2005
#> 127  40   F      RR  2.0 McDonald 2005
#> 128  40   F      RR  2.0 McDonald 2005
#> 129  40   F      RR  2.0 McDonald 2005
#> 130  40   F      RR  2.0 McDonald 2005
#> 131  39   F      RR  2.5 McDonald 2005
#> 132  39   F      RR  2.5 McDonald 2005
#> 133  39   F      RR  2.5 McDonald 2005
#> 134  39   F      RR  2.5 McDonald 2005
#> 135  39   F      RR  2.5 McDonald 2005
#> 136  39   F      RR  0.0 McDonald 2005
#> 137  39   F      RR  0.0 McDonald 2005
#> 138  39   F      RR  0.0 McDonald 2005
#> 139  39   F      RR  0.0 McDonald 2005
#> 140  39   F      RR  0.0 McDonald 2005
#> 141  26   F     CIS  3.0 McDonald 2010
#> 142  26   F     CIS  3.0 McDonald 2010
#> 143  26   F     CIS  3.0 McDonald 2010
#> 144  26   F     CIS  3.0 McDonald 2010
#> 145  26   F     CIS  3.0 McDonald 2010
#> 146  54   F      RR  1.5 McDonald 2005
#> 147  54   F      RR  1.5 McDonald 2005
#> 148  54   F      RR  1.5 McDonald 2005
#> 149  54   F      RR  1.5 McDonald 2005
#> 150  54   F      RR  1.5 McDonald 2005
ms_data(data = "coregistered")
#>            id                                                        file
#> 1   patient01    cross_sectional/coregistered//patient01/brainmask.nii.gz
#> 2   patient01 cross_sectional/coregistered//patient01/consensus_gt.nii.gz
#> 3   patient01        cross_sectional/coregistered//patient01/FLAIR.nii.gz
#> 4   patient01          cross_sectional/coregistered//patient01/T1W.nii.gz
#> 5   patient01        cross_sectional/coregistered//patient01/T1WKS.nii.gz
#> 6   patient01          cross_sectional/coregistered//patient01/T2W.nii.gz
#> 7   patient02    cross_sectional/coregistered//patient02/brainmask.nii.gz
#> 8   patient02 cross_sectional/coregistered//patient02/consensus_gt.nii.gz
#> 9   patient02        cross_sectional/coregistered//patient02/FLAIR.nii.gz
#> 10  patient02          cross_sectional/coregistered//patient02/T1W.nii.gz
#> 11  patient02        cross_sectional/coregistered//patient02/T1WKS.nii.gz
#> 12  patient02          cross_sectional/coregistered//patient02/T2W.nii.gz
#> 13  patient03    cross_sectional/coregistered//patient03/brainmask.nii.gz
#> 14  patient03 cross_sectional/coregistered//patient03/consensus_gt.nii.gz
#> 15  patient03        cross_sectional/coregistered//patient03/FLAIR.nii.gz
#> 16  patient03          cross_sectional/coregistered//patient03/T1W.nii.gz
#> 17  patient03        cross_sectional/coregistered//patient03/T1WKS.nii.gz
#> 18  patient03          cross_sectional/coregistered//patient03/T2W.nii.gz
#> 19  patient04    cross_sectional/coregistered//patient04/brainmask.nii.gz
#> 20  patient04 cross_sectional/coregistered//patient04/consensus_gt.nii.gz
#> 21  patient04        cross_sectional/coregistered//patient04/FLAIR.nii.gz
#> 22  patient04          cross_sectional/coregistered//patient04/T1W.nii.gz
#> 23  patient04        cross_sectional/coregistered//patient04/T1WKS.nii.gz
#> 24  patient04          cross_sectional/coregistered//patient04/T2W.nii.gz
#> 25  patient05    cross_sectional/coregistered//patient05/brainmask.nii.gz
#> 26  patient05 cross_sectional/coregistered//patient05/consensus_gt.nii.gz
#> 27  patient05        cross_sectional/coregistered//patient05/FLAIR.nii.gz
#> 28  patient05          cross_sectional/coregistered//patient05/T1W.nii.gz
#> 29  patient05        cross_sectional/coregistered//patient05/T1WKS.nii.gz
#> 30  patient05          cross_sectional/coregistered//patient05/T2W.nii.gz
#> 31  patient06    cross_sectional/coregistered//patient06/brainmask.nii.gz
#> 32  patient06 cross_sectional/coregistered//patient06/consensus_gt.nii.gz
#> 33  patient06        cross_sectional/coregistered//patient06/FLAIR.nii.gz
#> 34  patient06          cross_sectional/coregistered//patient06/T1W.nii.gz
#> 35  patient06        cross_sectional/coregistered//patient06/T1WKS.nii.gz
#> 36  patient06          cross_sectional/coregistered//patient06/T2W.nii.gz
#> 37  patient07    cross_sectional/coregistered//patient07/brainmask.nii.gz
#> 38  patient07 cross_sectional/coregistered//patient07/consensus_gt.nii.gz
#> 39  patient07        cross_sectional/coregistered//patient07/FLAIR.nii.gz
#> 40  patient07          cross_sectional/coregistered//patient07/T1W.nii.gz
#> 41  patient07        cross_sectional/coregistered//patient07/T1WKS.nii.gz
#> 42  patient07          cross_sectional/coregistered//patient07/T2W.nii.gz
#> 43  patient08    cross_sectional/coregistered//patient08/brainmask.nii.gz
#> 44  patient08 cross_sectional/coregistered//patient08/consensus_gt.nii.gz
#> 45  patient08        cross_sectional/coregistered//patient08/FLAIR.nii.gz
#> 46  patient08          cross_sectional/coregistered//patient08/T1W.nii.gz
#> 47  patient08        cross_sectional/coregistered//patient08/T1WKS.nii.gz
#> 48  patient08          cross_sectional/coregistered//patient08/T2W.nii.gz
#> 49  patient09    cross_sectional/coregistered//patient09/brainmask.nii.gz
#> 50  patient09 cross_sectional/coregistered//patient09/consensus_gt.nii.gz
#> 51  patient09        cross_sectional/coregistered//patient09/FLAIR.nii.gz
#> 52  patient09          cross_sectional/coregistered//patient09/T1W.nii.gz
#> 53  patient09        cross_sectional/coregistered//patient09/T1WKS.nii.gz
#> 54  patient09          cross_sectional/coregistered//patient09/T2W.nii.gz
