MNITemplate
The goal of MNITemplate is to provide the MNI Template of T1-weighted MRI imaging from http://www.bic.mni.mcgill.ca/ServicesAtlases/ICBM152NLin2009. In addition to the standard template, the image has been segmented into gray matter, white matter, and cerebrospinal fluid (’CSF’) using the ‘FAST’ algorithm from ‘FSL’ https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST..
Creator: Jean-Philippe Fortin, jeanphi@mail.med.upenn.edu
Authors: Jean-Philippe Fortin, John Muschelli, Russell T. Shinohara
Software status
| Resource: | Travis CI |
|---|---|
| Platform: | Linux |
| R CMD check |  |
Table of content
1. Introduction
The MNI152 template that is included with FSL: https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/Atlases
2. Reading the data into R
library(MNITemplate)
readMNI("T1")3. Files
| File | Description | Reader |
|---|---|---|
| MNI152_TI_1mm.nii.gz | T1-w MNI Template, 1mm | readMNI("T1") |
| MNI152_TI_1mm_Brain.nii.gz | T1-w MNI Template, 1mm, skull stripped | readMNI("Brain") |
| MNI152_TI_1mm_Brain_Mask.nii.gz | T1-w MNI Template, 1mm, brain mask | readMNI("Brain_Mask") |
| MNI152_TI_2mm.nii.gz | T1-w MNI Template, 2mm | readMNI("T1", res="2mm") |
| MNI152_TI_2mm_Brain.nii.gz | T1-w MNI Template, 2mm, skull stripped | readMNI("Brain", res="2mm") |
| MNI152_TI_2mm_Brain_Mask.nii.gz | T1-w MNI Template, 2mm, brain mask | readMNI("Brain_Mask", res="2mm") |
| Tissue Segmentation: | ||
| MNI152_TI_1mm_Brain_FAST_seg.nii.gz | FSL FAST tissue classes (1=CSF, 2=GM, 3=WM) for 1mm res | readMNISeg() |
| MNI152_TI_2mm_Brain_FAST_seg.nii.gz | FSL FAST tissue classes (1=CSF, 2=GM, 3=WM) for 2mm res | readMNISeg(res="2mm") |