Use Freesurfers MRI Segmentation Algorithm

Source: R/mri_segment.R

This function calls mri_segment to segment tissues from an image

mri_segment(file, outfile = NULL, retimg = TRUE, opts = "", ...)

Arguments

file

(character) input filename
outfile

(character) output filename
retimg

(logical) return image of class nifti
opts

(character) additional options to mri_segment
...

additional arguments passed to fs_cmd.

Value

Character or nifti depending on retimg

Note

NOT COMPLETE

Examples

if (FALSE) {
if (have_fs()){
    mri_segment("/path/to/T1.nii.gz")
} 
}