#> 55  patient10    cross_sectional/coregistered//patient10/brainmask.nii.gz
#> 56  patient10 cross_sectional/coregistered//patient10/consensus_gt.nii.gz
#> 57  patient10        cross_sectional/coregistered//patient10/FLAIR.nii.gz
#> 58  patient10          cross_sectional/coregistered//patient10/T1W.nii.gz
#> 59  patient10        cross_sectional/coregistered//patient10/T1WKS.nii.gz
#> 60  patient10          cross_sectional/coregistered//patient10/T2W.nii.gz
#> 61  patient11    cross_sectional/coregistered//patient11/brainmask.nii.gz
#> 62  patient11 cross_sectional/coregistered//patient11/consensus_gt.nii.gz
#> 63  patient11        cross_sectional/coregistered//patient11/FLAIR.nii.gz
#> 64  patient11          cross_sectional/coregistered//patient11/T1W.nii.gz
#> 65  patient11        cross_sectional/coregistered//patient11/T1WKS.nii.gz
#> 66  patient11          cross_sectional/coregistered//patient11/T2W.nii.gz
#> 67  patient12    cross_sectional/coregistered//patient12/brainmask.nii.gz
#> 68  patient12 cross_sectional/coregistered//patient12/consensus_gt.nii.gz
#> 69  patient12        cross_sectional/coregistered//patient12/FLAIR.nii.gz
#> 70  patient12          cross_sectional/coregistered//patient12/T1W.nii.gz
#> 71  patient12        cross_sectional/coregistered//patient12/T1WKS.nii.gz
#> 72  patient12          cross_sectional/coregistered//patient12/T2W.nii.gz
#> 73  patient13    cross_sectional/coregistered//patient13/brainmask.nii.gz
#> 74  patient13 cross_sectional/coregistered//patient13/consensus_gt.nii.gz
#> 75  patient13        cross_sectional/coregistered//patient13/FLAIR.nii.gz
#> 76  patient13          cross_sectional/coregistered//patient13/T1W.nii.gz
#> 77  patient13        cross_sectional/coregistered//patient13/T1WKS.nii.gz
#> 78  patient13          cross_sectional/coregistered//patient13/T2W.nii.gz
#> 79  patient14    cross_sectional/coregistered//patient14/brainmask.nii.gz
#> 80  patient14 cross_sectional/coregistered//patient14/consensus_gt.nii.gz
#> 81  patient14        cross_sectional/coregistered//patient14/FLAIR.nii.gz
#> 82  patient14          cross_sectional/coregistered//patient14/T1W.nii.gz
#> 83  patient14        cross_sectional/coregistered//patient14/T1WKS.nii.gz
#> 84  patient14          cross_sectional/coregistered//patient14/T2W.nii.gz
#> 85  patient15    cross_sectional/coregistered//patient15/brainmask.nii.gz
#> 86  patient15 cross_sectional/coregistered//patient15/consensus_gt.nii.gz
#> 87  patient15        cross_sectional/coregistered//patient15/FLAIR.nii.gz
#> 88  patient15          cross_sectional/coregistered//patient15/T1W.nii.gz
#> 89  patient15        cross_sectional/coregistered//patient15/T1WKS.nii.gz
#> 90  patient15          cross_sectional/coregistered//patient15/T2W.nii.gz
#> 91  patient16    cross_sectional/coregistered//patient16/brainmask.nii.gz
#> 92  patient16 cross_sectional/coregistered//patient16/consensus_gt.nii.gz
#> 93  patient16        cross_sectional/coregistered//patient16/FLAIR.nii.gz
#> 94  patient16          cross_sectional/coregistered//patient16/T1W.nii.gz
#> 95  patient16        cross_sectional/coregistered//patient16/T1WKS.nii.gz
#> 96  patient16          cross_sectional/coregistered//patient16/T2W.nii.gz
#> 97  patient17    cross_sectional/coregistered//patient17/brainmask.nii.gz
#> 98  patient17 cross_sectional/coregistered//patient17/consensus_gt.nii.gz
#> 99  patient17        cross_sectional/coregistered//patient17/FLAIR.nii.gz
#> 100 patient17          cross_sectional/coregistered//patient17/T1W.nii.gz
#> 101 patient17        cross_sectional/coregistered//patient17/T1WKS.nii.gz
#> 102 patient17          cross_sectional/coregistered//patient17/T2W.nii.gz
#> 103 patient18    cross_sectional/coregistered//patient18/brainmask.nii.gz
#> 104 patient18 cross_sectional/coregistered//patient18/consensus_gt.nii.gz
#> 105 patient18        cross_sectional/coregistered//patient18/FLAIR.nii.gz
#> 106 patient18          cross_sectional/coregistered//patient18/T1W.nii.gz
#> 107 patient18        cross_sectional/coregistered//patient18/T1WKS.nii.gz
#> 108 patient18          cross_sectional/coregistered//patient18/T2W.nii.gz
#> 109 patient19    cross_sectional/coregistered//patient19/brainmask.nii.gz
#> 110 patient19 cross_sectional/coregistered//patient19/consensus_gt.nii.gz
#> 111 patient19        cross_sectional/coregistered//patient19/FLAIR.nii.gz
#> 112 patient19          cross_sectional/coregistered//patient19/T1W.nii.gz
#> 113 patient19        cross_sectional/coregistered//patient19/T1WKS.nii.gz
#> 114 patient19          cross_sectional/coregistered//patient19/T2W.nii.gz
#> 115 patient20    cross_sectional/coregistered//patient20/brainmask.nii.gz
#> 116 patient20 cross_sectional/coregistered//patient20/consensus_gt.nii.gz
#> 117 patient20        cross_sectional/coregistered//patient20/FLAIR.nii.gz
#> 118 patient20          cross_sectional/coregistered//patient20/T1W.nii.gz
#> 119 patient20        cross_sectional/coregistered//patient20/T1WKS.nii.gz
#> 120 patient20          cross_sectional/coregistered//patient20/T2W.nii.gz
#> 121 patient21    cross_sectional/coregistered//patient21/brainmask.nii.gz
#> 122 patient21 cross_sectional/coregistered//patient21/consensus_gt.nii.gz
#> 123 patient21        cross_sectional/coregistered//patient21/FLAIR.nii.gz
