FSL Copy Geometry — fslcpgeom • fslr

This function calls fslcpgeom

fslcpgeom(
  file,
  file_with_header,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

file	(character) image to be manipulated
file_with_header	image with header to be copied over
retimg	(logical) return image of class nifti
reorient	(logical) If retimg, should file be reoriented when read in? Passed to `readnii`.
intern	(logical) to be passed to `system`
opts	(character) operations to be passed to `fslmaths`
verbose	(logical) print out command before running
...	additional arguments passed to `readnii`.

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.