Intersection of a list of brain masks

Source: R/utils.R

Intersection of a list of brain masks.

maskIntersect(list, output.file = NULL, prob = 1, reorient = FALSE,
  returnObject = TRUE, writeToDisk = TRUE, verbose = TRUE)

Arguments

list

List of the mask input files (nifti files) or mask nifti objects.
output.file

Optional filename for the output image.
prob

Probability of intersection. Ex: 0.9 will return a mask for voxels that intersect 90% of the time.
reorient

Should the input images be reoriented? FALSE by default.
returnObject

Should a nifti object be returned?
writeToDisk

Should the intersection mask be saved to the disk?
verbose

Should messages be printed?

Value

If returnObject is TRUE, a nifti object is returned, and if writeToDisk is TRUE, the intersection mask is saved to disk as a NIfTI file.

Author

Jean-Philippe Fortin

Examples


if (require(EveTemplate)){
  path1 <- path2 <- getEvePath()
  inter <- maskIntersect(list(path1,path2), writeToDisk=FALSE)
}
#> Loading required package: EveTemplate
#> Loading required package: oro.nifti
#> oro.nifti 0.10.3