This will give a unique ID to each connected component 1 through N of size > minClusterSize

labelClusters(imagein, minClusterSize = 50, minThresh = 1e-06,
  maxThresh = 1, fullyConnected = FALSE)

Arguments

imagein

input antsImage e.g. a statistical map

minClusterSize

throw away clusters smaller than this value

minThresh

threshold to a statistical map

maxThresh

threshold to a statistical map

fullyConnected

boolean sets neighborhood connectivity pattern

Value

labeled cluster image is output

Examples

img<-antsImageRead( getANTsRData("r16") ) timgFully = labelClusters( img, 10, 128, 150, TRUE ) timgFace = labelClusters( img, 10, 128, 150, FALSE )
# NOT RUN { plot(img, timgFace ) plot(img, timgFully ) # }