#> 124 patient21          cross_sectional/coregistered//patient21/T1W.nii.gz
#> 125 patient21        cross_sectional/coregistered//patient21/T1WKS.nii.gz
#> 126 patient21          cross_sectional/coregistered//patient21/T2W.nii.gz
#> 127 patient22    cross_sectional/coregistered//patient22/brainmask.nii.gz
#> 128 patient22 cross_sectional/coregistered//patient22/consensus_gt.nii.gz
#> 129 patient22        cross_sectional/coregistered//patient22/FLAIR.nii.gz
#> 130 patient22          cross_sectional/coregistered//patient22/T1W.nii.gz
#> 131 patient22        cross_sectional/coregistered//patient22/T1WKS.nii.gz
#> 132 patient22          cross_sectional/coregistered//patient22/T2W.nii.gz
#> 133 patient23    cross_sectional/coregistered//patient23/brainmask.nii.gz
#> 134 patient23 cross_sectional/coregistered//patient23/consensus_gt.nii.gz
#> 135 patient23        cross_sectional/coregistered//patient23/FLAIR.nii.gz
#> 136 patient23          cross_sectional/coregistered//patient23/T1W.nii.gz
#> 137 patient23        cross_sectional/coregistered//patient23/T1WKS.nii.gz
#> 138 patient23          cross_sectional/coregistered//patient23/T2W.nii.gz
#> 139 patient24    cross_sectional/coregistered//patient24/brainmask.nii.gz
#> 140 patient24 cross_sectional/coregistered//patient24/consensus_gt.nii.gz
#> 141 patient24        cross_sectional/coregistered//patient24/FLAIR.nii.gz
#> 142 patient24          cross_sectional/coregistered//patient24/T1W.nii.gz
#> 143 patient24        cross_sectional/coregistered//patient24/T1WKS.nii.gz
#> 144 patient24          cross_sectional/coregistered//patient24/T2W.nii.gz
#> 145 patient25    cross_sectional/coregistered//patient25/brainmask.nii.gz
#> 146 patient25 cross_sectional/coregistered//patient25/consensus_gt.nii.gz
#> 147 patient25        cross_sectional/coregistered//patient25/FLAIR.nii.gz
#> 148 patient25          cross_sectional/coregistered//patient25/T1W.nii.gz
#> 149 patient25        cross_sectional/coregistered//patient25/T1WKS.nii.gz
#> 150 patient25          cross_sectional/coregistered//patient25/T2W.nii.gz
#> 151 patient26    cross_sectional/coregistered//patient26/brainmask.nii.gz
#> 152 patient26 cross_sectional/coregistered//patient26/consensus_gt.nii.gz
#> 153 patient26        cross_sectional/coregistered//patient26/FLAIR.nii.gz
#> 154 patient26          cross_sectional/coregistered//patient26/T1W.nii.gz
#> 155 patient26        cross_sectional/coregistered//patient26/T1WKS.nii.gz
#> 156 patient26          cross_sectional/coregistered//patient26/T2W.nii.gz
#> 157 patient27    cross_sectional/coregistered//patient27/brainmask.nii.gz
#> 158 patient27 cross_sectional/coregistered//patient27/consensus_gt.nii.gz
#> 159 patient27        cross_sectional/coregistered//patient27/FLAIR.nii.gz
#> 160 patient27          cross_sectional/coregistered//patient27/T1W.nii.gz
#> 161 patient27        cross_sectional/coregistered//patient27/T1WKS.nii.gz
#> 162 patient27          cross_sectional/coregistered//patient27/T2W.nii.gz
#> 163 patient28    cross_sectional/coregistered//patient28/brainmask.nii.gz
#> 164 patient28 cross_sectional/coregistered//patient28/consensus_gt.nii.gz
#> 165 patient28        cross_sectional/coregistered//patient28/FLAIR.nii.gz
#> 166 patient28          cross_sectional/coregistered//patient28/T1W.nii.gz
#> 167 patient28        cross_sectional/coregistered//patient28/T1WKS.nii.gz
#> 168 patient28          cross_sectional/coregistered//patient28/T2W.nii.gz
#> 169 patient29    cross_sectional/coregistered//patient29/brainmask.nii.gz
#> 170 patient29 cross_sectional/coregistered//patient29/consensus_gt.nii.gz
#> 171 patient29        cross_sectional/coregistered//patient29/FLAIR.nii.gz
#> 172 patient29          cross_sectional/coregistered//patient29/T1W.nii.gz
#> 173 patient29        cross_sectional/coregistered//patient29/T1WKS.nii.gz
#> 174 patient29          cross_sectional/coregistered//patient29/T2W.nii.gz
#> 175 patient30    cross_sectional/coregistered//patient30/brainmask.nii.gz
#> 176 patient30 cross_sectional/coregistered//patient30/consensus_gt.nii.gz
#> 177 patient30        cross_sectional/coregistered//patient30/FLAIR.nii.gz
#> 178 patient30          cross_sectional/coregistered//patient30/T1W.nii.gz
#> 179 patient30        cross_sectional/coregistered//patient30/T1WKS.nii.gz
#> 180 patient30          cross_sectional/coregistered//patient30/T2W.nii.gz
#>               mod
#> 1      Brain_Mask
#> 2   Gold_Standard
#> 3           FLAIR
#> 4              T1
#> 5          T1Post
#> 6              T2
#> 7      Brain_Mask
#> 8   Gold_Standard
#> 9           FLAIR
#> 10             T1
#> 11         T1Post
#> 12             T2
#> 13     Brain_Mask
#> 14  Gold_Standard
#> 15          FLAIR
#> 16             T1
#> 17         T1Post
#> 18             T2
#> 19     Brain_Mask
#> 20  Gold_Standard
#> 21          FLAIR
#> 22             T1
#> 23         T1Post
#> 24             T2
#> 25     Brain_Mask
#> 26  Gold_Standard
#> 27          FLAIR
#> 28             T1
#> 29         T1Post
#> 30             T2
#> 31     Brain_Mask
#> 32  Gold_Standard
#> 33          FLAIR
#> 34             T1
#> 35         T1Post
#> 36             T2
#> 37     Brain_Mask
#> 38  Gold_Standard
#> 39          FLAIR
#> 40             T1
#> 41         T1Post
