Run ITK-SNAP — itksnap • itksnapr

Executes ITK-SNAP

itksnap(grayscale, overlay = NULL, segmentation = NULL, labels = NULL,
  zoom = NULL, verbose = TRUE, ...)

Arguments

grayscale	filenames or nifti objects to be displayed.
overlay	filenames or nifti objects to be set as overlays
segmentation	segmentation image using `-s` option
labels	label descriptions using `-s` option
zoom	initial zoom in screen pixels/mm
verbose	Print out the command executed
...	arguments to pass to `itksnap_cmd`

Return of system command

dims = rep(10, 3)
arr = array(rnorm(prod(dims)), dim = dims)
nim = oro.nifti::nifti(arr)
if (FALSE) {
itksnap(nim)
}