Apply MALF Registrations

Takes in an input file, set of registrations, and a set of template structures and applies the registrations, with a different interpolator if necessary

apply_malf_regs(
  infile,
  regs,
  template.structs,
  keep_images = TRUE,
  outfiles = NULL,
  inverted = FALSE,
  interpolator = NULL,
  verbose = TRUE,
  ...
)

Arguments

infile	Input Image file
regs	List of registrations from malf or malf_registration, each element must have fwdtransforms and interpolator. Same length as template.structs
template.structs	Template gold standards to apply registration into infile space
keep_images	Keep the template.structs in infile space
outfiles	Output filenames for template.structs in infile space
inverted	Should the MALF be inverted (inverse transforms are used instead of forward)
interpolator	interpolation done for antsApplyTransforms, can be different than original MALF
verbose	Print diagnostic output
...	Arguments to be passed to ants_apply_transforms

Value

The output filename or the nifti image or list of registrations and output file