Create Z-score-to-Template Image

Source: R/zscore_template.R

Registers an image to a template, subtracts a mean and sd image, and will return the image either in template space or native.

zscore_template(
  img,
  template.file,
  mean.img,
  sd.img,
  outfile = NULL,
  typeofTransform = "SyN",
  interpolator = "Linear",
  robust = TRUE,
  probs = c(0, 0.999),
  native = TRUE,
  verbose = TRUE,
  ...
)

Arguments

img

Image to be z-scored
template.file

Template file to be registered to. An affine registration will be done usually, so if the image is skull-stripped, use a skull-stripped template and vice versa
mean.img

Mean image to be subtracted
sd.img

SD image to be divded
outfile

Output filename. Will use writenii to write
typeofTransform

Transform for registration. See antsRegistration
interpolator

Interpolator to use, See antsRegistration
robust

Should See robust_window be used on the image
probs

quantiles to constrain the image these define the window sent to robust_window
native

Should a native-space image (default) or template-space image be returned
verbose

Print diagnostic output
...

Options passed to ants_regwrite.

Value

Object of class nifti