FSL Orient

Source: R/fslhd.R

This function calls fslorient

fslorient(
  file,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

file

(character) image to be manipulated
retimg

(logical) return image of class nifti
reorient

(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern

(logical) to be passed to system
opts

(character) operations to be passed to fslorient
verbose

(logical) print out command before running
...

additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.