Reconstruction Helper for recon from Freesurfer

Source: R/reconner.R

Wrapper for the recon-all function in Freesurfer

reconner(
  infile = NULL,
  outdir = NULL,
  subjid = NULL,
  verbose = TRUE,
  opts = "-all",
  force = FALSE
)

Arguments

infile

Input filename (dcm or nii)
outdir

Output directory
subjid

subject id
verbose

print diagnostic messages
opts

Additional options
force

Force running of the reconstruction

Value

Result of system

Note

If you set infile = NULL, then you can omit the -i flag in recon-all