alvin Package:

The goal of alvin is to provide automatic lateral ventricle delineation (’ALVIN’) atlas. Provides the atlas and MATLAB m file.

Installation

You can install alvin from GitHub with:

# install.packages("remotes")
remotes::install_github("muschellij2/alvin")

library(MNITemplate)
library(neurobase)
#> Loading required package: oro.nifti
#> oro.nifti 0.10.1
#> Registered S3 method overwritten by 'R.oo':
#>   method        from       
#>   throw.default R.methodsS3
brain = MNITemplate::getMNIPath(what = "Brain", res = "2mm")
brain = neurobase::readnii(brain)
alvin = alvin::alvin_image(mm = 2) > 0
ortho2(brain, alvin)