FSL Change file type

Source: R/fslchfiletype.R

This function calls fslchfiletype

fslchfiletype(
  file,
  filetype = "NIFTI_GZ",
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  verbose = TRUE,
  ...
)

Arguments

file

(character) image to be manipulated
filetype

filetype to change image to
outfile

Output filename. If NULL, will overwrite input file
retimg

(logical) return image of class nifti
reorient

(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern

(logical) to be passed to system
verbose

(logical) print out command before running
...

additional arguments passed to readnii.

Value

If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE.