Run Atropos for nifti objects — otropos • extrantsr

Runs Atropos (a finite mixture model) but with more robust inputs

otropos(
  a,
  x,
  m = "[0.2,1x1x1]",
  verbose = TRUE,
  ...,
  make_mask = TRUE,
  reset_origin = TRUE
)

Arguments

a	Images to segment. Can be a `nifti` object, `antsImage` object, `character` vector, or list of these
x	Mask image. If none is supplied and `make_mask = TRUE`, then mask is created by first
m	mrf parameters as a string, usually "`[smoothingFactor,radius]`". Reset for 3D images, compared to 2D default atropos has.
verbose	print diagnostic messages
...	Additional arguments to be passed to `atropos`
make_mask	Logical indicating if mask should be created if `x` is missing. Mask is made using `getMask` with first image of `a`.
reset_origin	Should `antsCopyOrigin` be done on the mask?

Result of atropos, but with nifti objects.