Apply Warp from FNIRT

Source: R/applywarp.R

This function applies a coefficient map from fnirt to other images

fsl_applywarp(
  infile,
  reffile,
  warpfile,
  outfile = NULL,
  retimg = TRUE,
  reorient = FALSE,
  intern = FALSE,
  opts = "",
  verbose = TRUE,
  ...
)

Arguments

infile

(character) input filename
reffile

(character) reference image to be registered to
warpfile

(character) reference image to be registered to
outfile

(character) output filename
retimg

(logical) return image of class nifti
reorient

(logical) If retimg, should file be reoriented when read in? Passed to readnii.
intern

(logical) pass to system
opts

(character) additional options to FLIRT
verbose

(logical) print out command before running
...

additional arguments passed to readnii.

Value

character or logical depending on intern