#> 42             T2
#> 43     Brain_Mask
#> 44  Gold_Standard
#> 45          FLAIR
#> 46             T1
#> 47         T1Post
#> 48             T2
#> 49     Brain_Mask
#> 50  Gold_Standard
#> 51          FLAIR
#> 52             T1
#> 53         T1Post
#> 54             T2
#> 55     Brain_Mask
#> 56  Gold_Standard
#> 57          FLAIR
#> 58             T1
#> 59         T1Post
#> 60             T2
#> 61     Brain_Mask
#> 62  Gold_Standard
#> 63          FLAIR
#> 64             T1
#> 65         T1Post
#> 66             T2
#> 67     Brain_Mask
#> 68  Gold_Standard
#> 69          FLAIR
#> 70             T1
#> 71         T1Post
#> 72             T2
#> 73     Brain_Mask
#> 74  Gold_Standard
#> 75          FLAIR
#> 76             T1
#> 77         T1Post
#> 78             T2
#> 79     Brain_Mask
#> 80  Gold_Standard
#> 81          FLAIR
#> 82             T1
#> 83         T1Post
#> 84             T2
#> 85     Brain_Mask
#> 86  Gold_Standard
#> 87          FLAIR
#> 88             T1
#> 89         T1Post
#> 90             T2
#> 91     Brain_Mask
#> 92  Gold_Standard
#> 93          FLAIR
#> 94             T1
#> 95         T1Post
#> 96             T2
#> 97     Brain_Mask
#> 98  Gold_Standard
#> 99          FLAIR
#> 100            T1
#> 101        T1Post
#> 102            T2
#> 103    Brain_Mask
#> 104 Gold_Standard
#> 105         FLAIR
#> 106            T1
#> 107        T1Post
#> 108            T2
#> 109    Brain_Mask
#> 110 Gold_Standard
#> 111         FLAIR
#> 112            T1
#> 113        T1Post
#> 114            T2
#> 115    Brain_Mask
#> 116 Gold_Standard
#> 117         FLAIR
#> 118            T1
#> 119        T1Post
#> 120            T2
#> 121    Brain_Mask
#> 122 Gold_Standard
#> 123         FLAIR
#> 124            T1
#> 125        T1Post
#> 126            T2
#> 127    Brain_Mask
#> 128 Gold_Standard
#> 129         FLAIR
#> 130            T1
#> 131        T1Post
#> 132            T2
#> 133    Brain_Mask
#> 134 Gold_Standard
#> 135         FLAIR
#> 136            T1
#> 137        T1Post
#> 138            T2
#> 139    Brain_Mask
#> 140 Gold_Standard
#> 141         FLAIR
#> 142            T1
#> 143        T1Post
#> 144            T2
#> 145    Brain_Mask
#> 146 Gold_Standard
#> 147         FLAIR
#> 148            T1
#> 149        T1Post
#> 150            T2
#> 151    Brain_Mask
#> 152 Gold_Standard
#> 153         FLAIR
#> 154            T1
#> 155        T1Post
#> 156            T2
#> 157    Brain_Mask
#> 158 Gold_Standard
#> 159         FLAIR
#> 160            T1
#> 161        T1Post
#> 162            T2
#> 163    Brain_Mask
#> 164 Gold_Standard
#> 165         FLAIR
#> 166            T1
#> 167        T1Post
#> 168            T2
#> 169    Brain_Mask
#> 170 Gold_Standard
#> 171         FLAIR
#> 172            T1
#> 173        T1Post
#> 174            T2
#> 175    Brain_Mask
#> 176 Gold_Standard
#> 177         FLAIR
#> 178            T1
#> 179        T1Post
#> 180            T2
#>                                                                                                   url
#> 1      http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient01/brainmask.nii.gz
#> 2   http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient01/consensus_gt.nii.gz
#> 3          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient01/FLAIR.nii.gz
#> 4            http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient01/T1W.nii.gz
#> 5          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient01/T1WKS.nii.gz
#> 6            http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient01/T2W.nii.gz
#> 7      http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient02/brainmask.nii.gz
#> 8   http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient02/consensus_gt.nii.gz
#> 9          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient02/FLAIR.nii.gz
#> 10           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient02/T1W.nii.gz
#> 11         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient02/T1WKS.nii.gz
#> 12           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient02/T2W.nii.gz
#> 13     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient03/brainmask.nii.gz
#> 14  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient03/consensus_gt.nii.gz
#> 15         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient03/FLAIR.nii.gz
#> 16           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient03/T1W.nii.gz
#> 17         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient03/T1WKS.nii.gz
#> 18           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient03/T2W.nii.gz
#> 19     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient04/brainmask.nii.gz
#> 20  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient04/consensus_gt.nii.gz
#> 21         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient04/FLAIR.nii.gz
#> 22           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient04/T1W.nii.gz
#> 23         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient04/T1WKS.nii.gz
#> 24           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient04/T2W.nii.gz
#> 25     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient05/brainmask.nii.gz
#> 26  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient05/consensus_gt.nii.gz
#> 27         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient05/FLAIR.nii.gz
#> 28           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient05/T1W.nii.gz
#> 29         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient05/T1WKS.nii.gz
#> 30           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient05/T2W.nii.gz
#> 31     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient06/brainmask.nii.gz
#> 32  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient06/consensus_gt.nii.gz
#> 33         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient06/FLAIR.nii.gz
#> 34           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient06/T1W.nii.gz
#> 35         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient06/T1WKS.nii.gz
#> 36           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient06/T2W.nii.gz
#> 37     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient07/brainmask.nii.gz
#> 38  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient07/consensus_gt.nii.gz
#> 39         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient07/FLAIR.nii.gz
#> 40           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient07/T1W.nii.gz
#> 41         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient07/T1WKS.nii.gz
#> 42           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient07/T2W.nii.gz
#> 43     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient08/brainmask.nii.gz
#> 44  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient08/consensus_gt.nii.gz
#> 45         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient08/FLAIR.nii.gz
#> 46           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient08/T1W.nii.gz
#> 47         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient08/T1WKS.nii.gz
#> 48           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient08/T2W.nii.gz
#> 49     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient09/brainmask.nii.gz
#> 50  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient09/consensus_gt.nii.gz
#> 51         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient09/FLAIR.nii.gz
#> 52           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient09/T1W.nii.gz
#> 53         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient09/T1WKS.nii.gz
#> 54           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient09/T2W.nii.gz
#> 55     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient10/brainmask.nii.gz
#> 56  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient10/consensus_gt.nii.gz
#> 57         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient10/FLAIR.nii.gz
#> 58           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient10/T1W.nii.gz
#> 59         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient10/T1WKS.nii.gz
#> 60           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient10/T2W.nii.gz
#> 61     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient11/brainmask.nii.gz
#> 62  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient11/consensus_gt.nii.gz
#> 63         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient11/FLAIR.nii.gz
#> 64           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient11/T1W.nii.gz
#> 65         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient11/T1WKS.nii.gz
#> 66           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient11/T2W.nii.gz
#> 67     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient12/brainmask.nii.gz
#> 68  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient12/consensus_gt.nii.gz
#> 69         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient12/FLAIR.nii.gz
#> 70           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient12/T1W.nii.gz
#> 71         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient12/T1WKS.nii.gz
#> 72           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient12/T2W.nii.gz
#> 73     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient13/brainmask.nii.gz
#> 74  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient13/consensus_gt.nii.gz
#> 75         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient13/FLAIR.nii.gz
#> 76           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient13/T1W.nii.gz
#> 77         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient13/T1WKS.nii.gz
#> 78           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient13/T2W.nii.gz
#> 79     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient14/brainmask.nii.gz
#> 80  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient14/consensus_gt.nii.gz
#> 81         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient14/FLAIR.nii.gz
#> 82           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient14/T1W.nii.gz
#> 83         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient14/T1WKS.nii.gz
#> 84           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient14/T2W.nii.gz
#> 85     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient15/brainmask.nii.gz
#> 86  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient15/consensus_gt.nii.gz
#> 87         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient15/FLAIR.nii.gz
#> 88           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient15/T1W.nii.gz
#> 89         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient15/T1WKS.nii.gz
#> 90           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient15/T2W.nii.gz
#> 91     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient16/brainmask.nii.gz
#> 92  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient16/consensus_gt.nii.gz
#> 93         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient16/FLAIR.nii.gz
#> 94           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient16/T1W.nii.gz
#> 95         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient16/T1WKS.nii.gz
#> 96           http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient16/T2W.nii.gz
#> 97     http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient17/brainmask.nii.gz
#> 98  http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient17/consensus_gt.nii.gz
#> 99         http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient17/FLAIR.nii.gz
#> 100          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient17/T1W.nii.gz
#> 101        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient17/T1WKS.nii.gz
#> 102          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient17/T2W.nii.gz
#> 103    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient18/brainmask.nii.gz
#> 104 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient18/consensus_gt.nii.gz
#> 105        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient18/FLAIR.nii.gz
#> 106          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient18/T1W.nii.gz
#> 107        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient18/T1WKS.nii.gz
#> 108          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient18/T2W.nii.gz
#> 109    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient19/brainmask.nii.gz
#> 110 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient19/consensus_gt.nii.gz
#> 111        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient19/FLAIR.nii.gz
#> 112          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient19/T1W.nii.gz
#> 113        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient19/T1WKS.nii.gz
#> 114          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient19/T2W.nii.gz
#> 115    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient20/brainmask.nii.gz
#> 116 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient20/consensus_gt.nii.gz
#> 117        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient20/FLAIR.nii.gz
#> 118          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient20/T1W.nii.gz
#> 119        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient20/T1WKS.nii.gz
#> 120          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient20/T2W.nii.gz
#> 121    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient21/brainmask.nii.gz
#> 122 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient21/consensus_gt.nii.gz
#> 123        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient21/FLAIR.nii.gz
#> 124          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient21/T1W.nii.gz
#> 125        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient21/T1WKS.nii.gz
#> 126          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient21/T2W.nii.gz
#> 127    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient22/brainmask.nii.gz
#> 128 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient22/consensus_gt.nii.gz
#> 129        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient22/FLAIR.nii.gz
#> 130          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient22/T1W.nii.gz
#> 131        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient22/T1WKS.nii.gz
#> 132          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient22/T2W.nii.gz
#> 133    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient23/brainmask.nii.gz
#> 134 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient23/consensus_gt.nii.gz
#> 135        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient23/FLAIR.nii.gz
#> 136          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient23/T1W.nii.gz
#> 137        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient23/T1WKS.nii.gz
#> 138          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient23/T2W.nii.gz
#> 139    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient24/brainmask.nii.gz
#> 140 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient24/consensus_gt.nii.gz
#> 141        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient24/FLAIR.nii.gz
#> 142          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient24/T1W.nii.gz
#> 143        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient24/T1WKS.nii.gz
#> 144          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient24/T2W.nii.gz
#> 145    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient25/brainmask.nii.gz
#> 146 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient25/consensus_gt.nii.gz
#> 147        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient25/FLAIR.nii.gz
#> 148          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient25/T1W.nii.gz
#> 149        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient25/T1WKS.nii.gz
#> 150          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient25/T2W.nii.gz
#> 151    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient26/brainmask.nii.gz
#> 152 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient26/consensus_gt.nii.gz
#> 153        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient26/FLAIR.nii.gz
#> 154          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient26/T1W.nii.gz
#> 155        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient26/T1WKS.nii.gz
#> 156          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient26/T2W.nii.gz
#> 157    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient27/brainmask.nii.gz
#> 158 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient27/consensus_gt.nii.gz
#> 159        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient27/FLAIR.nii.gz
#> 160          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient27/T1W.nii.gz
#> 161        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient27/T1WKS.nii.gz
#> 162          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient27/T2W.nii.gz
#> 163    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient28/brainmask.nii.gz
#> 164 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient28/consensus_gt.nii.gz
#> 165        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient28/FLAIR.nii.gz
#> 166          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient28/T1W.nii.gz
#> 167        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient28/T1WKS.nii.gz
#> 168          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient28/T2W.nii.gz
#> 169    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient29/brainmask.nii.gz
#> 170 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient29/consensus_gt.nii.gz
#> 171        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient29/FLAIR.nii.gz
#> 172          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient29/T1W.nii.gz
#> 173        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient29/T1WKS.nii.gz
#> 174          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient29/T2W.nii.gz
#> 175    http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient30/brainmask.nii.gz
#> 176 http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient30/consensus_gt.nii.gz
#> 177        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient30/FLAIR.nii.gz
#> 178          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient30/T1W.nii.gz
#> 179        http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient30/T1WKS.nii.gz
#> 180          http://johnmuschelli.com/open_ms_data/cross_sectional/coregistered//patient30/T2W.nii.gz
#>     age sex ms_type edss      criteria
#> 1    31   F      RR  1.5 McDonald 2010
#> 2    31   F      RR  1.5 McDonald 2010
#> 3    31   F      RR  1.5 McDonald 2010
#> 4    31   F      RR  1.5 McDonald 2010
#> 5    31   F      RR  1.5 McDonald 2010
#> 6    31   F      RR  1.5 McDonald 2010
#> 7    33   M     CIS  0.0 McDonald 2010
#> 8    33   M     CIS  0.0 McDonald 2010
#> 9    33   M     CIS  0.0 McDonald 2010
#> 10   33   M     CIS  0.0 McDonald 2010
#> 11   33   M     CIS  0.0 McDonald 2010
#> 12   33   M     CIS  0.0 McDonald 2010
#> 13   37   F    <NA>   NA          <NA>
#> 14   37   F    <NA>   NA          <NA>
#> 15   37   F    <NA>   NA          <NA>
#> 16   37   F    <NA>   NA          <NA>
#> 17   37   F    <NA>   NA          <NA>
#> 18   37   F    <NA>   NA          <NA>
#> 19   25   M      SP  6.5 McDonald 2005
#> 20   25   M      SP  6.5 McDonald 2005
#> 21   25   M      SP  6.5 McDonald 2005
#> 22   25   M      SP  6.5 McDonald 2005
#> 23   25   M      SP  6.5 McDonald 2005
#> 24   25   M      SP  6.5 McDonald 2005
#> 25   33   F      RR  3.5 McDonald 2005
#> 26   33   F      RR  3.5 McDonald 2005
#> 27   33   F      RR  3.5 McDonald 2005
#> 28   33   F      RR  3.5 McDonald 2005
#> 29   33   F      RR  3.5 McDonald 2005
#> 30   33   F      RR  3.5 McDonald 2005
#> 31   37   F      SP  4.0 McDonald 2005
#> 32   37   F      SP  4.0 McDonald 2005
#> 33   37   F      SP  4.0 McDonald 2005
#> 34   37   F      SP  4.0 McDonald 2005
#> 35   37   F      SP  4.0 McDonald 2005
#> 36   37   F      SP  4.0 McDonald 2005
#> 37   53   F      RR  0.5 McDonald 2010
#> 38   53   F      RR  0.5 McDonald 2010
#> 39   53   F      RR  0.5 McDonald 2010
#> 40   53   F      RR  0.5 McDonald 2010
#> 41   53   F      RR  0.5 McDonald 2010
#> 42   53   F      RR  0.5 McDonald 2010
#> 43   41   M      RR  5.0 McDonald 2005
#> 44   41   M      RR  5.0 McDonald 2005
#> 45   41   M      RR  5.0 McDonald 2005
#> 46   41   M      RR  5.0 McDonald 2005
#> 47   41   M      RR  5.0 McDonald 2005
#> 48   41   M      RR  5.0 McDonald 2005
#> 49   40   F      RR  2.0 McDonald 2010
#> 50   40   F      RR  2.0 McDonald 2010
#> 51   40   F      RR  2.0 McDonald 2010
#> 52   40   F      RR  2.0 McDonald 2010
#> 53   40   F      RR  2.0 McDonald 2010
#> 54   40   F      RR  2.0 McDonald 2010
#> 55   64   F      RR  2.0 McDonald 2005
#> 56   64   F      RR  2.0 McDonald 2005
#> 57   64   F      RR  2.0 McDonald 2005
#> 58   64   F      RR  2.0 McDonald 2005
#> 59   64   F      RR  2.0 McDonald 2005
#> 60   64   F      RR  2.0 McDonald 2005
#> 61   29   M      RR  2.0 McDonald 2010
#> 62   29   M      RR  2.0 McDonald 2010
#> 63   29   M      RR  2.0 McDonald 2010
#> 64   29   M      RR  2.0 McDonald 2010
#> 65   29   M      RR  2.0 McDonald 2010
#> 66   29   M      RR  2.0 McDonald 2010
#> 67   39   F      RR   NA McDonald 2005
#> 68   39   F      RR   NA McDonald 2005
#> 69   39   F      RR   NA McDonald 2005
#> 70   39   F      RR   NA McDonald 2005
#> 71   39   F      RR   NA McDonald 2005
#> 72   39   F      RR   NA McDonald 2005
#> 73   26   M      RR  2.0 McDonald 2010
#> 74   26   M      RR  2.0 McDonald 2010
#> 75   26   M      RR  2.0 McDonald 2010
#> 76   26   M      RR  2.0 McDonald 2010
#> 77   26   M      RR  2.0 McDonald 2010
#> 78   26   M      RR  2.0 McDonald 2010
#> 79   42   M      RR  4.0 McDonald 2005
#> 80   42   M      RR  4.0 McDonald 2005
#> 81   42   M      RR  4.0 McDonald 2005
#> 82   42   M      RR  4.0 McDonald 2005
#> 83   42   M      RR  4.0 McDonald 2005
#> 84   42   M      RR  4.0 McDonald 2005
#> 85   57   F      PR  6.5 McDonald 2005
#> 86   57   F      PR  6.5 McDonald 2005
#> 87   57   F      PR  6.5 McDonald 2005
#> 88   57   F      PR  6.5 McDonald 2005
#> 89   57   F      PR  6.5 McDonald 2005
#> 90   57   F      PR  6.5 McDonald 2005
#> 91   42   F      RR  4.0 McDonald 2005
#> 92   42   F      RR  4.0 McDonald 2005
#> 93   42   F      RR  4.0 McDonald 2005
#> 94   42   F      RR  4.0 McDonald 2005
#> 95   42   F      RR  4.0 McDonald 2005
#> 96   42   F      RR  4.0 McDonald 2005
#> 97   27   F      RR  0.0 McDonald 2010
#> 98   27   F      RR  0.0 McDonald 2010
#> 99   27   F      RR  0.0 McDonald 2010
#> 100  27   F      RR  0.0 McDonald 2010
#> 101  27   F      RR  0.0 McDonald 2010
#> 102  27   F      RR  0.0 McDonald 2010
#> 103  60   F      RR  2.0 McDonald 2005
#> 104  60   F      RR  2.0 McDonald 2005
#> 105  60   F      RR  2.0 McDonald 2005
#> 106  60   F      RR  2.0 McDonald 2005
#> 107  60   F      RR  2.0 McDonald 2005
#> 108  60   F      RR  2.0 McDonald 2005
#> 109  47   F      RR  1.0 McDonald 2005
#> 110  47   F      RR  1.0 McDonald 2005
#> 111  47   F      RR  1.0 McDonald 2005
#> 112  47   F      RR  1.0 McDonald 2005
#> 113  47   F      RR  1.0 McDonald 2005
#> 114  47   F      RR  1.0 McDonald 2005
#> 115  37   F      RR   NA McDonald 2010
#> 116  37   F      RR   NA McDonald 2010
#> 117  37   F      RR   NA McDonald 2010
#> 118  37   F      RR   NA McDonald 2010
#> 119  37   F      RR   NA McDonald 2010
#> 120  37   F      RR   NA McDonald 2010
#> 121  33   F      RR  4.5 McDonald 2005
#> 122  33   F      RR  4.5 McDonald 2005
#> 123  33   F      RR  4.5 McDonald 2005
#> 124  33   F      RR  4.5 McDonald 2005
#> 125  33   F      RR  4.5 McDonald 2005
#> 126  33   F      RR  4.5 McDonald 2005
#> 127  30   F      RR  2.0 McDonald 2005
#> 128  30   F      RR  2.0 McDonald 2005
#> 129  30   F      RR  2.0 McDonald 2005
#> 130  30   F      RR  2.0 McDonald 2005
#> 131  30   F      RR  2.0 McDonald 2005
#> 132  30   F      RR  2.0 McDonald 2005
#> 133  39   F      RR  5.0 McDonald 2005
#> 134  39   F      RR  5.0 McDonald 2005
#> 135  39   F      RR  5.0 McDonald 2005
#> 136  39   F      RR  5.0 McDonald 2005
#> 137  39   F      RR  5.0 McDonald 2005
#> 138  39   F      RR  5.0 McDonald 2005
#> 139  43   M      RR  0.0 McDonald 2005
#> 140  43   M      RR  0.0 McDonald 2005
#> 141  43   M      RR  0.0 McDonald 2005
#> 142  43   M      RR  0.0 McDonald 2005
#> 143  43   M      RR  0.0 McDonald 2005
#> 144  43   M      RR  0.0 McDonald 2005
#> 145  35   F      RR  3.5 McDonald 2005
#> 146  35   F      RR  3.5 McDonald 2005
#> 147  35   F      RR  3.5 McDonald 2005
#> 148  35   F      RR  3.5 McDonald 2005
#> 149  35   F      RR  3.5 McDonald 2005
#> 150  35   F      RR  3.5 McDonald 2005
#> 151  40   F      RR  2.0 McDonald 2005
#> 152  40   F      RR  2.0 McDonald 2005
#> 153  40   F      RR  2.0 McDonald 2005
#> 154  40   F      RR  2.0 McDonald 2005
#> 155  40   F      RR  2.0 McDonald 2005
#> 156  40   F      RR  2.0 McDonald 2005
#> 157  39   F      RR  2.5 McDonald 2005
#> 158  39   F      RR  2.5 McDonald 2005
#> 159  39   F      RR  2.5 McDonald 2005
#> 160  39   F      RR  2.5 McDonald 2005
#> 161  39   F      RR  2.5 McDonald 2005
#> 162  39   F      RR  2.5 McDonald 2005
#> 163  39   F      RR  0.0 McDonald 2005
#> 164  39   F      RR  0.0 McDonald 2005
#> 165  39   F      RR  0.0 McDonald 2005
#> 166  39   F      RR  0.0 McDonald 2005
#> 167  39   F      RR  0.0 McDonald 2005
#> 168  39   F      RR  0.0 McDonald 2005
#> 169  26   F     CIS  3.0 McDonald 2010
#> 170  26   F     CIS  3.0 McDonald 2010
#> 171  26   F     CIS  3.0 McDonald 2010
#> 172  26   F     CIS  3.0 McDonald 2010
#> 173  26   F     CIS  3.0 McDonald 2010
#> 174  26   F     CIS  3.0 McDonald 2010
#> 175  54   F      RR  1.5 McDonald 2005
#> 176  54   F      RR  1.5 McDonald 2005
#> 177  54   F      RR  1.5 McDonald 2005
#> 178  54   F      RR  1.5 McDonald 2005
#> 179  54   F      RR  1.5 McDonald 2005
#> 180  54   F      RR  1.5 McDonald 2005
df = ms_data(cohort = "longitudinal", data = "coregistered")